******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/worm/fasta/RankLinear2.0_40/rec-8.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrX:10018353-10018433 1.0000 80 chrM:1830-1910 1.0000 80 chrM:3301-3381 1.0000 80 chrX:8419436-8419516 1.0000 80 chrX:8640845-8640925 1.0000 80 chrIV:13701635-13701715 1.0000 80 chrX:7507346-7507426 1.0000 80 chrIV:16775201-16775281 1.0000 80 chrV:6559798-6559878 1.0000 80 chrM:1552-1632 1.0000 80 chrIV:12005523-12005603 1.0000 80 chrII:9056383-9056463 1.0000 80 chrX:14679140-14679220 1.0000 80 chrX:10148639-10148719 1.0000 80 chrX:9024368-9024448 1.0000 80 chrV:3455257-3455337 1.0000 80 chrIV:13300204-13300284 1.0000 80 chrIII:3249170-3249250 1.0000 80 chrX:13730367-13730447 1.0000 80 chrX:10124536-10124616 1.0000 80 chrIV:2657497-2657577 1.0000 80 chrX:9090755-9090835 1.0000 80 chrII:14617061-14617141 1.0000 80 chrIV:6421157-6421237 1.0000 80 chrI:11745666-11745746 1.0000 80 chrII:5353817-5353897 1.0000 80 chrM:10146-10226 1.0000 80 chrX:13283656-13283736 1.0000 80 chrX:2528082-2528162 1.0000 80 chrX:16619341-16619421 1.0000 80 chrIII:10746597-10746677 1.0000 80 chrM:3578-3658 1.0000 80 chrV:14420016-14420096 1.0000 80 chrX:8939580-8939660 1.0000 80 chrX:13714815-13714895 1.0000 80 chrIII:13411334-13411414 1.0000 80 chrM:10828-10908 1.0000 80 chrX:14162074-14162154 1.0000 80 chrV:19142730-19142810 1.0000 80 chrI:11977236-11977316 1.0000 80 chrII:8441653-8441733 1.0000 80 chrIII:1600848-1600928 1.0000 80 chrX:11163285-11163365 1.0000 80 chrX:13284797-13284877 1.0000 80 chrX:3793524-3793604 1.0000 80 chrI:10187432-10187512 1.0000 80 chrV:3582082-3582162 1.0000 80 chrM:8212-8292 1.0000 80 chrX:10731989-10732069 1.0000 80 chrX:9622777-9622857 1.0000 80 chrIII:8639278-8639358 1.0000 80 chrIV:15476512-15476592 1.0000 80 chrV:17542424-17542504 1.0000 80 chrIII:7494938-7495018 1.0000 80 chrII:2860276-2860356 1.0000 80 chrII:13117292-13117372 1.0000 80 chrI:852205-852285 1.0000 80 chrV:15547928-15548008 1.0000 80 chrIV:4712414-4712494 1.0000 80 chrI:754636-754716 1.0000 80 chrX:9237872-9237952 1.0000 80 chrIV:14013783-14013863 1.0000 80 chrIV:7083221-7083301 1.0000 80 chrIII:10064273-10064353 1.0000 80 chrIV:10245819-10245899 1.0000 80 chrX:7773856-7773936 1.0000 80 chrI:11579674-11579754 1.0000 80 chrX:12337997-12338077 1.0000 80 chrIV:16400905-16400985 1.0000 80 chrM:3028-3108 1.0000 80 chrIII:4862155-4862235 1.0000 80 chrIV:15526636-15526716 1.0000 80 chrX:14478933-14479013 1.0000 80 chrIV:15693404-15693484 1.0000 80 chrIV:2665773-2665853 1.0000 80 chrX:8608854-8608934 1.0000 80 chrII:7003132-7003212 1.0000 80 chrIV:11320879-11320959 1.0000 80 chrII:4791457-4791537 1.0000 80 