******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/worm/fasta/RankLinear2.0_40/ref-2.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrX:7750265-7750345 1.0000 80 chrIII:6331865-6331945 1.0000 80 chrX:7745567-7745647 1.0000 80 chrV:3450701-3450781 1.0000 80 chrX:7723017-7723097 1.0000 80 chrX:7721786-7721866 1.0000 80 chrX:7456088-7456168 1.0000 80 chrII:937452-937532 1.0000 80 chrIII:6476566-6476646 1.0000 80 chrX:3977451-3977531 1.0000 80 chrIV:9267777-9267857 1.0000 80 chrV:1244181-1244261 1.0000 80 chrX:7728023-7728103 1.0000 80 chrIV:16403415-16403495 1.0000 80 chrV:20764788-20764868 1.0000 80 chrIV:2142457-2142537 1.0000 80 chrI:1731174-1731254 1.0000 80 chrV:6105504-6105584 1.0000 80 chrI:14230091-14230171 1.0000 80 chrIV:7521736-7521816 1.0000 80 chrIII:3876267-3876347 1.0000 80 chrIII:4461534-4461614 1.0000 80 chrI:11679098-11679178 1.0000 80 chrII:11890806-11890886 1.0000 80 chrI:3937173-3937253 1.0000 80 chrX:4809385-4809465 1.0000 80 chrV:14508174-14508254 1.0000 80 chrX:7749518-7749598 1.0000 80 chrII:4098898-4098978 1.0000 80 chrX:7747309-7747389 1.0000 80 chrII:8897410-8897490 1.0000 80 chrV:1570838-1570918 1.0000 80 chrV:14792400-14792480 1.0000 80 chrV:4029850-4029930 1.0000 80 chrX:9941560-9941640 1.0000 80 chrII:10149296-10149376 1.0000 80 chrIV:742056-742136 1.0000 80 chrX:14486667-14486747 1.0000 80 chrV:9452637-9452717 1.0000 80 chrIV:17099296-17099376 1.0000 80 chrX:14027086-14027166 1.0000 80 chrV:6545177-6545257 1.0000 80 chrI:11759980-11760060 1.0000 80 chrIII:9646640-9646720 1.0000 80 chrIII:2234292-2234372 1.0000 80 chrIII:9767337-9767417 1.0000 80 chrIV:1897763-1897843 1.0000 80 chrX:3070437-3070517 1.0000 80 chrX:10990640-10990720 1.0000 80 chrIII:6801127-6801207 1.0000 80 chrIII:7812381-7812461 1.0000 80 chrIV:4518264-4518344 1.0000 80 chrII:10820161-10820241 1.0000 80 chrIII:1430228-1430308 1.0000 80 chrV:6354366-6354446 1.0000 80 chrX:12007885-12007965 1.0000 80 chrIII:9990314-9990394 1.0000 80 chrIII:11832556-11832636 1.0000 80 chrII:11789664-11789744 1.0000 80 chrI:3332768-3332848 1.0000 80 chrI:6151632-6151712 1.0000 80 chrX:8384833-8384913 1.0000 80 chrII:9263165-9263245 1.0000 80 chrX:1575235-1575315 1.0000 80 chrII:9063472-9063552 1.0000 80 chrIV:2824348-2824428 1.0000 80 chrI:4684546-4684626 1.0000 80 chrIV:3826847-3826927 1.0000 80 chrI:8384723-8384803 1.0000 80 chrIII:10336473-10336553 1.0000 80 chrX:17464966-17465046 1.0000 80 chrI:7194979-7195059 1.0000 80 chrX:15347831-15347911 1.0000 80 chrIII:13713964-13714044 1.0000 80 chrII:15273088-15273168 1.0000 80 chrV:12539336-12539416 1.0000 80 chrII:11535644-11535724 1.0000 80 chrX:15310395-15310475 1.0000 80 chrV:154010-154090 1.0000 80 chrI:11779202-11779282 1.0000 80 chrIV:1901165-1901245 1.0000 80 chrI:521406-521486 1.0000 80 chrIII:12894348-12894428 1.0000 80 chrV:20535884-20535964 1.0000 80 chrII:6712490-6712570 1.0000 80 chrX:2330693-2330773 1.0000 80 chrI:10462710-10462790 1.0000 80 chrIV:11717287-11717367 1.0000 80 chrIV:4070984-4071064 1.0000 80 chrX:11578844-11578924 1.0000 80 chrII:9574573-9574653 1.0000 80 chrII:7678686-7678766 1.0000 80 chrV:20839629-20839709 1.0000 80 chrV:3218785-3218865 1.0000 80 chrI:7217483-7217563 1.0000 80 chrIV:4588608-4588688 1.0000 80 chrX:7457570-7457650 1.0000 80 chrI:7709259-7709339 1.0000 80 chrI:9940915-9940995 1.0000 80 chrIV:10570238-10570318 1.0000 80 chrII:8204880-8204960 1.0000 80 chrI:4032600-4032680 1.0000 80 chrV:9422900-9422980 1.0000 80 chrI:5214872-5214952 1.0000 80 chrIII:6013141-6013221 1.0000 80 chrIII:4455055-4455135 1.0000 80 chrIII:13779532-13779612 1.0000 80 chrIV:2891939-2892019 1.0000 80 chrI:1256081-1256161 1.0000 80 chrIV:5078103-5078183 1.0000 80 chrI:4976323-4976403 1.0000 80 chrIV:1354037-1354117 1.0000 80 chrX:7726100-7726180 1.0000 80 chrI:4572027-4572107 1.0000 80 chrX:9089676-9089756 1.0000 80 chrIV:1854097-1854177 1.0000 80 chrII:9313433-9313513 1.0000 80 chrIV:5978171-5978251 1.0000 80 chrX:5456923-5457003 1.0000 80 chrX:5698485-5698565 1.0000 80 chrX:11036500-11036580 1.0000 80 chrX:6066706-6066786 1.0000 80 chrI:7267016-7267096 1.0000 80 chrX:4551100-4551180 1.0000 80 chrX:5764853-5764933 1.0000 80 chrII:7679661-7679741 1.0000 80 chrV:6679885-6679965 1.0000 80 chrIV:3352206-3352286 1.0000 80 chrX:11384848-11384928 1.0000 80 chrX:2108362-2108442 1.0000 80 chrII:2775004-2775084 1.0000 80 chrV:14506080-14506160 1.0000 80 chrX:7728232-7728312 1.0000 80 chrIII:4010351-4010431 1.0000 80 chrII:6418149-6418229 1.0000 80 chrI:7715696-7715776 1.0000 80 chrV:156201-156281 1.0000 80 chrX:9939908-9939988 1.0000 80 chrIII:7490264-7490344 1.0000 80 chrI:1645647-1645727 1.0000 80 chrI:11062926-11063006 1.0000 80 chrIV:16410185-16410265 1.0000 80 chrIV:1687194-1687274 1.0000 80 chrX:11474335-11474415 1.0000 80 chrII:13456799-13456879 1.0000 80 chrIII:1054357-1054437 1.0000 80 chrX:13679081-13679161 1.0000 80 chrX:2776452-2776532 1.0000 80 chrIV:12396977-12397057 1.0000 80 chrX:6625455-6625535 1.0000 80 chrX:857856-857936 1.0000 80 chrIII:9112634-9112714 1.0000 80 chrII:5228021-5228101 1.0000 80 chrIII:5940105-5940185 1.0000 80 chrX:7729453-7729533 1.0000 80 chrII:8751200-8751280 1.0000 80 chrX:7460608-7460688 1.0000 80 chrII:9491170-9491250 1.0000 80 chrI:2296221-2296301 1.0000 80 chrIV:1019872-1019952 1.0000 80 chrX:12494675-12494755 1.0000 80 chrI:5422369-5422449 1.0000 80 chrV:16042372-16042452 1.0000 80 chrIII:11848481-11848561 1.0000 80 chrI:1132033-1132113 1.0000 80 chrIII:13780606-13780686 1.0000 80 chrV:2595905-2595985 1.0000 80 chrIV:10867866-10867946 1.0000 80 chrV:11701319-11701399 1.0000 80 chrI:5875678-5875758 1.0000 80 chrIV:4756064-4756144 1.0000 80 chrV:14177904-14177984 1.0000 80 chrI:7158978-7159058 1.0000 80 chrX:10596675-10596755 1.0000 80 chrI:14808481-14808561 1.0000 80 chrIV:4702253-4702333 1.0000 80 chrIII:13305397-13305477 1.0000 80 chrI:2419800-2419880 1.0000 80 chrIII:1929338-1929418 1.0000 80 chrIV:5561751-5561831 1.0000 80 chrI:5067295-5067375 1.0000 80 chrIII:6475641-6475721 1.0000 80 chrV:11673998-11674078 1.0000 80 chrIII:2305069-2305149 1.0000 80 chrII:6441215-6441295 1.0000 80 chrII:10784980-10785060 1.0000 80 chrIII:179299-179379 1.0000 80 chrI:5637885-5637965 1.0000 80 chrX:4813169-4813249 1.0000 80 chrI:2204875-2204955 1.0000 80 