******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/worm/fasta/RankLinear2.0_40/rnt-1.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrII:2436868-2436948 1.0000 80 chrV:20605988-20606068 1.0000 80 chrI:10491111-10491191 1.0000 80 chrX:15470137-15470217 1.0000 80 chrII:2341191-2341271 1.0000 80 chrII:8749259-8749339 1.0000 80 chrV:16249239-16249319 1.0000 80 chrV:2809675-2809755 1.0000 80 chrI:3891633-3891713 1.0000 80 chrIV:14507126-14507206 1.0000 80 chrX:14288019-14288099 1.0000 80 chrV:11093593-11093673 1.0000 80 chrII:13738267-13738347 1.0000 80 chrX:10410786-10410866 1.0000 80 chrIV:13719086-13719166 1.0000 80 chrI:3793507-3793587 1.0000 80 chrIII:3200707-3200787 1.0000 80 chrX:8054697-8054777 1.0000 80 chrV:6204267-6204347 1.0000 80 chrIV:9615646-9615726 1.0000 80 chrI:3405722-3405802 1.0000 80 chrX:3854082-3854162 1.0000 80 chrI:7028299-7028379 1.0000 80 chrV:11307937-11308017 1.0000 80 chrII:9645140-9645220 1.0000 80 chrI:3988773-3988853 1.0000 80 chrIII:3304776-3304856 1.0000 80 chrX:16534679-16534759 1.0000 80 chrIII:9083214-9083294 1.0000 80 chrII:4184133-4184213 1.0000 80 chrV:9295729-9295809 1.0000 80 chrX:2713111-2713191 1.0000 80 chrX:1109017-1109097 1.0000 80 chrX:1961488-1961568 1.0000 80 chrX:11560215-11560295 1.0000 80 chrV:7822798-7822878 1.0000 80 chrX:11035696-11035776 1.0000 80 chrV:19429793-19429873 1.0000 80 chrIII:7780701-7780781 1.0000 80 chrI:5690301-5690381 1.0000 80 chrIV:1911366-1911446 1.0000 80 chrI:4881295-4881375 1.0000 80 chrIII:9642243-9642323 1.0000 80 chrII:7722911-7722991 1.0000 80 chrX:6239153-6239233 1.0000 80 chrX:1082098-1082178 1.0000 80 chrX:5195571-5195651 1.0000 80 chrI:14863593-14863673 1.0000 80 chrI:11963200-11963280 1.0000 80 chrI:4046775-4046855 1.0000 80 chrI:32737-32817 1.0000 80 chrV:18020763-18020843 1.0000 80 chrIV:9008083-9008163 1.0000 80 chrX:16392304-16392384 1.0000 80 chrX:8053138-8053218 1.0000 80 chrX:3455632-3455712 1.0000 80 chrX:6894315-6894395 1.0000 80 chrII:4805917-4805997 1.0000 80 chrI:5020154-5020234 1.0000 80 chrI:7508266-7508346 1.0000 80 chrX:3989191-3989271 1.0000 80 chrIV:7095594-7095674 1.0000 80 chrX:8789156-8789236 1.0000 80 chrII:11602762-11602842 1.0000 80 chrIII:12800753-12800833 1.0000 80 chrIII:8815801-8815881 1.0000 80 chrX:3889721-3889801 1.0000 80 chrIV:13126148-13126228 1.0000 80 chrV:10720629-10720709 1.0000 80 chrX:7523878-7523958 1.0000 80 chrV:14806364-14806444 1.0000 80 chrV:12518915-12518995 1.0000 80 chrX:8723978-8724058 1.0000 80 chrI:5599508-5599588 1.0000 80 chrX:6591867-6591947 1.0000 80 chrX:9228535-9228615 1.0000 80 chrX:7485874-7485954 1.0000 80 chrX:11057244-11057324 1.0000 80 chrV:5296111-5296191 1.0000 80 chrIV:1108207-1108287 1.0000 80 chrIV:4686970-4687050 1.0000 80 chrII:5841319-5841399 1.0000 80 chrIII:3600062-3600142 1.0000 80 chrV:13346051-13346131 1.0000 80 chrI:6236008-6236088 1.0000 80 chrV:9958740-9958820 1.0000 80 chrX:7573684-7573764 1.0000 80 chrX:12248323-12248403 1.0000 80 chrX:4068308-4068388 1.0000 80 chrIII:3914983-3915063 1.0000 80 chrX:3706473-3706553 1.0000 80 chrX:7640003-7640083 1.0000 80 chrI:10590634-10590714 1.0000 80 chrX:16655430-16655510 1.0000 80 chrV:8802396-8802476 1.0000 80 chrIV:7098721-7098801 1.0000 80 chrV:6202787-6202867 1.0000 80 chrIV:7426201-7426281 1.0000 80 chrI:433677-433757 1.0000 80 chrI:9546339-9546419 1.0000 80 chrIII:8839944-8840024 1.0000 80 chrV:12233551-12233631 1.0000 80 chrX:3412073-3412153 1.0000 80 chrII:7801998-7802078 1.0000 80 chrI:9962942-9963022 1.0000 80 chrX:3488281-3488361 1.0000 80 chrIII:6463587-6463667 1.0000 80 chrIV:1107307-1107387 1.0000 80 chrI:4475197-4475277 1.0000 80 chrIII:9641137-9641217 1.0000 80 chrV:11074628-11074708 1.0000 80 chrX:5506746-5506826 1.0000 80 chrII:4520414-4520494 1.0000 80 chrIV:12637461-12637541 1.0000 80 chrX:4522280-4522360 1.0000 80 chrIV:12012573-12012653 1.0000 80 chrIV:8533524-8533604 1.0000 80 chrI:2967782-2967862 1.0000 80 chrI:4941322-4941402 1.0000 80 chrX:17456893-17456973 1.0000 80 chrI:1792650-1792730 1.0000 80 chrI:6843431-6843511 1.0000 80 chrIV:11068467-11068547 1.0000 80 chrI:10262272-10262352 1.0000 80 chrX:15014080-15014160 1.0000 80 chrII:8783691-8783771 1.0000 80 chrI:608866-608946 1.0000 80 chrIII:7620282-7620362 1.0000 80 chrX:11379489-11379569 1.0000 80 chrI:14862307-14862387 1.0000 80 chrV:4157489-4157569 1.0000 80 chrI:6238417-6238497 1.0000 80 chrX:3190383-3190463 1.0000 80 chrX:3733480-3733560 1.0000 80 chrX:2796306-2796386 1.0000 80 chrV:4777758-4777838 1.0000 80 chrX:1311225-1311305 1.0000 80 chrIV:13695896-13695976 1.0000 80 chrX:2520687-2520767 1.0000 80 chrV:6768738-6768818 1.0000 80 chrX:3689489-3689569 1.0000 80 chrIII:10248926-10249006 1.0000 80 chrX:9300577-9300657 1.0000 80 chrIII:6655976-6656056 1.0000 80 chrII:10025234-10025314 1.0000 80 chrV:6352505-6352585 1.0000 80 chrV:13414774-13414854 1.0000 80 chrV:11309034-11309114 1.0000 80 chrX:16796131-16796211 1.0000 80 chrIV:13704139-13704219 1.0000 80 chrIV:12366738-12366818 1.0000 80 chrIII:5563835-5563915 1.0000 80 chrV:13393550-13393630 1.0000 80 chrI:11294214-11294294 1.0000 80 chrX:16389462-16389542 1.0000 80 chrX:5061971-5062051 1.0000 80 chrV:14847466-14847546 1.0000 80 chrIV:10261293-10261373 1.0000 80 chrIV:12010545-12010625 1.0000 80 chrX:5592640-5592720 1.0000 80 chrV:11034894-11034974 1.0000 80 chrIII:7880484-7880564 1.0000 80 chrII:8499164-8499244 1.0000 80 chrI:13495210-13495290 1.0000 80 chrX:4957371-4957451 1.0000 80 chrX:14039741-14039821 1.0000 80 chrII:4518424-4518504 1.0000 80 chrX:14653672-14653752 1.0000 80 chrIII:7217301-7217381 1.0000 80 chrIV:9613277-9613357 1.0000 80 chrI:8985990-8986070 1.0000 80 chrX:17458991-17459071 1.0000 80 chrIV:5820196-5820276 1.0000 80 chrV:14625682-14625762 1.0000 80 chrI:10280701-10280781 1.0000 80 chrX:14292744-14292824 1.0000 80 chrX:12672076-12672156 1.0000 80 chrIII:11093614-11093694 1.0000 80 chrII:6028738-6028818 1.0000 80 chrX:5818393-5818473 1.0000 80 chrX:11474346-11474426 1.0000 80 chrI:13686807-13686887 1.0000 80 chrIII:3927676-3927756 1.0000 80 chrX:6399612-6399692 1.0000 80 chrX:12511573-12511653 1.0000 80 chrV:5995757-5995837 1.0000 80 chrX:2885479-2885559 1.0000 80 chrV:4491434-4491514 1.0000 80 chrII:301169-301249 1.0000 80 chrX:6057731-6057811 1.0000 80 chrV:20771813-20771893 1.0000 80 chrI:14628090-14628170 1.0000 80 chrV:6030726-6030806 1.0000 80 chrIII:6132260-6132340 1.0000 80 chrIII:7215698-7215778 1.0000 80 chrV:18712201-18712281 1.0000 80 chrV:14800513-14800593 1.0000 80 chrIV:7659694-7659774 1.0000 80 chrV:16553048-16553128 1.0000 80 chrV:12234763-12234843 1.0000 80 chrIII:7560003-7560083 1.0000 80 chrIV:3014786-3014866 1.0000 80 chrII:11076674-11076754 1.0000 80 chrII:161493-161573 1.0000 80 chrX:11463647-11463727 1.0000 80 chrI:527549-527629 1.0000 80 chrV:14153755-14153835 1.0000 80 chrX:13873485-13873565 1.0000 80 chrI:14898730-14898810 1.0000 80 chrIV:5535970-5536050 1.0000 80 chrII:6545179-6545259 1.0000 80 chrIV:14032926-14033006 1.0000 80 chrIII:9240130-9240210 1.0000 80 chrIII:461685-461765 1.0000 80 chrI:3987838-3987918 1.0000 80 chrI:7321641-7321721 1.0000 80 chrIII:11942809-11942889 1.0000 80 chrI:7712834-7712914 1.0000 80 chrI:5997553-5997633 1.0000 80 chrIII:13635965-13636045 1.0000 80 chrIII:1238888-1238968 1.0000 80 chrX:2452478-2452558 1.0000 80 chrX:9931599-9931679 1.0000 80 chrIV:13699573-13699653 1.0000 80 chrV:6930447-6930527 1.0000 80 chrI:5589568-5589648 1.0000 80 chrX:13409722-13409802 1.0000 80 chrI:7383289-7383369 1.0000 80 chrI:14533014-14533094 1.0000 80 chrIII:5835324-5835404 1.0000 80 chrV:20793969-20794049 1.0000 80 chrX:3900946-3901026 1.0000 80 chrI:14806603-14806683 1.0000 80 chrIV:7723749-7723829 1.0000 80 chrX:7170231-7170311 1.0000 80 chrII:6303341-6303421 1.0000 80 chrII:6683814-6683894 1.0000 80 chrV:4502775-4502855 1.0000 80 chrII:4394672-4394752 1.0000 80 chrIII:4358454-4358534 1.0000 80 chrII:6825930-6826010 1.0000 80 chrI:3842608-3842688 1.0000 80 chrIV:17108368-17108448 1.0000 80 chrIII:6402497-6402577 1.0000 80 chrII:10204790-10204870 1.0000 80 chrII:1502038-1502118 1.0000 80 chrV:11082574-11082654 1.0000 80 chrX:7528127-7528207 1.0000 80 chrII:9307006-9307086 1.0000 80 chrX:3631790-3631870 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/worm/inference_raw/MEME/RankLinear2.0_40_rnt-1/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/worm/fasta/RankLinear2.0_40/rnt-1.