chrIV:15049525-15049605 1.0000 80 chrX:8838317-8838397 1.0000 80 chrIII:1744628-1744708 1.0000 80 chrV:14092467-14092547 1.0000 80 chrIV:7043683-7043763 1.0000 80 chrX:5713654-5713734 1.0000 80 chrX:8877349-8877429 1.0000 80 chrX:8650601-8650681 1.0000 80 chrI:13953313-13953393 1.0000 80 chrX:16271218-16271298 1.0000 80 chrII:10926266-10926346 1.0000 80 chrX:15200894-15200974 1.0000 80 chrIV:2664957-2665037 1.0000 80 chrIV:15289734-15289814 1.0000 80 chrIII:13224546-13224626 1.0000 80 chrM:2388-2468 1.0000 80 chrX:8152657-8152737 1.0000 80 chrIII:6888665-6888745 1.0000 80 chrX:9238806-9238886 1.0000 80 chrX:11792639-11792719 1.0000 80 chrX:7898271-7898351 1.0000 80 chrV:2707242-2707322 1.0000 80 chrIV:16503737-16503817 1.0000 80 chrX:15773416-15773496 1.0000 80 chrIII:4930451-4930531 1.0000 80 chrI:6164192-6164272 1.0000 80 chrM:6026-6106 1.0000 80 chrII:5511828-5511908 1.0000 80 chrIII:4912464-4912544 1.0000 80 chrII:13781150-13781230 1.0000 80 chrII:1520043-1520123 1.0000 80 chrM:9100-9180 1.0000 80 chrM:7163-7243 1.0000 80 chrI:378805-378885 1.0000 80 chrV:9536680-9536760 1.0000 80 chrIV:2664170-2664250 1.0000 80 chrX:8846590-8846670 1.0000 80 chrX:5485681-5485761 1.0000 80 chrM:1260-1340 1.0000 80 chrV:15590269-15590349 1.0000 80 chrV:5917867-5917947 1.0000 80 chrX:8969926-8970006 1.0000 80 chrX:8638691-8638771 1.0000 80 chrX:13038920-13039000 1.0000 80 chrV:18981136-18981216 1.0000 80 chrIII:5769843-5769923 1.0000 80 chrV:3585069-3585149 1.0000 80 chrIV:13549487-13549567 1.0000 80 chrIII:5953293-5953373 1.0000 80 chrX:6867881-6867961 1.0000 80 chrX:8381848-8381928 1.0000 80 chrIII:6462544-6462624 1.0000 80 chrX:16298310-16298390 1.0000 80 chrM:1061-1141 1.0000 80 chrX:6286312-6286392 1.0000 80 chrV:15000416-15000496 1.0000 80 chrIV:15931997-15932077 1.0000 80 chrX:9078302-9078382 1.0000 80 chrIII:931566-931646 1.0000 80 chrIV:16400127-16400207 1.0000 80 chrII:5293470-5293550 1.0000 80 chrIV:11147165-11147245 1.0000 80 chrX:16503178-16503258 1.0000 80 chrIV:6117814-6117894 1.0000 80 chrV:11124095-11124175 1.0000 80 chrIII:8144736-8144816 1.0000 80 chrIV:4450087-4450167 1.0000 80 chrX:16300617-16300697 1.0000 80 chrII:3439295-3439375 1.0000 80 chrX:10145156-10145236 1.0000 80 chrV:6099048-6099128 1.0000 80 chrIV:16657742-16657822 1.0000 80 chrM:11034-11114 1.0000 80 chrIV:11928515-11928595 1.0000 80 chrX:7681041-7681121 1.0000 80 chrX:8646437-8646517 1.0000 80 chrIV:13239451-13239531 1.0000 80 chrIV:1711272-1711352 1.0000 80 chrIII:12499456-12499536 1.0000 80 chrX:12347964-12348044 1.0000 80 chrI:6051201-6051281 1.0000 80 chrIV:6481178-6481258 1.0000 80 chrM:8454-8534 1.0000 80 chrM:4870-4950 1.0000 80 