chrX:2498015-2498095 1.0000 80 chrI:14226429-14226509 1.0000 80 chrI:767288-767368 1.0000 80 chrII:4107297-4107377 1.0000 80 chrV:16553036-16553116 1.0000 80 chrIV:1908564-1908644 1.0000 80 chrX:10206321-10206401 1.0000 80 chrX:2802633-2802713 1.0000 80 chrII:10081410-10081490 1.0000 80 chrX:14581649-14581729 1.0000 80 chrII:4273827-4273907 1.0000 80 chrI:1559212-1559292 1.0000 80 chrIII:4128625-4128705 1.0000 80 chrII:873177-873257 1.0000 80 chrI:9116201-9116281 1.0000 80 chrIII:8901252-8901332 1.0000 80 chrV:3150154-3150234 1.0000 80 chrX:17330582-17330662 1.0000 80 chrIV:11984027-11984107 1.0000 80 chrII:15008557-15008637 1.0000 80 chrII:5877834-5877914 1.0000 80 chrI:636796-636876 1.0000 80 chrV:14432333-14432413 1.0000 80 chrIV:3279012-3279092 1.0000 80 chrI:11664935-11665015 1.0000 80 chrX:1120424-1120504 1.0000 80 chrV:17812235-17812315 1.0000 80 chrII:14248237-14248317 1.0000 80 chrX:5338093-5338173 1.0000 80 chrIII:9742159-9742239 1.0000 80 chrII:14015582-14015662 1.0000 80 chrV:14845565-14845645 1.0000 80 chrI:2487865-2487945 1.0000 80 chrIV:3521078-3521158 1.0000 80 chrI:3842537-3842617 1.0000 80 chrV:6541901-6541981 1.0000 80 chrII:11064322-11064402 1.0000 80 chrII:3999749-3999829 1.0000 80 chrI:7087736-7087816 1.0000 80 chrX:8252401-8252481 1.0000 80 chrI:2831531-2831611 1.0000 80 chrI:9440410-9440490 1.0000 80 chrX:11124163-11124243 1.0000 80 chrII:7358703-7358783 1.0000 80 chrI:6280533-6280613 1.0000 80 chrIII:10670154-10670234 1.0000 80 chrIV:13778432-13778512 1.0000 80 chrIII:369045-369125 1.0000 80 chrI:4745377-4745457 1.0000 80 chrX:5113305-5113385 1.0000 80 chrI:4320833-4320913 1.0000 80 chrX:6953485-6953565 1.0000 80 chrI:9447392-9447472 1.0000 80 chrII:9960102-9960182 1.0000 80 chrIII:11267486-11267566 1.0000 80 chrI:6279152-6279232 1.0000 80 chrIII:5720675-5720755 1.0000 80 chrI:2970830-2970910 1.0000 80 chrV:14806408-14806488 1.0000 80 chrI:7711750-7711830 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/worm/inference_raw/MEME/RankLinear2.0_40_ref-2/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/worm/fasta/RankLinear2.0_40/ref-2.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.25 C 0.255 G 0.246 T 0.249 Background letter frequencies (from file dataset with add-one prior applied): A 0.25 C 0.255 G 0.246 T 0.249 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF RRGAGAVA MEME-1 width = 8 sites = 57 llr = 442 E-value = 2.3e-010 ******************************************************************************** -------------------------------------------------------------------------------- Motif RRGAGAVA MEME-1 Description -------------------------------------------------------------------------------- Simplified A 53:a:a57 pos.-specific C ::::::2: probability G 55a:a:33 matrix T :2:::::: bits 2.0 **** 1.8 **** 1.6 **** 1.4 **** Relative 1.2 **** * Entropy 1.0 * **** * (11.2 bits) 0.8 * **** * 0.6 ****** * 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GGGAGAAA consensus AA GG sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RRGAGAVA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:11036500-11036580 59 1.43e-05 TGATCCATGT GGGAGAAA GTTTTGCATT chrI:5214872-5214952 69 1.43e-05 GCCGTTCTTG GGGAGAAA TTAG chrI:9447392-9447472 22 2.88e-05 TAGAATTTAG AGGAGAAA AGAGTCATAG chrIV:13778432-13778512 51 2.88e-05 TTGCTGCCGG AGGAGAAA TCATCACCCT chrI:7158978-7159058 42 2.88e-05 AAGATGAGCG AGGAGAAA GAGAGCGACT chrX:7460608-7460688 16 2.88e-05 TAGAAAAGAC AGGAGAAA GAAGAAGGGA chrX:6066706-6066786 6 2.88e-05 ATATA AGGAGAAA CGATGAACAT chrI:7711750-7711830 25 4.29e-05 TGGTTGGAAA GGGAGAGA AGAAGGAACA chrV:14806408-14806488 40 4.29e-05 gggaaataga gggagaga gagagagaga chrX:5338093-5338173 66 4.29e-05 GCGGATCGAC GGGAGAGA GAAAGGG chrII:14248237-14248317 14 4.29e-05 GAGGAAAAAG GGGAGAGA ACGACACTGC chrI:11062926-11063006 61 4.29e-05 ATTGGAAAAA GGGAGAGA GTACAGAGCG chrV:6679885-6679965 36 4.29e-05 AACAGATAGA GGGAGAGA GAAAGCTGAG chrIV:5561751-5561831 52 7.18e-05 AGAGAAAAAA GAGAGAAA TGGGCGGAGC chrIV:5078103-5078183 33 7.18e-05 CAAGGTCTCA AGGAGAGA GGGAAGGGGT chrI:11779202-11779282 20 7.18e-05 GGGGCAGAAA GAGAGAAA TGTCTGCGTC chrV:12539336-12539416 4 7.18e-05 GTG GAGAGAAA ATGTGTGTGT chrX:14486667-14486747 35 7.18e-05 TGTCGGCGGA GAGAGAAA GGTGCGTTCC chrII:937452-937532 16 7.18e-05 TCTGTCCTCT AGGAGAGA CCCCACTGAG chrI:5422369-5422449 47 1.01e-04 GATACGAGAA AAGAGAAA GAGACATAGG chrII:11535644-11535724 64 1.01e-04 CATTGTGCAT GGGAGACA CATCGTCTG chrV:4029850-4029930 66 1.01e-04 GGAAGAAGGG GGGAGACA ACCGCAC chrX:1120424-1120504 43 1.30e-04 gagacagaca gagagaga tggagagGTT chrI:9116201-9116281 28 1.30e-04 GGCGAAGAGT GAGAGAGA GGCGGGGAGT chrX:9941560-9941640 44 1.30e-04 AGACAGTTGA GGGAGAAG AGGTAAGGAG chrII:9960102-9960182 7 1.59e-04 TACCCC GTGAGAAA AGTGCAAGGA chrX:6953485-6953565 72 1.59e-04 AGGGGAAACA GTGAGAAA A chrIV:4702253-4702333 50 1.59e-04 CGTGCGTTGC GTGAGAAA AATTGCGTTT chrV:11701319-11701399 53 1.59e-04 AACACTTGTA AGGAGACA TGAGTGCAGG chrIV:7521736-7521816 33 1.59e-04 ACAACAAAAG AGGAGACA TGGATGGATT chrV:3450701-3450781 23 1.59e-04 GGTATAATTA GTGAGAAA ATTGAGAGGT chrX:7729453-7729533 13 1.88e-04 CGTGAGCTCA AGGAGAAG TTCCTCCGCG chrI:7267016-7267096 73 1.88e-04 TGGCACACAC AAGAGAGA chrI:1256081-1256161 46 1.88e-04 GGCGAGGAGG AGGAGAAG CAGCAGTGAG chrIII:6801127-6801207 48 1.88e-04 TGTTTTCTTG AGGAGAAG AAAAAGAAAA chrII:13456799-13456879 41 2.16e-04 CAGCTTTTGC GGGAGAGG GTGTTCTGAG chrIV:3352206-3352286 14 2.16e-04 CTTCTCAGTG ATGAGAAA ATGAAAACGA chrI:7194979-7195059 25 2.16e-04 GACGATGATC GGGAGAGG TCACGCCCAC chrV:16042372-16042452 13 2.45e-04 GTGGGCAAAA GTGAGAGA GTGCAAGGAT chrII:9491170-9491250 27 2.45e-04 gtagtgatga gtgagaga tgaataatgg chrX:2776452-2776532 20 2.45e-04 TAATGTTTAC GTGAGAGA CGCCTGGAGA chrII:9313433-9313513 65 2.45e-04 GGTGAGTATT GAGAGACA GAGATAGG chrIII:12894348-12894428 44 2.45e-04 GGAGGGCCCA GAGAGACA AGACAAGGAG chrV:6541901-6541981 56 2.74e-04 CGATGATGAC AGGAGAGG CGAGAATCCT chrII:7358703-7358783 52 3.03e-04 CATTGACAAG AAGAGACA CACTTCTTAC chrII:4098898-4098978 17 3.03e-04 GACCGTTCAG AAGAGACA GTTGTGAGTG chrIV:3279012-3279092 26 3.32e-04 AACATTACGT AAGAGAAG CAACCTCCTG chrII:8751200-8751280 71 3.32e-04 GTCGAAGAAA AAGAGAAG GG chrIV:4588608-4588688 29 3.32e-04 GTGTAGGGAA AAGAGAAG AGGCCGCGCG chrIV:9267777-9267857 22 3.32e-04 GAGTGCGCCC GGGAGACG