******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/worm/fasta/RankLinear2.0_40/rpc-1.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrIII:7770719-7770799 1.0000 80 chrI:3366965-3367045 1.0000 80 chrX:1982818-1982898 1.0000 80 chrX:14951951-14952031 1.0000 80 chrX:15080190-15080270 1.0000 80 chrX:8312509-8312589 1.0000 80 chrX:14486234-14486314 1.0000 80 chrIV:4866780-4866860 1.0000 80 chrI:9563900-9563980 1.0000 80 chrX:16209277-16209357 1.0000 80 chrX:12220815-12220895 1.0000 80 chrX:12013762-12013842 1.0000 80 chrII:1120436-1120516 1.0000 80 chrX:15303631-15303711 1.0000 80 chrIV:13443722-13443802 1.0000 80 chrX:16350182-16350262 1.0000 80 chrX:603445-603525 1.0000 80 chrX:15733694-15733774 1.0000 80 chrX:13990687-13990767 1.0000 80 chrV:19355366-19355446 1.0000 80 chrI:196857-196937 1.0000 80 chrX:10840262-10840342 1.0000 80 chrX:12967206-12967286 1.0000 80 chrX:15709257-15709337 1.0000 80 chrX:15697018-15697098 1.0000 80 chrII:6797934-6798014 1.0000 80 chrX:16274557-16274637 1.0000 80 chrI:197112-197192 1.0000 80 chrX:12944243-12944323 1.0000 80 chrV:16902387-16902467 1.0000 80 chrII:2274178-2274258 1.0000 80 chrI:11249367-11249447 1.0000 80 chrV:18259205-18259285 1.0000 80 chrX:15205279-15205359 1.0000 80 chrI:9562384-9562464 1.0000 80 chrII:1560321-1560401 1.0000 80 chrV:19693559-19693639 1.0000 80 chrIV:9240292-9240372 1.0000 80 chrX:1713739-1713819 1.0000 80 chrX:9663428-9663508 1.0000 80 chrX:15588419-15588499 1.0000 80 chrIV:4107599-4107679 1.0000 80 chrI:14322719-14322799 1.0000 80 chrV:20024119-20024199 1.0000 80 chrX:14761458-14761538 1.0000 80 chrI:13063119-13063199 1.0000 80 chrX:1107040-1107120 1.0000 80 chrIV:10323728-10323808 1.0000 80 chrV:428226-428306 1.0000 80 chrX:15124297-15124377 1.0000 80 chrV:17786023-17786103 1.0000 80 chrV:15522385-15522465 1.0000 80 chrIII:2460603-2460683 1.0000 80 chrII:1086962-1087042 1.0000 80 chrX:16213485-16213565 1.0000 80 chrV:1632476-1632556 1.0000 80 chrX:16371094-16371174 1.0000 80 chrX:16212516-16212596 1.0000 80 chrX:868475-868555 1.0000 80 chrV:18612212-18612292 1.0000 80 chrIII:680709-680789 1.0000 80 chrIV:16670545-16670625 1.0000 80 chrX:15587530-15587610 1.0000 80 chrX:1589691-1589771 1.0000 80 chrIII:13728247-13728327 1.0000 80 chrI:8781186-8781266 1.0000 80 chrIII:11472181-11472261 1.0000 80 chrV:19693158-19693238 1.0000 80 chrV:20031117-20031197 1.0000 80 chrIV:13439137-13439217 1.0000 80 chrIII:10976659-10976739 1.0000 80 chrIV:482228-482308 1.0000 80 chrV:19653346-19653426 1.0000 80 chrV:17716260-17716340 1.0000 80 chrV:18367373-18367453 1.0000 80 chrX:15332979-15333059 1.0000 80 chrIV:5350370-5350450 1.0000 80 chrI:9558765-9558845 1.0000 80 chrV:18307376-18307456 1.0000 80 chrIII:2290400-2290480 1.0000 80 chrV:17824504-17824584 1.0000 80 chrX:9647061-9647141 1.0000 80 chrV:19477724-19477804 1.0000 80 chrIV:1481222-1481302 1.0000 80 chrX:5338931-5339011 1.0000 80 chrIII:12192913-12192993 1.0000 80 chrI:12420217-12420297 1.0000 80 chrII:1473163-1473243 1.0000 80 chrX:1089423-1089503 1.0000 80 chrX:1831691-1831771 1.0000 80 chrII:1522117-1522197 1.0000 80 chrX:14621426-14621506 1.0000 80 chrV:19091084-19091164 1.0000 80 chrIV:1372073-1372153 1.0000 80 chrX:1620259-1620339 1.0000 80 chrV:506606-506686 1.0000 80 chrX:2416022-2416102 1.0000 80 chrV:19618486-19618566 1.0000 80 chrI:12283968-12284048 1.0000 80 chrV:14237840-14237920 1.0000 80 chrII:982670-982750 1.0000 80 chrX:15022679-15022759 1.0000 80 chrV:1425015-1425095 1.0000 80 chrV:17947416-17947496 1.0000 80 chrI:1808736-1808816 1.0000 80 chrV:20222660-20222740 1.0000 80 chrX:2980259-2980339 1.0000 80 chrV:20119924-20120004 1.0000 80 chrX:14328951-14329031 1.0000 80 chrX:1506361-1506441 1.0000 80 chrV:19061188-19061268 1.0000 80 chrII:12728760-12728840 1.0000 80 chrV:19059213-19059293 1.0000 80 chrV:1797995-1798075 1.0000 80 chrV:19557641-19557721 1.0000 80 chrX:17077833-17077913 1.0000 80 chrV:20277082-20277162 1.0000 80 chrV:19057482-19057562 1.0000 80 chrX:15805065-15805145 1.0000 80 chrIV:1148547-1148627 1.0000 80 chrIV:14515375-14515455 1.0000 80 chrIII:13481185-13481265 1.0000 80 chrX:15353061-15353141 1.0000 80 chrI:14678342-14678422 1.0000 80 chrI:9384989-9385069 1.0000 80 chrII:4495185-4495265 1.0000 80 chrX:14517265-14517345 1.0000 80 chrX:15755657-15755737 1.0000 80 chrX:13346035-13346115 1.0000 80 chrX:15615283-15615363 1.0000 80 chrX:3621454-3621534 1.0000 80 chrV:19393966-19394046 1.0000 80 chrX:13935885-13935965 1.0000 80 chrV:2262362-2262442 1.0000 80 chrI:11509365-11509445 1.0000 80 chrX:15426630-15426710 1.0000 80 chrIV:2800068-2800148 1.0000 80 chrX:13346251-13346331 1.0000 80 chrIII:7821699-7821779 1.0000 80 chrI:12609967-12610047 1.0000 80 chrIV:1490523-1490603 1.0000 80 chrII:2648350-2648430 1.0000 80 chrX:15865113-15865193 1.0000 80 chrV:20223888-20223968 1.0000 80 chrII:1362580-1362660 1.0000 80 chrX:11283278-11283358 1.0000 80 chrV:19656183-19656263 1.0000 80 chrIV:1637469-1637549 1.0000 80 chrX:15120476-15120556 1.0000 80 chrX:16308656-16308736 1.0000 80 chrI:13730025-13730105 1.0000 80 chrX:15334514-15334594 1.0000 80 chrI:803780-803860 1.0000 80 chrV:17694113-17694193 1.0000 80 chrX:15385361-15385441 1.0000 80 chrX:5836263-5836343 1.0000 80 chrX:17078033-17078113 1.0000 80 chrV:20219577-20219657 1.0000 80 chrII:1098943-1099023 1.0000 80 chrIV:108349-108429 1.0000 80 chrV:506869-506949 1.0000 80 chrII:755144-755224 1.0000 80 chrII:4495449-4495529 1.0000 80 chrV:15297667-15297747 1.0000 80 chrV:10772047-10772127 1.0000 80 chrX:15717086-15717166 1.0000 80 chrIII:1983011-1983091 1.0000 80 chrV:19560087-19560167 1.0000 80 chrX:16172229-16172309 1.0000 80 chrV:20279473-20279553 1.0000 80 chrX:15997233-15997313 1.0000 80 chrII:13849128-13849208 1.0000 80 chrV:17684636-17684716 1.0000 80 chrIV:3864585-3864665 1.0000 80 chrV:17691520-17691600 1.0000 80 chrX:15997485-15997565 1.0000 80 chrIII:6066398-6066478 1.0000 80 chrI:14243894-14243974 1.0000 80 chrII:1102109-1102189 1.0000 80 chrX:14700548-14700628 1.0000 80 chrV:4801522-4801602 1.0000 80 chrX:14957905-14957985 1.0000 80 chrI:11499204-11499284 1.0000 80 chrV:18370158-18370238 1.0000 80 chrII:749688-749768 1.0000 80 chrI:12610361-12610441 1.0000 80 chrX:15426894-15426974 1.0000 80 chrIII:12297521-12297601 1.0000 80 chrIV:1630441-1630521 1.0000 80 chrII:3262486-3262566 1.0000 80 chrV:19398558-19398638 1.0000 80 chrV:19623160-19623240 1.0000 80 chrIII:1662572-1662652 1.0000 80 chrX:16212781-16212861 1.0000 80 chrII:13849336-13849416 1.0000 80 chrV:19664213-19664293 1.0000 80 chrIV:17318987-17319067 1.0000 80 chrX:15385564-15385644 1.0000 80 chrV:19669663-19669743 1.0000 80 chrV:20023227-20023307 1.0000 80 chrV:17690447-17690527 1.0000 80 chrX:15964050-15964130 1.0000 80 chrV:19128709-19128789 1.0000 80 chrII:1101192-1101272 1.0000 80 chrII:11769199-11769279 1.0000 80 chrV:19579664-19579744 1.0000 80 chrX:10942603-10942683 1.0000 80 chrV:19062886-19062966 1.0000 80 chrIII:2652870-2652950 1.0000 80 chrX:15029864-15029944 1.0000 80 chrV:14766150-14766230 1.0000 80 chrV:17782841-17782921 1.0000 80 chrII:2822177-2822257 1.0000 80 chrIII:6066601-6066681 1.0000 80 chrII:1476165-1476245 1.0000 80 chrV:863086-863166 1.0000 80 chrI:2687275-2687355 1.0000 80 chrI:596697-596777 1.0000 80 chrII:1482593-1482673 1.0000 80 chrX:13697665-13697745 1.0000 80 chrIII:1046910-1046990 1.0000 80 chrI:997228-997308 1.0000 80 chrX:2652724-2652804 1.0000 80 chrIII:2137661-2137741 1.0000 80 chrIV:11838023-11838103 1.0000 80 chrV:17935733-17935813 1.0000 80 chrI:13693587-13693667 1.0000 80 chrIV:541486-541566 1.0000 80 chrX:12312951-12313031 1.0000 80 chrIV:541258-541338 1.0000 80 chrX:17233429-17233509 1.0000 80 chrI:10076203-10076283 1.0000 80 chrI:13895225-13895305 1.0000 80 chrI:12486581-12486661 1.0000 80 chrV:19619825-19619905 1.0000 80 chrIII:2130493-2130573 1.0000 80 chrII:1091435-1091515 1.0000 80 chrX:2416227-2416307 1.0000 80 chrV:16712968-16713048 1.0000 80 chrX:11486508-11486588 1.0000 80 chrV:20449215-20449295 1.0000 80 chrII:1474973-1475053 1.0000 80 chrIII:3198712-3198792 1.0000 80 chrX:1994277-1994357 1.0000 80 chrX:11936197-11936277 1.0000 80 chrX:15335927-15336007 1.0000 80 chrI:11133822-11133902 1.0000 80 chrV:20280513-20280593 1.0000 80 chrV:19706461-19706541 1.0000 80 chrX:14972324-14972404 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/worm/inference_raw/MEME/RankLinear2.0_40_rpc-1/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/worm/fasta/RankLinear2.0_40/rpc-1.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.28 C 0.225 G 0.222 T 0.273 Background letter frequencies (from file dataset with add-one prior applied): A 0.28 C 0.225 G 0.222 T 0.273 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF CTGAGCYA MEME-1 width = 8 sites = 84 llr = 769 E-value = 2.1e-091 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTGAGCYA MEME-1 Description -------------------------------------------------------------------------------- Simplified A :::9:::a pos.