******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/worm/fasta/RankLinear2.0_40/repo-1.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrII:846493-846573 1.0000 80 chrIII:9854369-9854449 1.0000 80 chrI:2877534-2877614 1.0000 80 chrIV:7189843-7189923 1.0000 80 chrV:1263257-1263337 1.0000 80 chrIV:8537635-8537715 1.0000 80 chrIV:10913286-10913366 1.0000 80 chrIII:13624488-13624568 1.0000 80 chrIII:10354459-10354539 1.0000 80 chrI:10732202-10732282 1.0000 80 chrIV:11915215-11915295 1.0000 80 chrX:7581292-7581372 1.0000 80 chrIV:5386152-5386232 1.0000 80 chrII:12057250-12057330 1.0000 80 chrII:11538470-11538550 1.0000 80 chrV:12307184-12307264 1.0000 80 chrIV:658947-659027 1.0000 80 chrIII:3793865-3793945 1.0000 80 chrV:13467476-13467556 1.0000 80 chrI:4182541-4182621 1.0000 80 chrIV:11941202-11941282 1.0000 80 chrV:11817297-11817377 1.0000 80 chrII:12793800-12793880 1.0000 80 chrII:9685684-9685764 1.0000 80 chrII:7057228-7057308 1.0000 80 chrIII:8233071-8233151 1.0000 80 chrV:2130244-2130324 1.0000 80 chrII:5178754-5178834 1.0000 80 chrIV:8307547-8307627 1.0000 80 chrIV:11859328-11859408 1.0000 80 chrV:13049967-13050047 1.0000 80 chrV:4189747-4189827 1.0000 80 chrX:13350205-13350285 1.0000 80 chrII:7055861-7055941 1.0000 80 chrX:6661490-6661570 1.0000 80 chrI:4648492-4648572 1.0000 80 chrIV:1459610-1459690 1.0000 80 chrIV:5650875-5650955 1.0000 80 chrI:14657675-14657755 1.0000 80 chrIV:17466557-17466637 1.0000 80 chrIII:11171437-11171517 1.0000 80 chrIV:9806473-9806553 1.0000 80 chrIII:10246152-10246232 1.0000 80 chrII:6892676-6892756 1.0000 80 chrIII:5368660-5368740 1.0000 80 chrV:13653055-13653135 1.0000 80 chrIV:3746004-3746084 1.0000 80 chrIV:3609010-3609090 1.0000 80 chrIV:5086363-5086443 1.0000 80 chrIII:3653340-3653420 1.0000 80 chrI:4656011-4656091 1.0000 80 chrV:9787654-9787734 1.0000 80 chrX:6376996-6377076 1.0000 80 chrIV:13390904-13390984 1.0000 80 chrV:5715099-5715179 1.0000 80 chrIV:11183338-11183418 1.0000 80 chrII:5917067-5917147 1.0000 80 chrI:5803678-5803758 1.0000 80 chrV:6326526-6326606 1.0000 80 chrI:7123478-7123558 1.0000 80 chrIV:13081075-13081155 1.0000 80 chrIV:8262768-8262848 1.0000 80 chrIII:7773644-7773724 1.0000 80 chrV:7082526-7082606 1.0000 80 chrX:6609442-6609522 1.0000 80 chrX:5694285-5694365 1.0000 80 chrX:12796396-12796476 1.0000 80 chrIV:3373520-3373600 1.0000 80 chrIII:8976693-8976773 1.0000 80 chrIII:5588741-5588821 1.0000 80 chrII:6559044-6559124 1.0000 80 chrX:5939065-5939145 1.0000 80 chrI:5123610-5123690 1.0000 80 chrI:6837082-6837162 1.0000 80 chrII:4948303-4948383 1.0000 80 chrV:10896660-10896740 1.0000 80 chrIII:909573-909653 1.0000 80 chrI:6177652-6177732 1.0000 80 chrX:3235331-3235411 1.0000 80 chrX:3408900-3408980 1.0000 80 chrII:5892993-5893073 1.0000 80 chrII:10545962-10546042 1.0000 80 chrIV:11025220-11025300 1.0000 80 chrIII:3902753-3902833 1.0000 80 chrII:9639904-9639984 1.0000 80 chrI:2584010-2584090 1.0000 80 chrIV:14795985-14796065 1.0000 80 chrIV:16168817-16168897 1.0000 80 chrV:6325522-6325602 1.0000 80 chrV:20717031-20717111 1.0000 80 chrIV:6603721-6603801 1.0000 80 chrV:20791234-20791314 1.0000 80 chrIII:8652281-8652361 1.0000 80 chrIII:9623656-9623736 1.0000 80 chrX:5106256-5106336 1.0000 80 chrX:4191749-4191829 1.0000 80 chrIII:5681975-5682055 1.0000 80 chrV:19946417-19946497 1.0000 80 chrIV:8266537-8266617 1.0000 80 chrI:3160742-3160822 1.0000 80 chrIV:13782700-13782780 1.0000 80 chrII:5575097-5575177 1.0000 80 chrII:5546699-5546779 1.0000 80 chrIV:6552159-6552239 1.0000 80 chrIII:7268127-7268207 1.0000 80 chrIV:11638433-11638513 1.0000 80 chrX:11511204-11511284 1.0000 80 chrIV:5386466-5386546 1.0000 80 chrIV:11479030-11479110 1.0000 80 chrV:12004832-12004912 1.0000 80 chrX:5103579-5103659 1.0000 80 chrIV:763213-763293 1.0000 80 chrI:3834369-3834449 1.0000 80 chrIV:3871587-3871667 1.0000 80 chrII:12995409-12995489 1.0000 80 chrII:6851721-6851801 1.0000 80 chrII:8280748-8280828 1.0000 80 chrII:7863181-7863261 1.0000 80 chrX:6376245-6376325 1.0000 80 chrI:6206624-6206704 1.0000 80 chrIV:17105739-17105819 1.0000 80 chrIV:17270315-17270395 1.0000 80 chrI:4965363-4965443 1.0000 80 chrIV:2497963-2498043 1.0000 80 chrIII:6450115-6450195 1.0000 80 chrII:8746622-8746702 1.0000 80 chrIV:13300292-13300372 1.0000 80 chrII:7100947-7101027 1.0000 80 chrIII:13551413-13551493 1.0000 80 chrIV:4747774-4747854 1.0000 80 chrV:3775463-3775543 1.0000 80 chrIV:7551327-7551407 1.0000 80 chrII:7773759-7773839 1.0000 80 chrIII:9441261-9441341 1.0000 80 chrX:3092746-3092826 1.0000 80 chrII:9684566-9684646 1.0000 80 chrII:5423696-5423776 1.0000 80 chrIII:3792613-3792693 1.0000 80 chrII:11542149-11542229 1.0000 80 chrIV:8741095-8741175 1.0000 80 chrV:727521-727601 1.0000 80 chrII:6736308-6736388 1.0000 80 chrIV:16167340-16167420 1.0000 80 chrIII:11062983-11063063 1.0000 80 chrV:10953821-10953901 1.0000 80 chrI:7578974-7579054 1.0000 80 chrV:7680925-7681005 1.0000 80 chrI:7601437-7601517 1.0000 80 chrX:13470902-13470982 1.0000 80 chrIV:2927233-2927313 1.0000 80 chrIII:7369483-7369563 1.0000 80 chrI:2853610-2853690 1.0000 80 chrII:10926898-10926978 1.0000 80 chrIII:5273436-5273516 1.0000 80 chrX:15036407-15036487 1.0000 80 chrV:9517793-9517873 1.0000 80 chrIV:4511610-4511690 1.0000 80 chrIV:5937121-5937201 1.0000 80 chrV:6278519-6278599 1.0000 80 chrIII:9751153-9751233 1.0000 80 