chrII:11290517-11290597 1.0000 80 chrV:3686100-3686180 1.0000 80 chrI:9166951-9167031 1.0000 80 chrII:11376686-11376766 1.0000 80 chrI:3987242-3987322 1.0000 80 chrM:2182-2262 1.0000 80 chrX:7906515-7906595 1.0000 80 chrIII:8307508-8307588 1.0000 80 chrV:9318179-9318259 1.0000 80 chrM:12629-12709 1.0000 80 chrM:6230-6310 1.0000 80 chrIV:16399186-16399266 1.0000 80 chrX:2531418-2531498 1.0000 80 chrII:6097608-6097688 1.0000 80 chrI:108531-108611 1.0000 80 chrM:4669-4749 1.0000 80 chrV:10526064-10526144 1.0000 80 chrIII:9868266-9868346 1.0000 80 chrX:9373127-9373207 1.0000 80 chrI:933475-933555 1.0000 80 chrV:8415301-8415381 1.0000 80 chrIV:3336743-3336823 1.0000 80 chrIII:7387527-7387607 1.0000 80 chrII:9591255-9591335 1.0000 80 chrIV:8498903-8498983 1.0000 80 chrV:5284759-5284839 1.0000 80 chrI:4645286-4645366 1.0000 80 chrIV:8973692-8973772 1.0000 80 chrII:3567714-3567794 1.0000 80 chrV:14876448-14876528 1.0000 80 chrI:5842941-5843021 1.0000 80 chrIV:4468136-4468216 1.0000 80 chrIV:10483876-10483956 1.0000 80 chrIV:12417894-12417974 1.0000 80 chrI:5164958-5165038 1.0000 80 chrM:12410-12490 1.0000 80 chrIV:14225123-14225203 1.0000 80 chrIII:13016086-13016166 1.0000 80 chrX:8156707-8156787 1.0000 80 chrIII:10621387-10621467 1.0000 80 chrIII:9465561-9465641 1.0000 80 chrII:14857039-14857119 1.0000 80 chrX:11252581-11252661 1.0000 80 chrIII:11091082-11091162 1.0000 80 chrI:1034274-1034354 1.0000 80 chrX:9091575-9091655 1.0000 80 chrX:6220008-6220088 1.0000 80 chrIV:6206539-6206619 1.0000 80 chrX:8971622-8971702 1.0000 80 chrII:4603172-4603252 1.0000 80 chrX:4789132-4789212 1.0000 80 chrIV:16398472-16398552 1.0000 80 chrI:8530091-8530171 1.0000 80 chrI:9393765-9393845 1.0000 80 chrII:6061656-6061736 1.0000 80 chrI:3037910-3037990 1.0000 80 chrX:8623925-8624005 1.0000 80 chrIV:991322-991402 1.0000 80 chrV:5667464-5667544 1.0000 80 chrV:15082489-15082569 1.0000 80 chrIV:5038890-5038970 1.0000 80 chrIV:3552203-3552283 1.0000 80 chrV:6335378-6335458 1.0000 80 chrII:6913451-6913531 1.0000 80 chrI:4247538-4247618 1.0000 80 chrIII:12399848-12399928 1.0000 80 chrIII:3869658-3869738 1.0000 80 chrIII:11792794-11792874 1.0000 80 chrI:9267136-9267216 1.0000 80 chrX:13781567-13781647 1.0000 80 chrIII:5349392-5349472 1.0000 80 chrV:13468320-13468400 1.0000 80 chrV:13556801-13556881 1.0000 80 chrV:12870078-12870158 1.0000 80 chrIV:16776110-16776190 1.0000 80 chrX:13415151-13415231 1.0000 80 chrIII:1601601-1601681 1.0000 80 chrIII:5068982-5069062 1.0000 80 chrI:6164391-6164471 1.0000 80 chrI:461710-461790 1.0000 80 chrX:16604754-16604834 1.0000 80 chrIV:322599-322679 1.0000 80 chrV:14689568-14689648 1.0000 80 chrX:11935131-11935211 1.0000 80 chrIII:7642146-7642226 1.0000 80 chrX:14804903-14804983 1.0000 80 chrIII:1419996-1420076 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/worm/inference_raw/MEME/RankLinear2.0_40_rec-8/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/worm/fasta/RankLinear2.0_40/rec-8.