-specific C 8::1:a5: probability G ::a:a::: matrix T 2a::::5: bits 2.2 * 2.0 * ** 1.7 ** ** 1.5 ***** * Relative 1.3 ****** * Entropy 1.1 ****** * (13.2 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CTGAGCCA consensus T T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGAGCYA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrV:19706461-19706541 41 1.20e-05 CTCTACCCGA CTGAGCCA CTCTCCCACT chrV:20280513-20280593 45 1.20e-05 CTCTTCCCGC CTGAGCCA CTGCGACCCA chrI:10076203-10076283 33 1.20e-05 GTCTTACCTG CTGAGCCA TGATGGTCGC chrI:13693587-13693667 65 1.20e-05 gaaaatccca ctgagcca ttcggcca chrII:1476165-1476245 53 1.20e-05 ATCTTACCGA CTGAGCCA AAAACTCAAA chrV:20023227-20023307 52 1.20e-05 CCGTTACCGC CTGAGCCA CTTTTTCCCA chrV:19669663-19669743 50 1.20e-05 CTCTACCCGA CTGAGCCA CCATGACAAT chrIV:1630441-1630521 29 1.20e-05 aaaaatcaca ctgagcca ttcggactaa chrI:11499204-11499284 48 1.20e-05 CTGTTACCTA CTGAGCCA ACGCGATCCC chrI:14243894-14243974 33 1.20e-05 caaaatccca ctgagcca ttcggacaTT chrV:20219577-20219657 47 1.20e-05 CTCTGCCCAC CTGAGCCA CTGCGACCCA chrV:17694113-17694193 39 1.20e-05 CTCTACCCGA CTGAGCCA CAGGTCAAAA chrV:20223888-20223968 43 1.20e-05 CTCTACCCAC CTGAGCCA CTTGAGCATT chrV:19557641-19557721 56 1.20e-05 CTCTACCCAA CTGAGCCA CTGCGTCGCA chrV:20119924-20120004 41 1.20e-05 CTCTTACCGA CTGAGCCA CCGCGGCACT chrV:20222660-20222740 43 1.20e-05 CTCTACCCAT CTGAGCCA CTGACGCCCA chrV:17947416-17947496 40 1.20e-05 CGCTAACCGA CTGAGCCA CTTGCTCCCC chrV:15522385-15522465 18 1.20e-05 CATACATCCA CTGAGCCA GACCGTatgg chrX:14972324-14972404 56 2.66e-05 ccactaccga ctgagcta tcCCGTACTA chrX:11936197-11936277 39 2.66e-05 ccactaccga ctgagcta tccgcccccA chrIV:541486-541566 40 2.66e-05 ccactaccga ctgagcta tctgccccTA chrV:19128709-19128789 42 2.66e-05 GTGTACCCAC CTGAGCTA AAAACTCCAT chrIII:12297521-12297601 7 2.66e-05 taccga ctgagcta tctgcccccC chrX:14700548-14700628 57 2.66e-05 ccactgccga ctgagcta ATATCTCCCA chrV:15297667-15297747 50 2.66e-05 ccactaccga ctgagcta tctgcccccG chrV:506869-506949 37 2.66e-05 ccactaccga ctgagcta tctgccctcT chrX:15334514-15334594 46 2.66e-05 ccactaccga ctgagcta ttctgcccTT chrX:15120476-15120556 55 2.66e-05 ccactaccga ctgagcta cccgccccGT chrX:11283278-11283358 14 2.66e-05 ccactaccga ctgagcta tccacccccT chrII:2648350-2648430 67 2.66e-05 ccactatcga ctgagcta tctgcc chrV:2262362-2262442 45 2.66e-05 ccactaccga ctgagcta tcctgtccAC chrX:3621454-3621534 11 2.66e-05 ccactaccga ctgagcta tctgcccccG chrX:15615283-15615363 42 2.66e-05 ccactaccga ctgagcta tcccgctccT chrX:15755657-15755737 52 2.66e-05 ccactaccga ctgagcta tctgcccAAt chrV:1797995-1798075 4 2.66e-05 cga ctgagcta tctgcccccT chrX:14328951-14329031 50 2.66e-05 ccactaccca ctgagcta tctgccGATT chrX:2980259-2980339 6 2.66e-05 accga ctgagcta tctgcccccT chrV:19618486-19618566 45 2.66e-05 ATGTTAGCCA CTGAGCTA CTTGGTTTTT chrIV:1372073-1372153 33 2.66e-05 ccactaccga ctgagcta tctgcccACC chrV:17824504-17824584 59 2.66e-05 ccaccaccga ctgagcta tcgtgtctcc chrX:1589691-1589771 35 2.66e-05 CTCTAACCGA CTGAGCTA TGGCGGCTGG chrX:868475-868555 50 2.66e-05 ccactaccga ctgagcta tctgcccTAC chrX:9663428-9663508 27 2.66e-05 tcactaccga ctgagcta tctgtccccA chrII:1560321-1560401 4 2.66e-05 cga ctgagcta tctgcccccA chrX:15205279-15205359 42 2.66e-05 ccactaccga ctgagcta tcctgccccT chrV:18259205-18259285 17 2.66e-05 ccactaccga ctgagcta tctgcccccT chrI:11249367-11249447 13 2.66e-05 ccactaccga ctgagcta tctgcccccA chrV:16902387-16902467 44 2.66e-05 ccactaccga ctgagcta tccccccGAT chrX:12944243-12944323 43 2.66e-05 ccactaccga ctgagcta tccgcccccC chrX:15733694-15733774 43 2.66e-05 ccactaccga ctgagcta tcctgccccc chrX:603445-603525 38 2.66e-05 ccactaccga ctgagcta tctgcccccA chrX:15303631-15303711 39 2.66e-05 gcgctaccgg ctgagcta tctgccccTG chrX:16209277-16209357 20 2.66e-05 GCTCTACCAA CTGAGCTA TCGACGGCAC chrX:14486234-14486314 35 2.66e-05 GCTCTACCGA CTGAGCTA TTTTTACTTT chrII:1482593-1482673 5 4.12e-05 CCAG TTGAGCCA TAAAGACAAA chrII:1101192-1101272 15 4.12e-05 CTCCTACCAG TTGAGCCA AAAATTCAAT chrII:749688-749768 50 4.12e-05 CTCTACCCAG TTGAGCCA AAACTACACG chrII:1102109-1102189 2 4.12e-05 G TTGAGCCA AAACTCCAGT chrII:1098943-1099023 5 4.12e-05 CCAG TTGAGCCA AAAGCCTAAT chrV:19061188-19061268 7 4.12e-05 ACCCAG TTGAGCCA AAAAGGAAAT chrII:1522117-1522197 29 4.12e-05 CTCTTACCAG TTGAGCCA TCGGCACCAA chrIV:1481222-1481302 34 4.12e-05 CTCTTACCCA TTGAGCCA TCACTACCAA chrIV:482228-482308 33 4.12e-05 CTCTTACCTG TTGAGCCA TGATGGTCGC chrV:19693158-19693238 6 4.12e-05 CCCAG TTGAGCCA CTTCCATCCT chrV:19693559-19693639 48 4.12e-05 ATCTACCCAG TTGAGCCA CTTTCACCAT chrX:15709257-15709337 25 5.89e-05 ccactaccga ttgagcta tcctgccccc chrI:12486581-12486661 43 6.85e-05 gagaatctca ctgcgcca atcggacaca chrI:13895225-13895305 58 6.85e-05 CTCTTACTCA CTGCGCCA TGCGTGCGCC chrII:1362580-1362660 31 6.85e-05 CTCTTACCGA CTGCGCCA AAAATTCAAT chrV:17786023-17786103 44 6.85e-05 TCACTAGCCA CTGCGCCA AAAGTGAATT chrIV:1490523-1490603 69 8.02e-05 CCGTAACCGA CTGCGCTA CTGC chrX:15124297-15124377 46 1.01e-04 ccactaccga ctgagctg ttctgccACT chrV:863086-863166 3 1.13e-04 CG TTGCGCCA AATCTGCCTC chrV:17716260-17716340 28 1.13e-04 ATGTTGCCGA TTGCGCCA TGCGCGGACC chrII:1086962-1087042 32 1.13e-04 CTCTTACCAG TTGCGCCA AAACTACACT chrX:15080190-15080270 35 1.25e-04 tccgagccgg ctgagcga gtctttgaag chrV:19653346-19653426 6 1.54e-04 CGACT CTTAGCCA GCAATTTTGA chrV:20449215-20449295 41 1.69e-04 gaaaatccta ctgagaca tttgggcgaa chrIV:11838023-11838103 33 1.69e-04 TCAACTCCGG CTGAGACA GATAGATTTG chrX:15332979-15333059 43 1.87e-04 ccactaccga cttagcta tctgccctcT chrV:14237840-14237920 36 2.26e-04 GTTCTTAAAT TTGAGCCG TTCCCGGTCC chrIV:10323728-10323808 5 2.26e-04 AAAT TTGAGCCG TTCCCGGTCC chrX:15697018-15697098 3 2.26e-04 tt ttgagccg gatgggtgag chrI:1808736-1808816 48 2.38e-04 ccactaccga ccgagcta tcccggcccc -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGAGCYA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:19706461-19706541 1.2e-05 40_[+1]_32 chrV:20280513-20280593 1.2e-05 44_[+1]_28 chrI:10076203-10076283 1.2e-05 32_[+1]_40 chrI:13693587-13693667 1.2e-05 64_[+1]_8 chrII:1476165-1476245 1.2e-05 52_[+1]_20 chrV:20023227-20023307 1.2e-05 51_[+1]_21 chrV:19669663-19669743 1.2e-05 49_[+1]_23 chrIV:1630441-1630521 1.2e-05 28_[+1]_44 chrI:11499204-11499284 1.2e-05 47_[+1]_25 chrI:14243894-14243974 1.2e-05 32_[+1]_40 chrV:20219577-20219657 1.2e-05 46_[+1]_26 chrV:17694113-17694193 1.2e-05 38_[+1]_34 chrV:20223888-20223968 1.2e-05 42_[+1]_30 chrV:19557641-19557721 1.2e-05 55_[+1]_17 chrV:20119924-20120004 1.2e-05 40_[+1]_32 chrV:20222660-20222740 1.2e-05 42_[+1]_30 chrV:17947416-17947496 1.2e-05 39_[+1]_33 chrV:15522385-15522465 1.2e-05 17_[+1]_55 chrX:14972324-14972404 2.7e-05 55_[+1]_17 chrX:11936197-11936277 2.7e-05 38_[+1]_34 chrIV:541486-541566 2.7e-05 39_[+1]_33 chrV:19128709-19128789 2.7e-05 41_[+1]_31 chrIII:12297521-12297601 2.7e-05 6_[+1]_66 chrX:14700548-14700628 2.7e-05 56_[+1]_16 chrV:15297667-15297747 2.7e-05 49_[+1]_23 chrV:506869-506949 2.7e-05 36_[+1]_36 chrX:15334514-15334594 2.7e-05 45_[+1]_27 chrX:15120476-15120556 2.7e-05 54_[+1]_18 chrX:11283278-11283358 2.7e-05 13_[+1]_59 chrII:2648350-2648430 2.7e-05 66_[+1]_6 chrV:2262362-2262442 2.7e-05 44_[+1]_28 chrX:3621454-3621534 2.7e-05 10_[+1]_62 chrX:15615283-15615363 2.7e-05 41_[+1]_31 chrX:15755657-15755737 2.7e-05 51_[+1]_21 chrV:1797995-1798075 2.7e-05 3_[+1]_69 chrX:14328951-14329031 2.7e-05 49_[+1]_23 chrX:2980259-2980339 2.7e-05 5_[+1]_67 chrV:19618486-19618566 2.7e-05 44_[+1]_28 chrIV:1372073-1372153 2.7e-05 32_[+1]_40 chrV:17824504-17824584 2.7e-05 58_[+1]_14 chrX:1589691-1589771 2.7e-05 34_[+1]_38 chrX:868475-868555 2.7e-05 49_[+1]_23 chrX:9663428-9663508 2.7e-05 26_[+1]_46 chrII:1560321-1560401 2.7e-05 3_[+1]_69 chrX:15205279-15205359 2.7e-05 41_[+1]_31 chrV:18259205-18259285 2.7e-05 16_[+1]_56 chrI:11249367-11249447 2.7e-05 12_[+1]_60 chrV:16902387-16902467 2.7e-05 43_[+1]_29 chrX:12944243-12944323 2.7e-05 42_[+1]_30 chrX:15733694-15733774 2.7e-05 42_[+1]_30 chrX:603445-603525 2.7e-05 37_[+1]_35 chrX:15303631-15303711 2.7e-05 38_[+1]_34 chrX:16209277-16209357 2.7e-05 19_[+1]_53 chrX:14486234-14486314 2.7e-05 34_[+1]_38 chrII:1482593-1482673 4.1e-05 4_[+1]_68 chrII:1101192-1101272 4.1e-05 14_[+1]_58 chrII:749688-749768 4.1e-05 49_[+1]_23 chrII:1102109-1102189 4.1e-05 1_[+1]_71 chrII:1098943-1099023 4.1e-05 4_[+1]_68 chrV:19061188-19061268 4.1e-05 6_[+1]_66 chrII:1522117-1522197 4.1e-05 28_[+1]_44 chrIV:1481222-1481302 4.1e-05 33_[+1]_39 chrIV:482228-482308 4.1e-05 32_[+1]_40 chrV:19693158-19693238 4.1e-05 5_[+1]_67 chrV:19693559-19693639 4.1e-05 47_[+1]_25 chrX:15709257-15709337 5.9e-05 24_[+1]_48 chrI:12486581-12486661 6.9e-05 42_[+1]_30 chrI:13895225-13895305 6.9e-05 57_[+1]_15 chrII:1362580-1362660 6.9e-05 30_[+1]_42 chrV:17786023-17786103 6.9e-05 43_[+1]_29 chrIV:1490523-1490603 8e-05 68_[+1]_4 chrX:15124297-15124377 0.0001 45_[+1]_27 chrV:863086-863166 0.00011 2_[+1]_70 chrV:17716260-17716340 0.00011 27_[+1]_45 chrII:1086962-1087042 0.00011 31_[+1]_41 chrX:15080190-15080270 0.00012 34_[+1]_38 chrV:19653346-19653426 0.00015 5_[+1]_67 chrV:20449215-20449295 0.00017 40_[+1]_32 chrIV:11838023-11838103 0.00017 32_[+1]_40 chrX:15332979-15333059 0.00019 42_[+1]_30 chrV:14237840-14237920 0.00023 35_[+1]_37 chrIV:10323728-10323808 0.00023 4_[+1]_68 chrX:15697018-15697098 0.00023 2_[+1]_70 chrI:1808736-1808816 0.00024 47_[+1]_25 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGAGCYA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTGAGCYA width=8 seqs=84 chrV:19706461-19706541 ( 41) CTGAGCCA 1 chrV:20280513-20280593 ( 45) CTGAGCCA 1 chrI:10076203-10076283 ( 33) CTGAGCCA 1 chrI:13693587-13693667 ( 65) CTGAGCCA 1 chrII:1476165-1476245 ( 53) CTGAGCCA 1 chrV:20023227-20023307 ( 52) CTGAGCCA 1 chrV:19669663-19669743 ( 50) CTGAGCCA 1 chrIV:1630441-1630521 ( 29) CTGAGCCA 1 chrI:11499204-11499284 ( 48) CTGAGCCA 1 chrI:14243894-14243974 ( 33) CTGAGCCA 1 chrV:20219577-20219657 ( 47) CTGAGCCA 1 chrV:17694113-17694193 ( 39) CTGAGCCA 1 chrV:20223888-20223968 ( 43) CTGAGCCA 1 chrV:19557641-19557721 ( 56) CTGAGCCA 1 chrV:20119924-20120004 ( 41) CTGAGCCA 1 chrV:20222660-20222740 ( 43) CTGAGCCA 1 chrV:17947416-17947496 ( 40) CTGAGCCA 1 chrV:15522385-15522465 ( 18) CTGAGCCA 1 chrX:14972324-14972404 ( 56) CTGAGCTA 1 chrX:11936197-11936277 ( 39) CTGAGCTA 1 chrIV:541486-541566 ( 40) CTGAGCTA 1 chrV:19128709-19128789 ( 42) CTGAGCTA 1 chrIII:12297521-12297601 ( 7) CTGAGCTA 1 chrX:14700548-14700628 ( 57) CTGAGCTA 1 chrV:15297667-15297747 ( 50) CTGAGCTA 1 chrV:506869-506949 ( 37) CTGAGCTA 1 chrX:15334514-15334594 ( 46) CTGAGCTA 1 chrX:15120476-15120556 ( 55) CTGAGCTA 1 chrX:11283278-11283358 ( 14) CTGAGCTA 1 chrII:2648350-2648430 ( 67) CTGAGCTA 1 chrV:2262362-2262442 ( 45) CTGAGCTA 1 chrX:3621454-3621534 ( 11) CTGAGCTA 1 chrX:15615283-15615363 ( 42) CTGAGCTA 1 chrX:15755657-15755737 ( 52) CTGAGCTA 1 chrV:1797995-1798075 ( 4) CTGAGCTA 1 chrX:14328951-14329031 ( 50) CTGAGCTA 1 chrX:2980259-2980339 ( 6) CTGAGCTA 1 chrV:19618486-19618566 ( 45) CTGAGCTA 1 chrIV:1372073-1372153 ( 33) CTGAGCTA 1 chrV:17824504-17824584 ( 59) CTGAGCTA 1 chrX:1589691-1589771 ( 35) CTGAGCTA 1 chrX:868475-868555 ( 50) CTGAGCTA 1 chrX:9663428-9663508 ( 27) CTGAGCTA 1 chrII:1560321-1560401 ( 4) CTGAGCTA 1 chrX:15205279-15205359 ( 42) CTGAGCTA 1 chrV:18259205-18259285 ( 17) CTGAGCTA 1 chrI:11249367-11249447 ( 13) CTGAGCTA 1 chrV:16902387-16902467 ( 44) CTGAGCTA 1 chrX:12944243-12944323 ( 43) CTGAGCTA 1 chrX:15733694-15733774 ( 43) CTGAGCTA 1 chrX:603445-603525 ( 38) CTGAGCTA 1 chrX:15303631-15303711 ( 39) CTGAGCTA 1 chrX:16209277-16209357 ( 20) CTGAGCTA 1 chrX:14486234-14486314 ( 35) CTGAGCTA 1 chrII:1482593-1482673 ( 5) TTGAGCCA 1 chrII:1101192-1101272 ( 15) TTGAGCCA 1 chrII:749688-749768 ( 50) TTGAGCCA 1 chrII:1102109-1102189 ( 2) TTGAGCCA 1 chrII:1098943-1099023 ( 5) TTGAGCCA 1 chrV:19061188-19061268 ( 7) TTGAGCCA 1 chrII:1522117-1522197 ( 29) TTGAGCCA 