chrX:11343674-11343754 1.0000 80 chrX:13106923-13107003 1.0000 80 chrX:1489767-1489847 1.0000 80 chrIV:6340410-6340490 1.0000 80 chrIII:3865040-3865120 1.0000 80 chrV:14595122-14595202 1.0000 80 chrV:14828598-14828678 1.0000 80 chrV:12063165-12063245 1.0000 80 chrX:6200609-6200689 1.0000 80 chrIV:15473871-15473951 1.0000 80 chrIV:5660508-5660588 1.0000 80 chrIII:3795258-3795338 1.0000 80 chrV:20790429-20790509 1.0000 80 chrII:10450562-10450642 1.0000 80 chrIII:6381145-6381225 1.0000 80 chrV:4190332-4190412 1.0000 80 chrV:18575285-18575365 1.0000 80 chrII:9597815-9597895 1.0000 80 chrI:10764266-10764346 1.0000 80 chrI:6499767-6499847 1.0000 80 chrIII:7977503-7977583 1.0000 80 chrII:14400793-14400873 1.0000 80 chrIV:6744036-6744116 1.0000 80 chrIII:13546718-13546798 1.0000 80 chrV:5275820-5275900 1.0000 80 chrV:18573382-18573462 1.0000 80 chrX:13108074-13108154 1.0000 80 chrX:14808762-14808842 1.0000 80 chrII:9886235-9886315 1.0000 80 chrII:12055905-12055985 1.0000 80 chrIII:191054-191134 1.0000 80 chrV:15513445-15513525 1.0000 80 chrV:11508502-11508582 1.0000 80 chrIV:16950216-16950296 1.0000 80 chrIII:13299252-13299332 1.0000 80 chrI:2728740-2728820 1.0000 80 chrV:5836108-5836188 1.0000 80 chrX:4193276-4193356 1.0000 80 chrII:11651043-11651123 1.0000 80 chrIV:8514737-8514817 1.0000 80 chrIV:3046997-3047077 1.0000 80 chrI:4177513-4177593 1.0000 80 chrV:7777249-7777329 1.0000 80 chrIV:4082991-4083071 1.0000 80 chrV:20783748-20783828 1.0000 80 chrIV:3046186-3046266 1.0000 80 chrIII:9824674-9824754 1.0000 80 chrIV:7925084-7925164 1.0000 80 chrIII:3503337-3503417 1.0000 80 chrX:8087129-8087209 1.0000 80 chrII:8745521-8745601 1.0000 80 chrII:11784408-11784488 1.0000 80 chrIII:6900942-6901022 1.0000 80 chrV:6217830-6217910 1.0000 80 chrV:6045879-6045959 1.0000 80 chrII:10098479-10098559 1.0000 80 chrV:11924141-11924221 1.0000 80 chrIII:5196480-5196560 1.0000 80 chrII:12994168-12994248 1.0000 80 chrIII:8449361-8449441 1.0000 80 chrV:10887637-10887717 1.0000 80 chrIV:9438962-9439042 1.0000 80 chrV:16744897-16744977 1.0000 80 chrIII:1508892-1508972 1.0000 80 chrIII:13763630-13763710 1.0000 80 chrV:6223912-6223992 1.0000 80 chrIII:12816343-12816423 1.0000 80 chrX:7314639-7314719 1.0000 80 chrII:10543812-10543892 1.0000 80 chrII:8929948-8930028 1.0000 80 chrII:10242556-10242636 1.0000 80 chrII:1145989-1146069 1.0000 80 chrIII:9060481-9060561 1.0000 80 chrIV:12037161-12037241 1.0000 80 chrV:10968149-10968229 1.0000 80 chrIV:3382484-3382564 1.0000 80 chrII:41952-42032 1.0000 80 chrV:7858180-7858260 1.0000 80 chrIII:8450649-8450729 1.0000 80 chrX:4246369-4246449 1.0000 80 chrV:9786775-9786855 1.0000 80 chrX:3409100-3409180 1.0000 80 chrV:4906322-4906402 1.0000 80 chrIV:11913360-11913440 1.0000 80 chrIV:2307453-2307533 1.0000 80 chrIII:6195794-6195874 1.0000 80 chrIII:8849601-8849681 1.0000 80 chrX:3113106-3113186 1.0000 80 chrV:1157733-1157813 1.0000 80 chrIII:8686989-8687069 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/worm/inference_raw/MEME/RankLinear2.0_40_repo-1/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/worm/fasta/RankLinear2.0_40/repo-1.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.288 C 0.211 G 0.205 T 0.296 Background letter frequencies (from file dataset with add-one prior applied): A 0.288 C 0.211 G 0.206 T 0.296 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF AATTTTCG MEME-1 width = 8 sites = 30 llr = 254 E-value = 2.2e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif AATTTTCG MEME-1 Description -------------------------------------------------------------------------------- Simplified A 881::::: pos.-specific C 22::::7: probability G :::::::a matrix T ::9aaa3: bits 2.3 2.1 * 1.8 *** * 1.6 *** * Relative 1.4 **** * Entropy 1.1 ******** (12.2 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel AATTTTCG consensus CC T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AATTTTCG MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIV:11913360-11913440 28 2.77e-05 aattgaactt aattttcg gcagcaccga chrIV:6744036-6744116 35 2.77e-05 TATCATGTCG AATTTTCG ATCTATCCGG chrIV:5660508-5660588 67 2.77e-05 AGAAAACGGG AATTTTCG GAATTA chrV:7680925-7681005 30 2.77e-05 ATGCAACGCA AATTTTCG GTGCTCTTTC chrIV:2497963-2498043 20 2.77e-05 AAAAACGGCA AATTTTCG GTTTTTTTCA chrIV:13782700-13782780 57 2.77e-05 CTTTTCCAGG AATTTTCG AATAGTTTCT chrV:20717031-20717111 30 2.77e-05 gcaaatcggc aattttcg gaaaattgtg chrIII:10246152-10246232 16 2.77e-05 AAAATCTTAA AATTTTCG GTTTTCCGAT chrIII:1508892-1508972 9 6.82e-05 ATTTACAC CATTTTCG TGTGTCATTT chrX:14808762-14808842 5 6.82e-05 GGTA CATTTTCG GAGCATAAAT chrV:18573382-18573462 34 6.82e-05 ACACAAGTAA CATTTTCG CTCACACTGT chrIV:5937121-5937201 12 6.82e-05 TTGGTGCTCG ACTTTTCG ATCGATATTT chrIII:7268127-7268207 61 6.82e-05 CTTTCCGTCG ACTTTTCG AAAACATCCG chrV:6325522-6325602 28 6.82e-05 TTATCTCCGA CATTTTCG CCAACTATGG chrIII:5368660-5368740 8 6.82e-05 gttgata acttttcg ttgttgcggg chrI:4648492-4648572 3 6.82e-05 CC ACTTTTCG TACTCGTTTT chrV:13467476-13467556 48 6.82e-05 GGAATCTGCC CATTTTCG CAACTCTGAA chrII:846493-846573 48 6.82e-05 AGCACCCCAA ACTTTTCG GGCAGTTTGG chrIII:6900942-6901022 68 1.07e-04 AAAAATGTGA AATTTTTG GGTGA chrIV:15473871-15473951 30 1.07e-04 ATTTTAGGTG AATTTTTG AGTGGTTTTT chrIII:8976693-8976773 2 1.07e-04 c aatttttg cgccaaacgt chrX:6376996-6377076 26 1.07e-04 GAGCACTGAA AATTTTTG