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.268 C 0.229 G 0.243 T 0.26 Background letter frequencies (from file dataset with add-one prior applied): A 0.268 C 0.229 G 0.243 T 0.26 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF TCTCTCTC MEME-1 width = 8 sites = 65 llr = 517 E-value = 7.5e-024 ******************************************************************************** -------------------------------------------------------------------------------- Motif TCTCTCTC MEME-1 Description -------------------------------------------------------------------------------- Simplified A :::1:::: pos.-specific C :819:717 probability G :::::2:2 matrix T a29:a192 bits 2.1 1.9 * * 1.7 * ** 1.5 * *** * Relative 1.3 ***** * Entropy 1.1 ***** * (11.5 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TCTCTCTC consensus T G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTCTCTC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrII:6825930-6826010 46 1.26e-05 GCCctctccc tctctctc acttttctct chrI:14533014-14533094 49 1.26e-05 TGCCACCTTC TCTCTCTC CTCCCGTGTG chrI:5997553-5997633 3 1.26e-05 CT TCTCTCTC GGGCGGTACA chrIV:14032926-14033006 34 1.26e-05 ACACACActc tctctctc tctttctcGC chrV:12234763-12234843 64 1.26e-05 CTCTCTGCAC TCTCTCTC TAATATTCT chrX:6057731-6057811 35 1.26e-05 tcgttctctc tctctctc tctgtcGAGT chrV:14625682-14625762 11 1.26e-05 CAACATTTTC TCTCTCTC TCGGCTGAAG chrV:11034894-11034974 16 1.26e-05 TTGATCTCTA TCTCTCTC CAGATCCTCC chrX:1311225-1311305 1 1.26e-05 . TCTCTCTC TGTCCGGCGA chrI:4475197-4475277 38 1.26e-05 tctctccatc tctctctc tctctctcAC chrX:3706473-3706553 31 1.26e-05 TTGGTTTCTC TCTCTCTC ACCCTACTAC chrIV:1911366-1911446 49 1.26e-05 CAACCCCCTC TCTCTCTC TTCCCGATCG chrIII:7780701-7780781 33 1.26e-05 GCTCAGGTCA TCTCTCTC TGCACACGAA chrII:6303341-6303421 65 2.59e-05 CTTATCTGAG TCTCTGTC TTCATAGA chrV:6930447-6930527 46 2.59e-05 TCGAGTTCTG TCTCTGTC TATCTGATAC chrIII:7215698-7215778 45 2.59e-05 AACTGACTCT TCTCTGTC TGTGATCTCT chrV:20771813-20771893 19 2.59e-05 GATTCCCTTT TCTCTGTC TCGTCAACTT chrIV:1107307-1107387 17 2.59e-05 GTGTCAATTT TCTCTGTC TTTCTTTTCC chrII:11602762-11602842 55 2.59e-05 AGGGCTGAGT TCTCTGTC AAAGAGCACT chrI:11963200-11963280 43 2.59e-05 GAGGATGAGC TCTCTGTC CAATGCATTT chrX:2452478-2452558 24 4.02e-05 GCAGTTGCCC TTTCTCTC AGGTGACGCA chrV:14847466-14847546 38 4.02e-05 GCATTTTTGC TTTCTCTC GGGGTTTTCG chrX:9228535-9228615 33 4.02e-05 ttctatttta tttctctc tttctcattc chrII:4184133-4184213 28 4.02e-05 TTTCCCTCTC TTTCTCTC GTCCATCCTC chrII:10204790-10204870 49 6.78e-05 CAACACATAC TCTCTCTG CGATCCCGTG chrI:1792650-1792730 43 6.78e-05 CATTCGCATG TCTCTCTG CGGCTCTCAT chrI:4941322-4941402 11 6.78e-05 CCCCCTGGGT TCTCTCTG TGTGCATCGT chrX:8053138-8053218 26 6.78e-05 CCCTCCCGCT TCTCTCTT CCTACCGTGC chrI:4046775-4046855 12 6.78e-05 tttctttcta tctctctt tatctCGGCA chrV:7822798-7822878 8 6.78e-05 ATTGCGA TCTCTCTT GTTGCTCCTC chrI:527549-527629 62 8.20e-05 CACTTTTTCT TCTCTTTC TGGCTACTGC chrX:14292744-14292824 24 8.20e-05 CATGtcttct tctctttc tactactacc chrI:608866-608946 50 8.20e-05 CCCGGGAAGC TCTCTTTC TCATGTGGGA chrI:3842608-3842688 16 9.31e-05 ATTCACGTCT TCCCTCTC CGCTGCCGAC chrII:7801998-7802078 54 9.31e-05 TTAAGGTCAT TCCCTCTC AGAATCCTCA chrX:7170231-7170311 51 1.08e-04 TGTGTGTGTG TCTATCTC TCCTCTGTTT chrX:5592640-5592720 25 1.08e-04 CACTTATATC TCTATCTC TTGGTTCGTT chrV:6768738-6768818 51 1.19e-04 AGAAGTGAGC TCTCTCCC GTGGATGAAT chrIII:9642243-9642323 57 1.19e-04 TTCATCTCAT TCTCTCCC CTTTTAGCTT chrIII:461685-461765 27 1.34e-04 TTATCAATTA TTTCTGTC GGCTCAGAGC chrII:301169-301249 18 1.34e-04 TAGGAACAAT TTTCTGTC TCTTCCATAT chrX:13873485-13873565 70 1.63e-04 TTCATCTACT TCTCTGTT TCT chrIV:13719086-13719166 70 1.63e-04 TACCTGACGT TCTCTGTG ACT chrX:10410786-10410866 29 1.63e-04 AATTTCTATG TCTCTGTG TGTGTTTTTG chrI:6238417-6238497 30 1.95e-04 CTTGAAGCAA TTTCTCTG CGACGAATCA chrIV:8533524-8533604 36 1.95e-04 AACCTCTCTA TTTCTCTT CGCAACCCAT chrIV:13126148-13126228 21 1.95e-04 TAGATTTCAA TTTCTCTT ATTCCCCCCC chrI:3988773-3988853 7 1.95e-04 GTAACG TTTCTCTG GTTTCTATAC chrIV:9615646-9615726 48 1.95e-04 TTGATCTAAT TTTCTCTT ATCTCGGTTG chrIII:3200707-3200787 10 1.95e-04 TCCCCATCA TTTCTCTG CGGTCTCTCA chrI:5589568-5589648 59 2.38e-04 CAGCTGTCTC TCTATGTC TGCGCCTCAC chrI:13686807-13686887 42 2.38e-04 AGTTTATATA TCTATGTC TATGTACCCC chrIII:4358454-4358534 66 2.81e-04 CACTTGTTGC TCTCTGCC ACTTTTA chrI:32737-32817 9 2.81e-04 GAGACGAA TCTCTTTG CATCTTTGTG chrIII:9083214-9083294 4 2.81e-04 CCA TCTCTTTT TCAATCGAAT chrV:4491434-4491514 21 2.94e-04 TCCGTGTCAA TTCCTCTC CTGCGGCTTC chrIV:12637461-12637541 23 2.94e-04 TTCATGATTC TTCCTCTC TGATGTCTCC chrX:12511573-12511653 26 3.35e-04 AGGGAGATAG TTTATCTC AGAAGGTAAT chrI:9962942-9963022 16 3.35e-04 CCCCCTATTT TCCCTCTT CTTTTTCTTT chrX:3989191-3989271 41 3.35e-04 TCCTCCCCCC TCCCTCTG CACTTGGGCC chrX:6399612-6399692 20 3.80e-04 GATGAGCCAC TCTATCTT CTCGTCCAAA chrX:15470137-15470217 54 3.80e-04 tctatctaga tctatctt tatctatcta chrIII:7217301-7217381 55 4.80e-04 CTGTTTCTAT TCTCTCAC TGTCTGTGTC chrX:6239153-6239233 1 4.92e-04 . TCTCTTCC CGACAACAGA chrIII:3304776-3304856 29 4.92e-04 CATTCTGACG TCTCTTCC CCCCCCCCCC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTCTCTC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:6825930-6826010 1.3e-05 45_[+1]_27 chrI:14533014-14533094 1.3e-05 48_[+1]_24 chrI:5997553-5997633 1.3e-05 2_[+1]_70 chrIV:14032926-14033006 1.3e-05 33_[+1]_39 chrV:12234763-12234843 1.3e-05 63_[+1]_9 chrX:6057731-6057811 1.3e-05 34_[+1]_38 chrV:14625682-14625762 1.3e-05 10_[+1]_62 chrV:11034894-11034974 1.3e-05 15_[+1]_57 chrX:1311225-1311305 1.3e-05 [+1]_72 chrI:4475197-4475277 1.3e-05 37_[+1]_35 chrX:3706473-3706553 1.3e-05 30_[+1]_42 chrIV:1911366-1911446 1.3e-05 48_[+1]_24 chrIII:7780701-7780781 1.3e-05 32_[+1]_40 chrII:6303341-6303421 2.6e-05 64_[+1]_8 chrV:6930447-6930527 2.6e-05 45_[+1]_27 chrIII:7215698-7215778 2.6e-05 44_[+1]_28 chrV:20771813-20771893 2.6e-05 18_[+1]_54 chrIV:1107307-1107387 2.6e-05 16_[+1]_56 chrII:11602762-11602842 2.6e-05 54_[+1]_18 chrI:11963200-11963280 2.6e-05 42_[+1]_30 chrX:2452478-2452558 4e-05 23_[+1]_49 chrV:14847466-14847546 4e-05 37_[+1]_35 chrX:9228535-9228615 4e-05 32_[+1]_40 chrII:4184133-4184213 4e-05 27_[+1]_45 chrII:10204790-10204870 6.8e-05 48_[+1]_24 chrI:1792650-1792730 6.8e-05 42_[+1]_30 chrI:4941322-4941402 