1 chrIV:1481222-1481302 ( 34) TTGAGCCA 1 chrIV:482228-482308 ( 33) TTGAGCCA 1 chrV:19693158-19693238 ( 6) TTGAGCCA 1 chrV:19693559-19693639 ( 48) TTGAGCCA 1 chrX:15709257-15709337 ( 25) TTGAGCTA 1 chrI:12486581-12486661 ( 43) CTGCGCCA 1 chrI:13895225-13895305 ( 58) CTGCGCCA 1 chrII:1362580-1362660 ( 31) CTGCGCCA 1 chrV:17786023-17786103 ( 44) CTGCGCCA 1 chrIV:1490523-1490603 ( 69) CTGCGCTA 1 chrX:15124297-15124377 ( 46) CTGAGCTG 1 chrV:863086-863166 ( 3) TTGCGCCA 1 chrV:17716260-17716340 ( 28) TTGCGCCA 1 chrII:1086962-1087042 ( 32) TTGCGCCA 1 chrX:15080190-15080270 ( 35) CTGAGCGA 1 chrV:19653346-19653426 ( 6) CTTAGCCA 1 chrV:20449215-20449295 ( 41) CTGAGACA 1 chrIV:11838023-11838103 ( 33) CTGAGACA 1 chrX:15332979-15333059 ( 43) CTTAGCTA 1 chrV:14237840-14237920 ( 36) TTGAGCCG 1 chrIV:10323728-10323808 ( 5) TTGAGCCG 1 chrX:15697018-15697098 ( 3) TTGAGCCG 1 chrI:1808736-1808816 ( 48) CCGAGCTA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGAGCYA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.06276 E= 2.1e-091 -1304 180 -1304 -35 -1304 -424 -1304 185 -1304 -1304 214 -352 169 -124 -1304 -1304 -1304 -1304 217 -1304 -355 212 -1304 -1304 -1304 115 -422 84 177 -1304 -222 -1304 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGAGCYA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 84 E= 2.1e-091 0.000000 0.785714 0.000000 0.214286 0.000000 0.011905 0.000000 0.988095 0.000000 0.000000 0.976190 0.023810 0.904762 0.095238 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.023810 0.976190 0.000000 0.000000 0.000000 0.500000 0.011905 0.488095 0.952381 0.000000 0.047619 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGAGCYA MEME-1 regular expression -------------------------------------------------------------------------------- [CT]TGAGC[CT]A -------------------------------------------------------------------------------- Time 5.44 secs. ******************************************************************************** ******************************************************************************** MOTIF TRGCTCAG MEME-2 width = 8 sites = 69 llr = 642 E-value = 2.2e-069 ******************************************************************************** -------------------------------------------------------------------------------- Motif TRGCTCAG MEME-2 Description -------------------------------------------------------------------------------- Simplified A :3::::a3 pos.-specific C :::a:a:: probability G :7a:1::7 matrix T a:::9::: bits 2.2 ** 2.0 ** * 1.7 * ** ** 1.5 * ** ** Relative 1.3 * ***** Entropy 1.1 ******** (13.4 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TGGCTCAG consensus A A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TRGCTCAG MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrV:19619825-19619905 35 1.16e-05 GTTGGATAAT TGGCTCAG TGGCTAACAG chrV:17935733-17935813 29 1.16e-05 GGTGTACAAG TGGCTCAG TCGGGTAGAC chrV:19579664-19579744 49 1.16e-05 TGTGCCGTGG TGGCTCAG TAGGGTAGCG chrV:19398558-19398638 35 1.16e-05 AGCGAGCCAG TGGCTCAG TCGGGTAGGG chrI:12610361-12610441 68 1.16e-05 TATGAAcaaa tggctcag tgcaa chrV:18370158-18370238 52 1.16e-05 TGGGTCAAGG TGGCTCAG GTGGGTAGAG chrV:17691520-17691600 63 1.16e-05 TTTGCCCTCA TGGCTCAG TTGGGTAGAG chrV:17684636-17684716 39 1.16e-05 TTGGTCTCGG TGGCTCAG TAGGGTAGAG chrV:20279473-20279553 33 1.16e-05 TGCGTGAAAG TGGCTCAG TAGGGAAGAG chrV:10772047-10772127 24 1.16e-05 TAAGGACATG TGGCTCAG TGGTAGAATA chrII:755144-755224 4 1.16e-05 TTT TGGCTCAG CTGGGTAGAG chrV:19393966-19394046 69 1.16e-05 AAAAGTGAAG TGGCTCAG TTGG chrIV:1148547-1148627 35 1.16e-05 TGCGAAAATA TGGCTCAG TCGGTTAGCG chrV:20277082-20277162 27 1.16e-05 TTGGCAAAAG TGGCTCAG TCGGGAAGAG chrIII:2290400-2290480 44 1.16e-05 ATTGCACTTT TGGCTCAG TCGGTAACAG chrV:18367373-18367453 61 1.16e-05 TGAGCCGAAG TGGCTCAG GTGGGAAGAG chrIII:11472181-11472261 44 1.16e-05 TCGGCTCATG TGGCTCAG TCGGTAGTGG chrV:18612212-18612292 53 1.16e-05 tttgtccaac tggctcag tgcgattttc chrV:15522385-15522465 33 1.16e-05 CCAGACCGTa tggctcag tggctaagag chrV:20024119-20024199 41 1.16e-05 TGGGTCGCAG TGGCTCAG TAGGTAACAG chrI:11133822-11133902 72 2.61e-05 Agggggcaga tagctcag t chrV:16712968-16713048 58 2.61e-05 ggggacggga tagctcag tcggtagggt chrX:12312951-12313031 73 2.61e-05 ggggggcaga tagctcag chrX:2652724-2652804 30 2.61e-05 gggggcagga tagctcag tcggtagtgg chrI:596697-596777 33 2.61e-05 AAgggcagga tagctcag tcggtagtgg chrX:14957905-14957985 33 2.61e-05 Aggggcagga tagctcag tcggtagtgg chrV:4801522-4801602 29 2.61e-05 GGAGCGGGga tagctcag tcggtagtat chrII:13849128-13849208 37 2.61e-05 Agggggcaga tagctcag tcggtagtgg chrX:15997233-15997313 30 2.61e-05 Agggggcaaa tagctcag tcggtagtgg chrX:15717086-15717166 42 2.61e-05 Aggggcagga tagctcag tcggtagtgg chrX:15385361-15385441 30 2.61e-05 Agggggcaga tagctcag tcggtagtgg chrX:13346035-13346115 29 2.61e-05 AAggggcaga tagctcag tcggtagtgt chrII:4495185-4495265 72 2.61e-05 Agggggcaga tagctcag t chrX:15353061-15353141 35 2.61e-05 GCggggcaga tagctcag tcggtaatgg chrI:12283968-12284048 46 2.61e-05 GTggcaggga tagctcag tcggtagttg chrX:2416022-2416102 28 2.61e-05 GTTGCGGGAa tagctcag taggcaggga chrV:1632476-1632556 32 2.61e-05 TTTGCGTGga tagctcag tggatagtga chrI:196857-196937 71 2.61e-05 Ggggggcaga tagctcag tc chrX:8312509-8312589 34 2.61e-05 TTTGCAATga tagctcag tgggttgtgg chrII:1474973-1475053 22 4.07e-05 TGTAAAAACT TGGCTCAA CTGGTAAGAG chrV:19062886-19062966 36 4.07e-05 GTTGAATTTT TGGCTCAA CTGGGTACAG chrV:17690447-17690527 68 4.07e-05 GTTGACCCGC TGGCTCAA CTGGG chrII:3262486-3262566 24 4.07e-05 TGGCTCAATG TGGCTCAA TGAAATTTTT chrII:1098943-1099023 38 4.07e-05 TTAAGCTTTT TGGCTCAA CCGGTAACAG chrIV:1637469-1637549 46 4.07e-05 tttgcccgca tggctcaa tgcgggtccc chrV:19656183-19656263 27 4.07e-05 AGTGGCACGG TGGCTCAA CTGGGTAGCG chrX:1620259-1620339 23 4.07e-05 GACGGAGGCA TGGCTCAA TGGCAACGAG chrII:1473163-1473243 14 4.07e-05 GTCGACTTTT TGGCTCAA CTGGTAAGAG chrV:17716260-17716340 61 4.07e-05 ATTCTTCGAA TGGCTCAA CTGGGTAGAG chrV:19653346-19653426 37 4.07e-05 TTGGTCTCAG TGGCTCAA CTGGGAAGAG chrV:428226-428306 28 4.07e-05 GCGCGCGGGA TGGCTCAA CAGGTAAGAA chrII:1120436-1120516 26 4.07e-05 ATTGAATTTT TGGCTCAA CTGGTAAGAG chrIII:3198712-3198792 53 5.01e-05 AGTTGATTTT TGGCGCAG TGGCTAACAG chrV:17782841-17782921 30 5.01e-05 AGTGTACTTT TGGCGCAG TGGATAGCGG chrV:19623160-19623240 48 5.01e-05 TTTTCACGAA TGGCGCAG TGGGTAACAC chrIII:1983011-1983091 30 5.01e-05 AGAGCGCGCG TGGCGCAG TGGGTAAGAG chrIV:108349-108429 25 5.01e-05 ATTGCACAAG TGGCGCAG TAGGTAATAG chrI:11509365-11509445 28 5.01e-05 GCTTTCACCG TGGCGCAG TGGGTAAAGG chrX:15426630-15426710 70 6.85e-05 Agggggcaga tagctcaa tcg chrI:12420217-12420297 45 6.85e-05 GCGACCAGTT TAGCTCAA CAGGTAAGGA chrX:14761458-14761538 32 6.85e-05 gggagcagga tagctcaa tcggtagtgg chrIII:2130493-2130573 32 9.22e-05 ATTGCACTTT TGGCGCAA CTGGTAACCT chrIII:2137661-2137741 42 9.22e-05 ATTGCACCGG TGGCGCAA CTGGTTACAG chrV:19560087-19560167 52 9.22e-05 AGTGAAGAAG TGGCGCAA CTGGGTAGAG chrIV:4107599-4107679 53 9.22e-05 GGGTTATCTA TGGCGCAA AAGGTCGCGG chrIII:1662572-1662652 29 1.02e-04 AAGGTTCCAA CGGCTCAG CTGGTTACAG chrV:1425015-1425095 32 1.40e-04 TAAAATACAC Cagctcag tcggtagtgg chrX:11486508-11486588 71 1.67e-04 ggggcacggg tggctaag tg chrI:997228-997308 28 2.36e-04 TCAGGTGAGT TGGCTGAA AAAATTTGGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TRGCTCAG MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:19619825-19619905 1.2e-05 34_[+2]_38 chrV:17935733-17935813 1.2e-05 28_[+2]_44 chrV:19579664-19579744 1.2e-05 48_[+2]_24 chrV:19398558-19398638 1.2e-05 34_[+2]_38 chrI:12610361-12610441 1.2e-05 67_[+2]_5 chrV:18370158-18370238 1.2e-05 51_[+2]_21 chrV:17691520-17691600 1.2e-05 62_[+2]_10 chrV:17684636-17684716 1.2e-05 38_[+2]_34 chrV:20279473-20279553 1.2e-05 32_[+2]_40 chrV:10772047-10772127 1.2e-05 23_[+2]_49 chrII:755144-755224 1.2e-05 3_[+2]_69 chrV:19393966-19394046 1.2e-05 68_[+2]_4 chrIV:1148547-1148627 1.2e-05 34_[+2]_38 chrV:20277082-20277162 1.2e-05 26_[+2]_46 chrIII:2290400-2290480 1.2e-05 43_[+2]_29 chrV:18367373-18367453 1.2e-05 60_[+2]_12 chrIII:11472181-11472261 1.2e-05 43_[+2]_29 chrV:18612212-18612292 1.2e-05 52_[+2]_20 chrV:15522385-15522465 1.2e-05 32_[+2]_40 chrV:20024119-20024199 1.2e-05 40_[+2]_32 chrI:11133822-11133902 2.6e-05 71_[+2]_1 chrV:16712968-16713048 2.6e-05 57_[+2]_15 chrX:12312951-12313031 2.6e-05 72_[+2] chrX:2652724-2652804 2.6e-05 29_[+2]_43 chrI:596697-596777 2.6e-05 32_[+2]_40 chrX:14957905-14957985 2.6e-05 32_[+2]_40 chrV:4801522-4801602 2.6e-05 28_[+2]_44 chrII:13849128-13849208 2.6e-05 36_[+2]_36 chrX:15997233-15997313 2.6e-05 29_[+2]_43 chrX:15717086-15717166 2.6e-05 41_[+2]_31 chrX:15385361-15385441 2.6e-05 29_[+2]_43 chrX:13346035-13346115 2.6e-05 28_[+2]_44 chrII:4495185-4495265 2.6e-05 71_[+2]_1 chrX:15353061-15353141 2.6e-05 34_[+2]_38 chrI:12283968-12284048 2.6e-05 45_[+2]_27 chrX:2416022-2416102 2.6e-05 27_[+2]_45 chrV:1632476-1632556 2.6e-05 31_[+2]_41 chrI:196857-196937 2.6e-05 70_[+2]_2 chrX:8312509-8312589 2.6e-05 33_[+2]_39 chrII:1474973-1475053 4.1e-05 21_[+2]_51 chrV:19062886-19062966 4.1e-05 35_[+2]_37 chrV:17690447-17690527 4.1e-05 67_[+2]_5 chrII:3262486-3262566 4.1e-05 23_[+2]_49 chrII:1098943-1099023 4.1e-05 37_[+2]_35 chrIV:1637469-1637549 4.1e-05 45_[+2]_27 chrV:19656183-19656263 4.1e-05 26_[+2]_46 chrX:1620259-1620339 4.1e-05 22_[+2]_50 chrII:1473163-1473243 4.1e-05 13_[+2]_59 chrV:17716260-17716340 4.1e-05 60_[+2]_12 chrV:19653346-19653426 4.1e-05 36_[+2]_36 chrV:428226-428306 4.1e-05 27_[+2]_45 chrII:1120436-1120516 4.1e-05 25_[+2]_47 chrIII:3198712-3198792 5e-05 52_[+2]_20 chrV:17782841-17782921 5e-05 29_[+2]_43 chrV:19623160-19623240 5e-05 47_[+2]_25 chrIII:1983011-1983091 5e-05 29_[+2]_43 chrIV:108349-108429 5e-05 24_[+2]_48 chrI:11509365-11509445 5e-05 27_[+2]_45 chrX:15426630-15426710 6.9e-05 69_[+2]_3 chrI:12420217-12420297 6.9e-05 44_[+2]_28 chrX:14761458-14761538 6.9e-05 31_[+2]_41 chrIII:2130493-2130573 9.2e-05 31_[+2]_41 chrIII:2137661-2137741 9.2e-05 41_[+2]_31 chrV:19560087-19560167 9.2e-05 51_[+2]_21 chrIV:4107599-4107679 9.2e-05 52_[+2]_20 chrIII:1662572-1662652 0.0001 28_[+2]_44 chrV:1425015-1425095 0.00014 31_[+2]_41 chrX:11486508-11486588 0.00017 70_[+2]_2 chrI:997228-997308 0.00024 27_[+2]_45 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TRGCTCAG MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TRGCTCAG width=8 seqs=69 chrV:19619825-19619905 ( 35) TGGCTCAG 1 chrV:17935733-17935813 ( 29) TGGCTCAG 1 chrV:19579664-19579744 ( 49) TGGCTCAG 1 chrV:19398558-19398638 ( 35) TGGCTCAG 1 chrI:12610361-12610441 ( 68) TGGCTCAG 1 chrV:18370158-18370238 ( 52) TGGCTCAG 1 chrV:17691520-17691600 ( 63) TGGCTCAG 1 chrV:17684636-17684716 ( 39) TGGCTCAG 1 chrV:20279473-20279553 ( 33) TGGCTCAG 1 chrV:10772047-10772127 ( 24) TGGCTCAG 1 chrII:755144-755224 ( 4) TGGCTCAG 1 chrV:19393966-19394046 ( 69) TGGCTCAG 1 chrIV:1148547-1148627 ( 35) TGGCTCAG 1 chrV:20277082-20277162 ( 27) TGGCTCAG 1 chrIII:2290400-2290480 ( 44) TGGCTCAG 1 chrV:18367373-18367453 ( 61) TGGCTCAG 1 chrIII:11472181-11472261 ( 44) TGGCTCAG 1 chrV:18612212-18612292 ( 53) TGGCTCAG 1 chrV:15522385-15522465 ( 33) TGGCTCAG 1 chrV:20024119-20024199 ( 41) TGGCTCAG 1 chrI:11133822-11133902 ( 72) TAGCTCAG 1 chrV:16712968-16713048 ( 58) TAGCTCAG 1 chrX:12312951-12313031 ( 73) TAGCTCAG 1 chrX:2652724-2652804 ( 30) TAGCTCAG 1 chrI:596697-596777 ( 33) TAGCTCAG 1 chrX:14957905-14957985 ( 33) TAGCTCAG 1 chrV:4801522-4801602 ( 29) TAGCTCAG 1 chrII:13849128-13849208 ( 37) TAGCTCAG 1 chrX:15997233-15997313 ( 30) TAGCTCAG 1 chrX:15717086-15717166 ( 42) TAGCTCAG 1 chrX:15385361-15385441 ( 30) TAGCTCAG 1 chrX:13346035-13346115 ( 29) TAGCTCAG 1 chrII:4495185-4495265 ( 72) TAGCTCAG 1 chrX:15353061-15353141 ( 35) TAGCTCAG 1 chrI:12283968-12284048 ( 46) TAGCTCAG 1 chrX:2416022-2416102 ( 28) TAGCTCAG 1 chrV:1632476-1632556 ( 32) TAGCTCAG 1 chrI:196857-196937 ( 71) TAGCTCAG 1 chrX:8312509-8312589 ( 34) TAGCTCAG 1 chrII:1474973-1475053 ( 22) TGGCTCAA 1 chrV:19062886-19062966 ( 36) TGGCTCAA 1 chrV:17690447-17690527 ( 68) TGGCTCAA 1 chrII:3262486-3262566 ( 24) TGGCTCAA 1 chrII:1098943-1099023 ( 38) TGGCTCAA 1 chrIV:1637469-1637549 ( 46) TGGCTCAA 1 chrV:19656183-19656263 ( 27) TGGCTCAA 1 chrX:1620259-1620339 ( 23) TGGCTCAA 1 chrII:1473163-1473243 ( 14) TGGCTCAA 1 chrV:17716260-17716340 ( 61) TGGCTCAA 1 chrV:19653346-19653426 ( 37) TGGCTCAA 1 chrV:428226-428306 ( 28) TGGCTCAA 1 chrII:1120436-1120516 ( 26) TGGCTCAA 1 chrIII:3198712-3198792 ( 53) TGGCGCAG 1 chrV:17782841-17782921 ( 30) TGGCGCAG 1 chrV:19623160-19623240 ( 48) TGGCGCAG 1 chrIII:1983011-1983091 ( 30) TGGCGCAG 1 chrIV:108349-108429 ( 25) TGGCGCAG 1 chrI:11509365-11509445 ( 28) TGGCGCAG 1 chrX:15426630-15426710 ( 70) TAGCTCAA 1 chrI:12420217-12420297 ( 45) TAGCTCAA 1 chrX:14761458-14761538 ( 32) TAGCTCAA 1 chrIII:2130493-2130573 ( 32) TGGCGCAA 1 chrIII:2137661-2137741 ( 42) TGGCGCAA 1 chrV:19560087-19560167 ( 52) TGGCGCAA 1 chrIV:4107599-4107679 ( 53) TGGCGCAA 1 chrIII:1662572-1662652 ( 29) CGGCTCAG 1 chrV:1425015-1425095 ( 32) CAGCTCAG 1 chrX:11486508-11486588 ( 71) TGGCTAAG 1 chrI:997228-997308 ( 28) TGGCTGAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TRGCTCAG MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.12809 E= 2.2e-069 -1275 -296 -1275 183 25 -1275 159 -1275 -1275 -1275 217 -1275 -1275 215 -1275 -1275 -1275 -1275 -61 165 -427 211 -393 -1275 184 -1275 -1275 -1275 12 -1275 165 -1275 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TRGCTCAG MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 69 E= 2.2e-069 0.000000 0.028986 0.000000 0.971014 0.333333 0.000000 0.666667 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.144928 0.855072 0.014493 0.971014 0.014493 0.000000 1.000000 0.000000 0.000000 0.000000 0.304348 0.000000 0.695652 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TRGCTCAG MEME-2 regular expression -------------------------------------------------------------------------------- T[GA]GCTCA[GA] -------------------------------------------------------------------------------- Time 10.12 secs. ******************************************************************************** ******************************************************************************** MOTIF CCACTACC MEME-3 width = 8 sites = 62 llr = 554 E-value = 3.1e-047 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCACTACC MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::6::9:: pos.-specific C 8a:a::8a probability G 1:2:::2: matrix T 1:1:a::: bits 2.2 * * * 2.0 * * * 1.7 * ** * 1.5 * ** * Relative 1.3 ** ***** Entropy 1.1 ** ***** (12.9 bits) 0.9 ** ***** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CCACTACC consensus G G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCACTACC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:14972324-14972404 46 1.23e-05 agcggcccaa ccactacc gactgagcta chrX:11936197-11936277 29 1.23e-05 ccagcggcca ccactacc gactgagcta chrIV:541486-541566 30 1.23e-05 ctagcggcca ccactacc gactgagcta chrV:15297667-15297747 40 1.23e-05 ctagcggcca ccactacc gactgagcta chrV:506869-506949 27 1.23e-05 ctagcggcca ccactacc gactgagcta chrX:15334514-15334594 36 1.23e-05 ctagcggcca ccactacc gactgagcta chrX:15120476-15120556 45 1.23e-05 ctagcggcca ccactacc gactgagcta chrX:11283278-11283358 4 1.23e-05 cca ccactacc gactgagcta chrV:2262362-2262442 35 1.23e-05 ctagcggaca ccactacc gactgagcta chrX:3621454-3621534 1 1.23e-05 . ccactacc gactgagcta chrX:15615283-15615363 32 1.23e-05 ctagcggcca ccactacc gactgagcta chrX:15755657-15755737 42 1.23e-05 ctagcggcca ccactacc gactgagcta chrX:14328951-14329031 40 1.23e-05 ccagcggcca ccactacc cactgagcta chrI:1808736-1808816 38 1.23e-05 ctagcggcca ccactacc gaccgagcta chrIV:1372073-1372153 23 1.23e-05 ctagcggcca ccactacc gactgagcta chrX:15332979-15333059 33 1.23e-05 ctagcggcca ccactacc gacttagcta chrX:868475-868555 40 1.23e-05 ctagcggcca ccactacc gactgagcta chrX:15124297-15124377 36 1.23e-05 ctagcggcca ccactacc gactgagctg chrI:14322719-14322799 69 1.23e-05 ctggtggtta ccactacc tact chrX:15205279-15205359 32 1.23e-05 ctagcggcca ccactacc gactgagcta chrV:18259205-18259285 7 1.23e-05 cggcca ccactacc gactgagcta chrI:11249367-11249447 3 1.23e-05 ca ccactacc gactgagcta chrV:16902387-16902467 34 1.23e-05 ctagcggcca ccactacc gactgagcta chrX:12944243-12944323 33 1.23e-05 ctagcggtca ccactacc gactgagcta chrII:6797934-6798014 72 1.23e-05 gaaactcacg ccactacc a chrX:15709257-15709337 15 1.23e-05 ctatccgcca ccactacc gattgagcta chrX:15733694-15733774 33 1.23e-05 ctagcggcca ccactacc gactgagcta chrX:603445-603525 28 1.23e-05 ctagcggcca ccactacc gactgagcta chrX:12220815-12220895 30 1.23e-05 cagtgctaca ccactacc atttagccac chrV:19669663-19669743 39 4.63e-05 CATAACCATT CCTCTACC CGACTGAGCC chrV:17694113-17694193 28 4.63e-05 CATAGCTGAA CCTCTACC CGACTGAGCC chrV:20223888-20223968 32 4.63e-05 CAGAGGCATC CCTCTACC CACCTGAGCC chrV:19057482-19057562 69 4.63e-05 ACCAGTCAAA CCTCTACC CACT chrV:19557641-19557721 45 4.63e-05 CATAGCCGAA CCTCTACC CAACTGAGCC chrV:20222660-20222740 32 4.63e-05 CTAACCCCTA CCTCTACC CATCTGAGCC chrX:2652724-2652804 51 5.60e-05 gtagtggtgg ccgctagc aatctgcagg chrI:596697-596777 54 5.60e-05 gtagtggtgg ccgctagc aatctggagg chrX:14957905-14957985 54 5.60e-05 gtagtggtgg ccgctagc aatctggagg chrII:13849128-13849208 58 5.60e-05 gtagtggtgg ccgctagc agtctggagg chrX:15997233-15997313 51 5.60e-05 gtagtggtgg ccgctagc aatctggagg chrX:15717086-15717166 63 5.60e-05 gtagtggtgg ccgctagc agtctggagg chrX:15385361-15385441 51 5.60e-05 gtagtggtgg ccgctagc aatctggagg chrX:13346035-13346115 50 5.60e-05 gtagtgttgg ccgctagc agtctggagg chrX:15353061-15353141 56 5.60e-05 gtaatggtgg ccgctagc aatctggagg chrV:1425015-1425095 53 5.60e-05 gtagtggccg ccgctagc aatctggagg chrX:14761458-14761538 53 5.60e-05 gtagtggtaa ccgctagc aatctggagg chrX:14517265-14517345 4 8.31e-05 aat tcactacc cactttccga chrIV:1481222-1481302 42 8.31e-05 CATTGAGCCA TCACTACC AATTTTTAAA chrX:9663428-9663508 17 8.31e-05 ctagaggcca tcactacc gactgagcta chrX:15080190-15080270 12 8.31e-05 taaaccaaat tcactacc cgctttccga chrX:1713739-1713819 28 1.05e-04 CTGGTTCGAC CCACTCCC CCGCCTCAGA chrX:15303631-15303711 29 1.15e-04 ctagcggcca gcgctacc ggctgagcta chrIII:1983011-1983091 10 1.27e-04 CATACAGTG GCACTAGC GCAGAGCGCG chrX:16212781-16212861 34 1.61e-04 GAGCTTAACT CCGCTCCC AAAAAAAAAA chrV:17786023-17786103 34 1.61e-04 CTGGTGGAGC TCACTAGC CACTGCGCCA chrV:19706461-19706541 30 1.83e-04 CATGGCCAAA GCTCTACC CGACTGAGCC chrX:14700548-14700628 47 1.83e-04 ctagcggtca ccactgcc gactgagcta chrX:16209277-16209357 10 1.83e-04 CAGTCCTCC GCTCTACC AACTGAGCTA chrX:14486234-14486314 25 1.83e-04 AGAGTCTGGT GCTCTACC GACTGAGCTA chrX:17078033-17078113 2 2.03e-04 A CCACTCGC GGAAAACGAT chrV:17824504-17824584 49 2.03e-04 ctagcggaca ccaccacc gactgagcta chrX:15805065-15805145 9 2.15e-04 ggattgct ccacttcc gaaaataagc -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCACTACC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:14972324-14972404 1.2e-05 45_[+3]_27 chrX:11936197-11936277 1.2e-05 28_[+3]_44 chrIV:541486-541566 1.2e-05 29_[+3]_43 chrV:15297667-15297747 1.2e-05 39_[+3]_33 chrV:506869-506949 1.2e-05 26_[+3]_46 chrX:15334514-15334594 1.2e-05 35_[+3]_37 chrX:15120476-15120556 1.2e-05 44_[+3]_28 chrX:11283278-11283358 1.2e-05 3_[+3]_69 chrV:2262362-2262442 1.2e-05 34_[+3]_38 chrX:3621454-3621534 1.2e-05 [+3]_72 chrX:15615283-15615363 1.2e-05 31_[+3]_41 chrX:15755657-15755737 1.2e-05 41_[+3]_31 chrX:14328951-14329031 1.2e-05 39_[+3]_33 chrI:1808736-1808816 1.2e-05 37_[+3]_35 chrIV:1372073-1372153 1.2e-05 22_[+3]_50 chrX:15332979-15333059 1.2e-05 32_[+3]_40 chrX:868475-868555 1.2e-05 39_[+3]_33 chrX:15124297-15124377 1.2e-05 35_[+3]_37 chrI:14322719-14322799 1.2e-05 68_[+3]_4 chrX:15205279-15205359 1.2e-05 31_[+3]_41 chrV:18259205-18259285 1.2e-05 6_[+3]_66 chrI:11249367-11249447 1.2e-05 2_[+3]_70 chrV:16902387-16902467 1.2e-05 33_[+3]_39 chrX:12944243-12944323 1.2e-05 32_[+3]_40 chrII:6797934-6798014 1.2e-05 71_[+3]_1 chrX:15709257-15709337 1.2e-05 14_[+3]_58 chrX:15733694-15733774 1.2e-05 32_[+3]_40 chrX:603445-603525 1.2e-05 27_[+3]_45 chrX:12220815-12220895 1.2e-05 29_[+3]_43 chrV:19669663-19669743 4.6e-05 38_[+3]_34 chrV:17694113-17694193 4.6e-05 27_[+3]_45 chrV:20223888-20223968 4.6e-05 31_[+3]_41 chrV:19057482-19057562 4.6e-05 68_[+3]_4 chrV:19557641-19557721 4.6e-05 44_[+3]_28 chrV:20222660-20222740 4.6e-05 31_[+3]_41 chrX:2652724-2652804 5.6e-05 50_[+3]_22 chrI:596697-596777 5.6e-05 53_[+3]_19 chrX:14957905-14957985 5.6e-05 53_[+3]_19 chrII:13849128-13849208 5.6e-05 57_[+3]_15 chrX:15997233-15997313 5.6e-05 50_[+3]_22 chrX:15717086-15717166 5.6e-05 62_[+3]_10 chrX:15385361-15385441 5.6e-05 50_[+3]_22 chrX:13346035-13346115 5.6e-05 49_[+3]_23 chrX:15353061-15353141 5.6e-05 55_[+3]_17 chrV:1425015-1425095 5.6e-05 52_[+3]_20 chrX:14761458-14761538 5.6e-05 52_[+3]_20 chrX:14517265-14517345 8.3e-05 3_[+3]_69 chrIV:1481222-1481302 8.3e-05 41_[+3]_31 chrX:9663428-9663508 8.3e-05 