AGTTAGGCAA chrIII:11171437-11171517 66 1.07e-04 TCAAATTTCA AATTTTTG TGGGGAT chrIII:9751153-9751233 8 1.79e-04 ATAAAAA CATTTTTG TACAGTAGAA chrV:6278519-6278599 13 1.79e-04 caaacctttg actttttg ccatagtgca chrI:7601437-7601517 36 1.79e-04 TATTTGTCAT CATTTTTG CATTGGCGGG chrIV:13081075-13081155 5 1.79e-04 TCTC ACTTTTTG ATAAACTATC chrIII:13299252-13299332 50 2.06e-04 CTTATCTGCA AAATTTCG ATTTTTTAAA chrII:5178754-5178834 3 2.06e-04 cg aaatttcg aaactacagt chrX:13108074-13108154 22 2.55e-04 TGATAAAACA AATTTTCC AAAAACTGAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AATTTTCG MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:11913360-11913440 2.8e-05 27_[+1]_45 chrIV:6744036-6744116 2.8e-05 34_[+1]_38 chrIV:5660508-5660588 2.8e-05 66_[+1]_6 chrV:7680925-7681005 2.8e-05 29_[+1]_43 chrIV:2497963-2498043 2.8e-05 19_[+1]_53 chrIV:13782700-13782780 2.8e-05 56_[+1]_16 chrV:20717031-20717111 2.8e-05 29_[+1]_43 chrIII:10246152-10246232 2.8e-05 15_[+1]_57 chrIII:1508892-1508972 6.8e-05 8_[+1]_64 chrX:14808762-14808842 6.8e-05 4_[+1]_68 chrV:18573382-18573462 6.8e-05 33_[+1]_39 chrIV:5937121-5937201 6.8e-05 11_[+1]_61 chrIII:7268127-7268207 6.8e-05 60_[+1]_12 chrV:6325522-6325602 6.8e-05 27_[+1]_45 chrIII:5368660-5368740 6.8e-05 7_[+1]_65 chrI:4648492-4648572 6.8e-05 2_[+1]_70 chrV:13467476-13467556 6.8e-05 47_[+1]_25 chrII:846493-846573 6.8e-05 47_[+1]_25 chrIII:6900942-6901022 0.00011 67_[+1]_5 chrIV:15473871-15473951 0.00011 29_[+1]_43 chrIII:8976693-8976773 0.00011 1_[+1]_71 chrX:6376996-6377076 0.00011 25_[+1]_47 chrIII:11171437-11171517 0.00011 65_[+1]_7 chrIII:9751153-9751233 0.00018 7_[+1]_65 chrV:6278519-6278599 0.00018 12_[+1]_60 chrI:7601437-7601517 0.00018 35_[+1]_37 chrIV:13081075-13081155 0.00018 4_[+1]_68 chrIII:13299252-13299332 0.00021 49_[+1]_23 chrII:5178754-5178834 0.00021 2_[+1]_70 chrX:13108074-13108154 0.00025 21_[+1]_51 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AATTTTCG MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AATTTTCG width=8 seqs=30 chrIV:11913360-11913440 ( 28) AATTTTCG 1 chrIV:6744036-6744116 ( 35) AATTTTCG 1 chrIV:5660508-5660588 ( 67) AATTTTCG 1 chrV:7680925-7681005 ( 30) AATTTTCG 1 chrIV:2497963-2498043 ( 20) AATTTTCG 1 chrIV:13782700-13782780 ( 57) AATTTTCG 1 chrV:20717031-20717111 ( 30) AATTTTCG 1 chrIII:10246152-10246232 ( 16) AATTTTCG 1 chrIII:1508892-1508972 ( 9) CATTTTCG 1 chrX:14808762-14808842 ( 5) CATTTTCG 1 chrV:18573382-18573462 ( 34) CATTTTCG 1 chrIV:5937121-5937201 ( 12) ACTTTTCG 1 chrIII:7268127-7268207 ( 61) ACTTTTCG 1 chrV:6325522-6325602 ( 28) CATTTTCG 1 chrIII:5368660-5368740 ( 8) ACTTTTCG 1 chrI:4648492-4648572 ( 3) ACTTTTCG 1 chrV:13467476-13467556 ( 48) CATTTTCG 1 chrII:846493-846573 ( 48) ACTTTTCG 1 chrIII:6900942-6901022 ( 68) AATTTTTG 1 chrIV:15473871-15473951 ( 30) AATTTTTG 1 chrIII:8976693-8976773 ( 2) AATTTTTG 1 chrX:6376996-6377076 ( 26) AATTTTTG 1 chrIII:11171437-11171517 ( 66) AATTTTTG 1 chrIII:9751153-9751233 ( 8) CATTTTTG 1 chrV:6278519-6278599 ( 13) ACTTTTTG 1 chrI:7601437-7601517 ( 36) CATTTTTG 1 chrIV:13081075-13081155 ( 5) ACTTTTTG 1 chrIII:13299252-13299332 ( 50) AAATTTCG 1 chrII:5178754-5178834 ( 3) AAATTTCG 1 chrX:13108074-13108154 ( 22) AATTTTCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AATTTTCG MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.5224 E= 2.2e+000 141 15 -1155 -1155 141 15 -1155 -1155 -211 -1155 -1155 166 -1155 -1155 -1155 176 -1155 -1155 -1155 176 -1155 -1155 -1155 176 -1155 173 -1155 2 -1155 -266 223 -1155 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AATTTTCG MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 30 E= 2.2e+000 0.766667 0.233333 0.000000 0.000000 0.766667 0.233333 0.000000 0.000000 0.066667 0.000000 0.000000 0.933333 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.700000 0.000000 0.300000 0.000000 0.033333 0.966667 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AATTTTCG MEME-1 regular expression -------------------------------------------------------------------------------- [AC][AC]TTTT[CT]G -------------------------------------------------------------------------------- Time 9.19 secs. ******************************************************************************** ******************************************************************************** MOTIF AAAAATTS MEME-2 width = 8 sites = 20 llr = 181 E-value = 5.0e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif AAAAATTS MEME-2 Description -------------------------------------------------------------------------------- Simplified A 7aaaa::: pos.-specific C :::::::5 probability G 3::::::6 matrix T :::::aa: bits 2.3 2.1 1.8 ****** 1.6 ****** Relative 1.4 ******* Entropy 1.1 ******** (13.0 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel AAAAATTG consensus G C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAATTS MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrV:5275820-5275900 46 3.58e-05 GGGGGCGAGA AAAAATTG TGTGGGAAAC chrV:12063165-12063245 3 3.58e-05 GA AAAAATTG CTGGTTTTTG chrI:2853610-2853690 14 3.58e-05 TAAGAAAACG AAAAATTG TAATGTTAAA chrIV:16167340-16167420 49 3.58e-05 CCTGAAAATT AAAAATTG ATTAAATTCA chrII:9684566-9684646 42 3.58e-05 AATCCACTGA AAAAATTG CGTCCAATCG chrX:5694285-5694365 15 3.58e-05 AAATAACCTC AAAAATTG AAAATGTTTA chrIII:10246152-10246232 41 3.58e-05 GATATGTCGG AAAAATTG ATTTTTTAGT chrI:4182541-4182621 