6.8e-05 10_[+1]_62 chrX:8053138-8053218 6.8e-05 25_[+1]_47 chrI:4046775-4046855 6.8e-05 11_[+1]_61 chrV:7822798-7822878 6.8e-05 7_[+1]_65 chrI:527549-527629 8.2e-05 61_[+1]_11 chrX:14292744-14292824 8.2e-05 23_[+1]_49 chrI:608866-608946 8.2e-05 49_[+1]_23 chrI:3842608-3842688 9.3e-05 15_[+1]_57 chrII:7801998-7802078 9.3e-05 53_[+1]_19 chrX:7170231-7170311 0.00011 50_[+1]_22 chrX:5592640-5592720 0.00011 24_[+1]_48 chrV:6768738-6768818 0.00012 50_[+1]_22 chrIII:9642243-9642323 0.00012 56_[+1]_16 chrIII:461685-461765 0.00013 26_[+1]_46 chrII:301169-301249 0.00013 17_[+1]_55 chrX:13873485-13873565 0.00016 69_[+1]_3 chrIV:13719086-13719166 0.00016 69_[+1]_3 chrX:10410786-10410866 0.00016 28_[+1]_44 chrI:6238417-6238497 0.00019 29_[+1]_43 chrIV:8533524-8533604 0.00019 35_[+1]_37 chrIV:13126148-13126228 0.00019 20_[+1]_52 chrI:3988773-3988853 0.00019 6_[+1]_66 chrIV:9615646-9615726 0.00019 47_[+1]_25 chrIII:3200707-3200787 0.00019 9_[+1]_63 chrI:5589568-5589648 0.00024 58_[+1]_14 chrI:13686807-13686887 0.00024 41_[+1]_31 chrIII:4358454-4358534 0.00028 65_[+1]_7 chrI:32737-32817 0.00028 8_[+1]_64 chrIII:9083214-9083294 0.00028 3_[+1]_69 chrV:4491434-4491514 0.00029 20_[+1]_52 chrIV:12637461-12637541 0.00029 22_[+1]_50 chrX:12511573-12511653 0.00033 25_[+1]_47 chrI:9962942-9963022 0.00033 15_[+1]_57 chrX:3989191-3989271 0.00033 40_[+1]_32 chrX:6399612-6399692 0.00038 19_[+1]_53 chrX:15470137-15470217 0.00038 53_[+1]_19 chrIII:7217301-7217381 0.00048 54_[+1]_18 chrX:6239153-6239233 0.00049 [+1]_72 chrIII:3304776-3304856 0.00049 28_[+1]_44 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTCTCTC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TCTCTCTC width=8 seqs=65 chrII:6825930-6826010 ( 46) TCTCTCTC 1 chrI:14533014-14533094 ( 49) TCTCTCTC 1 chrI:5997553-5997633 ( 3) TCTCTCTC 1 chrIV:14032926-14033006 ( 34) TCTCTCTC 1 chrV:12234763-12234843 ( 64) TCTCTCTC 1 chrX:6057731-6057811 ( 35) TCTCTCTC 1 chrV:14625682-14625762 ( 11) TCTCTCTC 1 chrV:11034894-11034974 ( 16) TCTCTCTC 1 chrX:1311225-1311305 ( 1) TCTCTCTC 1 chrI:4475197-4475277 ( 38) TCTCTCTC 1 chrX:3706473-3706553 ( 31) TCTCTCTC 1 chrIV:1911366-1911446 ( 49) TCTCTCTC 1 chrIII:7780701-7780781 ( 33) TCTCTCTC 1 chrII:6303341-6303421 ( 65) TCTCTGTC 1 chrV:6930447-6930527 ( 46) TCTCTGTC 1 chrIII:7215698-7215778 ( 45) TCTCTGTC 1 chrV:20771813-20771893 ( 19) TCTCTGTC 1 chrIV:1107307-1107387 ( 17) TCTCTGTC 1 chrII:11602762-11602842 ( 55) TCTCTGTC 1 chrI:11963200-11963280 ( 43) TCTCTGTC 1 chrX:2452478-2452558 ( 24) TTTCTCTC 1 chrV:14847466-14847546 ( 38) TTTCTCTC 1 chrX:9228535-9228615 ( 33) TTTCTCTC 1 chrII:4184133-4184213 ( 28) TTTCTCTC 1 chrII:10204790-10204870 ( 49) TCTCTCTG 1 chrI:1792650-1792730 ( 43) TCTCTCTG 1 chrI:4941322-4941402 ( 11) TCTCTCTG 1 chrX:8053138-8053218 ( 26) TCTCTCTT 1 chrI:4046775-4046855 ( 12) TCTCTCTT 1 chrV:7822798-7822878 ( 8) TCTCTCTT 1 chrI:527549-527629 ( 62) TCTCTTTC 1 chrX:14292744-14292824 ( 24) TCTCTTTC 1 chrI:608866-608946 ( 50) TCTCTTTC 1 chrI:3842608-3842688 ( 16) TCCCTCTC 1 chrII:7801998-7802078 ( 54) TCCCTCTC 1 chrX:7170231-7170311 ( 51) TCTATCTC 1 chrX:5592640-5592720 ( 25) TCTATCTC 1 chrV:6768738-6768818 ( 51) TCTCTCCC 1 chrIII:9642243-9642323 ( 57) TCTCTCCC 1 chrIII:461685-461765 ( 27) TTTCTGTC 1 chrII:301169-301249 ( 18) TTTCTGTC 1 chrX:13873485-13873565 ( 70) TCTCTGTT 1 chrIV:13719086-13719166 ( 70) TCTCTGTG 1 chrX:10410786-10410866 ( 29) TCTCTGTG 1 chrI:6238417-6238497 ( 30) TTTCTCTG 1 chrIV:8533524-8533604 ( 36) TTTCTCTT 1 chrIV:13126148-13126228 ( 21) TTTCTCTT 1 chrI:3988773-3988853 ( 7) TTTCTCTG 1 chrIV:9615646-9615726 ( 48) TTTCTCTT 1 chrIII:3200707-3200787 ( 10) TTTCTCTG 1 chrI:5589568-5589648 ( 59) TCTATGTC 1 chrI:13686807-13686887 ( 42) TCTATGTC 1 chrIII:4358454-4358534 ( 66) TCTCTGCC 1 chrI:32737-32817 ( 9) TCTCTTTG 1 chrIII:9083214-9083294 ( 4) TCTCTTTT 1 chrV:4491434-4491514 ( 21) TTCCTCTC 1 chrIV:12637461-12637541 ( 23) TTCCTCTC 1 chrX:12511573-12511653 ( 26) TTTATCTC 1 chrI:9962942-9963022 ( 16) TCCCTCTT 1 chrX:3989191-3989271 ( 41) TCCCTCTG 1 chrX:6399612-6399692 ( 20) TCTATCTT 1 chrX:15470137-15470217 ( 54) TCTATCTT 1 chrIII:7217301-7217381 ( 55) TCTCTCAC 1 chrX:6239153-6239233 ( 1) TCTCTTCC 1 chrIII:3304776-3304856 ( 29) TCTCTTCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTCTCTC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.1364 E= 7.5e-024 -1267 -1267 -1267 195 -1267 175 -1267 -17 -1267 -131 -1267 181 -132 196 -1267 -1267 -1267 -1267 -1267 195 -1267 153 -7 -127 -412 -158 -1267 181 -1267 156 -66 -62 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTCTCTC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 65 E= 7.5e-024 0.000000 0.000000 0.000000 1.000000 0.000000 0.769231 0.000000 0.230769 0.000000 0.092308 0.000000 0.907692 0.107692 0.892308 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.661538 0.230769 0.107692 0.015385 0.076923 0.000000 0.907692 0.000000 0.676923 0.153846 0.169231 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTCTCTC MEME-1 regular expression -------------------------------------------------------------------------------- T[CT]TCT[CG]TC -------------------------------------------------------------------------------- Time 5.01 secs. ******************************************************************************** ******************************************************************************** MOTIF RRAGAGAD MEME-2 width = 8 sites = 88 llr = 611 E-value = 5.3e-012 ******************************************************************************** -------------------------------------------------------------------------------- Motif RRAGAGAD MEME-2 Description -------------------------------------------------------------------------------- Simplified A 4562a:a4 pos.-specific C :::::::1 probability G 6518:a:4 matrix T ::3::::2 bits 2.1 * 1.9 *** 1.7 *** 1.5 *** Relative 1.3 **** Entropy 1.1 ** **** (10.0 bits) 0.8 ** **** 0.6 ******* 0.4 ******* 0.2 ******** 0.0 -------- Multilevel GAAGAGAA consensus AGT G sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RRAGAGAD MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIII:4358454-4358534 35 7.21e-05 ATGTGAAAAC GAAGAGAG AGAATGGAGC chrII:4394672-4394752 4 7.21e-05 GAA GAAGAGAA AGGAGAAAAG chrI:5589568-5589648 38 7.21e-05 CCCTTGAGAG GGAGAGAG AGACAGCTGT chrX:9931599-9931679 46 7.21e-05 TTGGGTCTAG GAAGAGAA TAGAGGAGAG chrIII:9240130-9240210 56 7.21e-05 AGCGTGTCAG GGAGAGAG TATGAGGAAA chrI:11294214-11294294 58 7.21e-05 ATGGGGCCCT GGAGAGAG TTCCAGGACA chrIII:5563835-5563915 26 7.21e-05 AGCATTGGCa gaagagag aacagaagaa chrIV:13704139-13704219 32 7.21e-05 GGCGATGAGT GGAGAGAA ACCAACGTAT chrV:13414774-13414854 58 7.21e-05 GGCATGAGGT GAAGAGAA AGAGAGAAAC chrIII:10248926-10249006 35 7.21e-05 GTGTAACATG GGAGAGAG CACGGGAGCC chrI:14862307-14862387 24 7.21e-05 CAGAGATTCA GAAGAGAG GCAGAGATAG chrI:608866-608946 8 7.21e-05 AAACGAG GGAGAGAA AAAGAGAAAA chrIV:11068467-11068547 43 7.21e-05 TTTCAATGTT GAAGAGAG ATACGTGTGT chrI:2967782-2967862 67 7.21e-05 CATACAGTGC GGAGAGAA AGTGTC chrIII:9641137-9641217 54 7.21e-05 GCAACAAGAG GAAGAGAG ATAGAGTGTG chrV:6202787-6202867 8 7.21e-05 GAGACAA GAAGAGAG CGTTGTCTAA chrX:16655430-16655510 38 7.21e-05 CGAGAGCGAG GGAGAGAA AGAGATGGAG chrV:12518915-12518995 32 7.21e-05 CTGAGAGCAA GAAGAGAG CAGTTTGGAA chrIII:8815801-8815881 72 7.21e-05 GAGCCCTCGG GAAGAGAG C chrI:7508266-7508346 5 