16_[+3]_56 chrX:15080190-15080270 8.3e-05 11_[+3]_61 chrX:1713739-1713819 0.0001 27_[+3]_45 chrX:15303631-15303711 0.00011 28_[+3]_44 chrIII:1983011-1983091 0.00013 9_[+3]_63 chrX:16212781-16212861 0.00016 33_[+3]_39 chrV:17786023-17786103 0.00016 33_[+3]_39 chrV:19706461-19706541 0.00018 29_[+3]_43 chrX:14700548-14700628 0.00018 46_[+3]_26 chrX:16209277-16209357 0.00018 9_[+3]_63 chrX:14486234-14486314 0.00018 24_[+3]_48 chrX:17078033-17078113 0.0002 1_[+3]_71 chrV:17824504-17824584 0.0002 48_[+3]_24 chrX:15805065-15805145 0.00021 8_[+3]_64 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCACTACC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCACTACC width=8 seqs=62 chrX:14972324-14972404 ( 46) CCACTACC 1 chrX:11936197-11936277 ( 29) CCACTACC 1 chrIV:541486-541566 ( 30) CCACTACC 1 chrV:15297667-15297747 ( 40) CCACTACC 1 chrV:506869-506949 ( 27) CCACTACC 1 chrX:15334514-15334594 ( 36) CCACTACC 1 chrX:15120476-15120556 ( 45) CCACTACC 1 chrX:11283278-11283358 ( 4) CCACTACC 1 chrV:2262362-2262442 ( 35) CCACTACC 1 chrX:3621454-3621534 ( 1) CCACTACC 1 chrX:15615283-15615363 ( 32) CCACTACC 1 chrX:15755657-15755737 ( 42) CCACTACC 1 chrX:14328951-14329031 ( 40) CCACTACC 1 chrI:1808736-1808816 ( 38) CCACTACC 1 chrIV:1372073-1372153 ( 23) CCACTACC 1 chrX:15332979-15333059 ( 33) CCACTACC 1 chrX:868475-868555 ( 40) CCACTACC 1 chrX:15124297-15124377 ( 36) CCACTACC 1 chrI:14322719-14322799 ( 69) CCACTACC 1 chrX:15205279-15205359 ( 32) CCACTACC 1 chrV:18259205-18259285 ( 7) CCACTACC 1 chrI:11249367-11249447 ( 3) CCACTACC 1 chrV:16902387-16902467 ( 34) CCACTACC 1 chrX:12944243-12944323 ( 33) CCACTACC 1 chrII:6797934-6798014 ( 72) CCACTACC 1 chrX:15709257-15709337 ( 15) CCACTACC 1 chrX:15733694-15733774 ( 33) CCACTACC 1 chrX:603445-603525 ( 28) CCACTACC 1 chrX:12220815-12220895 ( 30) CCACTACC 1 chrV:19669663-19669743 ( 39) CCTCTACC 1 chrV:17694113-17694193 ( 28) CCTCTACC 1 chrV:20223888-20223968 ( 32) CCTCTACC 1 chrV:19057482-19057562 ( 69) CCTCTACC 1 chrV:19557641-19557721 ( 45) CCTCTACC 1 chrV:20222660-20222740 ( 32) CCTCTACC 1 chrX:2652724-2652804 ( 51) CCGCTAGC 1 chrI:596697-596777 ( 54) CCGCTAGC 1 chrX:14957905-14957985 ( 54) CCGCTAGC 1 chrII:13849128-13849208 ( 58) CCGCTAGC 1 chrX:15997233-15997313 ( 51) CCGCTAGC 1 chrX:15717086-15717166 ( 63) CCGCTAGC 1 chrX:15385361-15385441 ( 51) CCGCTAGC 1 chrX:13346035-13346115 ( 50) CCGCTAGC 1 chrX:15353061-15353141 ( 56) CCGCTAGC 1 chrV:1425015-1425095 ( 53) CCGCTAGC 1 chrX:14761458-14761538 ( 53) CCGCTAGC 1 chrX:14517265-14517345 ( 4) TCACTACC 1 chrIV:1481222-1481302 ( 42) TCACTACC 1 chrX:9663428-9663508 ( 17) TCACTACC 1 chrX:15080190-15080270 ( 12) TCACTACC 1 chrX:1713739-1713819 ( 28) CCACTCCC 1 chrX:15303631-15303711 ( 29) GCGCTACC 1 chrIII:1983011-1983091 ( 10) GCACTAGC 1 chrX:16212781-16212861 ( 34) CCGCTCCC 1 chrV:17786023-17786103 ( 34) TCACTAGC 1 chrV:19706461-19706541 ( 30) GCTCTACC 1 chrX:14700548-14700628 ( 47) CCACTGCC 1 chrX:16209277-16209357 ( 10) GCTCTACC 1 chrX:14486234-14486314 ( 25) GCTCTACC 1 chrX:17078033-17078113 ( 2) CCACTCGC 1 chrV:17824504-17824584 ( 49) CCACCACC 1 chrX:15805065-15805145 ( 9) CCACTTCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCACTACC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.90467 E= 3.1e-047 -1260 190 -146 -176 -1260 215 -1260 -1260 121 -1260 -8 -91 -1260 215 -1260 -1260 -1260 -380 -1260 185 172 -222 -378 -408 -1260 178 3 -1260 -1260 215 -1260 -1260 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCACTACC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 62 E= 3.1e-047 0.000000 0.838710 0.080645 0.080645 0.000000 1.000000 0.000000 0.000000 0.645161 0.000000 0.209677 0.145161 0.000000 1.000000 0.000000 0.000000 0.000000 0.016129 0.000000 0.983871 0.919355 0.048387 0.016129 0.016129 0.000000 0.774194 0.225806 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCACTACC MEME-3 regular expression -------------------------------------------------------------------------------- CC[AG]CTA[CG]C -------------------------------------------------------------------------------- Time 15.16 secs. ******************************************************************************** ******************************************************************************** MOTIF TTTVAAAA MEME-4 width = 8 sites = 89 llr = 654 E-value = 7.8e-029 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTTVAAAA MEME-4 Description -------------------------------------------------------------------------------- Simplified A 2::2aaa9 pos.-specific C :113:::: probability G 1::4:::: matrix T 8991:::1 bits 2.2 2.0 1.7 *** 1.5 * **** Relative 1.3 ** **** Entropy 1.1 ** **** (10.6 bits) 0.9 *** **** 0.7 *** **** 0.4 *** **** 0.2 ******** 0.0 -------- Multilevel TTTGAAAA consensus C sequence A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTVAAAA MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrV:19706461-19706541 67 2.78e-05 CTTTTTTTTT TTTGAAAA AAACGT chrV:20449215-20449295 61 2.78e-05 tgggcgaaat tttgaaaa attctgaaTT chrIII:1046910-1046990 21 2.78e-05 TTTCACCGAA TTTGAAAA TTTGCACCCG chrIII:6066601-6066681 60 2.78e-05 AGTGATCTAA TTTGAAAA AGTCTCAAAA chrV:19579664-19579744 31 2.78e-05 TTTTCGAAAT TTTGAAAA TGTGCCGTGG chrV:19664213-19664293 19 2.78e-05 TTGAACACCT TTTGAAAA TCGTTTAAAA chrIII:1662572-1662652 12 2.78e-05 AAAATTAGAT TTTGAAAA AGGTTCCAAC chrV:19560087-19560167 35 2.78e-05 TAGGCGATAT TTTGAAAA GTGAAGAAGT chrIV:108349-108429 7 2.78e-05 TGAAAA TTTGAAAA ATTGCACAAG chrII:1362580-1362660 51 2.78e-05 AATTCAATTT TTTGAAAA ATTCAAAAAA chrX:15755657-15755737 72 2.78e-05 tgcccAAttt tttgaaaa g chrV:19059213-19059293 4 2.78e-05 TTT TTTGAAAA ACATCTATAA chrX:15332979-15333059 67 2.78e-05 ctcTTTTTTT TTTGAAAA CTTTTT chrV:18367373-18367453 42 2.78e-05 TTTTCACCAC TTTGAAAA ATGAGCCGAA chrIV:4107599-4107679 5 2.78e-05 ATTT TTTGAAAA ATTTGAGACA chrV:17782841-17782921 11 5.59e-05 TATAAGCAGC TTTCAAAA AAGTGTACTT chrIV:1630441-1630521 48 5.59e-05 tcggactaat tttcaaaa ctTACCTTTT chrV:18370158-18370238 32 5.59e-05 ATCTTGTCAA TTTCAAAA AATGGGTCAA chrII:1102109-1102189 20 5.59e-05 AAACTCCAGT TTTCAAAA ATCCTAAAAA chrX:16172229-16172309 69 5.59e-05 AGTAACATCA TTTCAAAA ACAA chrX:15385361-15385441 13 5.59e-05 AGGATTTAAC TTTCAAAA gggggcagat chrII:4495185-4495265 9 5.59e-05 AAAACGAT TTTCAAAA TATTTTTGTT chrV:20031117-20031197 13 5.59e-05 AGCCATCACT TTTCAAAA TGAGCGACAG chrX:16371094-16371174 10 5.59e-05 AATTAATTT TTTCAAAA CCACCGGGCG chrII:1086962-1087042 58 5.59e-05 CTTTTTCAAA TTTCAAAA AAAAACGATA chrV:19693559-19693639 67 5.59e-05 TTTCACCATT TTTCAAAA ATGCTG chrI:197112-197192 57 5.59e-05 cctttaattc tttCAAAA CTAATTTTTT chrX:12967206-12967286 56 5.59e-05 TCAAATATTT TTTCAAAA CGTCCGGATT chrII:1482593-1482673 25 9.09e-05 AAGACAAAAT TTTAAAAA TGAAAAAAAA chrIII:12297521-12297601 63 9.09e-05 AATTAGATTT TTTAAAAA CATACAGAAA chrI:9384989-9385069 6 9.09e-05 TTTAA TTTAAAAA AAACATGATA chrIV:1148547-1148627 13 9.09e-05 TCAAAATCCA TTTAAAAA TTTTTGCGAA chrIV:1481222-1481302 54 9.09e-05 ACTACCAATT TTTAAAAA ATTTGATGTT chrIII:2290400-2290480 27 9.09e-05 TTGTGGAAAA TTTAAAAA TTGCACTTTT chrV:17786023-17786103 65 9.09e-05 GTGAATTTTC TTTAAAAA TTTTTAAA chrV:20024119-20024199 22 9.09e-05 ATAAATTATA TTTAAAAA ATGGGTCGCA chrII:6797934-6798014 2 9.09e-05 c tttaaaaa ttaaaaaaaa chrX:12013762-12013842 67 9.09e-05 ACCCGGTGGT TTTAAAAA AATTAA chrIII:7770719-7770799 23 9.09e-05 AAAAAAAATT TTTAAAAa agtttaaatt chrIII:3198712-3198792 36 1.25e-04 TTTTGGAAAG TTTTAAAA GTTGATTTTT chrX:17233429-17233509 56 1.25e-04 ATAATTTTTT TTTTAAAA CTGCGATCGG chrV:17684636-17684716 21 1.25e-04 TTCCCGCAAA TTTTAAAA TTGGTCTCGG chrX:15426630-15426710 8 1.25e-04 CATGGTG TTTTAAAA TTATGCAATA chrV:20222660-20222740 62 1.25e-04 TGACGCCCAT TTTTAAAA TTTGCTTAAA chrIV:541486-541566 59 1.54e-04 ctgccccTAA ATTGAAAA TATGAATTTC chrV:19398558-19398638 18 1.54e-04 GAAAACTTCA ATTGAAAA GCGAGCCAGT chrX:16308656-16308736 38 1.54e-04 cccagccttt attgaaaa gtagagcaat chrV:19393966-19394046 31 1.54e-04 ATAATGATAA ATTGAAAA AATTTCAGAA chrII:1091435-1091515 18 2.05e-04 AAATTTAGAA ATTCAAAA AAACCGCTCC chrIII:2137661-2137741 25 2.05e-04 TTTCGAAATT TTCGAAAA TTGCACCGGT chrII:1476165-1476245 73 2.05e-04 AACTCAAATT TTCGAAAA chrX:11283278-11283358 55 2.05e-04 CAACTCAAAT TTCGAAAA GTATTTTGAA chrX:3621454-3621534 64 2.05e-04 CAATAAAACT ATTCAAAA CATTGCGCA chrIII:2130493-2130573 15 2.87e-04 TTTTCACAAA ATTAAAAA TTGCACTTTT chrX:15029864-15029944 29 2.87e-04 gtagaggctg gttgaaaa cctagggggt chrV:19128709-19128789 63 2.87e-04 ACTCCATAGG GTTGAAAA AATCACAATT chrII:749688-749768 70 2.87e-04 ACTACACGTT TTCCAAAA AAA chrV:4801522-4801602 8 2.87e-04 CGCAATT ATTAAAAA CTAGGAGCGG chrX:15717086-15717166 21 2.87e-04 AGCATATAAG TTCCAAAA ATAAggggca chrV:20223888-20223968 67 2.87e-04 CATTTTTTTT TTCCAAAA AAATTT chrIII:7821699-7821779 63 2.87e-04 GAGTATCAGA TTCCAAAA GAATTTCTCA chrII:1522117-1522197 53 2.87e-04 CCAATAAAAA ATTAAAAA AATTTTCGGA chrI:196857-196937 38 2.87e-04 TTTTTTAAAT ATTAAAAA AATTCAACAA chrX:16350182-16350262 1 2.87e-04 . GTTGAAAA CAATAAAAAT chrV:20277082-20277162 9 3.10e-04 CGGAGAGA TCTGAAAA TTGGCAAAAG chrI:8781186-8781266 14 3.10e-04 GCCCTTTGAG TCTGAAAA CTCATGCCTT chrI:9563900-9563980 34 3.10e-04 GGGCACTGAT TCTGAAAA ATGTGCATCT chrX:15426894-15426974 66 3.62e-04 ttTATGTTCC TTCAAAAA AGACAGC chrV:20219577-20219657 66 4.12e-04 TGCGACCCAT TCTCAAAA TTTCGAA chrV:18612212-18612292 34 4.12e-04 TTAAACATtt tttgaaat ttttgtccaa chrX:11486508-11486588 36 4.40e-04 TGACCAGACG GTTAAAAA TAGATTCTGG chrI:12610361-12610441 33 4.40e-04 AAGATCCATT GTTAAAAA ATCCCGAAAA chrI:14243894-14243974 65 4.40e-04 TTGATTATTT GTTAAAAA AAAAAACT chrV:20280513-20280593 64 4.97e-04 TGCGACCCAT TTTCAAAT TCCACCAAA chrV:19619825-19619905 10 4.97e-04 ATCGATAAC TCTAAAAA TAAAAAAGTT chrV:17690447-17690527 2 4.97e-04 G TCTAAAAA TGAAAATGCC chrI:12609967-12610047 65 4.97e-04 TGATTGTTTT TTTCAAAT GGGACATT chrX:2652724-2652804 9 5.32e-04 CTAGAATA ATTTAAAA CGTgggggca chrX:15964050-15964130 21 5.32e-04 TATATATTTC ATTTAAAA CTCAAAAACC chrX:1107040-1107120 20 5.32e-04 TATATATTTT ATTTAAAA CTCAAAAACC chrV:19669663-19669743 72 5.66e-04 GACAATGTTC TTTAAAAT T chrIV:9240292-9240372 28 6.17e-04 TTAATGCGAA ATCGAAAA TTGCACATTA chrX:15124297-15124377 67 6.44e-04 tgccACTTTT TTTGAATA ATTCAC chrIV:482228-482308 69 7.52e-04 ATTTTATTAA TTTCAATA TTAA chrX:10942603-10942683 37 7.98e-04 CCCCCCTCAC TTGGAAAA TTGCTTGGAA chrV:14766150-14766230 47 8.90e-04 ataaaagtaa tttggaaa ctttttggaa chrIV:1372073-1372153 70 9.57e-04 TACTGGACAG TTTTAAAT