TCGATTGGGG chrIII:4010351-4010431 21 3.90e-04 CAATCGGTGT AGGAGACG CAGAGATGTT chrV:20764788-20764868 56 3.90e-04 CATTTTTCCA GTGAGAAG GTGCTATAAT chrI:4032600-4032680 29 4.19e-04 CGCTGGTCAT ATGAGACA GTGCTAGTGT chrV:14792400-14792480 1 4.19e-04 . AAGAGAGG CGAACACAGA chrIV:10867866-10867946 62 4.34e-04 TGCCTAATTC ATGAGAAG CTGATCCAGC chrIII:9112634-9112714 13 4.62e-04 GGGAGATGCG GAGAGACG AGCGTAGGGT chrIV:4070984-4071064 69 4.91e-04 CCTAGCGGAA AAGAGACG GAGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RRGAGAVA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:11036500-11036580 1.4e-05 58_[+1]_14 chrI:5214872-5214952 1.4e-05 68_[+1]_4 chrI:9447392-9447472 2.9e-05 21_[+1]_51 chrIV:13778432-13778512 2.9e-05 50_[+1]_22 chrI:7158978-7159058 2.9e-05 41_[+1]_31 chrX:7460608-7460688 2.9e-05 15_[+1]_57 chrX:6066706-6066786 2.9e-05 5_[+1]_67 chrI:7711750-7711830 4.3e-05 24_[+1]_48 chrV:14806408-14806488 4.3e-05 39_[+1]_33 chrX:5338093-5338173 4.3e-05 65_[+1]_7 chrII:14248237-14248317 4.3e-05 13_[+1]_59 chrI:11062926-11063006 4.3e-05 60_[+1]_12 chrV:6679885-6679965 4.3e-05 35_[+1]_37 chrIV:5561751-5561831 7.2e-05 51_[+1]_21 chrIV:5078103-5078183 7.2e-05 32_[+1]_40 chrI:11779202-11779282 7.2e-05 19_[+1]_53 chrV:12539336-12539416 7.2e-05 3_[+1]_69 chrX:14486667-14486747 7.2e-05 34_[+1]_38 chrII:937452-937532 7.2e-05 15_[+1]_57 chrI:5422369-5422449 0.0001 46_[+1]_26 chrII:11535644-11535724 0.0001 63_[+1]_9 chrV:4029850-4029930 0.0001 65_[+1]_7 chrX:1120424-1120504 0.00013 42_[+1]_30 chrI:9116201-9116281 0.00013 27_[+1]_45 chrX:9941560-9941640 0.00013 43_[+1]_29 chrII:9960102-9960182 0.00016 6_[+1]_66 chrX:6953485-6953565 0.00016 71_[+1]_1 chrIV:4702253-4702333 0.00016 49_[+1]_23 chrV:11701319-11701399 0.00016 52_[+1]_20 chrIV:7521736-7521816 0.00016 32_[+1]_40 chrV:3450701-3450781 0.00016 22_[+1]_50 chrX:7729453-7729533 0.00019 12_[+1]_60 chrI:7267016-7267096 0.00019 72_[+1] chrI:1256081-1256161 0.00019 45_[+1]_27 chrIII:6801127-6801207 0.00019 47_[+1]_25 chrII:13456799-13456879 0.00022 40_[+1]_32 chrIV:3352206-3352286 0.00022 13_[+1]_59 chrI:7194979-7195059 0.00022 24_[+1]_48 chrV:16042372-16042452 0.00025 12_[+1]_60 chrII:9491170-9491250 0.00025 26_[+1]_46 chrX:2776452-2776532 0.00025 19_[+1]_53 chrII:9313433-9313513 0.00025 64_[+1]_8 chrIII:12894348-12894428 0.00025 43_[+1]_29 chrV:6541901-6541981 0.00027 55_[+1]_17 chrII:7358703-7358783 0.0003 51_[+1]_21 chrII:4098898-4098978 0.0003 16_[+1]_56 chrIV:3279012-3279092 0.00033 25_[+1]_47 chrII:8751200-8751280 0.00033 70_[+1]_2 chrIV:4588608-4588688 0.00033 28_[+1]_44 chrIV:9267777-9267857 0.00033 21_[+1]_51 chrIII:4010351-4010431 0.00039 20_[+1]_52 chrV:20764788-20764868 0.00039 55_[+1]_17 chrI:4032600-4032680 0.00042 28_[+1]_44 chrV:14792400-14792480 0.00042 [+1]_72 chrIV:10867866-10867946 0.00043 61_[+1]_11 chrIII:9112634-9112714 0.00046 12_[+1]_60 chrIV:4070984-4071064 0.00049 68_[+1]_4 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RRGAGAVA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RRGAGAVA width=8 seqs=57 chrX:11036500-11036580 ( 59) GGGAGAAA 1 chrI:5214872-5214952 ( 69) GGGAGAAA 1 chrI:9447392-9447472 ( 22) AGGAGAAA 1 chrIV:13778432-13778512 ( 51) AGGAGAAA 1 chrI:7158978-7159058 ( 42) AGGAGAAA 1 chrX:7460608-7460688 ( 16) AGGAGAAA 1 chrX:6066706-6066786 ( 6) AGGAGAAA 1 chrI:7711750-7711830 ( 25) GGGAGAGA 1 chrV:14806408-14806488 ( 40) GGGAGAGA 1 chrX:5338093-5338173 ( 66) GGGAGAGA 1 chrII:14248237-14248317 ( 14) GGGAGAGA 1 chrI:11062926-11063006 ( 61) GGGAGAGA 1 chrV:6679885-6679965 ( 36) GGGAGAGA 1 chrIV:5561751-5561831 ( 52) GAGAGAAA 1 chrIV:5078103-5078183 ( 33) AGGAGAGA 1 chrI:11779202-11779282 ( 20) GAGAGAAA 1 chrV:12539336-12539416 ( 4) GAGAGAAA 1 chrX:14486667-14486747 ( 35) GAGAGAAA 1 chrII:937452-937532 ( 16) AGGAGAGA 1 chrI:5422369-5422449 ( 47) AAGAGAAA 1 chrII:11535644-11535724 ( 64) GGGAGACA 1 chrV:4029850-4029930 ( 66) GGGAGACA 1 chrX:1120424-1120504 ( 43) GAGAGAGA 1 chrI:9116201-9116281 ( 28) GAGAGAGA 1 chrX:9941560-9941640 ( 44) GGGAGAAG 1 chrII:9960102-9960182 ( 7) GTGAGAAA 1 chrX:6953485-6953565 ( 72) GTGAGAAA 1 chrIV:4702253-4702333 ( 50) GTGAGAAA 1 chrV:11701319-11701399 ( 53) AGGAGACA 1 chrIV:7521736-7521816 ( 33) AGGAGACA 1 chrV:3450701-3450781 ( 23) GTGAGAAA 1 chrX:7729453-7729533 ( 13) AGGAGAAG 1 chrI:7267016-7267096 ( 73) AAGAGAGA 1 chrI:1256081-1256161 ( 46) AGGAGAAG 1 chrIII:6801127-6801207 ( 48) AGGAGAAG 1 chrII:13456799-13456879 ( 41) GGGAGAGG 1 chrIV:3352206-3352286 ( 14) ATGAGAAA 1 chrI:7194979-7195059 ( 25) GGGAGAGG 1 chrV:16042372-16042452 ( 13) GTGAGAGA 1 chrII:9491170-9491250 ( 27) GTGAGAGA 1 chrX:2776452-2776532 ( 20) GTGAGAGA 1 chrII:9313433-9313513 ( 65) GAGAGACA 1 chrIII:12894348-12894428 ( 44) GAGAGACA 1 chrV:6541901-6541981 ( 56) AGGAGAGG 1 chrII:7358703-7358783 ( 52) AAGAGACA 1 chrII:4098898-4098978 ( 17) AAGAGACA 1 chrIV:3279012-3279092 ( 26) AAGAGAAG 1 chrII:8751200-8751280 ( 71) AAGAGAAG 1 chrIV:4588608-4588688 ( 29) AAGAGAAG 1 chrIV:9267777-9267857 ( 22) GGGAGACG 1 chrIII:4010351-4010431 ( 21) AGGAGACG 1 chrV:20764788-20764868 ( 56) GTGAGAAG 1 chrI:4032600-4032680 ( 29) ATGAGACA 1 chrV:14792400-14792480 ( 1) AAGAGAGG 1 chrIV:10867866-10867946 ( 62) ATGAGAAG 1 chrIII:9112634-9112714 ( 13) GAGAGACG 1 chrIV:4070984-4071064 ( 69) AAGAGACG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RRGAGAVA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.2866 E= 2.3e-010 87 -1248 114 -1248 33 -1248 100 -37 -1248 -1248 202 -1248 200 -1248 -1248 -1248 -1248 -1248 202 -1248 200 -1248 -1248 -1248 87 -16 36 -1248 149 -1248 28 -1248 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RRGAGAVA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 57 E= 2.3e-010 0.456140 0.000000 0.543860 0.000000 0.315789 0.000000 0.491228 0.192982 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.456140 0.228070 0.315789 0.000000 0.701754 0.000000 0.298246 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RRGAGAVA MEME-1 regular expression -------------------------------------------------------------------------------- [GA][GA]GAGA[AGC][AG] -------------------------------------------------------------------------------- Time 9.68 secs. ******************************************************************************** ******************************************************************************** MOTIF