38 3.58e-05 atttatcaaa aaaaattg ccgcgtcaag chrIV:3382484-3382564 6 7.24e-05 TAGCC AAAAATTC ACAAAAAAGT chrIII:191054-191134 68 7.24e-05 AAAAATGGCG AAAAATTC CAATT chrIV:15473871-15473951 62 7.24e-05 TGGAAATTGG AAAAATTC GAAAAAATTA chrX:6200609-6200689 26 7.24e-05 CATACCTCGC AAAAATTC CGTTCGCCAG chrIV:2497963-2498043 40 7.24e-05 TTTTTTCAGG AAAAATTC TCTAAAACCC chrV:12307184-12307264 44 7.24e-05 ACCTATTTTC AAAAATTC TACTCAACAA chrIV:2927233-2927313 4 9.80e-05 GCC GAAAATTG ATTTTTCGGC chrV:20717031-20717111 38 9.80e-05 gcaattttcg gaaaattg tgaatttgca chrI:14657675-14657755 65 9.80e-05 AATTTCGAAT GAAAATTG CCAAATGT chrV:1157733-1157813 42 1.24e-04 AGAAAGTGTA GAAAATTC CCTCTTTTCG chrIII:13546718-13546798 61 1.24e-04 TTTTTTGCTA GAAAATTC AAATTTCCAG chrII:10450562-10450642 68 1.24e-04 GCGCTCTGTT GAAAATTC AAAAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAATTS MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:5275820-5275900 3.6e-05 45_[+2]_27 chrV:12063165-12063245 3.6e-05 2_[+2]_70 chrI:2853610-2853690 3.6e-05 13_[+2]_59 chrIV:16167340-16167420 3.6e-05 48_[+2]_24 chrII:9684566-9684646 3.6e-05 41_[+2]_31 chrX:5694285-5694365 3.6e-05 14_[+2]_58 chrIII:10246152-10246232 3.6e-05 40_[+2]_32 chrI:4182541-4182621 3.6e-05 37_[+2]_35 chrIV:3382484-3382564 7.2e-05 5_[+2]_67 chrIII:191054-191134 7.2e-05 67_[+2]_5 chrIV:15473871-15473951 7.2e-05 61_[+2]_11 chrX:6200609-6200689 7.2e-05 25_[+2]_47 chrIV:2497963-2498043 7.2e-05 39_[+2]_33 chrV:12307184-12307264 7.2e-05 43_[+2]_29 chrIV:2927233-2927313 9.8e-05 3_[+2]_69 chrV:20717031-20717111 9.8e-05 37_[+2]_35 chrI:14657675-14657755 9.8e-05 64_[+2]_8 chrV:1157733-1157813 0.00012 41_[+2]_31 chrIII:13546718-13546798 0.00012 60_[+2]_12 chrII:10450562-10450642 0.00012 67_[+2]_5 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAATTS MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AAAAATTS width=8 seqs=20 chrV:5275820-5275900 ( 46) AAAAATTG 1 chrV:12063165-12063245 ( 3) AAAAATTG 1 chrI:2853610-2853690 ( 14) AAAAATTG 1 chrIV:16167340-16167420 ( 49) AAAAATTG 1 chrII:9684566-9684646 ( 42) AAAAATTG 1 chrX:5694285-5694365 ( 15) AAAAATTG 1 chrIII:10246152-10246232 ( 41) AAAAATTG 1 chrI:4182541-4182621 ( 38) AAAAATTG 1 chrIV:3382484-3382564 ( 6) AAAAATTC 1 chrIII:191054-191134 ( 68) AAAAATTC 1 chrIV:15473871-15473951 ( 62) AAAAATTC 1 chrX:6200609-6200689 ( 26) AAAAATTC 1 chrIV:2497963-2498043 ( 40) AAAAATTC 1 chrV:12307184-12307264 ( 44) AAAAATTC 1 chrIV:2927233-2927313 ( 4) GAAAATTG 1 chrV:20717031-20717111 ( 38) GAAAATTG 1 chrI:14657675-14657755 ( 65) GAAAATTG 1 chrV:1157733-1157813 ( 42) GAAAATTC 1 chrIII:13546718-13546798 ( 61) GAAAATTC 1 chrII:10450562-10450642 ( 68) GAAAATTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAATTS MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.7763 E= 5.0e+002 128 -1097 55 -1097 180 -1097 -1097 -1097 180 -1097 -1097 -1097 180 -1097 -1097 -1097 180 -1097 -1097 -1097 -1097 -1097 -1097 176 -1097 -1097 -1097 176 -1097 110 142 -1097 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAATTS MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 20 E= 5.0e+002 0.700000 0.000000 0.300000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.450000 0.550000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAATTS MEME-2 regular expression -------------------------------------------------------------------------------- [AG]AAAATT[GC] -------------------------------------------------------------------------------- Time 12.92 secs. ******************************************************************************** ******************************************************************************** MOTIF GGAAKCCG MEME-3 width = 8 sites = 9 llr = 95 E-value = 5.8e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGAAKCCG MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::aa:::: pos.-specific C 2::::aa: probability G 8a::6::a matrix T ::::4::: bits 2.3 * *** 2.1 * *** 1.8 *** *** 1.6 **** *** Relative 1.4 **** *** Entropy 1.1 ******** (15.2 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GGAAGCCG consensus C T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAAKCCG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrII:12055905-12055985 46 6.65e-06 GGTACACCCA GGAAGCCG TCGATTGGGC chrII:10926898-10926978 27 6.65e-06 AGCTCTACTT GGAAGCCG GAGCAGACTT chrV:10896660-10896740 33 6.65e-06 TTAATAACAA GGAAGCCG AATAAATTAA chrX:13350205-13350285 70 6.65e-06 AGCAAGAGCT GGAAGCCG AGA chrIII:13551413-13551493 52 1.62e-05 GAGAGAAATA GGAATCCG AGAAGCAGCA chrI:6837082-6837162 56 1.62e-05 CAACTTGTAC GGAATCCG CGAGTCTCTC chrV:13653055-13653135 73 1.62e-05 CTTTCGAAGT GGAATCCG chrIII:5681975-5682055 63 2.30e-05 ATGCTCTTCT CGAAGCCG TTCACCATCG chrII:9684566-9684646 58 3.28e-05 TGCGTCCAAT CGAATCCG ATACGATTTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAAKCCG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:12055905-12055985 6.6e-06 45_[+3]_27 chrII:10926898-10926978 6.6e-06 26_[+3]_46 chrV:10896660-10896740 6.6e-06 32_[+3]_40 chrX:13350205-13350285 6.6e-06 69_[+3]_3 chrIII:13551413-13551493 1.6e-05 51_[+3]_21 chrI:6837082-6837162 1.6e-05 55_[+3]_17 chrV:13653055-13653135 1.6e-05 72_[+3] chrIII:5681975-5682055 2.3e-05 62_[+3]_10 chrII:9684566-9684646 3.3e-05 57_[+3]_15 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAAKCCG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGAAKCCG width=8 seqs=9 chrII:12055905-12055985 ( 46) GGAAGCCG 1 chrII:10926898-10926978 ( 27) GGAAGCCG 1 chrV:10896660-10896740 ( 33) GGAAGCCG 1 chrX:13350205-13350285 ( 70) GGAAGCCG 1 chrIII:13551413-13551493 ( 52) GGAATCCG 1 chrI:6837082-6837162 ( 56) GGAATCCG 1 chrV:13653055-13653135 ( 73) GGAATCCG 1 chrIII:5681975-5682055 ( 63) CGAAGCCG 1 chrII:9684566-9684646 ( 58) CGAATCCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAAKCCG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.8333 E= 5.8e+002 -982 8 192 -982 -982 -982 228 -982 180 -982 -982 -982 180 -982 -982 -982 -982 -982 143 59 -982 225 -982 -982 -982 225 -982 -982 -982 -982 228 -982 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAAKCCG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 9 E= 5.8e+002 0.000000 0.222222 0.777778 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.555556 0.444444 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAAKCCG MEME-3 regular expression -------------------------------------------------------------------------------- [GC]GAA[GT]CCG -------------------------------------------------------------------------------- Time 16.57 secs. ******************************************************************************** ******************************************************************************** MOTIF GGAATCGA MEME-4 width = 8 sites = 7 llr = 75 E-value = 1.2e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGAATCGA MEME-4 Description -------------------------------------------------------------------------------- Simplified A ::aa3::a pos.-specific C :::::a:: probability G aa::::a: matrix T ::::7::: bits 2.3 ** ** 2.1 ** ** 1.8 **** *** 1.6 **** *** Relative 1.4 **** *** Entropy 1.1 **** *** (15.4 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GGAATCGA consensus A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAATCGA MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIV:16950216-16950296 51 1.30e-05 CATATCGCCG GGAATCGA ATCTATGTAC chrII:12055905-12055985 5 1.30e-05 CGCC GGAATCGA ATCCCGTCTG chrIII:3795258-3795338 60 1.30e-05 ATGACTGCTG GGAATCGA CCAATTGATC chrIV:14795985-14796065 17 1.30e-05 TCTGGCCAGT GGAATCGA CAAAAGACCC chrI:4656011-4656091 61 1.30e-05 AATCAATACG GGAATCGA ATGCAAGGAG chrV:5275820-5275900 58 2.57e-05 AAATTGTGTG GGAAACGA GAATCGTGGA chrII:8280748-8280828 52 2.57e-05 ACTTGCTACC GGAAACGA CGTATTTTGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAATCGA MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:16950216-16950296 1.3e-05 50_[+4]_22 chrII:12055905-12055985 1.3e-05 4_[+4]_68 chrIII:3795258-3795338 1.3e-05 59_[+4]_13 chrIV:14795985-14796065 1.3e-05 16_[+4]_56 chrI:4656011-4656091 1.3e-05 60_[+4]_12 chrV:5275820-5275900 2.6e-05 57_[+4]_15 chrII:8280748-8280828 2.6e-05 51_[+4]_21 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAATCGA MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGAATCGA width=8 seqs=7 chrIV:16950216-16950296 ( 51) GGAATCGA 1 chrII:12055905-12055985 ( 5) GGAATCGA 1 chrIII:3795258-3795338 ( 60) GGAATCGA 1 chrIV:14795985-14796065 ( 17) GGAATCGA 1 chrI:4656011-4656091 ( 61) GGAATCGA 1 chrV:5275820-5275900 ( 58) GGAAACGA 1 chrII:8280748-8280828 ( 52) GGAAACGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAATCGA MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.1915 E= 1.2e+004 -945 -945 228 -945 -945 -945 228 -945 179 -945 -945 -945 179 -945 -945 -945 -1 -945 -945 127 -945 225 -945 -945 -945 -945 228 -945 179 -945 -945 -945 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAATCGA MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 1.2e+004 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.285714 0.000000 0.000000 0.714286 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAATCGA MEME-4 regular expression -------------------------------------------------------------------------------- GGAA[TA]CGA -------------------------------------------------------------------------------- Time 20.20 secs. ******************************************************************************** ******************************************************************************** MOTIF CWGAAAWW MEME-5 width = 8 sites = 37 llr = 291 E-value = 5.6e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif CWGAAAWW MEME-5 Description -------------------------------------------------------------------------------- Simplified A :4:aaa43 pos.-specific C a::::::2 probability G ::a:::2: matrix T :5::::45 bits 2.3 * * 2.1 * * 1.8 * **** 1.6 * **** Relative 1.4 * **** Entropy 1.1 * **** (11.3 bits) 0.9 * **** 0.7 ****** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CTGAAATT consensus A AA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CWGAAAWW MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrV:14828598-14828678 69 2.69e-05 CCAAAATCAT CTGAAATT ACGT chrIV:4511610-4511690 26 2.69e-05 ATTATCTGAT CTGAAATT AATTTTTTTT chrII:11542149-11542229 13 2.69e-05 CGCCATTGTA CTGAAATT TGTGGCATTT chrIV:17105739-17105819 57 2.69e-05 CCAGTCATTG CTGAAATT CCACCACCAG chrV:20717031-20717111 67 2.69e-05 attttttttt ctgaaatt tcataa chrX:12796396-12796476 21 2.69e-05 TTTTCGATGG CTGAAATT TGAAAAGTTA chrI:5803678-5803758 55 2.69e-05 GTCCAATTTT CTGAAATT ATTCATTTCT chrIV:2927233-2927313 32 5.31e-05 GTTGAAAAAG CTGAAAAT GGGTATTATT chrIV:16167340-16167420 40 5.31e-05 AGAAAAACGC CTGAAAAT TAAAAATTGA