7.21e-05 GCCT GGAGAGAA TAAATTGGTC chrX:6894315-6894395 37 7.21e-05 CAGAAAATAA GAAGAGAA AGAGTGAAAA chrX:8053138-8053218 69 7.21e-05 AGAGGATAAA GGAGAGAA AGAA chrV:6204267-6204347 5 7.21e-05 CAAC GAAGAGAG ATCACTGGTG chrX:14288019-14288099 71 7.21e-05 CACTCATTTC GAAGAGAG AG chrIII:5835324-5835404 35 1.52e-04 agagagagat agagagag agggaaagag chrI:7321641-7321721 32 1.52e-04 TTTGCAATGG AAAGAGAA TGCAATGCGG chrIII:6655976-6656056 69 1.52e-04 TGCTCCGAAT AGAGAGAA AAAG chrIII:8839944-8840024 15 1.52e-04 AAGGTGAGCG AGAGAGAA AAGAACAGAT chrV:8802396-8802476 1 1.52e-04 . AGAGAGAA AGGAAGATGG chrI:5599508-5599588 59 1.52e-04 TGTGAAAGTG AGAGAGAG ACACAGTGAA chrII:7722911-7722991 42 1.52e-04 CATTGATTTG AAAGAGAG ATTCAGACGT chrX:3854082-3854162 73 1.52e-04 TGCGAAAACA AAAGAGAA chrI:10491111-10491191 61 1.52e-04 aggttgagag agagagag acagagagat chrI:8985990-8986070 17 1.88e-04 GAGATGAGGA GAAGAGAT TATCGATAGG chrV:4502775-4502855 65 2.58e-04 ATCCGATGGA GGTGAGAA ATAGATTG chrII:6683814-6683894 19 2.58e-04 CGCAGGGTGT GGTGAGAA AATTGTCCGC chrX:14653672-14653752 60 2.58e-04 CAAGATAAAG GATGAGAA ACACCGTCAG chrII:8783691-8783771 45 2.58e-04 GATAGACAGA GATGAGAA AGTGCTGCAA chrX:5506746-5506826 63 2.58e-04 CCTTCGGGAA GATGAGAA TAATCGAATG chrV:12233551-12233631 73 2.58e-04 ATGACCGAGA GATGAGAG chrX:7485874-7485954 64 2.58e-04 ATTCTTCTTT GGTGAGAG ATTTAGACA chrI:10280701-10280781 33 2.99e-04 ACAGATGTAC AGAGAGAT GACTCGAACA chrV:11074628-11074708 64 2.99e-04 AAACGTTAGA AAAGAGAT GGCAAAGAA chrIV:9008083-9008163 13 2.99e-04 AAAAGTGATC AGAGAGAT AGATATAGAG chrV:2809675-2809755 32 2.99e-04 GAAAGGGATG AGAGAGAT GCGAAGAGTC chrV:14800513-14800593 13 3.76e-04 TTATATACAA AGTGAGAG GAGCTCCAGT chrIII:7880484-7880564 21 3.76e-04 TGGCGCAACG AGTGAGAA TCAGCAATGA chrIV:12012573-12012653 50 3.76e-04 AACGGCATCG AGTGAGAG AGTGTTGAAG chrIII:6463587-6463667 64 3.76e-04 TTTAAAATGC AATGAGAA AGCTCATAA chrX:11560215-11560295 25 3.76e-04 CACTAGAATG AGTGAGAA GCCACTGGCA chrII:6303341-6303421 14 4.12e-04 AAACTTTGTC GATGAGAT TGGACGGGAG chrX:6399612-6399692 71 4.12e-04 TAAAAAGCAA GATGAGAT AA chrII:6028738-6028818 56 4.12e-04 GGTGGTGAAT GATGAGAT GTGTGTGTGT chrIV:13695896-13695976 35 4.12e-04 GATAACTCAA GATGAGAT GACACACGGG chrIV:7095594-7095674 13 4.12e-04 CAAATCAGAT GATGAGAT AGTCTTCAAA chrII:9307006-9307086 11 5.57e-04 GAGAAGCAAT GAAAAGAG CATCAGTCAA chrIV:7723749-7723829 4 5.57e-04 CAT GAAAAGAA GAGGGAGGAG chrX:3689489-3689569 63 5.57e-04 CACCCGGGAG GGGGAGAA ACATCGAGAC chrV:4157489-4157569 58 5.57e-04 TCTTGTTAGG GAGGAGAA GCGACAAGTG chrX:8723978-8724058 60 5.57e-04 TAGAAGAAGT GAAAAGAG CACAAATTAC chrX:8789156-8789236 29 5.57e-04 GAGACGTGTT GGAAAGAG CATCTGTCTG chrX:5195571-5195651 70 5.57e-04 AGTCGAAGAC GGAAAGAA GAG chrX:1082098-1082178 20 5.57e-04 CGCTGTGGCA GAGGAGAG CCTATCCCCG chrX:3900946-3901026 6 5.89e-04 ATAAA GAAGAGAC AAGCACTGGA chrI:14863593-14863673 45 5.89e-04 GGCAGCGGCG GGAGAGAC GGGAACCCGG chrIII:11093614-11093694 3 6.28e-04 AA AATGAGAT CTCACAGGTC chrX:1109017-1109097 66 6.28e-04 CCAGTTGGGG AATGAGAT AGACAGT chrV:11093593-11093673 67 6.28e-04 CAAGACGGAG AATGAGAT GGAGAT chrI:14533014-14533094 9 7.88e-04 GGACATCG AGAAAGAG TTGGCCATTG chrX:13873485-13873565 30 7.88e-04 Aagaaggaca agggagaa gctaacggga chrV:14153755-14153835 68 7.88e-04 CTCATTCTGA AGGGAGAA GAAGA chrII:11076674-11076754 16 7.88e-04 TTACTCACGC AGGGAGAA AGCGGCGCCC chrV:6030726-6030806 2 7.88e-04 G AAGGAGAA GATGAAGGGA chrIV:7426201-7426281 72 7.88e-04 agtgatagag aaaaagaa t chrIII:3304776-3304856 9 7.88e-04 GAAGCACA AAAAAGAG TACATTCTGA chrX:8054697-8054777 21 7.88e-04 TACGCTTTGG AAAAAGAA ATTTCCCTGC chrI:3891633-3891713 45 7.88e-04 GATCAAGAGG AAAAAGAA AAAGAAAGAT chrII:8499164-8499244 2 8.24e-04 A AGAGAGAC GCAGCCTACT chrIV:7098721-7098801 54 8.24e-04 AGAGGGGAGC AGAGAGAC ATAGTGTGTA chrX:10410786-10410866 56 8.24e-04 GTTGTGAGAC AGAGAGAC AAAAAGGTGG chrI:13495210-13495290 9 8.97e-04 aagaCACG GGGGAGAT TAAATTGCGG chrX:17458991-17459071 7 9.74e-04 ATGGCG GGTAAGAG GCATCGCGAC chrX:9300577-9300657 31 9.74e-04 AATTGGGACG GATAAGAG CGGAAGCGTT chrI:6843431-6843511 69 9.74e-04 TGATGAGACG GATAAGAG GGCA chrIII:6132260-6132340 6 1.09e-03 TAAAG AAAAAGAT ACAAATCTTT chrX:12511573-12511653 16 1.09e-03 AAAGTACTAA AGGGAGAT AGTTTATCTC chrIII:3927676-3927756 18 1.09e-03 AGGAGCAAGG AGGGAGAT GATGATCGGA chrX:16534679-16534759 7 1.09e-03 TGCGAG AAAAAGAT ATGGGAATTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RRAGAGAD MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:4358454-4358534 7.2e-05 34_[+2]_38 chrII:4394672-4394752 7.2e-05 3_[+2]_69 chrI:5589568-5589648 7.2e-05 37_[+2]_35 chrX:9931599-9931679 7.2e-05 45_[+2]_27 chrIII:9240130-9240210 7.2e-05 55_[+2]_17 chrI:11294214-11294294 7.2e-05 57_[+2]_15 chrIII:5563835-5563915 7.2e-05 25_[+2]_47 chrIV:13704139-13704219 7.2e-05 31_[+2]_41 chrV:13414774-13414854 7.2e-05 57_[+2]_15 chrIII:10248926-10249006 7.2e-05 34_[+2]_38 chrI:14862307-14862387 7.2e-05 23_[+2]_49 chrI:608866-608946 7.2e-05 7_[+2]_65 chrIV:11068467-11068547 7.2e-05 42_[+2]_30 chrI:2967782-2967862 7.2e-05 66_[+2]_6 chrIII:9641137-9641217 7.2e-05 53_[+2]_19 chrV:6202787-6202867 7.2e-05 7_[+2]_65 chrX:16655430-16655510 7.2e-05 37_[+2]_35 chrV:12518915-12518995 7.2e-05 31_[+2]_41 chrIII:8815801-8815881 7.2e-05 71_[+2]_1 chrI:7508266-7508346 7.2e-05 4_[+2]_68 chrX:6894315-6894395 7.2e-05 36_[+2]_36 chrX:8053138-8053218 7.2e-05 68_[+2]_4 chrV:6204267-6204347 7.2e-05 4_[+2]_68 chrX:14288019-14288099 7.2e-05 70_[+2]_2 chrIII:5835324-5835404 0.00015 34_[+2]_38 chrI:7321641-7321721 0.00015 31_[+2]_41 chrIII:6655976-6656056 0.00015 68_[+2]_4 chrIII:8839944-8840024 0.00015 14_[+2]_58 chrV:8802396-8802476 0.00015 [+2]_72 chrI:5599508-5599588 0.00015 58_[+2]_14 chrII:7722911-7722991 0.00015 41_[+2]_31 chrX:3854082-3854162 0.00015 72_[+2] chrI:10491111-10491191 0.00015 60_[+2]_12 chrI:8985990-8986070 0.00019 16_[+2]_56 chrV:4502775-4502855 0.00026 64_[+2]_8 chrII:6683814-6683894 0.00026 18_[+2]_54 chrX:14653672-14653752 0.00026 59_[+2]_13 chrII:8783691-8783771 0.00026 44_[+2]_28 chrX:5506746-5506826 0.00026 62_[+2]_10 chrV:12233551-12233631 0.00026 72_[+2] chrX:7485874-7485954 0.00026 63_[+2]_9 chrI:10280701-10280781 0.0003 32_[+2]_40 chrV:11074628-11074708 0.0003 63_[+2]_9 chrIV:9008083-9008163 0.0003 12_[+2]_60 chrV:2809675-2809755 0.0003 31_[+2]_41 chrV:14800513-14800593 0.00038 12_[+2]_60 chrIII:7880484-7880564 0.00038 20_[+2]_52 chrIV:12012573-12012653 0.00038 49_[+2]_23 chrIII:6463587-6463667 0.00038 63_[+2]_9 chrX:11560215-11560295 0.00038 24_[+2]_48 chrII:6303341-6303421 0.00041 13_[+2]_59 chrX:6399612-6399692 0.00041 70_[+2]_2 chrII:6028738-6028818 0.00041 55_[+2]_17 chrIV:13695896-13695976 0.00041 34_[+2]_38 chrIV:7095594-7095674 0.00041 12_[+2]_60 chrII:9307006-9307086 0.00056 10_[+2]_62 chrIV:7723749-7723829 0.00056 3_[+2]_69 chrX:3689489-3689569 0.00056 62_[+2]_10 chrV:4157489-4157569 0.00056 57_[+2]_15 chrX:8723978-8724058 0.00056 59_[+2]_13 chrX:8789156-8789236 0.00056 28_[+2]_44 chrX:5195571-5195651 0.00056 69_[+2]_3 chrX:1082098-1082178 0.00056 19_[+2]_53 chrX:3900946-3901026 0.00059 5_[+2]_67 chrI:14863593-14863673 0.00059 44_[+2]_28 chrIII:11093614-11093694 0.00063 2_[+2]_70 chrX:1109017-1109097 0.00063 65_[+2]_7 chrV:11093593-11093673 0.00063 66_[+2]_6 chrI:14533014-14533094 0.00079 8_[+2]_64 chrX:13873485-13873565 0.00079 29_[+2]_43 chrV:14153755-14153835 0.00079 67_[+2]_5 chrII:11076674-11076754 0.00079 