CTCTCTCT MEME-2 width = 8 sites = 36 llr = 296 E-value = 1.5e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTCTCTCT MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C 817:9:a1 probability G 2::::::2 matrix T :93a1a:8 bits 2.0 * * 1.8 * ** 1.6 * ** 1.4 * **** Relative 1.2 ******* Entropy 1.0 ******* (11.9 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CTCTCTCT consensus G T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCTCTCT MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrV:6541901-6541981 72 1.63e-05 GGCGAGAATC CTCTCTCT C chrIII:9742159-9742239 58 1.63e-05 TCATCTGATG CTCTCTCT CGATCCTCTT chrI:1559212-1559292 70 1.63e-05 gaatctcttt ctctctct cac chrV:11673998-11674078 26 1.63e-05 TTCCTAGTCA CTCTCTCT CATTAGAATA chrX:857856-857936 29 1.63e-05 CAAGGAGTCC CTCTCTCT CCGGGTGGGA chrV:3218785-3218865 12 1.63e-05 CGCGTGGGGT CTCTCTCT CTGTTCTTCG chrIV:1901165-1901245 25 1.63e-05 tcacttctct ctctctct ctACTGGATC chrI:7194979-7195059 49 1.63e-05 CCACAACCAT CTCTCTCT ACCTCCTGCA chrIV:742056-742136 37 1.63e-05 tctgatctct ctctctct cttcctctTT chrX:14581649-14581729 19 3.21e-05 CTTTACGCTC CTTTCTCT CCTCCCCCTT chrIV:12396977-12397057 18 3.21e-05 ATAGACATCT CTTTCTCT GCCAAATCCA chrII:6441215-6441295 13 4.78e-05 CCCAGAATCC GTCTCTCT TCCGAAAACG chrII:7679661-7679741 24 4.78e-05 GACGTGTGAT GTCTCTCT ATTCGCCACA chrI:3332768-3332848 27 4.78e-05 gtgtgtgtgt gtctctct gtTTCGATTG chrI:2970830-2970910 29 6.39e-05 TTGTAGCCCC CTCTCTCG TCCATTGTGT chrIII:4128625-4128705 17 6.39e-05 AAACGGCAAT CTCTCTCG ATCAACTCTA chrII:9313433-9313513 22 6.39e-05 TTTCACCAAT CTCTCTCG TTTCCTAATT chrX:15347831-15347911 32 6.39e-05 AACCGAGGCG CTCTCTCG GCGTTCCATT chrII:9960102-9960182 41 9.64e-05 ATGCTCCGCC CTCTTTCT TCTCAACCAA chrII:9574573-9574653 70 9.64e-05 AATTGAGTCC CCCTCTCT ACC chrIV:17099296-17099376 29 9.64e-05 GCTTCCAGTT CTCTTTCT CGCGATTCTC chrV:14508174-14508254 59 9.64e-05 ACCTCCTCAA CCCTCTCT TAATCTTCAG chrII:873177-873257 21 1.12e-04 CAATTTCCCT GTTTCTCT GCGTCTATGT chrV:9422900-9422980 33 1.12e-04 TGGTATCTCT GTTTCTCT AAATTCTCTC chrI:4320833-4320913 40 1.44e-04 ACACATAGTA CTCTCTCC CCTTCTTATT chrIII:11267486-11267566 28 1.76e-04 ctcttctctg ccttctct tcgtctctcc chrX:1575235-1575315 5 1.76e-04 ATGC CTTTTTCT CTCATCCATA chrV:1570838-1570918 55 1.76e-04 GGGAGGTCAT CTTTTTCT GCACAGACAG chrX:7749518-7749598 52 1.76e-04 TTTAATGTTC CTTTTTCT CCGAAGCCTC chrIII:3876267-3876347 9 1.76e-04 TAATCCTA CCTTCTCT GCGGGATGCC chrI:2831531-2831611 41 1.91e-04 ATTTCTCTGC GTCTCTCG CTTTCATCGC chrI:4684546-4684626 27 1.91e-04 AAGTGGGCGT GTCTCTCG AGACACTGTA chrX:2330693-2330773 16 2.23e-04 TCGTCACCTC GCCTCTCT TGCCCTATGG chrII:937452-937532 64 2.39e-04 CCTCTCTAGG CTCTCTCA GCCCCTCGC chrX:12494675-12494755 70 3.03e-04 ATTTATTGTG CTCTCTTT TAG chrIV:11717287-11717367 65 3.03e-04 CATTTTGCAT CTTTCTCC TTCCGTTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCTCTCT MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:6541901-6541981 1.6e-05 71_[+2]_1 chrIII:9742159-9742239 1.6e-05 57_[+2]_15 chrI:1559212-1559292 1.6e-05 69_[+2]_3 chrV:11673998-11674078 1.6e-05 25_[+2]_47 chrX:857856-857936 1.6e-05 28_[+2]_44 chrV:3218785-3218865 1.6e-05 11_[+2]_61 chrIV:1901165-1901245 1.6e-05 24_[+2]_48 chrI:7194979-7195059 1.6e-05 48_[+2]_24 chrIV:742056-742136 1.6e-05 36_[+2]_36 chrX:14581649-14581729 3.2e-05 18_[+2]_54 chrIV:12396977-12397057 3.2e-05 17_[+2]_55 chrII:6441215-6441295 4.8e-05 12_[+2]_60 chrII:7679661-7679741 4.8e-05 23_[+2]_49 chrI:3332768-3332848 4.8e-05 26_[+2]_46 chrI:2970830-2970910 6.4e-05 28_[+2]_44 chrIII:4128625-4128705 6.4e-05 16_[+2]_56 chrII:9313433-9313513 6.4e-05 21_[+2]_51 chrX:15347831-15347911 6.4e-05 31_[+2]_41 chrII:9960102-9960182 9.6e-05 40_[+2]_32 chrII:9574573-9574653 9.6e-05 69_[+2]_3 chrIV:17099296-17099376 9.6e-05 28_[+2]_44 chrV:14508174-14508254 9.6e-05 58_[+2]_14 chrII:873177-873257 0.00011 20_[+2]_52 chrV:9422900-9422980 0.00011 32_[+2]_40 chrI:4320833-4320913 0.00014 39_[+2]_33 chrIII:11267486-11267566 0.00018 27_[+2]_45 chrX:1575235-1575315 0.00018 4_[+2]_68 chrV:1570838-1570918 0.00018 54_[+2]_18 chrX:7749518-7749598 0.00018 51_[+2]_21 chrIII:3876267-3876347 0.00018 8_[+2]_64 chrI:2831531-2831611 0.00019 40_[+2]_32 chrI:4684546-4684626 0.00019 26_[+2]_46 chrX:2330693-2330773 0.00022 15_[+2]_57 chrII:937452-937532 0.00024 63_[+2]_9 chrX:12494675-12494755 0.0003 69_[+2]_3 chrIV:11717287-11717367 0.0003 64_[+2]_8 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCTCTCT MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTCTCTCT width=8 seqs=36 chrV:6541901-6541981 ( 72) CTCTCTCT 1 chrIII:9742159-9742239 ( 58) CTCTCTCT 1 chrI:1559212-1559292 ( 70) CTCTCTCT 1 chrV:11673998-11674078 ( 26) CTCTCTCT 1 chrX:857856-857936 ( 29) CTCTCTCT 1 chrV:3218785-3218865 ( 12) CTCTCTCT 1 chrIV:1901165-1901245 ( 25) CTCTCTCT 1 chrI:7194979-7195059 ( 49) CTCTCTCT 1 chrIV:742056-742136 ( 37) CTCTCTCT 1 chrX:14581649-14581729 ( 19) CTTTCTCT 1 chrIV:12396977-12397057 ( 18) CTTTCTCT 1 chrII:6441215-6441295 ( 13) GTCTCTCT 1 chrII:7679661-7679741 ( 24) GTCTCTCT 1 chrI:3332768-3332848 ( 27) GTCTCTCT 1 chrI:2970830-2970910 ( 29) CTCTCTCG 1 chrIII:4128625-4128705 ( 17) CTCTCTCG 1 chrII:9313433-9313513 ( 22) CTCTCTCG 1 chrX:15347831-15347911 ( 32) CTCTCTCG 1 chrII:9960102-9960182 ( 41) CTCTTTCT 1 chrII:9574573-9574653 ( 70) CCCTCTCT 1 chrIV:17099296-17099376 ( 29) CTCTTTCT 1 chrV:14508174-14508254 ( 59) CCCTCTCT 1 chrII:873177-873257 ( 21) GTTTCTCT 1 chrV:9422900-9422980 ( 33) GTTTCTCT 1 chrI:4320833-4320913 ( 40) CTCTCTCC 1 chrIII:11267486-11267566 ( 28) CCTTCTCT 1 chrX:1575235-1575315 ( 5) CTTTTTCT 1 chrV:1570838-1570918 ( 55) CTTTTTCT 1 chrX:7749518-7749598 ( 52) CTTTTTCT 1 chrIII:3876267-3876347 ( 9) CCTTCTCT 1 chrI:2831531-2831611 ( 41) GTCTCTCG 1 chrI:4684546-4684626 ( 27) GTCTCTCG 1 chrX:2330693-2330773 ( 16) GCCTCTCT 1 chrII:937452-937532 ( 64) CTCTCTCA 1 chrX:12494675-12494755 ( 70) CTCTCTTT 1 chrIV:11717287-11717367 ( 65) CTTTCTCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCTCTCT MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.389 E= 1.5e-001 -1181 161 -15 -1181 -1181 -88 -1181 179 -1181 150 -1181 16 -1181 -1181 -1181 201 -1181 176 -1181 -84 -1181 -1181 -1181 201 -1181 193 -1181 -316 -317 -220 -56 159 