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.277 C 0.213 G 0.225 T 0.285 Background letter frequencies (from file dataset with add-one prior applied): A 0.277 C 0.214 G 0.225 T 0.285 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GGRTTCGA MEME-1 width = 8 sites = 68 llr = 529 E-value = 8.5e-022 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGRTTCGA MEME-1 Description -------------------------------------------------------------------------------- Simplified A 2:42::1a pos.-specific C :::::8:: probability G 7a6:::9: matrix T 1::7a2:: bits 2.2 2.0 * 1.8 * * * 1.6 * * ** Relative 1.3 * **** Entropy 1.1 * **** (11.2 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GGGTTCGA consensus AA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGRTTCGA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIV:16776110-16776190 27 1.23e-05 CATTCGACGG GGGTTCGA TTCCCCCCGA chrIII:3869658-3869738 34 1.23e-05 GGGAGTTAAA GGGTTCGA ATTTGATGGG chrX:4789132-4789212 50 1.23e-05 TTAAGGTCAG GGGTTCGA GTCCCCTAGG chrX:7681041-7681121 48 1.23e-05 CATAAGGCCG GGGTTCGA TTCCCCGCAA chrII:5293470-5293550 31 1.23e-05 CATAAGGCCG GGGTTCGA TTCCCCGCAA chrX:6286312-6286392 58 1.23e-05 GAGAAGTCTG GGGTTCGA TTCCCCATAC chrIV:2664957-2665037 66 1.23e-05 TGAGGGCCCG GGGTTCGA AACTTTT chrX:5713654-5713734 48 1.23e-05 TTAAGGTCAG GGGTTCGA GTCCCCTAGG chrX:8939580-8939660 29 1.23e-05 TCGGGGGCGT GGGTTCGA ATCCCACTCT chrX:13730367-13730447 40 1.23e-05 TGGTTGTCGC GGGTTCGA GCCCCGCATT chrIV:16775201-16775281 30 1.23e-05 CATTCGACGG GGGTTCGA TTCCCCCCGA chrX:6220008-6220088 73 2.75e-05 GACCACGGCA GGATTCGA chrX:11252581-11252661 20 2.75e-05 GACCACGGCA GGATTCGA ACCTACAATC chrIV:12417894-12417974 43 2.75e-05 GACCACGGCA GGATTCGA ACCTGCAATC chrX:12347964-12348044 54 2.75e-05 GCACGAAGTG GGATTCGA ACCCACGCAC chrX:13038920-13039000 51 2.75e-05 GCCGTCCGCA GGATTCGA ACCTGCGCCC chrV:17542424-17542504 33 2.75e-05 CCGTCGAACC GGATTCGA ACCAGTGACC chrX:10731989-10732069 11 2.75e-05 GACCACGGCA GGATTCGA ACCTACAATC chrX:10148639-10148719 21 2.75e-05 GACCACGGCA GGATTCGA ACCTACAATC chrIV:10245819-10245899 28 3.95e-05 GGCGATGACG GGGATCGA AACCTGTTCG chrX:3793524-3793604 51 3.95e-05 GGTCCTGGCC GGGATCGA ACCGGCGATC chrI:9267136-9267216 36 5.47e-05 TGGGGATTGC AGGTTCGA GTCCTGCCGT chrX:8971622-8971702 37 5.47e-05 CTGCCCGCGT AGGTTCGA ATCCTGCTGA chrX:10145156-10145236 50 5.47e-05 AGAAGATTGT AGGTTCGA ATCCTGCCGT