chrV:13049967-13050047 32 5.31e-05 TGTGATGCAT CTGAAAAT GTTTTTTGAA chrIII:9854369-9854449 32 5.31e-05 CAATGGGAAT CTGAAAAT CAATTTATTA chrIV:3871587-3871667 3 7.93e-05 TC CAGAAATT TCCATAAACC chrIV:3609010-3609090 19 7.93e-05 GCCCCCGCAT CAGAAATT CCGGACGATG chrI:14657675-14657755 14 7.93e-05 CCAACTTTTC CAGAAATT TTTTCAAACA chrIII:11062983-11063063 58 1.05e-04 CTGGAAATTA CAGAAAAT TTTGAAATCG chrIV:11915215-11915295 59 1.05e-04 TGTTAGGGTG CAGAAAAT ATCCTAGTAC chrIII:8686989-8687069 45 1.31e-04 CTTTTGGATC CTGAAATA TATTGGAAAT chrIV:13390904-13390984 72 1.31e-04 AAGAGCATCT CTGAAATA T chrIV:3382484-3382564 54 1.57e-04 AATTTTAAGA CTGAAAAA TCTTCGGTAT chrV:13467476-13467556 61 1.57e-04 TTTCGCAACT CTGAAAAA AAGGATTTTT chrIII:13624488-13624568 53 1.57e-04 TCCAGGCATG CTGAAAAA GCGCAAATCG chrV:6217830-6217910 69 1.82e-04 TTACCAAAAA CAGAAATA TCGT chrIV:7925084-7925164 48 1.82e-04 CAACTGTTGG CAGAAATA TACCGAATTC chrIII:7977503-7977583 55 1.82e-04 ACTTCAACGT CAGAAATA TCACTGACAA chrIII:9060481-9060561 44 2.26e-04 GTGGTTGGAA CTGAAAGT AACGTTATTT chrIV:7551327-7551407 45 2.82e-04 AAAATAGTTT CAGAAAGT GAACCTGGCA chrIV:6552159-6552239 71 2.82e-04 CGTCGTCTTG CTGAAAAC TA chrX:8087129-8087209 46 3.00e-04 GCGCATAACA CAGAAATC TTATCGGCAT chrIV:5660508-5660588 56 3.37e-04 TTCTAGAATT CAGAAAAC GGGAATTTTC chrIV:11479030-11479110 60 3.37e-04 GCAGTGATTA CTGAAAGA TTATATTTAT chrX:11511204-11511284 43 3.37e-04 TAGTTATAGT CAGAAAAC GATTTTGCAA chrIII:3902753-3902833 5 3.37e-04 AGGT CAGAAAAC GGCGGGAAAA chrIV:13081075-13081155 66 3.37e-04 ACCACAGATC CAGAAAAC TGATATC chrX:7581292-7581372 14 3.37e-04 AAGAGGAAGA CTGAAAGA TGAAAAAAAA chrV:10968149-10968229 43 3.54e-04 AACCTGATCG CAGAAAGA GTGACAGTGT chrX:5939065-5939145 45 3.54e-04 GGAGCTCCTC CAGAAAGA ATTTGTCGAA chrX:4193276-4193356 20 4.19e-04 TCTCACTTTC CCGAAAAT ATGATGATCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CWGAAAWW MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:14828598-14828678 2.7e-05 68_[+5]_4 chrIV:4511610-4511690 2.7e-05 25_[+5]_47 chrII:11542149-11542229 2.7e-05 12_[+5]_60 chrIV:17105739-17105819 2.7e-05 56_[+5]_16 chrV:20717031-20717111 2.7e-05 66_[+5]_6 chrX:12796396-12796476 2.7e-05 20_[+5]_52 chrI:5803678-5803758 2.7e-05 54_[+5]_18 chrIV:2927233-2927313 5.3e-05 31_[+5]_41 chrIV:16167340-16167420 5.3e-05 39_[+5]_33 chrV:13049967-13050047 5.3e-05 31_[+5]_41 chrIII:9854369-9854449 5.3e-05 31_[+5]_41 chrIV:3871587-3871667 7.9e-05 2_[+5]_70 chrIV:3609010-3609090 7.9e-05 18_[+5]_54 chrI:14657675-14657755 7.9e-05 13_[+5]_59 chrIII:11062983-11063063 0.0001 57_[+5]_15 chrIV:11915215-11915295 0.0001 58_[+5]_14 chrIII:8686989-8687069 0.00013 44_[+5]_28 chrIV:13390904-13390984 0.00013 71_[+5]_1 chrIV:3382484-3382564 0.00016 53_[+5]_19 chrV:13467476-13467556 0.00016 60_[+5]_12 chrIII:13624488-13624568 0.00016 52_[+5]_20 chrV:6217830-6217910 0.00018 68_[+5]_4 chrIV:7925084-7925164 0.00018 47_[+5]_25 chrIII:7977503-7977583 0.00018 54_[+5]_18 chrIII:9060481-9060561 0.00023 43_[+5]_29 chrIV:7551327-7551407 0.00028 44_[+5]_28 chrIV:6552159-6552239 0.00028 70_[+5]_2 chrX:8087129-8087209 0.0003 45_[+5]_27 chrIV:5660508-5660588 0.00034 55_[+5]_17 chrIV:11479030-11479110 0.00034 59_[+5]_13 chrX:11511204-11511284 0.00034 42_[+5]_30 chrIII:3902753-3902833 0.00034 4_[+5]_68 chrIV:13081075-13081155 0.00034 65_[+5]_7 chrX:7581292-7581372 0.00034 13_[+5]_59 chrV:10968149-10968229 0.00035 42_[+5]_30 chrX:5939065-5939145 0.00035 44_[+5]_28 chrX:4193276-4193356 0.00042 19_[+5]_53 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CWGAAAWW MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CWGAAAWW width=8 seqs=37 chrV:14828598-14828678 ( 69) CTGAAATT 1 chrIV:4511610-4511690 ( 26) CTGAAATT 1 chrII:11542149-11542229 ( 13) CTGAAATT 1 chrIV:17105739-17105819 ( 57) CTGAAATT 1 chrV:20717031-20717111 ( 67) CTGAAATT 1 chrX:12796396-12796476 ( 21) CTGAAATT 1 chrI:5803678-5803758 ( 55) CTGAAATT 1 chrIV:2927233-2927313 ( 32) CTGAAAAT 1 chrIV:16167340-16167420 ( 40) CTGAAAAT 1 chrV:13049967-13050047 ( 32) CTGAAAAT 1 chrIII:9854369-9854449 ( 32) CTGAAAAT 1 chrIV:3871587-3871667 ( 3) CAGAAATT 1 chrIV:3609010-3609090 ( 19) CAGAAATT 1 chrI:14657675-14657755 ( 14) CAGAAATT 1 chrIII:11062983-11063063 ( 58) CAGAAAAT 1 chrIV:11915215-11915295 ( 59) CAGAAAAT 1 chrIII:8686989-8687069 ( 45) CTGAAATA 1 chrIV:13390904-13390984 ( 72) CTGAAATA 1 chrIV:3382484-3382564 ( 54) CTGAAAAA 1 chrV:13467476-13467556 ( 61) CTGAAAAA 1 chrIII:13624488-13624568 ( 53) CTGAAAAA 1 chrV:6217830-6217910 ( 69) CAGAAATA 1 chrIV:7925084-7925164 ( 48) CAGAAATA 1 chrIII:7977503-7977583 ( 55) CAGAAATA 1 chrIII:9060481-9060561 ( 44) CTGAAAGT 1 chrIV:7551327-7551407 ( 45) CAGAAAGT 1 chrIV:6552159-6552239 ( 71) CTGAAAAC 1 chrX:8087129-8087209 ( 46) CAGAAATC 1 chrIV:5660508-5660588 ( 56) CAGAAAAC 1 chrIV:11479030-11479110 ( 60) CTGAAAGA 1 chrX:11511204-11511284 ( 43) CAGAAAAC 1 chrIII:3902753-3902833 ( 5) CAGAAAAC 1 chrIV:13081075-13081155 ( 66) CAGAAAAC 1 chrX:7581292-7581372 ( 14) CTGAAAGA 1 chrV:10968149-10968229 ( 43) CAGAAAGA 1 chrX:5939065-5939145 ( 45) CAGAAAGA 1 chrX:4193276-4193356 ( 20) CCGAAAAT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CWGAAAWW MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.81773 E= 5.6e+003 -1185 225 -1185 -1185 59 -296 -1185 87 -1185 -1185 228 -1185 180 -1185 -1185 -1185 180 -1185 -1185 -1185 180 -1185 -1185 -1185 49 -1185 -34 