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCTCTCT MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 36 E= 1.5e-001 0.000000 0.777778 0.222222 0.000000 0.000000 0.138889 0.000000 0.861111 0.000000 0.722222 0.000000 0.277778 0.000000 0.000000 0.000000 1.000000 0.000000 0.861111 0.000000 0.138889 0.000000 0.000000 0.000000 1.000000 0.000000 0.972222 0.000000 0.027778 0.027778 0.055556 0.166667 0.750000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCTCTCT MEME-2 regular expression -------------------------------------------------------------------------------- [CG]T[CT]TCTCT -------------------------------------------------------------------------------- Time 14.83 secs. ******************************************************************************** ******************************************************************************** MOTIF YTCYTCTY MEME-3 width = 8 sites = 32 llr = 262 E-value = 1.1e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif YTCYTCTY MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C 61a42a:6 probability G :::::::: matrix T 49:68:a4 bits 2.0 * ** 1.8 * ** 1.6 ** ** 1.4 ** ** Relative 1.2 ** *** Entropy 1.0 ******** (11.8 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CTCTTCTC consensus T CC T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTCYTCTY MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIII:11267486-11267566 18 1.63e-05 CTTATCGCCA ctcttctc tgccttctct chrX:11384848-11384928 38 1.63e-05 TCCCGCTCTT CTCTTCTC ATGGCCTGTG chrIV:3352206-3352286 2 1.63e-05 T CTCTTCTC AGTGATGAGA chrII:9263165-9263245 67 1.63e-05 AGAGAGATGC CTCTTCTC TTTTTA chrII:15008557-15008637 9 3.21e-05 TGCGTTGT TTCTTCTC GGATTCCACC chrI:6279152-6279232 36 6.46e-05 AACACCTTtt ctcctctc atttttcatc chrI:1559212-1559292 46 6.46e-05 GACACACAct ctcttctt ctctctgaat chrV:156201-156281 68 6.46e-05 CGACCGTGTA CTCCTCTC GGACA chrX:6066706-6066786 29 6.46e-05 AACATTTTGT CTCTTCTT GGCGATTTAG chrIV:1901165-1901245 50 6.46e-05 ATCTTCAGAC CTCCTCTC CGGGCTGAGA chrI:8384723-8384803 72 6.46e-05 TCTATTTGtc ctcttctt c chrIV:17099296-17099376 61 6.46e-05 CCCGTGGTGT CTCCTCTC CTCAATATCT chrV:14508174-14508254 7 6.46e-05 TCTTGT CTCCTCTC CACTCCGCGA chrIV:11984027-11984107 6 9.64e-05 AGCCA TTCTTCTT GGTTTGGCAA chrX:2498015-2498095 36 9.64e-05 ACCTCCTCTA TTCTTCTT TCAACAAACC chrI:14808481-14808561 16 9.64e-05 CCTTCTCAAT TTCCTCTC TGGCATATGG chrIII:5940105-5940185 55 9.64e-05 CTCTAGAATG TTCTTCTT GTGCAGAAAG chrX:10990640-10990720 52 9.64e-05 GGCCTTTTCG TTCCTCTC GGATGCATTG chrIII:9646640-9646720 38 9.64e-05 TATCCGCGAC TTCTTCTT CTTCTAAGTT chrIV:5978171-5978251 22 1.13e-04 CGTGGGGAGA CTCCTCTT CATTTGGCAG chrV:3218785-3218865 31 1.13e-04 TGTTCTTCGC CTCCTCTT CGTTTCCCTA chrV:11673998-11674078 51 1.29e-04 ATAACGGTCG CTCTCCTC TGACCTTCTT chrIV:3521078-3521158 46 1.45e-04 CGATACTTGT TTCCTCTT ACGAGTTGTA chrIV:742056-742136 46 1.45e-04 tctctctctc ttcctctT TTCATGCTGC chrI:9440410-9440490 27 1.61e-04 TGCTGCCACC TTCTCCTC GATTCTCCAT chrIV:1897763-1897843 64 1.61e-04 CCAGCCTCCA TTCTCCTC CAATTTCCA chrX:1120424-1120504 64 1.95e-04 agagGTTGAC CTCTCCTT GCGAGTGAC chrX:17330582-17330662 34 1.95e-04 CTAATACCCC CTCCCCTC CGGTTACTTT chrI:636796-636876 19 2.27e-04 TGGCCTAGCG TTCCCCTC CTAGTCCACG chrX:2802633-2802713 22 2.61e-04 GTGTCTTGCG CCCTTCTC GTTTGTATTG chrI:6280533-6280613 19 2.93e-04 GGAGAAGAGG TCCTTCTC ATAGCAATGT chrI:7715696-7715776 13 3.93e-04 CATATGCCAA CCCTCCTC CCACAAGCAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTCYTCTY MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:11267486-11267566 1.6e-05 17_[+3]_55 chrX:11384848-11384928 1.6e-05 37_[+3]_35 chrIV:3352206-3352286 1.6e-05 1_[+3]_71 chrII:9263165-9263245 1.6e-05 66_[+3]_6 chrII:15008557-15008637 3.2e-05 8_[+3]_64 chrI:6279152-6279232 6.5e-05 35_[+3]_37 chrI:1559212-1559292 6.5e-05 45_[+3]_27 chrV:156201-156281 6.5e-05 67_[+3]_5 chrX:6066706-6066786 6.5e-05 28_[+3]_44 chrIV:1901165-1901245 6.5e-05 49_[+3]_23 chrI:8384723-8384803 6.5e-05 71_[+3]_1 chrIV:17099296-17099376 6.5e-05 60_[+3]_12 chrV:14508174-14508254 6.5e-05 6_[+3]_66 chrIV:11984027-11984107 9.6e-05 5_[+3]_67 chrX:2498015-2498095 9.6e-05 35_[+3]_37 chrI:14808481-14808561 9.6e-05 15_[+3]_57 chrIII:5940105-5940185 9.6e-05 54_[+3]_18 chrX:10990640-10990720 9.6e-05 51_[+3]_21 chrIII:9646640-9646720 9.6e-05 37_[+3]_35 chrIV:5978171-5978251 0.00011 21_[+3]_51 chrV:3218785-3218865 0.00011 30_[+3]_42 chrV:11673998-11674078 0.00013 50_[+3]_22 chrIV:3521078-3521158 0.00015 45_[+3]_27 chrIV:742056-742136 0.00015 45_[+3]_27 chrI:9440410-9440490 0.00016 26_[+3]_46 chrIV:1897763-1897843 0.00016 63_[+3]_9 chrX:1120424-1120504 0.00019 63_[+3]_9 chrX:17330582-17330662 0.00019 33_[+3]_39 chrI:636796-636876 0.00023 18_[+3]_54 chrX:2802633-2802713 0.00026 21_[+3]_51 chrI:6280533-6280613 0.00029 18_[+3]_54 chrI:7715696-7715776 0.00039 12_[+3]_60 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTCYTCTY MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF YTCYTCTY width=8 seqs=32 chrIII:11267486-11267566 ( 18) CTCTTCTC 1 chrX:11384848-11384928 ( 38) CTCTTCTC 1 chrIV:3352206-3352286 ( 2) CTCTTCTC 1 chrII:9263165-9263245 ( 67) CTCTTCTC 1 chrII:15008557-15008637 ( 9) TTCTTCTC 1 chrI:6279152-6279232 ( 36) CTCCTCTC 1 chrI:1559212-1559292 ( 46) CTCTTCTT 1 chrV:156201-156281 ( 68) CTCCTCTC 1 chrX:6066706-6066786 ( 29) CTCTTCTT 1 chrIV:1901165-1901245 ( 50) CTCCTCTC 1 chrI:8384723-8384803 ( 72) CTCTTCTT 1 chrIV:17099296-17099376 ( 61) CTCCTCTC 1 chrV:14508174-14508254 ( 7) CTCCTCTC 1 chrIV:11984027-11984107 ( 6) TTCTTCTT 1 chrX:2498015-2498095 ( 36) TTCTTCTT 1 chrI:14808481-14808561 ( 16) TTCCTCTC 1 chrIII:5940105-5940185 ( 55) TTCTTCTT 1 chrX:10990640-10990720 ( 52) TTCCTCTC 1 chrIII:9646640-9646720 ( 38) TTCTTCTT 1 chrIV:5978171-5978251 ( 22) CTCCTCTT 1 chrV:3218785-3218865 ( 31) CTCCTCTT 1 chrV:11673998-11674078 ( 51) CTCTCCTC 1 chrIV:3521078-3521158 ( 46) TTCCTCTT 1 chrIV:742056-742136 ( 46) TTCCTCTT 1 chrI:9440410-9440490 ( 27) TTCTCCTC 1 chrIV:1897763-1897843 ( 64) TTCTCCTC 1 chrX:1120424-1120504 ( 64) CTCTCCTT 1 chrX:17330582-17330662 ( 34) CTCCCCTC 1 chrI:636796-636876 ( 19) TTCCCCTC 1 chrX:2802633-2802713 ( 22) CCCTTCTC 1 chrI:6280533-6280613 ( 19) TCCTTCTC 1 chrI:7715696-7715776 ( 13) CCCTCCTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTCYTCTY MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.89106 E= 1.1e+004 -1164 122 -1164 71 -1164 -144 -1164 187 -1164 197 -1164 -1164 -1164 67 -1164 126 -1164 -22 -1164 165 -1164 197 -1164 -1164 -1164 -1164 -1164 201 -1164 129 -1164 59 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTCYTCTY MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 32 E= 1.1e+004 0.000000 0.593750 0.000000 0.406250 0.000000 0.093750 0.000000 0.906250 0.000000 1.000000 0.000000 0.000000 0.000000 0.406250 0.000000 0.593750 0.000000 0.218750 0.000000 0.781250 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.625000 0.000000 0.375000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTCYTCTY MEME-3 regular expression -------------------------------------------------------------------------------- [CT]TC[TC][TC]CT[CT] -------------------------------------------------------------------------------- Time 18.40 secs. ******************************************************************************** ******************************************************************************** MOTIF GCGGGRGG MEME-4 width = 8 sites = 7 llr = 73 E-value = 4.1e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCGGGRGG MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::::4:: pos.-specific C :a:::::: probability G a:aaa6aa matrix T :::::::: bits 2.0 ***** ** 1.8 ***** ** 1.6 ***** ** 1.4 ***** ** Relative 1.2 ***** ** Entropy 1.0 ******** (15.1 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GCGGGGGG consensus A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGGGRGG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrI:9447392-9447472 44 1.39e-05 TCATAGTTGC GCGGGGGG CCAAAGACGG chrII:6712490-6712570 56 1.39e-05 TTCAAAGTGA GCGGGGGG CATAGGGTGG chrIV:3826847-3826927 1 1.39e-05 . GCGGGGGG AAGAAGGAAG chrIII:1430228-1430308 37 1.39e-05 GGCTGCCTCA GCGGGGGG CCCTATGAGA chrI:7217483-7217563 2 2.80e-05 G GCGGGAGG CATACCGTAC chrX:8384833-8384913 26 2.80e-05 GAGCGTGGGT GCGGGAGG CGACAGAATA chrV:6105504-6105584 72 2.80e-05 GACCCCTTTT GCGGGAGG G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGGGRGG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:9447392-9447472 1.4e-05 43_[+4]_29 chrII:6712490-6712570 1.4e-05 55_[+4]_17 chrIV:3826847-3826927 1.4e-05 [+4]_72 chrIII:1430228-1430308 1.4e-05 36_[+4]_36 chrI:7217483-7217563 2.8e-05 1_[+4]_71 chrX:8384833-8384913 2.8e-05 25_[+4]_47 chrV:6105504-6105584 2.8e-05 71_[+4]_1 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGGGRGG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCGGGRGG width=8 seqs=7 chrI:9447392-9447472 ( 44) GCGGGGGG 1 chrII:6712490-6712570 ( 56) GCGGGGGG 1 chrIV:3826847-3826927 ( 1) GCGGGGGG 1 chrIII:1430228-1430308 ( 37) GCGGGGGG 1 chrI:7217483-7217563 ( 2) GCGGGAGG 1 chrX:8384833-8384913 ( 26) GCGGGAGG 1 chrV:6105504-6105584 ( 72) GCGGGAGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGGGRGG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.9536 E= 4.1e+004 -945 -945 202 -945 -945 197 -945 -945 -945 -945 202 -945 -945 -945 202 -945 -945 -945 202 -945 77 -945 121 -945 -945 -945 202 -945 -945 -945 202 -945 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGGGRGG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 4.1e+004 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.428571 0.000000 0.571429 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGGGRGG MEME-4 regular expression -------------------------------------------------------------------------------- GCGGG[GA]GG -------------------------------------------------------------------------------- Time 21.90 secs. ******************************************************************************** ******************************************************************************** MOTIF TGTGWVTK MEME-5 width = 8 sites = 21 llr = 184 E-value = 1.3e+005 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGTGWVTK MEME-5 Description -------------------------------------------------------------------------------- Simplified A ::::55:: pos.-specific C :::::3:: probability G :a:a:2:6 matrix T a:a:5:a4 bits 2.0 **** * 1.8 **** * 1.6 **** * 1.4 **** * Relative 1.2 **** * Entropy 1.0 ***** ** (12.6 bits) 0.8 ***** ** 0.6 ***** ** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TGTGTATG consensus AC T sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGWVTK MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrV:3150154-3150234 73 1.43e-05 agtagcttgg tgtgtatg chrX:2498015-2498095 65 1.43e-05 ATTCAATTTA TGTGTATG TACATTCA chrX:10596675-10596755 26 1.43e-05 TGCGTTTGCG TGTGTATG TTTGGTGGTA chrI:6151632-6151712 71 1.43e-05 ATATACTGTG TGTGTATG CG chrV:14432333-14432413 5 2.87e-05 TCGG TGTGAATG TTTTGGGTGT chrIII:9112634-9112714 69 2.87e-05 GAAAAAACAA TGTGAATG GCGG chrI:2970830-2970910 44 5.77e-05 TCGTCCATTG TGTGTATT TGCCGATGAT chrIV:5078103-5078183 59 5.77e-05 GTCGAAGATA TGTGTCTG CGTCTAAATG chrX:10206321-10206401 52 8.69e-05 CATGTTAAGG TGTGAATT GACACCTCTT chrIV:1687194-1687274 7 8.69e-05 AAAATT TGTGAATT TTTTTAGTAT chrX:11384848-11384928 52 8.69e-05 TCTCATGGCC TGTGACTG TCTGCCTGTC chrX:17464966-17465046 59 8.69e-05 AGCACGACGC TGTGACTG CAATCACATA chrII:10149296-10149376 9 8.69e-05 AAGAATGA TGTGAATT AGACAAGGGG chrV:12539336-12539416 13 1.01e-04 GGAGAGAAAA TGTGTGTG TCGTCTATCT chrI:3332768-3332848 16 1.01e-04 tgtatatatg tgtgtgtg tgtgtctctc chrIV:1897763-1897843 23 1.01e-04 AGCCAATGTG TGTGTGTG TCTTTTTTGA chrII:4098898-4098978 27 1.15e-04 AAGAGACAGT TGTGAGTG CGTGGCGCAA chrX:2802633-2802713 11 1.30e-04 TCCCGTCTCT TGTGTCTT GCGCCCTTCT chrIII:13305397-13305477 24 1.45e-04 TTGCCGCTGT TGTGACTT TCTTGCCTTC chrIII:11832556-11832636 65 1.45e-04 TAAAGATTAC TGTGACTT TCACCGAT chrV:6679885-6679965 7 1.59e-04 GCAAAT TGTGTGTT TGTTTGTAAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGWVTK MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:3150154-3150234 1.4e-05 72_[+5] chrX:2498015-2498095 1.4e-05 64_[+5]_8 chrX:10596675-10596755 1.4e-05 25_[+5]_47 chrI:6151632-6151712 1.4e-05 70_[+5]_2 chrV:14432333-14432413 2.9e-05 4_[+5]_68 chrIII:9112634-9112714 2.9e-05 68_[+5]_4 chrI:2970830-2970910 5.8e-05 43_[+5]_29 chrIV:5078103-5078183 5.8e-05 58_[+5]_14 chrX:10206321-10206401 8.7e-05 51_[+5]_21 chrIV:1687194-1687274 8.7e-05 6_[+5]_66 chrX:11384848-11384928 8.7e-05 51_[+5]_21 