CAG chrX:12944243-12944323 71 1.08e-03 GAAATACAAT TTTGTAAA GC chrI:9558765-9558845 14 1.14e-03 GATGCACATT TTTCAGAA TCAGTGCCCC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTVAAAA MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:19706461-19706541 2.8e-05 66_[+4]_6 chrV:20449215-20449295 2.8e-05 60_[+4]_12 chrIII:1046910-1046990 2.8e-05 20_[+4]_52 chrIII:6066601-6066681 2.8e-05 59_[+4]_13 chrV:19579664-19579744 2.8e-05 30_[+4]_42 chrV:19664213-19664293 2.8e-05 18_[+4]_54 chrIII:1662572-1662652 2.8e-05 11_[+4]_61 chrV:19560087-19560167 2.8e-05 34_[+4]_38 chrIV:108349-108429 2.8e-05 6_[+4]_66 chrII:1362580-1362660 2.8e-05 50_[+4]_22 chrX:15755657-15755737 2.8e-05 71_[+4]_1 chrV:19059213-19059293 2.8e-05 3_[+4]_69 chrX:15332979-15333059 2.8e-05 66_[+4]_6 chrV:18367373-18367453 2.8e-05 41_[+4]_31 chrIV:4107599-4107679 2.8e-05 4_[+4]_68 chrV:17782841-17782921 5.6e-05 10_[+4]_62 chrIV:1630441-1630521 5.6e-05 47_[+4]_25 chrV:18370158-18370238 5.6e-05 31_[+4]_41 chrII:1102109-1102189 5.6e-05 19_[+4]_53 chrX:16172229-16172309 5.6e-05 68_[+4]_4 chrX:15385361-15385441 5.6e-05 12_[+4]_60 chrII:4495185-4495265 5.6e-05 8_[+4]_64 chrV:20031117-20031197 5.6e-05 12_[+4]_60 chrX:16371094-16371174 5.6e-05 9_[+4]_63 chrII:1086962-1087042 5.6e-05 57_[+4]_15 chrV:19693559-19693639 5.6e-05 66_[+4]_6 chrI:197112-197192 5.6e-05 56_[+4]_16 chrX:12967206-12967286 5.6e-05 55_[+4]_17 chrII:1482593-1482673 9.1e-05 24_[+4]_48 chrIII:12297521-12297601 9.1e-05 62_[+4]_10 chrI:9384989-9385069 9.1e-05 5_[+4]_67 chrIV:1148547-1148627 9.1e-05 12_[+4]_60 chrIV:1481222-1481302 9.1e-05 53_[+4]_19 chrIII:2290400-2290480 9.1e-05 26_[+4]_46 chrV:17786023-17786103 9.1e-05 64_[+4]_8 chrV:20024119-20024199 9.1e-05 21_[+4]_51 chrII:6797934-6798014 9.1e-05 1_[+4]_71 chrX:12013762-12013842 9.1e-05 66_[+4]_6 chrIII:7770719-7770799 9.1e-05 22_[+4]_50 chrIII:3198712-3198792 0.00013 35_[+4]_37 chrX:17233429-17233509 0.00013 55_[+4]_17 chrV:17684636-17684716 0.00013 20_[+4]_52 chrX:15426630-15426710 0.00013 7_[+4]_65 chrV:20222660-20222740 0.00013 61_[+4]_11 chrIV:541486-541566 0.00015 58_[+4]_14 chrV:19398558-19398638 0.00015 17_[+4]_55 chrX:16308656-16308736 0.00015 37_[+4]_35 chrV:19393966-19394046 0.00015 30_[+4]_42 chrII:1091435-1091515 0.00021 17_[+4]_55 chrIII:2137661-2137741 0.00021 24_[+4]_48 chrII:1476165-1476245 0.00021 72_[+4] chrX:11283278-11283358 0.00021 54_[+4]_18 chrX:3621454-3621534 0.00021 63_[+4]_9 chrIII:2130493-2130573 0.00029 14_[+4]_58 chrX:15029864-15029944 0.00029 28_[+4]_44 chrV:19128709-19128789 0.00029 62_[+4]_10 chrII:749688-749768 0.00029 69_[+4]_3 chrV:4801522-4801602 0.00029 7_[+4]_65 chrX:15717086-15717166 0.00029 20_[+4]_52 chrV:20223888-20223968 0.00029 66_[+4]_6 chrIII:7821699-7821779 0.00029 62_[+4]_10 chrII:1522117-1522197 0.00029 52_[+4]_20 chrI:196857-196937 0.00029 37_[+4]_35 chrX:16350182-16350262 0.00029 [+4]_72 chrV:20277082-20277162 0.00031 8_[+4]_64 chrI:8781186-8781266 0.00031 13_[+4]_59 chrI:9563900-9563980 0.00031 33_[+4]_39 chrX:15426894-15426974 0.00036 65_[+4]_7 chrV:20219577-20219657 0.00041 65_[+4]_7 chrV:18612212-18612292 0.00041 33_[+4]_39 chrX:11486508-11486588 0.00044 35_[+4]_37 chrI:12610361-12610441 0.00044 32_[+4]_40 chrI:14243894-14243974 0.00044 64_[+4]_8 chrV:20280513-20280593 0.0005 63_[+4]_9 chrV:19619825-19619905 0.0005 9_[+4]_63 chrV:17690447-17690527 0.0005 1_[+4]_71 chrI:12609967-12610047 0.0005 64_[+4]_8 chrX:2652724-2652804 0.00053 8_[+4]_64 chrX:15964050-15964130 0.00053 20_[+4]_52 chrX:1107040-1107120 0.00053 19_[+4]_53 chrV:19669663-19669743 0.00057 71_[+4]_1 chrIV:9240292-9240372 0.00062 27_[+4]_45 chrX:15124297-15124377 0.00064 66_[+4]_6 chrIV:482228-482308 0.00075 68_[+4]_4 chrX:10942603-10942683 0.0008 36_[+4]_36 chrV:14766150-14766230 0.00089 46_[+4]_26 chrIV:1372073-1372153 0.00096 69_[+4]_3 chrX:12944243-12944323 0.0011 70_[+4]_2 chrI:9558765-9558845 0.0011 13_[+4]_59 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTVAAAA MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTTVAAAA width=8 seqs=89 chrV:19706461-19706541 ( 67) TTTGAAAA 1 chrV:20449215-20449295 ( 61) TTTGAAAA 1 chrIII:1046910-1046990 ( 21) TTTGAAAA 1 chrIII:6066601-6066681 ( 60) TTTGAAAA 1 chrV:19579664-19579744 ( 31) TTTGAAAA 1 chrV:19664213-19664293 ( 19) TTTGAAAA 1 chrIII:1662572-1662652 ( 12) TTTGAAAA 1 chrV:19560087-19560167 ( 35) TTTGAAAA 1 chrIV:108349-108429 ( 7) TTTGAAAA 1 chrII:1362580-1362660 ( 51) TTTGAAAA 1 chrX:15755657-15755737 ( 72) TTTGAAAA 1 chrV:19059213-19059293 ( 4) TTTGAAAA 1 chrX:15332979-15333059 ( 67) TTTGAAAA 1 chrV:18367373-18367453 ( 42) TTTGAAAA 1 chrIV:4107599-4107679 ( 5) TTTGAAAA 1 chrV:17782841-17782921 ( 11) TTTCAAAA 1 chrIV:1630441-1630521 ( 48) TTTCAAAA 1 chrV:18370158-18370238 ( 32) TTTCAAAA 1 chrII:1102109-1102189 ( 20) TTTCAAAA 1 chrX:16172229-16172309 ( 69) TTTCAAAA 1 chrX:15385361-15385441 ( 13) TTTCAAAA 1 chrII:4495185-4495265 ( 9) TTTCAAAA 1 chrV:20031117-20031197 ( 13) TTTCAAAA 1 chrX:16371094-16371174 ( 10) TTTCAAAA 1 chrII:1086962-1087042 ( 58) TTTCAAAA 1 chrV:19693559-19693639 ( 67) TTTCAAAA 1 chrI:197112-197192 ( 57) TTTCAAAA 1 chrX:12967206-12967286 ( 56) TTTCAAAA 1 chrII:1482593-1482673 ( 25) TTTAAAAA 1 chrIII:12297521-12297601 ( 63) TTTAAAAA 1 chrI:9384989-9385069 ( 6) TTTAAAAA 1 chrIV:1148547-1148627 ( 13) TTTAAAAA 1 chrIV:1481222-1481302 ( 54) TTTAAAAA 1 chrIII:2290400-2290480 ( 27) TTTAAAAA 1 chrV:17786023-17786103 ( 65) TTTAAAAA 1 chrV:20024119-20024199 ( 22) TTTAAAAA 1 chrII:6797934-6798014 ( 2) TTTAAAAA 1 chrX:12013762-12013842 ( 67) TTTAAAAA 1 chrIII:7770719-7770799 ( 23) TTTAAAAA 1 chrIII:3198712-3198792 ( 36) TTTTAAAA 1 chrX:17233429-17233509 ( 56) TTTTAAAA 1 chrV:17684636-17684716 ( 21) TTTTAAAA 1 chrX:15426630-15426710 ( 8) TTTTAAAA 1 chrV:20222660-20222740 ( 62) TTTTAAAA 1 chrIV:541486-541566 ( 59) ATTGAAAA 1 chrV:19398558-19398638 ( 18) ATTGAAAA 1 chrX:16308656-16308736 ( 38) ATTGAAAA 1 chrV:19393966-19394046 ( 31) ATTGAAAA 1 chrII:1091435-1091515 ( 18) ATTCAAAA 1 chrIII:2137661-2137741 ( 25) TTCGAAAA 1 chrII:1476165-1476245 ( 73) TTCGAAAA 1 chrX:11283278-11283358 ( 55) TTCGAAAA 1 chrX:3621454-3621534 ( 64) ATTCAAAA 1 chrIII:2130493-2130573 ( 15) ATTAAAAA 1 chrX:15029864-15029944 ( 29) GTTGAAAA 1 chrV:19128709-19128789 ( 63) GTTGAAAA 1 chrII:749688-749768 ( 70) TTCCAAAA 1 chrV:4801522-4801602 ( 8) ATTAAAAA 1 chrX:15717086-15717166 ( 21) TTCCAAAA 1 chrV:20223888-20223968 ( 67) TTCCAAAA 1 chrIII:7821699-7821779 ( 63) TTCCAAAA 1 chrII:1522117-1522197 ( 53) ATTAAAAA 1 chrI:196857-196937 ( 38) ATTAAAAA 1 chrX:16350182-16350262 ( 1) GTTGAAAA 1 chrV:20277082-20277162 ( 9) TCTGAAAA 1 chrI:8781186-8781266 ( 14) TCTGAAAA 1 chrI:9563900-9563980 ( 34) TCTGAAAA 1 chrX:15426894-15426974 ( 66) TTCAAAAA 1 chrV:20219577-20219657 ( 66) TCTCAAAA 1 chrV:18612212-18612292 ( 34) TTTGAAAT 1 chrX:11486508-11486588 ( 36) GTTAAAAA 1 chrI:12610361-12610441 ( 33) GTTAAAAA 1 chrI:14243894-14243974 ( 65) GTTAAAAA 1 chrV:20280513-20280593 ( 64) TTTCAAAT 1 chrV:19619825-19619905 ( 10) TCTAAAAA 1 chrV:17690447-17690527 ( 2) TCTAAAAA 1 chrI:12609967-12610047 ( 65) TTTCAAAT 1 chrX:2652724-2652804 ( 9) ATTTAAAA 1 chrX:15964050-15964130 ( 21) ATTTAAAA 1 chrX:1107040-1107120 ( 20) ATTTAAAA 1 chrV:19669663-19669743 ( 72) TTTAAAAT 1 chrIV:9240292-9240372 ( 28) ATCGAAAA 1 chrX:15124297-15124377 ( 67) TTTGAATA 1 chrIV:482228-482308 ( 69) TTTCAATA 1 chrX:10942603-10942683 ( 37) TTGGAAAA 1 chrV:14766150-14766230 ( 47) TTTGGAAA 1 chrIV:1372073-1372153 ( 70) TTTTAAAT 1 chrX:12944243-12944323 ( 71) TTTGTAAA 1 chrI:9558765-9558845 ( 14) TTTCAGAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTVAAAA MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.04162 E= 7.8e-029 -83 -1312 -172 150 -1312 -174 -1312 177 -1312 -115 -430 170 -18 26 78 -143 180 -1312 -430 -460 182 -1312 -430 -1312 180 -1312 -1312 -360 175 -1312 -1312 -228 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTVAAAA MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 89 E= 7.8e-029 0.157303 0.000000 0.067416 0.775281 0.000000 0.067416 0.000000 0.932584 0.000000 0.101124 0.011236 0.887640 0.247191 0.269663 0.382022 0.101124 0.977528 0.000000 0.011236 0.011236 0.988764 0.000000 0.011236 0.000000 0.977528 0.000000 0.000000 0.022472 0.943820 0.000000 0.000000 0.056180 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTVAAAA MEME-4 regular expression -------------------------------------------------------------------------------- TTT[GCA]AAAA -------------------------------------------------------------------------------- Time 18.54 secs. ******************************************************************************** ******************************************************************************** MOTIF GCTAGCGG MEME-5 width = 8 sites = 49 llr = 437 E-value = 1.2e-028 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCTAGCGG MEME-5 Description -------------------------------------------------------------------------------- Simplified A 1::a:2:: pos.