55 17 -38 -1185 79 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CWGAAAWW MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 37 E= 5.6e+003 0.000000 1.000000 0.000000 0.000000 0.432432 0.027027 0.000000 0.540541 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.405405 0.000000 0.162162 0.432432 0.324324 0.162162 0.000000 0.513514 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CWGAAAWW MEME-5 regular expression -------------------------------------------------------------------------------- C[TA]GAAA[TA][TA] -------------------------------------------------------------------------------- Time 23.84 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:846493-846573 3.16e-02 47_[+1(6.82e-05)]_25 chrIII:9854369-9854449 2.87e-03 31_[+5(5.31e-05)]_41 chrI:2877534-2877614 4.07e-01 80 chrIV:7189843-7189923 3.32e-01 80 chrV:1263257-1263337 4.00e-01 80 chrIV:8537635-8537715 4.15e-01 80 chrIV:10913286-10913366 5.60e-01 80 chrIII:13624488-13624568 4.36e-02 80 chrIII:10354459-10354539 6.47e-01 80 chrI:10732202-10732282 2.72e-01 80 chrIV:11915215-11915295 3.05e-02 80 chrX:7581292-7581372 1.01e-01 80 chrIV:5386152-5386232 5.92e-01 80 chrII:12057250-12057330 1.56e-01 80 chrII:11538470-11538550 5.03e-01 80 chrV:12307184-12307264 5.47e-03 19_[+2(7.24e-05)]_16_[+2(7.24e-05)]_\ 29 chrIV:658947-659027 8.87e-02 80 chrIII:3793865-3793945 4.22e-02 80 chrV:13467476-13467556 5.03e-04 47_[+1(6.82e-05)]_25 chrI:4182541-4182621 2.43e-03 37_[+2(3.58e-05)]_35 chrIV:11941202-11941282 2.39e-01 80 chrV:11817297-11817377 3.47e-01 80 chrII:12793800-12793880 1.57e-01 80 chrII:9685684-9685764 5.51e-02 80 chrII:7057228-7057308 7.56e-01 80 chrIII:8233071-8233151 2.19e-01 80 chrV:2130244-2130324 1.65e-02 80 chrII:5178754-5178834 7.76e-02 80 chrIV:8307547-8307627 2.92e-01 80 chrIV:11859328-11859408 6.06e-01 80 chrV:13049967-13050047 1.69e-01 31_[+5(5.31e-05)]_41 chrV:4189747-4189827 2.12e-02 80 chrX:13350205-13350285 8.56e-03 69_[+3(6.65e-06)]_3 chrII:7055861-7055941 5.18e-01 80 chrX:6661490-6661570 8.65e-01 80 chrI:4648492-4648572 4.86e-02 2_[+1(6.82e-05)]_70 chrIV:1459610-1459690 9.25e-01 80 chrIV:5650875-5650955 4.65e-01 80 chrI:14657675-14657755 1.10e-03 13_[+5(7.93e-05)]_43_[+2(9.80e-05)]_\ 8 chrIV:17466557-17466637 4.03e-01 80 chrIII:11171437-11171517 5.11e-02 80 chrIV:9806473-9806553 8.91e-01 80 chrIII:10246152-10246232 5.53e-04 15_[+1(2.77e-05)]_17_[+2(3.58e-05)]_\ 32 chrII:6892676-6892756 1.76e-01 80 chrIII:5368660-5368740 1.48e-01 7_[+1(6.82e-05)]_65 chrV:13653055-13653135 3.71e-02 72_[+3(1.62e-05)] chrIV:3746004-3746084 9.51e-01 80 chrIV:3609010-3609090 1.01e-03 18_[+5(7.93e-05)]_54 chrIV:5086363-5086443 9.60e-01 80 chrIII:3653340-3653420 5.20e-03 80 chrI:4656011-4656091 4.61e-02 60_[+4(1.30e-05)]_12 chrV:9787654-9787734 6.86e-01 80 chrX:6376996-6377076 2.05e-03 20_[+5(5.31e-05)]_52 chrIV:13390904-13390984 2.18e-02 80 chrV:5715099-5715179 4.10e-01 80 chrIV:11183338-11183418 4.50e-01 80 chrII:5917067-5917147 4.52e-01 80 chrI:5803678-5803758 4.83e-03 54_[+5(2.69e-05)]_18 chrV:6326526-6326606 6.64e-01 80 chrI:7123478-7123558 2.41e-01 80 chrIV:13081075-13081155 1.92e-02 80 chrIV:8262768-8262848 5.12e-01 80 chrIII:7773644-7773724 4.39e-01 80 chrV:7082526-7082606 1.73e-01 80 chrX:6609442-6609522 8.66e-03 80 chrX:5694285-5694365 6.58e-02 14_[+2(3.58e-05)]_58 chrX:12796396-12796476 4.23e-02 20_[+5(2.69e-05)]_52 chrIV:3373520-3373600 4.15e-02 80 chrIII:8976693-8976773 5.93e-02 80 chrIII:5588741-5588821 3.03e-01 80 chrII:6559044-6559124 8.59e-01 80 chrX:5939065-5939145 5.43e-02 80 chrI:5123610-5123690 1.68e-01 80 chrI:6837082-6837162 2.22e-02 55_[+3(1.62e-05)]_17 chrII:4948303-4948383 2.91e-01 80 chrV:10896660-10896740 4.70e-03 32_[+3(6.65e-06)]_40 chrIII:909573-909653 5.37e-02 80 chrI:6177652-6177732 1.97e-01 80 chrX:3235331-3235411 8.32e-01 80 chrX:3408900-3408980 5.43e-01 80 chrII:5892993-5893073 9.68e-01 80 chrII:10545962-10546042 5.14e-01 80 chrIV:11025220-11025300 5.17e-01 80 chrIII:3902753-3902833 2.61e-01 80 chrII:9639904-9639984 8.16e-01 80 chrI:2584010-2584090 5.46e-01 80 chrIV:14795985-14796065 6.90e-02 16_[+4(1.30e-05)]_56 chrIV:16168817-16168897 6.84e-01 80 chrV:6325522-6325602 3.01e-02 27_[+1(6.82e-05)]_45 chrV:20717031-20717111 6.12e-05 29_[+1(2.77e-05)]_[+2(9.80e-05)]_21_\ [+5(2.69e-05)]_6 chrIV:6603721-6603801 1.51e-01 80 chrV:20791234-20791314 4.73e-01 80 chrIII:8652281-8652361 6.51e-01 80 chrIII:9623656-9623736 5.26e-01 80 chrX:5106256-5106336 9.50e-01 80 chrX:4191749-4191829 9.23e-01 80 chrIII:5681975-5682055 1.90e-02 62_[+3(2.30e-05)]_10 chrV:19946417-19946497 4.09e-01 80 chrIV:8266537-8266617 8.36e-01 80 chrI:3160742-3160822 6.69e-01 80 chrIV:13782700-13782780 2.36e-02 56_[+1(2.77e-05)]_16 chrII:5575097-5575177 3.88e-01 80 chrII:5546699-5546779 4.73e-01 80 chrIV:6552159-6552239 2.17e-01 80 chrIII:7268127-7268207 2.85e-02 60_[+1(6.82e-05)]_12 chrIV:11638433-11638513 9.88e-01 80 chrX:11511204-11511284 2.16e-02 80 chrIV:5386466-5386546 1.07e-01 80 chrIV:11479030-11479110 6.46e-02 80 chrV:12004832-12004912 8.37e-01 80 chrX:5103579-5103659 3.38e-01 80 chrIV:763213-763293 9.94e-01 80 chrI:3834369-3834449 2.27e-01 80 chrIV:3871587-3871667 9.18e-03 2_[+5(7.93e-05)]_70 chrII:12995409-12995489 4.89e-01 80 chrII:6851721-6851801 4.69e-01 80 chrII:8280748-8280828 1.78e-02 51_[+4(2.57e-05)]_21 chrII:7863181-7863261 6.75e-01 80 chrX:6376245-6376325 