chrX:17464966-17465046 8.7e-05 58_[+5]_14 chrII:10149296-10149376 8.7e-05 8_[+5]_64 chrV:12539336-12539416 0.0001 12_[+5]_60 chrI:3332768-3332848 0.0001 15_[+5]_57 chrIV:1897763-1897843 0.0001 22_[+5]_50 chrII:4098898-4098978 0.00012 26_[+5]_46 chrX:2802633-2802713 0.00013 10_[+5]_62 chrIII:13305397-13305477 0.00014 23_[+5]_49 chrIII:11832556-11832636 0.00014 64_[+5]_8 chrV:6679885-6679965 0.00016 6_[+5]_66 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGWVTK MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGTGWVTK width=8 seqs=21 chrV:3150154-3150234 ( 73) TGTGTATG 1 chrX:2498015-2498095 ( 65) TGTGTATG 1 chrX:10596675-10596755 ( 26) TGTGTATG 1 chrI:6151632-6151712 ( 71) TGTGTATG 1 chrV:14432333-14432413 ( 5) TGTGAATG 1 chrIII:9112634-9112714 ( 69) TGTGAATG 1 chrI:2970830-2970910 ( 44) TGTGTATT 1 chrIV:5078103-5078183 ( 59) TGTGTCTG 1 chrX:10206321-10206401 ( 52) TGTGAATT 1 chrIV:1687194-1687274 ( 7) TGTGAATT 1 chrX:11384848-11384928 ( 52) TGTGACTG 1 chrX:17464966-17465046 ( 59) TGTGACTG 1 chrII:10149296-10149376 ( 9) TGTGAATT 1 chrV:12539336-12539416 ( 13) TGTGTGTG 1 chrI:3332768-3332848 ( 16) TGTGTGTG 1 chrIV:1897763-1897843 ( 23) TGTGTGTG 1 chrII:4098898-4098978 ( 27) TGTGAGTG 1 chrX:2802633-2802713 ( 11) TGTGTCTT 1 chrIII:13305397-13305477 ( 24) TGTGACTT 1 chrIII:11832556-11832636 ( 65) TGTGACTT 1 chrV:6679885-6679965 ( 7) TGTGTGTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGWVTK MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.7488 E= 1.3e+005 -1104 -1104 -1104 201 -1104 -1104 202 -1104 -1104 -1104 -1104 201 -1104 -1104 202 -1104 93 -1104 -1104 107 93 16 -5 -1104 -1104 -1104 -1104 201 -1104 -1104 133 62 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGWVTK MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 21 E= 1.3e+005 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.476190 0.000000 0.000000 0.523810 0.476190 0.285714 0.238095 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.619048 0.380952 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGWVTK MEME-5 regular expression -------------------------------------------------------------------------------- TGTG[TA][ACG]T[GT] -------------------------------------------------------------------------------- Time 25.39 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:7750265-7750345 2.24e-01 80 chrIII:6331865-6331945 4.53e-01 80 chrX:7745567-7745647 8.89e-01 80 chrV:3450701-3450781 7.08e-02 80 chrX:7723017-7723097 9.99e-01 80 chrX:7721786-7721866 2.52e-01 80 chrX:7456088-7456168 9.07e-01 80 chrII:937452-937532 7.80e-03 15_[+1(7.18e-05)]_57 chrIII:6476566-6476646 3.55e-02 80 chrX:3977451-3977531 5.56e-02 80 chrIV:9267777-9267857 3.19e-01 80 chrV:1244181-1244261 7.54e-01 80 chrX:7728023-7728103 1.30e-01 80 chrIV:16403415-16403495 6.90e-01 80 chrV:20764788-20764868 5.39e-02 80 chrIV:2142457-2142537 2.00e-01 45_[+4(5.65e-05)]_27 chrI:1731174-1731254 9.37e-01 80 chrV:6105504-6105584 5.04e-03 71_[+4(2.80e-05)]_1 chrI:14230091-14230171 2.43e-01 80 chrIV:7521736-7521816 1.24e-01 80 chrIII:3876267-3876347 2.91e-02 80 chrIII:4461534-4461614 1.94e-01 80 chrI:11679098-11679178 8.95e-01 80 chrII:11890806-11890886 8.23e-01 80 chrI:3937173-3937253 7.40e-01 80 chrX:4809385-4809465 1.02e-01 80 chrV:14508174-14508254 1.71e-02 6_[+3(6.46e-05)]_44_[+2(9.64e-05)]_\ 14 chrX:7749518-7749598 4.41e-02 80 chrII:4098898-4098978 1.96e-02 80 chrX:7747309-7747389 7.50e-01 80 chrII:8897410-8897490 8.00e-01 80 chrV:1570838-1570918 2.25e-02 80 chrV:14792400-14792480 5.35e-01 80 chrV:4029850-4029930 3.29e-02 80 chrX:9941560-9941640 2.02e-01 80 chrII:10149296-10149376 1.74e-01 8_[+5(8.69e-05)]_64 chrIV:742056-742136 1.06e-02 32_[+2(1.63e-05)]_40 chrX:14486667-14486747 1.64e-01 34_[+1(7.18e-05)]_38 chrV:9452637-9452717 4.44e-01 80 chrIV:17099296-17099376 7.99e-03 28_[+2(9.64e-05)]_24_[+3(6.46e-05)]_\ 12 chrX:14027086-14027166 2.68e-01 80 chrV:6545177-6545257 5.76e-01 80 chrI:11759980-11760060 5.08e-01 80 chrIII:9646640-9646720 5.28e-03 37_[+3(9.64e-05)]_35 chrIII:2234292-2234372 1.07e-01 80 chrIII:9767337-9767417 9.99e-01 80 chrIV:1897763-1897843 1.99e-03 80 chrX:3070437-3070517 4.55e-01 80 chrX:10990640-10990720 9.16e-02 51_[+3(9.64e-05)]_21 chrIII:6801127-6801207 4.74e-02 80 chrIII:7812381-7812461 2.79e-01 80 chrIV:4518264-4518344 9.85e-01 80 chrII:10820161-10820241 1.63e-01 80 chrIII:1430228-1430308 1.12e-02 36_[+4(1.39e-05)]_36 chrV:6354366-6354446 6.53e-01 80 chrX:12007885-12007965 5.51e-01 80 chrIII:9990314-9990394 9.36e-01 80 chrIII:11832556-11832636 1.27e-01 80 chrII:11789664-11789744 2.82e-01 80 chrI:3332768-3332848 5.82e-03 26_[+2(4.78e-05)]_46 chrI:6151632-6151712 4.07e-02 70_[+5(1.43e-05)]_2 chrX:8384833-8384913 3.70e-02 25_[+4(2.80e-05)]_47 chrII:9263165-9263245 8.33e-04 66_[+3(1.63e-05)]_6 chrX:1575235-1575315 1.11e-01 80 chrII:9063472-9063552 6.56e-01 80 chrIV:2824348-2824428 5.38e-01 80 chrI:4684546-4684626 3.97e-02 80 chrIV:3826847-3826927 6.11e-02 [+4(1.39e-05)]_72 chrI:8384723-8384803 8.31e-02 71_[+3(6.46e-05)]_1 chrIII:10336473-10336553 2.88e-01 80 chrX:17464966-17465046 1.77e-01 58_[+5(8.69e-05)]_14 chrI:7194979-7195059 4.06e-03 48_[+2(1.63e-05)]_24 chrX:15347831-15347911 2.93e-01 31_[+2(6.39e-05)]_41 chrIII:13713964-13714044 6.26e-01 80 chrII:15273088-15273168 6.50e-01 80 chrV:12539336-12539416 1.82e-03 3_[+1(7.18e-05)]_69 chrII:11535644-11535724 1.81e-02 80 chrX:15310395-15310475 3.67e-01 80 chrV:154010-154090 1.36e-01 80 chrI:11779202-11779282 5.18e-02 19_[+1(7.18e-05)]_53 chrIV:1901165-1901245 1.89e-03 20_[+2(1.63e-05)]_21_[+3(6.46e-05)]_\ 23 chrI:521406-521486 9.26e-01 80 chrIII:12894348-12894428 1.69e-01 80 chrV:20535884-20535964 9.02e-01 80 chrII:6712490-6712570 2.04e-02 55_[+4(1.39e-05)]_17 chrX:2330693-2330773 1.32e-01 80 chrI:10462710-10462790 1.00e+00 80 chrIV:11717287-11717367 3.70e-02 80 chrIV:4070984-4071064 4.08e-01 80 chrX:11578844-11578924 1.33e-01 80 chrII:9574573-9574653 5.42e-02 69_[+2(9.64e-05)]_3 chrII:7678686-7678766 3.16e-01 80 chrV:20839629-20839709 5.25e-01 80 chrV:3218785-3218865 5.30e-04 11_[+2(1.63e-05)]_61 chrI:7217483-7217563 8.43e-03 1_[+4(2.80e-05)]_71 chrIV:4588608-4588688 1.05e-01 80 chrX:7457570-7457650 4.09e-01 80 chrI:7709259-7709339 4.97e-01 80 chrI:9940915-9940995 1.28e-01 80 chrIV:10570238-10570318 1.63e-01 80 