chrII:1520043-1520123 51 5.47e-05 CTGCCCGCGT AGGTTCGA ATCCTGCTGA chrI:6164192-6164272 50 5.47e-05 CCAAGGTCGC AGGTTCGA CCCCTGCTGG chrX:14679140-14679220 71 5.47e-05 CCAAGGTCGC AGGTTCGA CC chrIII:7642146-7642226 23 8.59e-05 TCCGTTGCGG GGAATCGA ACCCCGGCCT chrI:8530091-8530171 48 8.59e-05 TCCGTTGCGG GGAATCGA ACCCCGGCCT chrX:7898271-7898351 48 8.59e-05 TCCGTTGCGG GGAATCGA ACCCCGGCCT chrX:8152657-8152737 69 8.59e-05 TTTCAATATT GGAATCGA CAAG chrX:8838317-8838397 32 8.59e-05 GCGTTCGGGG GGAATCGA ACCCCCGTCG chrIV:14013783-14013863 33 8.59e-05 GGAGGTATGG GGAATCGA ACCCCAGACT chrIV:14225123-14225203 28 1.01e-04 GAGAGGTCCC GGGTTCAA TCCCCGGTTC chrIV:16399186-16399266 47 1.01e-04 GAGAGGGCTG GGGTTCAA TTCCCCATAC chrV:9318179-9318259 72 1.01e-04 GAGAAGTCTG GGGTTCAA T chrIV:15931997-15932077 62 1.01e-04 tgcgagaccc gggttcaa ttcccggccg chrX:12337997-12338077 33 1.20e-04 TGCAATCCCC AGATTCGA AGTCTGGTGC chrV:14689568-14689648 25 1.35e-04 CTTAGGTCAC TGGTTCGA ATCCGGTTCG chrIV:16400127-16400207 53 1.35e-04 AGAAGGTCGG TGGTTCGA GCCCGCCCGA chrIV:16400905-16400985 40 1.35e-04 GTGGCGACGC TGGTTCGA TTCCAGCCGC chrX:2528082-2528162 9 1.35e-04 AAGGTCGC TGGTTCGA TTCCAGCATG chrII:3567714-3567794 61 1.65e-04 GCCCAATGCG GGGCTCGA ACCCGCGACA chrIV:7043683-7043763 56 1.65e-04 CGAGCAGATT GGATTTGA TGTTCATTAA chrIII:1744628-1744708 9 1.65e-04 ATCAAAGC GGGCTCGA ACCCCGGAGC chrI:11579674-11579754 43 1.65e-04 GCCCAATGCG GGGCTCGA ACCCGCGACA chrV:5667464-5667544 11 2.14e-04 TGCCACCGCA GGGATTGA ACTAGCGGAT chrX:9091575-9091655 13 2.14e-04 TCGGGTCGCA GGATTCAA AGTCCTGAGT chrIII:13016086-13016166 32 2.14e-04 GCCCCCAGGC GGGATTGA ACCGCCGACC chrV:3582082-3582162 60 2.14e-04 GGCCGAACTG GGGATTGA ACCCGGGACC chrII:5353817-5353897 7 2.14e-04 ACCGCT GGGATTGA ACTAGTGGAC chrX:6867881-6867961 16 2.26e-04 TGCGGTTAGC GCGTTCGA TTAGCGTGCC chrIV:15289734-15289814 18 2.26e-04 GAAAGGTTGG GCGTTCGA TCCGCTCAGT chrIV:6481178-6481258 33 2.57e-04 AGAAGGTCGC CGGTTCGA ACCCGGCCAG chrX:16300617-16300697 22 2.57e-04 AGAAGGTCGG CGGTTCGA TCCCGCCCGA chrI:9166951-9167031 42 3.04e-04 TCGGTCTTGT AGGTTTGA AGTGTGCATG chrIV:322599-322679 44 3.57e-04 TCCCcggccg ggaattga acccgggtct chrIV:16657742-16657822 24 3.57e-04 AAAACCTGCA GGAATTGA TAAAAAGCCC chrX:9622777-9622857 58 3.57e-04 GGAGGTATGG GGAATTGA ACCCCAGCCC chrX:16619341-16619421 3 3.57e-04 cg ggaattga acccgggtct chrV:6335378-6335458 42 3.90e-04 CAGTGGCAGA GCATTCGA TTGCAGATCG chrX:10124536-10124616 21 3.90e-04 TTGCCCGCGT AGGTTCAA ATCCTGCTCG chrIII:12399848-12399928 72 4.94e-04 GGTTCCACCG AGATTTGA A chrM:12410-12490 27 4.94e-04 TGGTCGAAGA AGATTTGA AGAAGGTGGT chrX:9373127-9373207 34 4.94e-04 AGCAGCGAGT GGTTTCGA TCCACCGACC chrIV:2657497-2657577 53 4.94e-04 TGGCTGGGGC