15_[+2]_57 chrV:6030726-6030806 0.00079 1_[+2]_71 chrIV:7426201-7426281 0.00079 71_[+2]_1 chrIII:3304776-3304856 0.00079 8_[+2]_64 chrX:8054697-8054777 0.00079 20_[+2]_52 chrI:3891633-3891713 0.00079 44_[+2]_28 chrII:8499164-8499244 0.00082 1_[+2]_71 chrIV:7098721-7098801 0.00082 53_[+2]_19 chrX:10410786-10410866 0.00082 55_[+2]_17 chrI:13495210-13495290 0.0009 8_[+2]_64 chrX:17458991-17459071 0.00097 6_[+2]_66 chrX:9300577-9300657 0.00097 30_[+2]_42 chrI:6843431-6843511 0.00097 68_[+2]_4 chrIII:6132260-6132340 0.0011 5_[+2]_67 chrX:12511573-12511653 0.0011 15_[+2]_57 chrIII:3927676-3927756 0.0011 17_[+2]_55 chrX:16534679-16534759 0.0011 6_[+2]_66 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RRAGAGAD MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RRAGAGAD width=8 seqs=88 chrIII:4358454-4358534 ( 35) GAAGAGAG 1 chrII:4394672-4394752 ( 4) GAAGAGAA 1 chrI:5589568-5589648 ( 38) GGAGAGAG 1 chrX:9931599-9931679 ( 46) GAAGAGAA 1 chrIII:9240130-9240210 ( 56) GGAGAGAG 1 chrI:11294214-11294294 ( 58) GGAGAGAG 1 chrIII:5563835-5563915 ( 26) GAAGAGAG 1 chrIV:13704139-13704219 ( 32) GGAGAGAA 1 chrV:13414774-13414854 ( 58) GAAGAGAA 1 chrIII:10248926-10249006 ( 35) GGAGAGAG 1 chrI:14862307-14862387 ( 24) GAAGAGAG 1 chrI:608866-608946 ( 8) GGAGAGAA 1 chrIV:11068467-11068547 ( 43) GAAGAGAG 1 chrI:2967782-2967862 ( 67) GGAGAGAA 1 chrIII:9641137-9641217 ( 54) GAAGAGAG 1 chrV:6202787-6202867 ( 8) GAAGAGAG 1 chrX:16655430-16655510 ( 38) GGAGAGAA 1 chrV:12518915-12518995 ( 32) GAAGAGAG 1 chrIII:8815801-8815881 ( 72) GAAGAGAG 1 chrI:7508266-7508346 ( 5) GGAGAGAA 1 chrX:6894315-6894395 ( 37) GAAGAGAA 1 chrX:8053138-8053218 ( 69) GGAGAGAA 1 chrV:6204267-6204347 ( 5) GAAGAGAG 1 chrX:14288019-14288099 ( 71) GAAGAGAG 1 chrIII:5835324-5835404 ( 35) AGAGAGAG 1 chrI:7321641-7321721 ( 32) AAAGAGAA 1 chrIII:6655976-6656056 ( 69) AGAGAGAA 1 chrIII:8839944-8840024 ( 15) AGAGAGAA 1 chrV:8802396-8802476 ( 1) AGAGAGAA 1 chrI:5599508-5599588 ( 59) AGAGAGAG 1 chrII:7722911-7722991 ( 42) AAAGAGAG 1 chrX:3854082-3854162 ( 73) AAAGAGAA 1 chrI:10491111-10491191 ( 61) AGAGAGAG 1 chrI:8985990-8986070 ( 17) GAAGAGAT 1 chrV:4502775-4502855 ( 65) GGTGAGAA 1 chrII:6683814-6683894 ( 19) GGTGAGAA 1 chrX:14653672-14653752 ( 60) GATGAGAA 1 chrII:8783691-8783771 ( 45) GATGAGAA 1 chrX:5506746-5506826 ( 63) GATGAGAA 1 chrV:12233551-12233631 ( 73) GATGAGAG 1 chrX:7485874-7485954 ( 64) GGTGAGAG 1 chrI:10280701-10280781 ( 33) AGAGAGAT 1 chrV:11074628-11074708 ( 64) AAAGAGAT 1 chrIV:9008083-9008163 ( 13) AGAGAGAT 1 chrV:2809675-2809755 ( 32) AGAGAGAT 1 chrV:14800513-14800593 ( 13) AGTGAGAG 1 chrIII:7880484-7880564 ( 21) AGTGAGAA 1 chrIV:12012573-12012653 ( 50) AGTGAGAG 1 chrIII:6463587-6463667 ( 64) AATGAGAA 1 chrX:11560215-11560295 ( 25) AGTGAGAA 1 chrII:6303341-6303421 ( 14) GATGAGAT 1 chrX:6399612-6399692 ( 71) GATGAGAT 1 chrII:6028738-6028818 ( 56) GATGAGAT 1 chrIV:13695896-13695976 ( 35) GATGAGAT 1 chrIV:7095594-7095674 ( 13) GATGAGAT 1 chrII:9307006-9307086 ( 11) GAAAAGAG 1 chrIV:7723749-7723829 ( 4) GAAAAGAA 1 chrX:3689489-3689569 ( 63) GGGGAGAA 1 chrV:4157489-4157569 ( 58) GAGGAGAA 1 chrX:8723978-8724058 ( 60) GAAAAGAG 1 chrX:8789156-8789236 ( 29) GGAAAGAG 1 chrX:5195571-5195651 ( 70) GGAAAGAA 1 chrX:1082098-1082178 ( 20) GAGGAGAG 1 chrX:3900946-3901026 ( 6) GAAGAGAC 1 chrI:14863593-14863673 ( 45) GGAGAGAC 1 chrIII:11093614-11093694 ( 3) AATGAGAT 1 chrX:1109017-1109097 ( 66) AATGAGAT 1 chrV:11093593-11093673 ( 67) AATGAGAT 1 chrI:14533014-14533094 ( 9) AGAAAGAG 1 chrX:13873485-13873565 ( 30) AGGGAGAA 1 chrV:14153755-14153835 ( 68) AGGGAGAA 1 chrII:11076674-11076754 ( 16) AGGGAGAA 1 chrV:6030726-6030806 ( 2) AAGGAGAA 1 chrIV:7426201-7426281 ( 72) AAAAAGAA 1 chrIII:3304776-3304856 ( 9) AAAAAGAG 1 chrX:8054697-8054777 ( 21) AAAAAGAA 1 chrI:3891633-3891713 ( 45) AAAAAGAA 1 chrII:8499164-8499244 ( 2) AGAGAGAC 1 chrIV:7098721-7098801 ( 54) AGAGAGAC 1 chrX:10410786-10410866 ( 56) AGAGAGAC 1 chrI:13495210-13495290 ( 9) GGGGAGAT 1 chrX:17458991-17459071 ( 7) GGTAAGAG 1 chrX:9300577-9300657 ( 31) GATAAGAG 1 chrI:6843431-6843511 ( 69) GATAAGAG 1 chrIII:6132260-6132340 ( 6) AAAAAGAT 1 chrX:12511573-12511653 ( 16) AGGGAGAT 1 chrIII:3927676-3927756 ( 18) AGGGAGAT 1 chrX:16534679-16534759 ( 7) AAAAAGAT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RRAGAGAD MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.2272 E= 5.3e-012 65 -1310 126 -1310 99 -1310 94 -1310 122 -1310 -109 1 -65 -1310 177 -1310 190 -1310 -1310 -1310 -1310 -1310 204 -1310 190 -1310 -1310 -1310 53 -201 54 -34 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RRAGAGAD MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 88 E= 5.3e-012 0.420455 0.000000 0.579545 0.000000 0.534091 0.000000 0.465909 0.000000 0.625000 0.000000 0.113636 0.261364 0.170455 0.000000 0.829545 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.386364 0.056818 0.352273 0.204545 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RRAGAGAD MEME-2 regular expression -------------------------------------------------------------------------------- [GA][AG][AT]GAGA[AGT] -------------------------------------------------------------------------------- Time 8.66 secs. ******************************************************************************** ******************************************************************************** MOTIF STCCTCCC MEME-3 width = 8 sites = 11 llr = 108 E-value = 9.9e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif STCCTCCC MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C 42aa3aaa probability G 6::::::: matrix T :8::7::: bits 2.1 ** *** 1.9 ** *** 1.7 ** *** 1.5 ** *** Relative 1.3 *** *** Entropy 1.1 ******** (14.2 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GTCCTCCC consensus C C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif STCCTCCC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrI:3842608-3842688 59 1.03e-05 GTGCTCTCTC GTCCTCCC CAGGTGAAAC chrX:3989191-3989271 30 1.03e-05 TCTGGAGGGT GTCCTCCC CCCTCCCTCT chrX:15014080-15014160 29 2.01e-05 ATTGTTGTGC CTCCTCCC ACCAATTGGC chrX:4068308-4068388 19 2.01e-05 AACCGGAGCA CTCCTCCC CGTATATTAA chrIII:3200707-3200787 46 2.01e-05 CTATCTTTGG CTCCTCCC ATTTTTCTTG chrI:10491111-10491191 5 2.01e-05 CCTT CTCCTCCC TTCCTGCGGT chrX:5506746-5506826 29 2.92e-05 GAGTTGATCT GTCCCCCC GGCGGGAAGA chrIV:1911366-1911446 4 2.92e-05 CTT GTCCCCCC TACTAAAAGA chrII:2436868-2436948 11 2.92e-05 AATATACAGC GTCCCCCC ACAAAGTCTA chrI:9546339-9546419 38 4.69e-05 GGCGCCTGTC GCCCTCCC CTCTTGCTTG chrX:8053138-8053218 11 4.69e-05 AAAAATCGGC GCCCTCCC TCCCGCTTCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif STCCTCCC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:3842608-3842688 1e-05 58_[+3]_14 chrX:3989191-3989271 1e-05 29_[+3]_43 chrX:15014080-15014160 2e-05 28_[+3]_44 chrX:4068308-4068388 2e-05 18_[+3]_54 chrIII:3200707-3200787 2e-05 45_[+3]_27 chrI:10491111-10491191 2e-05 4_[+3]_68 chrX:5506746-5506826 2.9e-05 28_[+3]_44 chrIV:1911366-1911446 2.9e-05 3_[+3]_69 chrII:2436868-2436948 2.9e-05 10_[+3]_62 chrI:9546339-9546419 4.7e-05 37_[+3]_35 chrX:8053138-8053218 4.7e-05 10_[+3]_62 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif STCCTCCC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF STCCTCCC width=8 seqs=11 chrI:3842608-3842688 ( 59) GTCCTCCC 1 chrX:3989191-3989271 ( 30) GTCCTCCC 1 chrX:15014080-15014160 ( 29) CTCCTCCC 1 chrX:4068308-4068388 ( 19) CTCCTCCC 1 chrIII:3200707-3200787 ( 46) CTCCTCCC 1 chrI:10491111-10491191 ( 5) CTCCTCCC 1 chrX:5506746-5506826 ( 29) GTCCCCCC 1 chrIV:1911366-1911446 ( 4) GTCCCCCC 1 chrII:2436868-2436948 ( 11) GTCCCCCC 1 chrI:9546339-9546419 ( 38) GCCCTCCC 1 chrX:8053138-8053218 ( 11) GCCCTCCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif STCCTCCC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.7222 E= 9.9e+003 -1010 66 139 -1010 -1010 -33 -1010 166 -1010 212 -1010 -1010 -1010 212 -1010 -1010 -1010 25 -1010 149 -1010 212 -1010 -1010 -1010 212 -1010 -1010 -1010 212 -1010 -1010 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif STCCTCCC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 11 E= 9.9e+003 0.000000 0.363636 0.636364 0.000000 0.000000 0.181818 0.000000 0.818182 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.272727 0.000000 0.727273 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif STCCTCCC MEME-3 regular expression -------------------------------------------------------------------------------- [GC]TCC[TC]CCC -------------------------------------------------------------------------------- Time 12.26 secs. ******************************************************************************** ******************************************************************************** MOTIF CAGYTGYC MEME-4 width = 8 sites = 25 llr = 215 E-value = 3.8e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif CAGYTGYC MEME-4 Description -------------------------------------------------------------------------------- Simplified A :8:::::: pos.-specific C a2:4::38 probability G ::a::a1: matrix T :::6a:62 bits 2.1 * * * 1.9 * * ** 1.7 * * ** 1.5 * * ** Relative 1.3 *** ** * Entropy 1.1 *** ** * (12.4 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CAGTTGTC consensus C CT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGYTGYC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:3631790-3631870 39 1.46e-05 tgttgtcacc cagttgtc actcagttgt chrX:12672076-12672156 51 1.46e-05 AAACACTTGT CAGTTGTC GCTTTTTATC chrX:14653672-14653752 37 1.46e-05 gaagGTACGG CAGTTGTC CTCTCCAAGA chrIV:12010545-12010625 18 1.46e-05 CCCCATCTGC CAGTTGTC TTTCGGGGCA chrX:14288019-14288099 2 1.46e-05 A CAGTTGTC TTTGTGGGAA chrI:5589568-5589648 49 2.74e-05 GAGAGAGAGA CAGCTGTC TCTCTATGTC chrII:161493-161573 49 2.74e-05 CCTGAAGGAG CAGCTGTC TTCACTAAGT chrX:2452478-2452558 15 4.03e-05 ATTTGAAAAG CAGTTGCC CTTTCTCTCA chrII:8749259-8749339 67 4.03e-05 TCGTTTTCTC CAGTTGCC TCCGAA chrII:1502038-1502118 27 5.16e-05 TGACCCCTTG CAGCTGCC CAAGCAGTCT chrIII:6402497-6402577 42 5.16e-05 ATGTCCATGT CAGCTGCC TCTTATTCTT chrI:14533014-14533094 35 5.16e-05 TGGCCAGTAG CAGCTGCC ACCTTCTCTC chrV:14847466-14847546 1 5.16e-05 . CAGCTGCC GTCTCACCGC chrIII:7217301-7217381 11 6.41e-05 GATTGGGGTC CCGTTGTC CAAAATCCCA chrV:13414774-13414854 39 6.41e-05 CCATGATCTG CCGTTGTC TGGCATGAGG chrX:3706473-3706553 67 6.41e-05 GGCTCCCGTC CCGTTGTC CCCCAT chrII:10025234-10025314 66 8.06e-05 ATTGGGCAAT CAGTTGTT GTCATTG chrI:6236008-6236088 41 8.06e-05 TACTATGTGT CAGTTGTT CCTCTTTCTT chrX:12248323-12248403 58 1.06e-04 CTGTCTTTGT CAGCTGTT GTTTTATGAT chrX:16392304-16392384 23 1.06e-04 GCACAGTGGG CAGCTGTT CGTCGCAATG chrX:14039741-14039821 4 1.31e-04 TCT CCGTTGCC TTCATCCACT chrV:4777758-4777838 46 1.31e-04 CTTCCCGTGT CAGTTGGC TCATCCGCTC chrX:3733480-3733560 38 1.67e-04 GGAACCAAAA CAGCTGGC TCAGATACAC chrV:5995757-5995837 28 1.80e-04 TCAACACGAA CAGCTGCT CCGTGGTGAC chrX:3488281-3488361 61 1.94e-04 GGCCGATTTG CAGGTGTC AACCGCAGAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGYTGYC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:3631790-3631870 1.5e-05 38_[+4]_34 chrX:12672076-12672156 1.5e-05 50_[+4]_22 chrX:14653672-14653752 1.5e-05 36_[+4]_36 chrIV:12010545-12010625 1.5e-05 17_[+4]_55 chrX:14288019-14288099 1.5e-05 1_[+4]_71 chrI:5589568-5589648 2.7e-05 48_[+4]_24 chrII:161493-161573 2.7e-05 48_[+4]_24 chrX:2452478-2452558 4e-05 14_[+4]_58 chrII:8749259-8749339 4e-05 66_[+4]_6 chrII:1502038-1502118 5.2e-05 26_[+4]_46 chrIII:6402497-6402577 5.2e-05 41_[+4]_31 chrI:14533014-14533094 5.2e-05 34_[+4]_38 chrV:14847466-14847546 5.2e-05 [+4]_72 chrIII:7217301-7217381 6.4e-05 10_[+4]_62 chrV:13414774-13414854 6.4e-05 38_[+4]_34 chrX:3706473-3706553 6.4e-05 66_[+4]_6 chrII:10025234-10025314 8.1e-05 65_[+4]_7 chrI:6236008-6236088 8.1e-05 40_[+4]_32 chrX:12248323-12248403 0.00011 57_[+4]_15 chrX:16392304-16392384 0.00011 22_[+4]_50 chrX:14039741-14039821 0.00013 3_[+4]_69 chrV:4777758-4777838 0.00013 45_[+4]_27 chrX:3733480-3733560 0.00017 37_[+4]_35 chrV:5995757-5995837 0.00018 27_[+4]_45 chrX:3488281-3488361 0.00019 60_[+4]_12 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGYTGYC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CAGYTGYC width=8 seqs=25 chrX:3631790-3631870 ( 39) CAGTTGTC 1 chrX:12672076-12672156 ( 51) CAGTTGTC 1 chrX:14653672-14653752 ( 37) CAGTTGTC 1 chrIV:12010545-12010625 ( 18) CAGTTGTC 1 chrX:14288019-14288099 ( 2) CAGTTGTC 1 chrI:5589568-5589648 ( 49) CAGCTGTC 1 chrII:161493-161573 ( 49) CAGCTGTC 1 chrX:2452478-2452558 ( 15) CAGTTGCC 1 chrII:8749259-8749339 ( 67) CAGTTGCC 1 chrII:1502038-1502118 ( 27) CAGCTGCC 1 chrIII:6402497-6402577 ( 42) CAGCTGCC 1 chrI:14533014-14533094 ( 35) CAGCTGCC 1 chrV:14847466-14847546 ( 1) CAGCTGCC 1 chrIII:7217301-7217381 ( 11) CCGTTGTC 1 chrV:13414774-13414854 ( 39) CCGTTGTC 1 chrX:3706473-3706553 ( 67) CCGTTGTC 1 chrII:10025234-10025314 ( 66) CAGTTGTT 1 chrI:6236008-6236088 ( 41) CAGTTGTT 1 chrX:12248323-12248403 ( 58) CAGCTGTT 1 chrX:16392304-16392384 ( 23) CAGCTGTT 1 chrX:14039741-14039821 ( 4) CCGTTGCC 1 chrV:4777758-4777838 ( 46) CAGTTGGC 1 chrX:3733480-3733560 ( 38) CAGCTGGC 1 chrV:5995757-5995837 ( 28) CAGCTGCT 1 chrX:3488281-3488361 ( 61) CAGGTGTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGYTGYC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.1193 E= 3.8e+002 -1129 212 -1129 -1129 165 -52 -1129 -1129 -1129 -1129 204 -1129 -1129 80 -260 111 -1129 -1129 -1129 195 -1129 -1129 204 -1129 -1129 48 -160 121 -1129 180 -1129 -38 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGYTGYC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 25 E= 3.8e+002 0.000000 1.000000 0.000000 0.000000 0.840000 0.160000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.400000 0.040000 0.560000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.320000 0.080000 0.600000 0.000000 0.800000 0.000000 0.200000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGYTGYC MEME-4 regular expression -------------------------------------------------------------------------------- CAG[TC]TG[TC][CT] -------------------------------------------------------------------------------- Time 16.09 secs. ******************************************************************************** ******************************************************************************** MOTIF GTGTGTGT MEME-5 width = 8 sites = 18 llr = 161 E-value = 1.6e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif GTGTGTGT MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C 1:111::1 probability G 7:9:91a: matrix T 3a:9:9:9 bits 2.1 * 1.9 * * 1.7 ** *** 1.5 ******* Relative 1.3 ******* Entropy 1.1 ******* (12.9 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GTGTGTGT consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGTGT MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:7170231-7170311 42 1.59e-05 TCTTTGTTGT GTGTGTGT GTCTATCTCT chrI:7712834-7712914 36 1.59e-05 TTGAGTGCTT GTGTGTGT ATCAAGATTG chrV:14800513-14800593 42 1.59e-05 TTTTCTCCTC GTGTGTGT GCCGGGTTTT chrII:6028738-6028818 66 1.59e-05 GATGAGATGT GTGTGTGT GCTCTCC chrIII:6655976-6656056 20 1.59e-05 GCTAGAGAAT GTGTGTGT GAGCATGTCG chrI:433677-433757 16 1.59e-05 GTTGATACGT GTGTGTGT GTGGTGGTGG chrI:5690301-5690381 37 1.59e-05 TTCGTTTtgt gtgtgtgt gtttgtgtCA chrX:11560215-11560295 5 1.59e-05 CGAC GTGTGTGT AACACTAGAA chrX:2796306-2796386 41 3.30e-05 ATTGCAAACA TTGTGTGT ACTATTGTTG chrV:12233551-12233631 33 3.30e-05 CAAAGTGCCG TTGTGTGT ATGTGTGTAT chrI:9962942-9963022 36 6.11e-05 TTTTCTTTTC GTGCGTGT TGCAAACACC chrII:301169-301249 69 7.61e-05 TTATTTCCCT CTGTGTGT CCAA chrIII:461685-461765 49 1.21e-04 CAGAGCATGC GTGTCTGT TGTAAATTGG chrIII:7217301-7217381 64 1.21e-04 TTCTCTCACT GTCTGTGT CTCTTCAAT chrV:8802396-8802476 21 1.21e-04 GAAGATGGCG GTGTGGGT GGGAGAGCAC chrI:3842608-3842688 45 1.51e-04 TCTCTGCGAT TTGTGTGC TCTCTCGTCC chrIV:5535970-5536050 62 1.51e-04 AGAAACATTG TTGCGTGT CACACTCATT chrV:14153755-14153835 51 1.51e-04 GTGCTTGACT TTGTGTGC TCATTCTGAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGTGT MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:7170231-7170311 1.6e-05 41_[+5]_31 chrI:7712834-7712914 1.6e-05 35_[+5]_37 chrV:14800513-14800593 1.6e-05 41_[+5]_31 chrII:6028738-6028818 1.6e-05 65_[+5]_7 chrIII:6655976-6656056 1.6e-05 19_[+5]_53 chrI:433677-433757 1.6e-05 15_[+5]_57 chrI:5690301-5690381 1.6e-05 36_[+5]_36 chrX:11560215-11560295 1.6e-05 4_[+5]_68 chrX:2796306-2796386 3.3e-05 40_[+5]_32 chrV:12233551-12233631 3.3e-05 32_[+5]_40 chrI:9962942-9963022 6.1e-05 35_[+5]_37 chrII:301169-301249 7.6e-05 68_[+5]_4 chrIII:461685-461765 0.00012 48_[+5]_24 chrIII:7217301-7217381 0.00012 63_[+5]_9 chrV:8802396-8802476 0.00012 20_[+5]_52 chrI:3842608-3842688 0.00015 44_[+5]_28 chrIV:5535970-5536050 0.00015 61_[+5]_11 chrV:14153755-14153835 0.00015 50_[+5]_22 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGTGT MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GTGTGTGT width=8 seqs=18 chrX:7170231-7170311 ( 42) GTGTGTGT 1 chrI:7712834-7712914 ( 36) GTGTGTGT 1 chrV:14800513-14800593 ( 42) GTGTGTGT 1 chrII:6028738-6028818 ( 66) GTGTGTGT 1 chrIII:6655976-6656056 ( 20) GTGTGTGT 1 chrI:433677-433757 ( 16) GTGTGTGT 1 chrI:5690301-5690381 ( 37) GTGTGTGT 1 chrX:11560215-11560295 ( 5) GTGTGTGT 1 chrX:2796306-2796386 ( 41) TTGTGTGT 1 chrV:12233551-12233631 ( 33) TTGTGTGT 1 chrI:9962942-9963022 ( 36) GTGCGTGT 1 chrII:301169-301249 ( 69) CTGTGTGT 1 chrIII:461685-461765 ( 49) GTGTCTGT 1 chrIII:7217301-7217381 ( 64) GTCTGTGT 1 chrV:8802396-8802476 ( 21) GTGTGGGT 1 chrI:3842608-3842688 ( 45) TTGTGTGC 1 chrIV:5535970-5536050 ( 62) TTGCGTGT 1 chrV:14153755-14153835 ( 51) TTGTGTGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGTGT MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.8329 E= 1.6e+004 -1081 -204 146 10 -1081 -1081 -1081 195 -1081 -204 196 -1081 -1081 -104 -1081 178 -1081 -204 196 -1081 -1081 -1081 -212 186 -1081 -1081 204 -1081 -1081 -104 -1081 178 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGTGT MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 18 E= 1.6e+004 0.000000 0.055556 0.666667 0.277778 0.000000 0.000000 0.000000 1.000000 0.000000 0.055556 0.944444 0.000000 0.000000 0.111111 0.000000 0.888889 0.000000 0.055556 0.944444 0.000000 0.000000 0.000000 0.055556 0.944444 0.000000 0.000000 1.000000 0.000000 0.000000 0.111111 0.000000 0.888889 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGTGT MEME-5 regular expression -------------------------------------------------------------------------------- [GT]TGTGTGT -------------------------------------------------------------------------------- Time 19.53 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:2436868-2436948 6.96e-03 10_[+3(2.92e-05)]_62 chrV:20605988-20606068 9.85e-01 80 chrI:10491111-10491191 9.67e-04 4_[+3(2.01e-05)]_68 chrX:15470137-15470217 6.90e-01 80 chrII:2341191-2341271 8.07e-01 80 chrII:8749259-8749339 6.84e-02 66_[+4(4.03e-05)]_6 chrV:16249239-16249319 4.45e-01 80 chrV:2809675-2809755 3.10e-01 80 chrI:3891633-3891713 2.64e-01 80 chrIV:14507126-14507206 7.71e-01 80 chrX:14288019-14288099 9.38e-04 1_[+4(1.46e-05)]_61_[+2(7.21e-05)]_\ 2 chrV:11093593-11093673 2.69e-01 80 chrII:13738267-13738347 3.09e-01 80 chrX:10410786-10410866 1.60e-03 33_[+5(1.59e-05)]_39 chrIV:13719086-13719166 3.45e-02 80 chrI:3793507-3793587 4.34e-01 80 chrIII:3200707-3200787 1.51e-03 45_[+3(2.01e-05)]_27 chrX:8054697-8054777 1.66e-02 80 chrV:6204267-6204347 8.38e-02 4_[+2(7.21e-05)]_68 chrIV:9615646-9615726 3.78e-02 80 chrI:3405722-3405802 7.30e-01 80 chrX:3854082-3854162 4.40e-01 80 chrI:7028299-7028379 1.50e-01 80 chrV:11307937-11308017 6.53e-01 80 chrII:9645140-9645220 9.32e-01 80 chrI:3988773-3988853 2.50e-01 80 chrIII:3304776-3304856 8.81e-04 34_[+3(7.11e-05)]_38 chrX:16534679-16534759 5.69e-01 80 chrIII:9083214-9083294 4.84e-01 80 chrII:4184133-4184213 2.28e-02 27_[+1(4.02e-05)]_45 chrV:9295729-9295809 8.35e-01 80 chrX:2713111-2713191 4.28e-01 80 chrX:1109017-1109097 1.17e-01 80 chrX:1961488-1961568 2.95e-01 80 chrX:11560215-11560295 2.88e-03 4_[+5(1.59e-05)]_68 chrV:7822798-7822878 5.80e-02 7_[+1(6.78e-05)]_65 chrX:11035696-11035776 8.84e-01 80 chrV:19429793-19429873 9.89e-01 80 chrIII:7780701-7780781 7.51e-03 32_[+1(1.26e-05)]_40 chrI:5690301-5690381 1.25e-02 34_[+5(1.59e-05)]_38 chrIV:1911366-1911446 1.08e-03 3_[+3(2.92e-05)]_35_[+1(1.26e-05)]_\ 26 chrI:4881295-4881375 8.36e-01 80 chrIII:9642243-9642323 5.40e-03 80 chrII:7722911-7722991 9.11e-02 80 chrX:6239153-6239233 3.29e-02 80 chrX:1082098-1082178 7.00e-02 80 chrX:5195571-5195651 4.34e-01 80 chrI:14863593-14863673 3.66e-02 80 chrI:11963200-11963280 1.04e-02 42_[+1(2.59e-05)]_30 chrI:4046775-4046855 2.12e-02 11_[+1(6.78e-05)]_61 chrI:32737-32817 1.47e-01 80 chrV:18020763-18020843 7.50e-01 80 chrIV:9008083-9008163 3.77e-01 80 chrX:16392304-16392384 3.80e-02 80 chrX:8053138-8053218 4.67e-05 10_[+3(4.69e-05)]_7_[+1(6.78e-05)]_\ 35_[+2(7.21e-05)]_4 chrX:3455632-3455712 3.55e-01 80 chrX:6894315-6894395 1.36e-01 36_[+2(7.21e-05)]_36 chrII:4805917-4805997 1.98e-01 80 chrI:5020154-5020234 2.80e-02 80 chrI:7508266-7508346 1.06e-01 4_[+2(7.21e-05)]_68 chrX:3989191-3989271 1.72e-03 29_[+3(1.03e-05)]_43 chrIV:7095594-7095674 1.58e-01 80 chrX:8789156-8789236 1.62e-02 80 chrII:11602762-11602842 1.29e-03 54_[+1(2.59e-05)]_18 chrIII:12800753-12800833 7.52e-01 80 chrIII:8815801-8815881 8.97e-02 71_[+2(7.21e-05)]_1 chrX:3889721-3889801 9.06e-01 80 chrIV:13126148-13126228 1.09e-02 31_[+3(7.11e-05)]_41 chrV:10720629-10720709 4.97e-01 80 chrX:7523878-7523958 9.18e-01 80 chrV:14806364-14806444 8.96e-01 80 chrV:12518915-12518995 1.41e-01 31_[+2(7.21e-05)]_41 chrX:8723978-8724058 6.15e-01 80 chrI:5599508-5599588 2.07e-01 80 chrX:6591867-6591947 8.40e-01 80 chrX:9228535-9228615 1.19e-01 32_[+1(4.02e-05)]_40 chrX:7485874-7485954 1.73e-01 80 chrX:11057244-11057324 9.73e-01 80 chrV:5296111-5296191 1.23e-01 80 chrIV:1108207-1108287 6.82e-01 80 chrIV:4686970-4687050 7.17e-01 80 chrII:5841319-5841399 3.30e-01 80 chrIII:3600062-3600142 4.43e-01 80 chrV:13346051-13346131 6.53e-01 80 chrI:6236008-6236088 9.01e-04 