chrII:8204880-8204960 9.55e-01 80 chrI:4032600-4032680 6.60e-01 80 chrV:9422900-9422980 1.75e-01 80 chrI:5214872-5214952 3.40e-02 68_[+1(1.43e-05)]_4 chrIII:6013141-6013221 5.25e-01 80 chrIII:4455055-4455135 9.75e-01 80 chrIII:13779532-13779612 7.74e-01 80 chrIV:2891939-2892019 6.00e-01 80 chrI:1256081-1256161 1.51e-01 80 chrIV:5078103-5078183 9.12e-03 32_[+1(7.18e-05)]_18_[+5(5.77e-05)]_\ 14 chrI:4976323-4976403 6.21e-01 80 chrIV:1354037-1354117 7.01e-01 80 chrX:7726100-7726180 7.74e-01 80 chrI:4572027-4572107 1.00e+00 80 chrX:9089676-9089756 2.22e-01 80 chrIV:1854097-1854177 4.58e-01 80 chrII:9313433-9313513 1.81e-03 21_[+2(6.39e-05)]_51 chrIV:5978171-5978251 3.11e-02 80 chrX:5456923-5457003 5.84e-01 80 chrX:5698485-5698565 7.20e-01 80 chrX:11036500-11036580 7.90e-03 58_[+1(1.43e-05)]_14 chrX:6066706-6066786 3.56e-04 5_[+1(2.88e-05)]_15_[+3(6.46e-05)]_\ 44 chrI:7267016-7267096 3.98e-01 80 chrX:4551100-4551180 7.20e-01 80 chrX:5764853-5764933 3.70e-01 80 chrII:7679661-7679741 8.80e-02 23_[+2(4.78e-05)]_49 chrV:6679885-6679965 9.18e-03 35_[+1(4.29e-05)]_37 chrIV:3352206-3352286 1.05e-03 1_[+3(1.63e-05)]_71 chrX:11384848-11384928 7.48e-04 32_[+3(1.63e-05)]_11_[+5(8.69e-05)]_\ 21 chrX:2108362-2108442 8.07e-01 80 chrII:2775004-2775084 3.43e-01 80 chrV:14506080-14506160 2.12e-01 80 chrX:7728232-7728312 9.51e-01 80 chrIII:4010351-4010431 1.65e-01 80 chrII:6418149-6418229 5.15e-01 80 chrI:7715696-7715776 5.90e-02 80 chrV:156201-156281 1.74e-01 67_[+3(6.46e-05)]_5 chrX:9939908-9939988 3.62e-01 80 chrIII:7490264-7490344 9.11e-01 80 chrI:1645647-1645727 8.45e-01 80 chrI:11062926-11063006 1.97e-01 60_[+1(4.29e-05)]_12 chrIV:16410185-16410265 3.17e-02 80 chrIV:1687194-1687274 1.41e-01 6_[+5(8.69e-05)]_66 chrX:11474335-11474415 4.70e-01 80 chrII:13456799-13456879 8.36e-02 80 chrIII:1054357-1054437 7.85e-01 80 chrX:13679081-13679161 7.37e-01 80 chrX:2776452-2776532 1.34e-01 80 chrIV:12396977-12397057 8.62e-02 17_[+2(3.21e-05)]_55 chrX:6625455-6625535 9.27e-01 80 chrX:857856-857936 1.05e-03 28_[+2(1.63e-05)]_44 chrIII:9112634-9112714 1.56e-02 68_[+5(2.87e-05)]_4 chrII:5228021-5228101 8.37e-01 80 chrIII:5940105-5940185 9.82e-02 54_[+3(9.64e-05)]_18 chrX:7729453-7729533 1.50e-01 80 chrII:8751200-8751280 3.85e-01 80 chrX:7460608-7460688 1.54e-01 15_[+1(2.88e-05)]_57 chrII:9491170-9491250 2.87e-01 80 chrI:2296221-2296301 5.48e-01 80 chrIV:1019872-1019952 9.86e-01 80 chrX:12494675-12494755 7.88e-02 80 chrI:5422369-5422449 2.34e-01 80 chrV:16042372-16042452 1.45e-01 80 chrIII:11848481-11848561 5.27e-01 80 chrI:1132033-1132113 7.24e-02 80 chrIII:13780606-13780686 5.12e-01 80 chrV:2595905-2595985 3.58e-01 80 chrIV:10867866-10867946 3.38e-01 80 chrV:11701319-11701399 2.83e-01 80 chrI:5875678-5875758 4.95e-01 80 chrIV:4756064-4756144 6.08e-01 80 chrV:14177904-14177984 4.67e-02 30_[+3(6.46e-05)]_19_[+3(9.64e-05)]_\ 15 chrI:7158978-7159058 8.93e-02 41_[+1(2.88e-05)]_31 chrX:10596675-10596755 9.14e-03 25_[+5(1.43e-05)]_47 chrI:14808481-14808561 9.57e-02 15_[+3(9.64e-05)]_57 chrIV:4702253-4702333 6.88e-02 80 chrIII:13305397-13305477 2.50e-02 80 chrI:2419800-2419880 8.22e-01 80 chrIII:1929338-1929418 9.88e-01 80 chrIV:5561751-5561831 7.13e-02 51_[+1(7.18e-05)]_21 chrI:5067295-5067375 3.70e-01 80 chrIII:6475641-6475721 9.72e-01 80 chrV:11673998-11674078 2.95e-03 25_[+2(1.63e-05)]_47 chrIII:2305069-2305149 7.95e-02 80 chrII:6441215-6441295 1.13e-01 12_[+2(4.78e-05)]_60 chrII:10784980-10785060 5.37e-01 80 chrIII:179299-179379 8.82e-01 80 chrI:5637885-5637965 4.78e-01 80 chrX:4813169-4813249 3.79e-02 80 chrI:2204875-2204955 3.71e-01 80 chrX:2498015-2498095 2.16e-04 35_[+3(9.64e-05)]_21_[+5(1.43e-05)]_\ 8 chrI:14226429-14226509 8.87e-01 80 chrI:767288-767368 1.00e+00 80 chrII:4107297-4107377 6.33e-01 80 chrV:16553036-16553116 1.26e-01 80 chrIV:1908564-1908644 2.94e-01 80 chrX:10206321-10206401 3.74e-02 51_[+5(8.69e-05)]_21 chrX:2802633-2802713 6.96e-03 80 chrII:10081410-10081490 3.33e-01 80 chrX:14581649-14581729 9.52e-03 18_[+2(3.21e-05)]_54 chrII:4273827-4273907 9.21e-01 80 chrI:1559212-1559292 4.57e-04 48_[+3(3.21e-05)]_13_[+2(1.63e-05)]_\ 3 chrIII:4128625-4128705 2.13e-01 16_[+2(6.39e-05)]_56 chrII:873177-873257 9.85e-02 80 chrI:9116201-9116281 1.96e-02 80 chrIII:8901252-8901332 5.57e-01 80 chrV:3150154-3150234 5.75e-03 72_[+5(1.43e-05)] chrX:17330582-17330662 1.11e-01 80 chrIV:11984027-11984107 2.80e-01 5_[+3(9.64e-05)]_67 chrII:15008557-15008637 7.74e-03 8_[+3(3.21e-05)]_64 chrII:5877834-5877914 5.44e-01 80 chrI:636796-636876 3.98e-01 80 chrV:14432333-14432413 2.28e-02 4_[+5(2.87e-05)]_7_[+5(2.87e-05)]_\ 53 chrIV:3279012-3279092 2.64e-01 80 chrI:11664935-11665015 7.22e-02 80 chrX:1120424-1120504 4.58e-03 80 chrV:17812235-17812315 8.03e-01 80 chrII:14248237-14248317 1.61e-01 13_[+1(4.29e-05)]_59 chrX:5338093-5338173 1.17e-01 65_[+1(4.29e-05)]_7 chrIII:9742159-9742239 3.57e-02 39_[+2(4.78e-05)]_10_[+2(1.63e-05)]_\ 15 chrII:14015582-14015662 5.88e-01 80 chrV:14845565-14845645 8.77e-01 80 chrI:2487865-2487945 9.39e-01 80 chrIV:3521078-3521158 6.30e-02 80 chrI:3842537-3842617 6.52e-01 80 chrV:6541901-6541981 1.21e-03 71_[+2(1.63e-05)]_1 chrII:11064322-11064402 5.24e-01 80 chrII:3999749-3999829 4.69e-01 80 chrI:7087736-7087816 9.35e-01 80 chrX:8252401-8252481 8.30e-01 80 chrI:2831531-2831611 2.85e-01 80 chrI:9440410-9440490 1.13e-01 80 chrX:11124163-11124243 6.26e-01 80 chrII:7358703-7358783 1.67e-01 80 chrI:6280533-6280613 3.71e-02 80 chrIII:10670154-10670234 3.11e-01 80 chrIV:13778432-13778512 3.75e-03 50_[+1(2.88e-05)]_22 chrIII:369045-369125 7.10e-01 80 chrI:4745377-4745457 5.41e-01 80 chrX:5113305-5113385 6.11e-01 80 chrI:4320833-4320913 1.42e-02 80 chrX:6953485-6953565 2.29e-02 80 chrI:9447392-9447472 3.07e-03 21_[+1(2.88e-05)]_14_[+4(1.39e-05)]_\ 29 chrII:9960102-9960182 3.36e-04 44_[+3(3.21e-05)]_28 chrIII:11267486-11267566 9.76e-03 17_[+3(1.63e-05)]_55 chrI:6279152-6279232 5.97e-02 35_[+3(6.46e-05)]_37 chrIII:5720675-5720755 7.30e-02 80 chrI:2970830-2970910 1.16e-03 28_[+2(6.39e-05)]_7_[+5(5.77e-05)]_\ 29 chrV:14806408-14806488 1.43e-01 39_[+1(4.29e-05)]_33 chrI:7711750-7711830 1.78e-01 24_[+1(4.29e-05)]_48 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n12.farnam.hpc.yale.internal ********************************************************************************