-specific C :7:::6:: probability G 83::a:aa matrix T 2:9::2:: bits 2.2 * ** 2.0 * ** 1.7 ** ** 1.5 *** ** Relative 1.3 **** ** Entropy 1.1 ***** ** (12.9 bits) 0.9 ***** ** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GCTAGCGG consensus G T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTAGCGG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:14972324-14972404 33 9.40e-06 cctccagatt gctagcgg cccaaccact chrIV:541486-541566 19 9.40e-06 cctccagact gctagcgg ccaccactac chrX:14700548-14700628 36 9.40e-06 cctctagatt gctagcgg tcaccactgc chrV:15297667-15297747 29 9.40e-06 cctccagact gctagcgg ccaccactac chrV:506869-506949 16 9.40e-06 cctccagact gctagcgg ccaccactac chrX:15334514-15334594 25 9.40e-06 cctccagatt gctagcgg ccaccactac chrII:2648350-2648430 46 9.40e-06 cctccagatt gctagcgg tcaccactat chrV:2262362-2262442 24 9.40e-06 cctccagatt gctagcgg acaccactac chrX:15615283-15615363 21 9.40e-06 cctccagatt gctagcgg ccaccactac chrX:15755657-15755737 31 9.40e-06 cctccagact gctagcgg ccaccactac chrI:1808736-1808816 27 9.40e-06 tctccagatt gctagcgg ccaccactac chrIV:1372073-1372153 12 9.40e-06 cctccagact gctagcgg ccaccactac chrX:15332979-15333059 22 9.40e-06 tctccagatt gctagcgg ccaccactac chrX:868475-868555 29 9.40e-06 cctccagact gctagcgg ccaccactac chrX:15124297-15124377 25 9.40e-06 cctcctgact gctagcgg ccaccactac chrX:15733694-15733774 22 9.40e-06 cctccagatt gctagcgg ccaccactac chrX:603445-603525 17 9.40e-06 cctccagact gctagcgg ccaccactac chrX:15303631-15303711 18 9.40e-06 cctccagatt gctagcgg ccagcgctac chrIV:3864585-3864665 63 1.87e-05 TGTTCAAGTT GGTAGCGG AAGCTTTTAC chrV:19656183-19656263 38 1.87e-05 GGCTCAACTG GGTAGCGG TTGGGCTGTG chrX:5338931-5339011 26 4.18e-05 gctgaatgaa gctagagg gcaggatttg chrX:9663428-9663508 6 4.18e-05 agatt gctagagg ccatcactac chrX:2652724-2652804 40 5.30e-05 tagctcagtc ggtagtgg tggccgctag chrI:596697-596777 43 5.30e-05 tagctcagtc ggtagtgg tggccgctag chrX:14957905-14957985 43 5.30e-05 tagctcagtc ggtagtgg tggccgctag chrII:13849128-13849208 47 5.30e-05 tagctcagtc ggtagtgg tggccgctag chrX:15997233-15997313 40 5.30e-05 tagctcagtc ggtagtgg tggccgctag chrX:15717086-15717166 52 5.30e-05 tagctcagtc ggtagtgg tggccgctag chrX:15385361-15385441 40 5.30e-05 tagctcagtc ggtagtgg tggccgctag chrV:1425015-1425095 42 5.30e-05 Cagctcagtc ggtagtgg ccgccgctag chrIII:11472181-11472261 54 5.30e-05 TGGCTCAGTC GGTAGTGG TTGGGGTTGG chrX:14761458-14761538 42 5.30e-05 tagctcaatc ggtagtgg taaccgctag chrV:16902387-16902467 23 6.46e-05 cctccagatt tctagcgg ccaccactac chrX:12944243-12944323 22 6.46e-05 cctccagatt tctagcgg tcaccactac chrV:18370158-18370238 63 7.61e-05 GGCTCAGGTG GGTAGAGG TATAACTATG chrV:17684636-17684716 50 7.61e-05 GGCTCAGTAG GGTAGAGG TTTAGTTGCG chrII:755144-755224 15 7.61e-05 GGCTCAGCTG GGTAGAGG CTTGGCTGGC chrI:803780-803860 30 1.13e-04 CCGCTTGTAG TCTAGTGG TTAACACGCT chrX:15120476-15120556 34 1.13e-04 cctccagatt actagcgg ccaccactac chrV:17824504-17824584 38 1.13e-04 cctctagatt actagcgg acaccaccac chrX:15205279-15205359 21 1.13e-04 cctccagatt actagcgg ccaccactac chrX:11936197-11936277 18 1.21e-04 cctccagatt gccagcgg ccaccactac chrX:14328951-14329031 29 1.21e-04 tctccagatt gccagcgg ccaccactac chrV:4801522-4801602 60 1.36e-04 taattagcaa tctagagg tcacgagttc chrX:2416022-2416102 59 1.36e-04 ccggttgcaa tctagagg tcacgagttc chrV:1632476-1632556 63 1.36e-04 ctgcttgcga tctagagg tcgcgagttc chrX:8312509-8312589 65 1.36e-04 ccgcttgcga tctagagg tcacgagt chrII:2274178-2274258 37 1.61e-04 TGTAGGACAC TGTAGTGG AGTCGAGCTG chrX:17078033-17078113 24 2.07e-04 AACGATAAGT GCAAGCGG CAAGCTCGTA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTAGCGG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:14972324-14972404 9.4e-06 32_[+5]_40 chrIV:541486-541566 9.4e-06 18_[+5]_54 chrX:14700548-14700628 9.4e-06 35_[+5]_37 chrV:15297667-15297747 9.4e-06 28_[+5]_44 chrV:506869-506949 9.4e-06 15_[+5]_57 chrX:15334514-15334594 9.4e-06 24_[+5]_48 chrII:2648350-2648430 9.4e-06 45_[+5]_27 chrV:2262362-2262442 9.4e-06 23_[+5]_49 chrX:15615283-15615363 9.4e-06 20_[+5]_52 chrX:15755657-15755737 9.4e-06 30_[+5]_42 chrI:1808736-1808816 9.4e-06 26_[+5]_46 chrIV:1372073-1372153 9.4e-06 11_[+5]_61 chrX:15332979-15333059 9.4e-06 21_[+5]_51 chrX:868475-868555 9.4e-06 28_[+5]_44 chrX:15124297-15124377 9.4e-06 24_[+5]_48 chrX:15733694-15733774 9.4e-06 21_[+5]_51 chrX:603445-603525 9.4e-06 16_[+5]_56 chrX:15303631-15303711 9.4e-06 17_[+5]_55 chrIV:3864585-3864665 1.9e-05 62_[+5]_10 chrV:19656183-19656263 1.9e-05 37_[+5]_35 chrX:5338931-5339011 4.2e-05 25_[+5]_47 chrX:9663428-9663508 4.2e-05 5_[+5]_67 chrX:2652724-2652804 5.3e-05 39_[+5]_33 chrI:596697-596777 5.3e-05 42_[+5]_30 chrX:14957905-14957985 5.3e-05 42_[+5]_30 chrII:13849128-13849208 5.3e-05 46_[+5]_26 chrX:15997233-15997313 5.3e-05 39_[+5]_33 chrX:15717086-15717166 5.3e-05 51_[+5]_21 chrX:15385361-15385441 5.3e-05 39_[+5]_33 chrV:1425015-1425095 5.3e-05 41_[+5]_31 chrIII:11472181-11472261 5.3e-05 53_[+5]_19 chrX:14761458-14761538 5.3e-05 41_[+5]_31 chrV:16902387-16902467 6.5e-05 22_[+5]_50 chrX:12944243-12944323 6.5e-05 21_[+5]_51 chrV:18370158-18370238 7.6e-05 62_[+5]_10 chrV:17684636-17684716 7.6e-05 49_[+5]_23 chrII:755144-755224 7.6e-05 14_[+5]_58 chrI:803780-803860 0.00011 29_[+5]_43 chrX:15120476-15120556 0.00011 33_[+5]_39 chrV:17824504-17824584 0.00011 37_[+5]_35 chrX:15205279-15205359 0.00011 20_[+5]_52 chrX:11936197-11936277 0.00012 17_[+5]_55 chrX:14328951-14329031 0.00012 28_[+5]_44 chrV:4801522-4801602 0.00014 59_[+5]_13 chrX:2416022-2416102 0.00014 58_[+5]_14 chrV:1632476-1632556 0.00014 62_[+5]_10 chrX:8312509-8312589 0.00014 64_[+5]_8 chrII:2274178-2274258 0.00016 36_[+5]_36 chrX:17078033-17078113 0.00021 23_[+5]_49 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTAGCGG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCTAGCGG width=8 seqs=49 chrX:14972324-14972404 ( 33) GCTAGCGG 1 chrIV:541486-541566 ( 19) GCTAGCGG 1 chrX:14700548-14700628 ( 36) GCTAGCGG 1 chrV:15297667-15297747 ( 29) GCTAGCGG 1 chrV:506869-506949 ( 16) GCTAGCGG 1 chrX:15334514-15334594 ( 25) GCTAGCGG 1 chrII:2648350-2648430 ( 46) GCTAGCGG 1 chrV:2262362-2262442 ( 24) GCTAGCGG 1 chrX:15615283-15615363 ( 21) GCTAGCGG 1 chrX:15755657-15755737 ( 31) GCTAGCGG 1 chrI:1808736-1808816 ( 27) GCTAGCGG 1 chrIV:1372073-1372153 ( 12) GCTAGCGG 1 chrX:15332979-15333059 ( 22) GCTAGCGG 1 chrX:868475-868555 ( 29) GCTAGCGG 1 chrX:15124297-15124377 ( 25) GCTAGCGG 1 chrX:15733694-15733774 ( 22) GCTAGCGG 1 chrX:603445-603525 ( 17) GCTAGCGG 1 chrX:15303631-15303711 ( 18) GCTAGCGG 1 chrIV:3864585-3864665 ( 63) GGTAGCGG 1 chrV:19656183-19656263 ( 38) GGTAGCGG 1 chrX:5338931-5339011 ( 26) GCTAGAGG 1 chrX:9663428-9663508 ( 6) GCTAGAGG 1 chrX:2652724-2652804 ( 40) GGTAGTGG 1 chrI:596697-596777 ( 43) GGTAGTGG 1 chrX:14957905-14957985 ( 43) GGTAGTGG 1 chrII:13849128-13849208 ( 47) GGTAGTGG 1 chrX:15997233-15997313 ( 40) GGTAGTGG 1 chrX:15717086-15717166 ( 52) GGTAGTGG 1 chrX:15385361-15385441 ( 40) GGTAGTGG 1 chrV:1425015-1425095 ( 42) GGTAGTGG 1 chrIII:11472181-11472261 ( 54) GGTAGTGG 1 chrX:14761458-14761538 ( 42) GGTAGTGG 1 chrV:16902387-16902467 ( 23) TCTAGCGG 1 chrX:12944243-12944323 ( 22) TCTAGCGG 1 chrV:18370158-18370238 ( 63) GGTAGAGG 1 chrV:17684636-17684716 ( 50) GGTAGAGG 1 chrII:755144-755224 ( 15) GGTAGAGG 1 chrI:803780-803860 ( 30) TCTAGTGG 1 chrX:15120476-15120556 ( 34) ACTAGCGG 1 chrV:17824504-17824584 ( 38) ACTAGCGG 1 chrX:15205279-15205359 ( 21) ACTAGCGG 1 chrX:11936197-11936277 ( 18) GCCAGCGG 1 chrX:14328951-14329031 ( 29) GCCAGCGG 1 chrV:4801522-4801602 ( 60) TCTAGAGG 1 chrX:2416022-2416102 ( 59) TCTAGAGG 1 chrV:1632476-1632556 ( 63) TCTAGAGG 1 chrX:8312509-8312589 ( 65) TCTAGAGG 1 chrII:2274178-2274258 ( 37) TGTAGTGG 1 chrX:17078033-17078113 ( 24) GCAAGCGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTAGCGG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.65557 E= 1.2e-028 -219 -1226 181 -74 -1226 158 56 -1226 -377 -246 -1226 178 184 -1226 -1226 -1226 -1226 -1226 217 -1226 -61 134 -1226 -16 -1226 -1226 217 -1226 -1226 -1226 217 -1226 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTAGCGG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 49 E= 1.2e-028 0.061224 0.000000 0.775510 0.163265 0.000000 0.673469 0.326531 0.000000 0.020408 0.040816 0.000000 0.938776 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.183673 0.571429 0.000000 0.244898 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTAGCGG MEME-5 regular expression -------------------------------------------------------------------------------- G[CG]TAG[CT]GG -------------------------------------------------------------------------------- Time 21.73 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:7770719-7770799 2.20e-01 22_[+4(9.09e-05)]_50 chrI:3366965-3367045 7.72e-01 80 chrX:1982818-1982898 4.63e-01 80 chrX:14951951-14952031 5.74e-01 80 chrX:15080190-15080270 2.06e-03 11_[+3(8.31e-05)]_61 chrX:8312509-8312589 7.63e-04 33_[+2(2.61e-05)]_39 chrX:14486234-14486314 3.11e-03 34_[+1(2.66e-05)]_38 chrIV:4866780-4866860 8.72e-01 80 chrI:9563900-9563980 1.14e-01 80 chrX:16209277-16209357 3.50e-03 19_[+1(2.66e-05)]_53 chrX:12220815-12220895 9.68e-03 29_[+3(1.23e-05)]_43 chrX:12013762-12013842 1.26e-01 66_[+4(9.09e-05)]_6 chrII:1120436-1120516 2.63e-02 25_[+2(4.07e-05)]_47 chrX:15303631-15303711 2.94e-06 17_[+5(9.40e-06)]_13_[+1(2.66e-05)]_\ 34 chrIV:13443722-13443802 8.32e-01 80 chrX:16350182-16350262 4.32e-01 80 chrX:603445-603525 4.68e-06 16_[+5(9.40e-06)]_3_[+3(1.23e-05)]_\ 2_[+1(2.66e-05)]_35 chrX:15733694-15733774 3.84e-06 21_[+5(9.40e-06)]_3_[+3(1.23e-05)]_\ 2_[+1(2.66e-05)]_30 chrX:13990687-13990767 2.62e-01 80 chrV:19355366-19355446 6.86e-01 80 chrI:196857-196937 1.82e-02 70_[+2(2.61e-05)]_2 chrX:10840262-10840342 1.49e-02 80 chrX:12967206-12967286 1.13e-01 55_[+4(5.59e-05)]_17 chrX:15709257-15709337 2.69e-03 14_[+3(1.23e-05)]_2_[+1(5.89e-05)]_\ 48 chrX:15697018-15697098 1.54e-01 80 chrII:6797934-6798014 2.91e-03 1_[+4(9.09e-05)]_62_[+3(1.23e-05)]_\ 1 chrX:16274557-16274637 5.47e-01 80 chrI:197112-197192 2.33e-01 56_[+4(5.59e-05)]_16 chrX:12944243-12944323 2.95e-06 21_[+5(6.46e-05)]_3_[+3(1.23e-05)]_\ 2_[+1(2.66e-05)]_30 chrV:16902387-16902467 1.42e-05 22_[+5(6.46e-05)]_3_[+3(1.23e-05)]_\ 2_[+1(2.66e-05)]_29 chrII:2274178-2274258 6.45e-02 80 chrI:11249367-11249447 9.83e-04 2_[+3(1.23e-05)]_2_[+1(2.66e-05)]_\ 60 chrV:18259205-18259285 4.22e-04 6_[+3(1.23e-05)]_2_[+1(2.66e-05)]_\ 56 chrX:15205279-15205359 3.33e-05 31_[+3(1.23e-05)]_2_[+1(2.66e-05)]_\ 31 chrI:9562384-9562464 4.46e-01 80 chrII:1560321-1560401 6.92e-04 3_[+1(2.66e-05)]_69 chrV:19693559-19693639 1.53e-03 47_[+1(4.12e-05)]_11_[+4(5.59e-05)]_\ 6 chrIV:9240292-9240372 8.36e-02 80 chrX:1713739-1713819 7.48e-02 80 chrX:9663428-9663508 6.25e-05 5_[+5(4.18e-05)]_3_[+3(8.31e-05)]_2_\ [+1(2.66e-05)]_46 chrX:15588419-15588499 6.40e-01 80 chrIV:4107599-4107679 7.47e-05 4_[+4(2.78e-05)]_13_[+2(9.22e-05)]_\ 19_[+2(9.22e-05)]_20 chrI:14322719-14322799 2.25e-03 68_[+3(1.23e-05)]_4 chrV:20024119-20024199 2.18e-04 21_[+4(9.09e-05)]_11_[+2(1.16e-05)]_\ 32 chrX:14761458-14761538 1.96e-04 31_[+2(6.85e-05)]_2_[+5(5.30e-05)]_\ 3_[+3(5.60e-05)]_20 chrI:13063119-13063199 2.20e-01 80 chrX:1107040-1107120 2.45e-01 80 chrIV:10323728-10323808 2.88e-01 80 chrV:428226-428306 1.19e-01 27_[+2(4.07e-05)]_45 chrX:15124297-15124377 1.19e-06 24_[+5(9.40e-06)]_3_[+3(1.23e-05)]_\ 37 chrV:17786023-17786103 1.33e-04 43_[+1(6.85e-05)]_13_[+4(9.09e-05)]_\ 8 chrV:15522385-15522465 2.68e-04 17_[+1(1.20e-05)]_7_[+2(1.16e-05)]_\ 40 chrIII:2460603-2460683 9.23e-02 80 chrII:1086962-1087042 4.77e-03 57_[+4(5.59e-05)]_15 chrX:16213485-16213565 9.75e-01 80 chrV:1632476-1632556 6.19e-03 31_[+2(2.61e-05)]_41 chrX:16371094-16371174 9.39e-02 9_[+4(5.59e-05)]_63 chrX:16212516-16212596 9.18e-02 80 chrX:868475-868555 3.15e-06 28_[+5(9.40e-06)]_3_[+3(1.23e-05)]_\ 2_[+1(2.66e-05)]_23 chrV:18612212-18612292 1.38e-03 52_[+2(1.16e-05)]_20 