40_[+4(8.06e-05)]_23_[+3(9.36e-05)]_\ 1 chrV:9958740-9958820 1.01e-01 80 chrX:7573684-7573764 5.19e-01 80 chrX:12248323-12248403 8.17e-03 80 chrX:4068308-4068388 1.10e-01 18_[+3(2.01e-05)]_54 chrIII:3914983-3915063 1.25e-01 80 chrX:3706473-3706553 3.80e-04 26_[+1(1.26e-05)]_32_[+4(6.41e-05)]_\ 6 chrX:7640003-7640083 6.79e-01 80 chrI:10590634-10590714 5.81e-01 80 chrX:16655430-16655510 4.45e-02 37_[+2(7.21e-05)]_35 chrV:8802396-8802476 3.08e-02 80 chrIV:7098721-7098801 2.93e-01 80 chrV:6202787-6202867 1.26e-01 7_[+2(7.21e-05)]_65 chrIV:7426201-7426281 5.32e-01 80 chrI:433677-433757 1.81e-02 13_[+5(1.59e-05)]_59 chrI:9546339-9546419 3.89e-02 37_[+3(4.69e-05)]_35 chrIII:8839944-8840024 4.88e-01 80 chrV:12233551-12233631 1.08e-03 32_[+5(3.30e-05)]_40 chrX:3412073-3412153 6.96e-01 80 chrII:7801998-7802078 4.75e-02 53_[+1(9.31e-05)]_19 chrI:9962942-9963022 1.03e-02 35_[+5(6.11e-05)]_37 chrX:3488281-3488361 6.65e-02 80 chrIII:6463587-6463667 2.05e-01 80 chrIV:1107307-1107387 6.15e-04 16_[+1(2.59e-05)]_56 chrI:4475197-4475277 8.14e-03 35_[+1(1.26e-05)]_[+1(1.26e-05)]_29 chrIII:9641137-9641217 1.13e-01 53_[+2(7.21e-05)]_19 chrV:11074628-11074708 2.87e-01 80 chrX:5506746-5506826 7.80e-03 28_[+3(2.92e-05)]_44 chrII:4520414-4520494 2.55e-01 80 chrIV:12637461-12637541 2.25e-02 80 chrX:4522280-4522360 4.47e-01 80 chrIV:12012573-12012653 5.72e-01 80 chrIV:8533524-8533604 9.18e-02 80 chrI:2967782-2967862 2.30e-01 66_[+2(7.21e-05)]_6 chrI:4941322-4941402 1.56e-02 10_[+1(6.78e-05)]_62 chrX:17456893-17456973 6.28e-01 80 chrI:1792650-1792730 7.40e-02 42_[+1(6.78e-05)]_30 chrI:6843431-6843511 7.12e-01 80 chrIV:11068467-11068547 4.96e-02 42_[+2(7.21e-05)]_30 chrI:10262272-10262352 1.16e-01 80 chrX:15014080-15014160 3.39e-02 28_[+3(2.01e-05)]_44 chrII:8783691-8783771 6.15e-02 80 chrI:608866-608946 1.07e-02 7_[+2(7.21e-05)]_34_[+1(8.20e-05)]_\ 23 chrIII:7620282-7620362 5.49e-01 80 chrX:11379489-11379569 4.94e-01 80 chrI:14862307-14862387 2.69e-02 23_[+2(7.21e-05)]_49 chrV:4157489-4157569 2.46e-01 80 chrI:6238417-6238497 1.31e-01 80 chrX:3190383-3190463 7.51e-01 80 chrX:3733480-3733560 2.92e-01 80 chrX:2796306-2796386 9.52e-02 40_[+5(3.30e-05)]_32 chrV:4777758-4777838 8.94e-02 80 chrX:1311225-1311305 3.24e-03 [+1(1.26e-05)]_72 chrIV:13695896-13695976 3.50e-01 80 chrX:2520687-2520767 6.01e-01 80 chrV:6768738-6768818 6.62e-02 80 chrX:3689489-3689569 4.71e-01 80 chrIII:10248926-10249006 1.03e-01 34_[+2(7.21e-05)]_38 chrX:9300577-9300657 2.14e-01 80 chrIII:6655976-6656056 6.57e-05 19_[+5(1.59e-05)]_53 chrII:10025234-10025314 2.58e-01 65_[+4(8.06e-05)]_7 chrV:6352505-6352585 3.63e-01 80 chrV:13414774-13414854 8.56e-04 38_[+4(6.41e-05)]_11_[+2(7.21e-05)]_\ 15 chrV:11309034-11309114 9.69e-01 80 chrX:16796131-16796211 9.81e-01 80 chrIV:13704139-13704219 1.27e-01 31_[+2(7.21e-05)]_41 chrIV:12366738-12366818 2.06e-01 80 chrIII:5563835-5563915 1.25e-01 25_[+2(7.21e-05)]_47 chrV:13393550-13393630 2.17e-01 80 chrI:11294214-11294294 4.26e-02 57_[+2(7.21e-05)]_15 chrX:16389462-16389542 8.75e-01 80 chrX:5061971-5062051 3.67e-01 80 chrV:14847466-14847546 9.15e-04 [+4(5.16e-05)]_29_[+1(4.02e-05)]_35 chrIV:10261293-10261373 4.93e-01 80 chrIV:12010545-12010625 5.82e-03 17_[+4(1.46e-05)]_55 chrX:5592640-5592720 3.07e-01 80 chrV:11034894-11034974 7.54e-03 15_[+1(1.26e-05)]_57 chrIII:7880484-7880564 6.72e-01 80 chrII:8499164-8499244 1.71e-01 80 chrI:13495210-13495290 4.87e-01 80 chrX:4957371-4957451 8.89e-01 80 chrX:14039741-14039821 3.55e-02 80 chrII:4518424-4518504 9.22e-01 80 chrX:14653672-14653752 5.78e-04 36_[+4(1.46e-05)]_36 chrIII:7217301-7217381 1.71e-03 10_[+4(6.41e-05)]_62 chrIV:9613277-9613357 3.13e-01 80 chrI:8985990-8986070 1.96e-02 80 chrX:17458991-17459071 2.77e-01 80 chrIV:5820196-5820276 9.29e-02 80 chrV:14625682-14625762 2.47e-02 8_[+1(1.26e-05)]_64 chrI:10280701-10280781 4.96e-01 80 chrX:14292744-14292824 1.82e-01 23_[+1(8.20e-05)]_49 chrX:12672076-12672156 3.64e-03 50_[+4(1.46e-05)]_22 chrIII:11093614-11093694 6.14e-01 80 chrII:6028738-6028818 6.86e-04 63_[+5(1.59e-05)]_9 chrX:5818393-5818473 4.20e-02 80 chrX:11474346-11474426 3.73e-01 80 chrI:13686807-13686887 3.81e-02 80 chrIII:3927676-3927756 1.27e-02 80 chrX:6399612-6399692 1.98e-02 80 chrX:12511573-12511653 3.37e-02 80 chrV:5995757-5995837 4.14e-02 80 chrX:2885479-2885559 7.84e-01 80 chrV:4491434-4491514 1.43e-02 80 chrII:301169-301249 8.56e-03 68_[+5(7.61e-05)]_4 chrX:6057731-6057811 7.98e-03 28_[+1(1.26e-05)]_[+1(1.26e-05)]_36 chrV:20771813-20771893 1.29e-03 18_[+1(2.59e-05)]_54 chrI:14628090-14628170 5.16e-01 80 chrV:6030726-6030806 2.34e-01 80 chrIII:6132260-6132340 2.95e-01 80 chrIII:7215698-7215778 9.55e-03 44_[+1(2.59e-05)]_28 chrV:18712201-18712281 8.79e-01 80 chrV:14800513-14800593 3.27e-04 41_[+5(1.59e-05)]_31 chrIV:7659694-7659774 4.00e-01 80 chrV:16553048-16553128 5.30e-01 80 chrV:12234763-12234843 1.16e-03 63_[+1(1.26e-05)]_9 chrIII:7560003-7560083 3.47e-01 80 chrIV:3014786-3014866 2.74e-01 80 chrII:11076674-11076754 6.23e-01 80 chrII:161493-161573 3.42e-03 48_[+4(2.74e-05)]_24 chrX:11463647-11463727 8.77e-01 80 chrI:527549-527629 6.77e-02 61_[+1(8.20e-05)]_11 chrV:14153755-14153835 3.62e-02 80 chrX:13873485-13873565 1.69e-02 80 chrI:14898730-14898810 4.42e-01 80 chrIV:5535970-5536050 1.96e-01 80 chrII:6545179-6545259 3.99e-01 80 chrIV:14032926-14033006 1.26e-02 31_[+1(1.26e-05)]_[+1(8.20e-05)]_33 chrIII:9240130-9240210 1.51e-01 55_[+2(7.21e-05)]_17 chrIII:461685-461765 1.23e-02 80 chrI:3987838-3987918 2.66e-02 80 chrI:7321641-7321721 2.02e-01 80 chrIII:11942809-11942889 5.75e-01 80 chrI:7712834-7712914 5.36e-02 12_[+5(6.11e-05)]_15_[+5(1.59e-05)]_\ 37 chrI:5997553-5997633 1.30e-02 2_[+1(1.26e-05)]_70 chrIII:13635965-13636045 5.27e-01 80 chrIII:1238888-1238968 8.58e-01 80 chrX:2452478-2452558 2.13e-03 14_[+4(4.03e-05)]_1_[+1(4.02e-05)]_\ 36_[+4(8.06e-05)]_5 chrX:9931599-9931679 7.76e-02 45_[+2(7.21e-05)]_27 chrIV:13699573-13699653 1.58e-01 80 chrV:6930447-6930527 5.32e-03 45_[+1(2.59e-05)]_27 chrI:5589568-5589648 8.42e-05 37_[+2(7.21e-05)]_3_[+4(2.74e-05)]_\ 24 chrX:13409722-13409802 9.45e-01 80 chrI:7383289-7383369 1.29e-01 80 chrI:14533014-14533094 1.21e-06 34_[+4(5.16e-05)]_4_[+1(1.26e-05)]_\ 26 chrIII:5835324-5835404 1.60e-01 80 chrV:20793969-20794049 6.41e-01 80 chrX:3900946-3901026 7.20e-01 80 chrI:14806603-14806683 7.13e-01 80 chrIV:7723749-7723829 4.57e-01 80 chrX:7170231-7170311 1.81e-03 39_[+5(1.59e-05)]_33 chrII:6303341-6303421 1.77e-04 64_[+1(2.59e-05)]_8 chrII:6683814-6683894 1.09e-01 80 chrV:4502775-4502855 1.95e-01 80 chrII:4394672-4394752 2.93e-01 3_[+2(7.21e-05)]_69 chrIII:4358454-4358534 2.29e-03 34_[+2(7.21e-05)]_38 chrII:6825930-6826010 3.89e-03 45_[+1(1.26e-05)]_3_[+1(4.02e-05)]_\ 16 chrI:3842608-3842688 4.98e-06 15_[+1(9.31e-05)]_35_[+3(1.03e-05)]_\ 14 chrIV:17108368-17108448 1.69e-01 80 chrIII:6402497-6402577 2.06e-02 41_[+4(5.16e-05)]_31 chrII:10204790-10204870 1.49e-02 48_[+1(6.78e-05)]_24 chrII:1502038-1502118 3.10e-02 26_[+4(5.16e-05)]_46 chrV:11082574-11082654 3.82e-01 80 chrX:7528127-7528207 9.95e-01 80 chrII:9307006-9307086 1.04e-01 80 chrX:3631790-3631870 8.95e-02 24_[+4(8.06e-05)]_6_[+4(1.46e-05)]_\ 3_[+4(1.46e-05)]_3_[+4(1.46e-05)]_3_[+4(1.46e-05)]_1 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n10.farnam.hpc.yale.internal ********************************************************************************