6.34e-01 80 chrI:6206624-6206704 3.02e-01 80 chrIV:17105739-17105819 1.29e-01 56_[+5(2.69e-05)]_16 chrIV:17270315-17270395 9.97e-01 80 chrI:4965363-4965443 3.75e-01 80 chrIV:2497963-2498043 3.73e-03 19_[+1(2.77e-05)]_12_[+2(7.24e-05)]_\ 33 chrIII:6450115-6450195 5.33e-02 80 chrII:8746622-8746702 3.43e-01 80 chrIV:13300292-13300372 8.25e-02 80 chrII:7100947-7101027 2.72e-01 80 chrIII:13551413-13551493 4.40e-04 51_[+3(1.62e-05)]_21 chrIV:4747774-4747854 1.20e-01 80 chrV:3775463-3775543 4.04e-01 80 chrIV:7551327-7551407 2.06e-02 80 chrII:7773759-7773839 4.78e-01 80 chrIII:9441261-9441341 3.46e-01 80 chrX:3092746-3092826 9.32e-01 80 chrII:9684566-9684646 3.05e-05 41_[+2(3.58e-05)]_8_[+3(3.28e-05)]_\ 15 chrII:5423696-5423776 3.40e-01 80 chrIII:3792613-3792693 5.82e-01 80 chrII:11542149-11542229 7.36e-03 12_[+5(2.69e-05)]_60 chrIV:8741095-8741175 2.81e-01 80 chrV:727521-727601 7.59e-01 80 chrII:6736308-6736388 3.39e-01 80 chrIV:16167340-16167420 4.12e-03 39_[+5(5.31e-05)]_1_[+2(3.58e-05)]_\ 24 chrIII:11062983-11063063 2.13e-03 80 chrV:10953821-10953901 8.06e-01 80 chrI:7578974-7579054 5.22e-01 80 chrV:7680925-7681005 1.09e-02 29_[+1(2.77e-05)]_43 chrI:7601437-7601517 3.33e-01 80 chrX:13470902-13470982 7.02e-01 80 chrIV:2927233-2927313 1.84e-03 3_[+2(9.80e-05)]_20_[+5(5.31e-05)]_\ 41 chrIII:7369483-7369563 4.00e-01 80 chrI:2853610-2853690 1.57e-03 13_[+2(3.58e-05)]_59 chrII:10926898-10926978 1.39e-02 26_[+3(6.65e-06)]_46 chrIII:5273436-5273516 5.66e-01 80 chrX:15036407-15036487 6.96e-01 80 chrV:9517793-9517873 1.74e-01 80 chrIV:4511610-4511690 5.18e-03 25_[+5(2.69e-05)]_47 chrIV:5937121-5937201 1.97e-02 11_[+1(6.82e-05)]_61 chrV:6278519-6278599 4.98e-03 80 chrIII:9751153-9751233 2.85e-02 80 chrX:11343674-11343754 5.59e-01 80 chrX:13106923-13107003 2.15e-01 80 chrX:1489767-1489847 3.13e-01 80 chrIV:6340410-6340490 9.90e-01 80 chrIII:3865040-3865120 9.50e-01 80 chrV:14595122-14595202 7.13e-01 80 chrV:14828598-14828678 7.40e-02 68_[+5(2.69e-05)]_4 chrV:12063165-12063245 8.53e-02 2_[+2(3.58e-05)]_70 chrX:6200609-6200689 2.18e-02 25_[+2(7.24e-05)]_47 chrIV:15473871-15473951 1.83e-03 61_[+2(7.24e-05)]_11 chrIV:5660508-5660588 3.01e-03 66_[+1(2.77e-05)]_6 chrIII:3795258-3795338 3.84e-02 59_[+4(1.30e-05)]_13 chrV:20790429-20790509 9.62e-01 80 chrII:10450562-10450642 1.06e-01 80 chrIII:6381145-6381225 7.18e-01 80 chrV:4190332-4190412 5.51e-03 80 chrV:18575285-18575365 6.68e-01 80 chrII:9597815-9597895 1.07e-01 80 chrI:10764266-10764346 4.36e-01 80 chrI:6499767-6499847 1.01e-01 80 chrIII:7977503-7977583 1.05e-01 80 chrII:14400793-14400873 8.73e-01 80 chrIV:6744036-6744116 5.36e-02 34_[+1(2.77e-05)]_38 chrIII:13546718-13546798 3.18e-02 80 chrV:5275820-5275900 2.50e-04 45_[+2(3.58e-05)]_4_[+4(2.57e-05)]_\ 15 chrV:18573382-18573462 6.07e-02 33_[+1(6.82e-05)]_39 chrX:13108074-13108154 5.95e-02 80 chrX:14808762-14808842 4.03e-02 4_[+1(6.82e-05)]_68 chrII:9886235-9886315 9.09e-01 80 chrII:12055905-12055985 5.47e-04 4_[+4(1.30e-05)]_33_[+3(6.65e-06)]_\ 27 chrIII:191054-191134 2.04e-02 67_[+2(7.24e-05)]_5 chrV:15513445-15513525 1.40e-01 80 chrV:11508502-11508582 6.47e-01 80 chrIV:16950216-16950296 1.38e-02 50_[+4(1.30e-05)]_22 chrIII:13299252-13299332 5.23e-02 80 chrI:2728740-2728820 7.31e-01 80 chrV:5836108-5836188 9.99e-01 80 chrX:4193276-4193356 3.00e-01 80 chrII:11651043-11651123 7.15e-01 80 chrIV:8514737-8514817 1.39e-01 80 chrIV:3046997-3047077 4.26e-02 80 chrI:4177513-4177593 4.07e-01 80 chrV:7777249-7777329 2.12e-01 80 chrIV:4082991-4083071 2.42e-01 80 chrV:20783748-20783828 6.73e-01 80 chrIV:3046186-3046266 7.49e-01 80 chrIII:9824674-9824754 5.44e-02 80 chrIV:7925084-7925164 1.38e-02 80 chrIII:3503337-3503417 3.93e-01 80 chrX:8087129-8087209 1.17e-01 80 chrII:8745521-8745601 5.79e-01 80 chrII:11784408-11784488 7.80e-01 80 chrIII:6900942-6901022 5.37e-02 80 chrV:6217830-6217910 1.02e-01 80 chrV:6045879-6045959 5.11e-01 80 chrII:10098479-10098559 5.40e-01 80 chrV:11924141-11924221 2.68e-01 80 chrIII:5196480-5196560 5.11e-01 80 chrII:12994168-12994248 9.89e-01 80 chrIII:8449361-8449441 4.10e-01 80 chrV:10887637-10887717 9.58e-01 80 chrIV:9438962-9439042 4.83e-01 80 chrV:16744897-16744977 6.80e-01 80 chrIII:1508892-1508972 1.53e-01 8_[+1(6.82e-05)]_64 chrIII:13763630-13763710 7.71e-01 80 chrV:6223912-6223992 9.97e-01 80 chrIII:12816343-12816423 1.04e-01 80 chrX:7314639-7314719 3.50e-01 80 chrII:10543812-10543892 2.74e-01 80 chrII:8929948-8930028 5.19e-01 80 chrII:10242556-10242636 8.23e-02 80 chrII:1145989-1146069 3.46e-01 80 chrIII:9060481-9060561 1.77e-02 80 chrIV:12037161-12037241 5.23e-02 45_[+4(4.41e-05)]_27 chrV:10968149-10968229 3.88e-01 80 chrIV:3382484-3382564 4.42e-03 5_[+2(7.24e-05)]_67 chrII:41952-42032 9.31e-02 80 chrV:7858180-7858260 8.26e-02 80 chrIII:8450649-8450729 9.91e-01 80 chrX:4246369-4246449 9.81e-01 80 chrV:9786775-9786855 1.73e-01 80 chrX:3409100-3409180 2.12e-01 80 chrV:4906322-4906402 3.22e-01 80 chrIV:11913360-11913440 2.05e-02 27_[+1(2.77e-05)]_45 chrIV:2307453-2307533 6.88e-02 80 chrIII:6195794-6195874 2.71e-01 80 chrIII:8849601-8849681 4.16e-01 80 chrX:3113106-3113186 2.11e-01 80 chrV:1157733-1157813 6.45e-02 80 chrIII:8686989-8687069 1.37e-01 80 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n11.farnam.hpc.yale.internal ********************************************************************************