chrIII:680709-680789 3.17e-01 80 chrIV:16670545-16670625 9.57e-01 80 chrX:15587530-15587610 2.15e-01 80 chrX:1589691-1589771 3.35e-02 34_[+1(2.66e-05)]_38 chrIII:13728247-13728327 7.80e-01 80 chrI:8781186-8781266 2.14e-01 80 chrIII:11472181-11472261 1.95e-03 43_[+2(1.16e-05)]_2_[+5(5.30e-05)]_\ 19 chrV:19693158-19693238 1.63e-03 5_[+1(4.12e-05)]_67 chrV:20031117-20031197 1.41e-02 12_[+4(5.59e-05)]_60 chrIV:13439137-13439217 1.50e-01 80 chrIII:10976659-10976739 3.66e-01 80 chrIV:482228-482308 8.79e-03 32_[+1(4.12e-05)]_40 chrV:19653346-19653426 1.07e-03 36_[+2(4.07e-05)]_36 chrV:17716260-17716340 2.61e-03 60_[+2(4.07e-05)]_12 chrV:18367373-18367453 3.42e-05 41_[+4(2.78e-05)]_11_[+2(1.16e-05)]_\ 12 chrX:15332979-15333059 2.57e-07 21_[+5(9.40e-06)]_3_[+3(1.23e-05)]_\ 26_[+4(2.78e-05)]_6 chrIV:5350370-5350450 1.35e-01 80 chrI:9558765-9558845 1.05e-01 80 chrV:18307376-18307456 5.72e-02 80 chrIII:2290400-2290480 4.44e-03 26_[+4(9.09e-05)]_9_[+2(1.16e-05)]_\ 29 chrV:17824504-17824584 2.71e-04 58_[+1(2.66e-05)]_14 chrX:9647061-9647141 4.35e-01 80 chrV:19477724-19477804 9.87e-01 80 chrIV:1481222-1481302 4.75e-05 33_[+1(4.12e-05)]_[+3(8.31e-05)]_4_\ [+4(9.09e-05)]_19 chrX:5338931-5339011 1.05e-01 25_[+5(4.18e-05)]_47 chrIII:12192913-12192993 7.05e-01 80 chrI:12420217-12420297 4.24e-02 44_[+2(6.85e-05)]_28 chrII:1473163-1473243 1.19e-01 13_[+2(4.07e-05)]_59 chrX:1089423-1089503 6.72e-01 80 chrX:1831691-1831771 4.99e-01 80 chrII:1522117-1522197 3.32e-03 28_[+1(4.12e-05)]_44 chrX:14621426-14621506 6.71e-01 80 chrV:19091084-19091164 1.46e-01 80 chrIV:1372073-1372153 5.38e-07 11_[+5(9.40e-06)]_3_[+3(1.23e-05)]_\ 2_[+1(2.66e-05)]_40 chrX:1620259-1620339 1.84e-01 22_[+2(4.07e-05)]_50 chrV:506606-506686 9.83e-01 80 chrX:2416022-2416102 5.10e-03 27_[+2(2.61e-05)]_45 chrV:19618486-19618566 7.65e-02 44_[+1(2.66e-05)]_28 chrI:12283968-12284048 4.56e-02 45_[+2(2.61e-05)]_27 chrV:14237840-14237920 1.66e-01 80 chrII:982670-982750 5.10e-01 80 chrX:15022679-15022759 4.38e-01 80 chrV:1425015-1425095 1.39e-04 41_[+5(5.30e-05)]_3_[+3(5.60e-05)]_\ 20 chrV:17947416-17947496 2.85e-03 39_[+1(1.20e-05)]_33 chrI:1808736-1808816 5.83e-05 26_[+5(9.40e-06)]_3_[+3(1.23e-05)]_\ 35 chrV:20222660-20222740 6.36e-05 31_[+3(4.63e-05)]_3_[+1(1.20e-05)]_\ 30 chrX:2980259-2980339 2.87e-02 5_[+1(2.66e-05)]_67 chrV:20119924-20120004 2.96e-02 40_[+1(1.20e-05)]_32 chrX:14328951-14329031 5.22e-05 39_[+3(1.23e-05)]_2_[+1(2.66e-05)]_\ 23 chrX:1506361-1506441 9.39e-01 80 chrV:19061188-19061268 4.71e-02 6_[+1(4.12e-05)]_66 chrII:12728760-12728840 6.55e-01 80 chrV:19059213-19059293 1.75e-01 3_[+4(2.78e-05)]_69 chrV:1797995-1798075 4.19e-02 3_[+1(2.66e-05)]_69 chrV:19557641-19557721 1.26e-03 44_[+3(4.63e-05)]_3_[+1(1.20e-05)]_\ 17 chrX:17077833-17077913 9.90e-01 80 chrV:20277082-20277162 8.20e-04 26_[+2(1.16e-05)]_46 chrV:19057482-19057562 1.60e-01 68_[+3(4.63e-05)]_4 chrX:15805065-15805145 4.15e-02 80 chrIV:1148547-1148627 3.80e-04 12_[+4(9.09e-05)]_14_[+2(1.16e-05)]_\ 38 chrIV:14515375-14515455 7.84e-01 80 chrIII:13481185-13481265 1.12e-01 80 chrX:15353061-15353141 1.02e-04 34_[+2(2.61e-05)]_13_[+3(5.60e-05)]_\ 17 chrI:14678342-14678422 2.89e-01 80 chrI:9384989-9385069 2.20e-01 5_[+4(9.09e-05)]_18_[+4(9.09e-05)]_\ 41 chrII:4495185-4495265 4.64e-03 8_[+4(5.59e-05)]_55_[+2(2.61e-05)]_\ 1 chrX:14517265-14517345 7.25e-02 3_[+3(8.31e-05)]_69 chrX:15755657-15755737 2.71e-08 30_[+5(9.40e-06)]_3_[+3(1.23e-05)]_\ 2_[+1(2.66e-05)]_12_[+4(2.78e-05)]_1 chrX:13346035-13346115 2.73e-04 28_[+2(2.61e-05)]_13_[+3(5.60e-05)]_\ 23 chrX:15615283-15615363 2.61e-06 20_[+5(9.40e-06)]_3_[+3(1.23e-05)]_\ 2_[+1(2.66e-05)]_31 chrX:3621454-3621534 3.97e-05 [+3(1.23e-05)]_2_[+1(2.66e-05)]_62 chrV:19393966-19394046 9.05e-04 68_[+2(1.16e-05)]_4 chrX:13935885-13935965 8.22e-01 80 chrV:2262362-2262442 1.07e-06 23_[+5(9.40e-06)]_3_[+3(1.23e-05)]_\ 2_[+1(2.66e-05)]_28 chrI:11509365-11509445 2.25e-02 27_[+2(5.01e-05)]_45 chrX:15426630-15426710 7.67e-03 69_[+2(6.85e-05)]_3 chrIV:2800068-2800148 6.01e-01 80 chrX:13346251-13346331 9.52e-01 80 chrIII:7821699-7821779 1.93e-01 80 chrI:12609967-12610047 5.75e-01 80 chrIV:1490523-1490603 5.84e-02 68_[+1(8.02e-05)]_4 chrII:2648350-2648430 1.79e-04 45_[+5(9.40e-06)]_13_[+1(2.66e-05)]_\ 6 chrX:15865113-15865193 4.94e-01 80 chrV:20223888-20223968 4.97e-06 31_[+3(4.63e-05)]_3_[+1(1.20e-05)]_\ 30 chrII:1362580-1362660 5.32e-03 30_[+1(6.85e-05)]_12_[+4(2.78e-05)]_\ 22 chrX:11283278-11283358 4.04e-05 3_[+3(1.23e-05)]_2_[+1(2.66e-05)]_\ 59 chrV:19656183-19656263 7.63e-04 26_[+2(4.07e-05)]_3_[+5(1.87e-05)]_\ 35 chrIV:1637469-1637549 2.64e-02 45_[+2(4.07e-05)]_27 chrX:15120476-15120556 3.20e-05 44_[+3(1.23e-05)]_2_[+1(2.66e-05)]_\ 18 chrX:16308656-16308736 4.62e-02 80 chrI:13730025-13730105 2.87e-01 80 chrX:15334514-15334594 4.79e-06 24_[+5(9.40e-06)]_3_[+3(1.23e-05)]_\ 2_[+1(2.66e-05)]_27 chrI:803780-803860 2.97e-02 80 chrV:17694113-17694193 3.61e-05 27_[+3(4.63e-05)]_3_[+1(1.20e-05)]_\ 34 chrX:15385361-15385441 1.53e-06 12_[+4(5.59e-05)]_9_[+2(2.61e-05)]_\ 2_[+5(5.30e-05)]_3_[+3(5.60e-05)]_22 chrX:5836263-5836343 2.56e-01 80 chrX:17078033-17078113 1.97e-02 80 chrV:20219577-20219657 8.11e-04 46_[+1(1.20e-05)]_26 chrII:1098943-1099023 9.73e-04 4_[+1(4.12e-05)]_25_[+2(4.07e-05)]_\ 35 chrIV:108349-108429 4.75e-04 6_[+4(2.78e-05)]_10_[+2(5.01e-05)]_\ 48 chrV:506869-506949 4.29e-06 15_[+5(9.40e-06)]_3_[+3(1.23e-05)]_\ 2_[+1(2.66e-05)]_36 chrII:755144-755224 6.04e-04 3_[+2(1.16e-05)]_3_[+5(7.61e-05)]_\ 58 chrII:4495449-4495529 6.78e-01 80 chrV:15297667-15297747 2.10e-06 28_[+5(9.40e-06)]_3_[+3(1.23e-05)]_\ 2_[+1(2.66e-05)]_23 chrV:10772047-10772127 6.44e-02 23_[+2(1.16e-05)]_49 chrX:15717086-15717166 5.89e-06 41_[+2(2.61e-05)]_2_[+5(5.30e-05)]_\ 3_[+3(5.60e-05)]_10 chrIII:1983011-1983091 1.42e-03 13_[+2(8.04e-05)]_8_[+2(5.01e-05)]_\ 43 chrV:19560087-19560167 9.15e-04 34_[+4(2.78e-05)]_9_[+2(9.22e-05)]_\ 21 chrX:16172229-16172309 1.30e-01 68_[+4(5.59e-05)]_4 chrV:20279473-20279553 9.27e-04 32_[+2(1.16e-05)]_40 chrX:15997233-15997313 2.96e-05 29_[+2(2.61e-05)]_2_[+5(5.30e-05)]_\ 3_[+3(5.60e-05)]_22 chrII:13849128-13849208 1.29e-04 36_[+2(2.61e-05)]_2_[+5(5.30e-05)]_\ 3_[+3(5.60e-05)]_15 chrV:17684636-17684716 7.43e-05 38_[+2(1.16e-05)]_3_[+5(7.61e-05)]_\ 23 chrIV:3864585-3864665 1.33e-02 62_[+5(1.87e-05)]_10 chrV:17691520-17691600 3.00e-02 62_[+2(1.16e-05)]_10 chrX:15997485-15997565 3.38e-01 80 chrIII:6066398-6066478 3.71e-01 80 chrI:14243894-14243974 5.94e-03 32_[+1(1.20e-05)]_40 chrII:1102109-1102189 9.78e-03 1_[+1(4.12e-05)]_10_[+4(5.59e-05)]_\ 53 chrX:14700548-14700628 1.56e-05 35_[+5(9.40e-06)]_13_[+1(2.66e-05)]_\ 16 chrV:4801522-4801602 7.29e-04 28_[+2(2.61e-05)]_44 chrX:14957905-14957985 1.28e-04 32_[+2(2.61e-05)]_2_[+5(5.30e-05)]_\ 3_[+3(5.60e-05)]_19 chrI:11499204-11499284 9.20e-02 47_[+1(1.20e-05)]_25 chrV:18370158-18370238 8.87e-05 31_[+4(5.59e-05)]_12_[+2(1.16e-05)]_\ 3_[+5(7.61e-05)]_10 chrII:749688-749768 4.75e-03 49_[+1(4.12e-05)]_23 chrI:12610361-12610441 9.74e-03 67_[+2(1.16e-05)]_5 chrX:15426894-15426974 5.60e-01 80 chrIII:12297521-12297601 3.09e-03 6_[+1(2.66e-05)]_48_[+4(9.09e-05)]_\ 10 chrIV:1630441-1630521 3.75e-03 28_[+1(1.20e-05)]_11_[+4(5.59e-05)]_\ 25 chrII:3262486-3262566 9.81e-02 13_[+2(4.07e-05)]_2_[+2(4.07e-05)]_\ 49 chrV:19398558-19398638 8.80e-05 34_[+2(1.16e-05)]_38 chrV:19623160-19623240 2.40e-02 47_[+2(5.01e-05)]_25 chrIII:1662572-1662652 1.61e-03 11_[+4(2.78e-05)]_61 chrX:16212781-16212861 9.58e-02 80 chrII:13849336-13849416 5.18e-01 80 chrV:19664213-19664293 9.12e-02 18_[+4(2.78e-05)]_54 chrIV:17318987-17319067 3.98e-01 80 chrX:15385564-15385644 1.54e-01 80 chrV:19669663-19669743 1.63e-04 38_[+3(4.63e-05)]_3_[+1(1.20e-05)]_\ 23 chrV:20023227-20023307 1.42e-02 51_[+1(1.20e-05)]_21 chrV:17690447-17690527 1.19e-03 67_[+2(4.07e-05)]_5 chrX:15964050-15964130 3.26e-01 80 chrV:19128709-19128789 4.27e-03 41_[+1(2.66e-05)]_31 chrII:1101192-1101272 1.12e-02 14_[+1(4.12e-05)]_58 chrII:11769199-11769279 1.77e-01 80 chrV:19579664-19579744 1.17e-04 30_[+4(2.78e-05)]_10_[+2(1.16e-05)]_\ 24 chrX:10942603-10942683 4.32e-01 80 chrV:19062886-19062966 9.10e-03 35_[+2(4.07e-05)]_37 chrIII:2652870-2652950 3.82e-01 80 chrX:15029864-15029944 9.27e-03 80 chrV:14766150-14766230 8.43e-01 80 chrV:17782841-17782921 1.50e-03 10_[+4(5.59e-05)]_11_[+2(5.01e-05)]_\ 43 chrII:2822177-2822257 1.00e+00 80 chrIII:6066601-6066681 8.34e-03 59_[+4(2.78e-05)]_13 chrII:1476165-1476245 3.37e-03 52_[+1(1.20e-05)]_20 chrV:863086-863166 1.63e-01 80 chrI:2687275-2687355 6.24e-01 80 chrI:596697-596777 2.96e-05 32_[+2(2.61e-05)]_2_[+5(5.30e-05)]_\ 3_[+3(5.60e-05)]_19 chrII:1482593-1482673 9.10e-03 4_[+1(4.12e-05)]_12_[+4(9.09e-05)]_\ 48 chrX:13697665-13697745 3.32e-01 80 chrIII:1046910-1046990 2.56e-02 20_[+4(2.78e-05)]_52 chrI:997228-997308 6.60e-02 80 chrX:2652724-2652804 9.69e-06 29_[+2(2.61e-05)]_2_[+5(5.30e-05)]_\ 3_[+3(5.60e-05)]_22 chrIII:2137661-2137741 8.21e-03 41_[+2(9.22e-05)]_31 chrIV:11838023-11838103 6.54e-03 80 chrV:17935733-17935813 3.84e-03 28_[+2(1.16e-05)]_44 chrI:13693587-13693667 3.77e-02 64_[+1(1.20e-05)]_8 chrIV:541486-541566 1.17e-07 18_[+5(9.40e-06)]_3_[+3(1.23e-05)]_\ 2_[+1(2.66e-05)]_33 chrX:12312951-12313031 9.47e-02 72_[+2(2.61e-05)] chrIV:541258-541338 5.56e-01 80 chrX:17233429-17233509 1.74e-01 80 chrI:10076203-10076283 2.97e-02 32_[+1(1.20e-05)]_40 chrI:13895225-13895305 5.72e-02 57_[+1(6.85e-05)]_15 chrI:12486581-12486661 2.04e-01 42_[+1(6.85e-05)]_30 chrV:19619825-19619905 1.92e-03 34_[+2(1.16e-05)]_38 chrIII:2130493-2130573 2.61e-02 31_[+2(9.22e-05)]_41 chrII:1091435-1091515 4.01e-02 80 chrX:2416227-2416307 8.10e-01 80 chrV:16712968-16713048 1.31e-01 57_[+2(2.61e-05)]_15 chrX:11486508-11486588 3.25e-02 80 chrV:20449215-20449295 2.13e-03 60_[+4(2.78e-05)]_12 chrII:1474973-1475053 4.84e-02 21_[+2(4.07e-05)]_51 chrIII:3198712-3198792 6.72e-03 52_[+2(5.01e-05)]_20 chrX:1994277-1994357 4.34e-01 80 chrX:11936197-11936277 1.24e-05 28_[+3(1.23e-05)]_2_[+1(2.66e-05)]_\ 34 chrX:15335927-15336007 3.36e-01 80 chrI:11133822-11133902 2.29e-02 71_[+2(2.61e-05)]_1 chrV:20280513-20280593 9.24e-04 44_[+1(1.20e-05)]_28 chrV:19706461-19706541 3.18e-05 40_[+1(1.20e-05)]_18_[+4(2.78e-05)]_\ 6 chrX:14972324-14972404 2.60e-06 32_[+5(9.40e-06)]_5_[+3(1.23e-05)]_\ 2_[+1(2.66e-05)]_17 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n06.farnam.hpc.yale.internal ********************************************************************************