AGATTTGA TATTATACAT chrX:14804903-14804983 23 6.46e-04 GAGAGGTCCC TGGTTCAA CTCCGGGTGC chrV:6559798-6559878 8 6.46e-04 AGGTCCC TGGTTCAA CTCCGGGTGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGRTTCGA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:16776110-16776190 1.2e-05 26_[+1]_46 chrIII:3869658-3869738 1.2e-05 33_[+1]_39 chrX:4789132-4789212 1.2e-05 49_[+1]_23 chrX:7681041-7681121 1.2e-05 47_[+1]_25 chrII:5293470-5293550 1.2e-05 30_[+1]_42 chrX:6286312-6286392 1.2e-05 57_[+1]_15 chrIV:2664957-2665037 1.2e-05 65_[+1]_7 chrX:5713654-5713734 1.2e-05 47_[+1]_25 chrX:8939580-8939660 1.2e-05 28_[+1]_44 chrX:13730367-13730447 1.2e-05 39_[+1]_33 chrIV:16775201-16775281 1.2e-05 29_[+1]_43 chrX:6220008-6220088 2.8e-05 72_[+1] chrX:11252581-11252661 2.8e-05 19_[+1]_53 chrIV:12417894-12417974 2.8e-05 42_[+1]_30 chrX:12347964-12348044 2.8e-05 53_[+1]_19 chrX:13038920-13039000 2.8e-05 50_[+1]_22 chrV:17542424-17542504 2.8e-05 32_[+1]_40 chrX:10731989-10732069 2.8e-05 10_[+1]_62 chrX:10148639-10148719 2.8e-05 20_[+1]_52 chrIV:10245819-10245899 4e-05 27_[+1]_45 chrX:3793524-3793604 4e-05 50_[+1]_22 chrI:9267136-9267216 5.5e-05 35_[+1]_37 chrX:8971622-8971702 5.5e-05 36_[+1]_36 chrX:10145156-10145236 5.5e-05 49_[+1]_23 chrII:1520043-1520123 5.5e-05 50_[+1]_22 chrI:6164192-6164272 5.5e-05 49_[+1]_23 chrX:14679140-14679220 5.5e-05 70_[+1]_2 chrIII:7642146-7642226 8.6e-05 22_[+1]_50 chrI:8530091-8530171 8.6e-05 47_[+1]_25 chrX:7898271-7898351 8.6e-05 47_[+1]_25 chrX:8152657-8152737 8.6e-05 68_[+1]_4 chrX:8838317-8838397 8.6e-05 31_[+1]_41 chrIV:14013783-14013863 8.6e-05 32_[+1]_40 chrIV:14225123-14225203 0.0001 27_[+1]_45 chrIV:16399186-16399266 0.0001 46_[+1]_26 chrV:9318179-9318259 0.0001 71_[+1]_1 chrIV:15931997-15932077 0.0001 61_[+1]_11 chrX:12337997-12338077 0.00012 32_[+1]_40 chrV:14689568-14689648 0.00014 24_[+1]_48 chrIV:16400127-16400207 0.00014 52_[+1]_20 chrIV:16400905-16400985 0.00014 39_[+1]_33 chrX:2528082-2528162 0.00014 8_[+1]_64 chrII:3567714-3567794 0.00016 60_[+1]_12 chrIV:7043683-7043763 0.00016 55_[+1]_17 chrIII:1744628-1744708 0.00016 8_[+1]_64 chrI:11579674-11579754 0.00016 42_[+1]_30 chrV:5667464-5667544 0.00021 10_[+1]_62 chrX:9091575-9091655 0.00021 12_[+1]_60 chrIII:13016086-13016166 0.00021 31_[+1]_41 chrV:3582082-3582162 0.00021 59_[+1]_13 chrII:5353817-5353897 0.00021 6_[+1]_66 chrX:6867881-6867961 0.00023 15_[+1]_57 chrIV:15289734-15289814 0.00023 17_[+1]_55 chrIV:6481178-6481258 0.00026 32_[+1]_40 chrX:16300617-16300697 0.00026 21_[+1]_51 chrI:9166951-9167031 0.0003 41_[+1]_31 chrIV:322599-322679 0.00036 43_[+1]_29 chrIV:16657742-16657822 0.00036 23_[+1]_49 chrX:9622777-9622857 0.00036 57_[+1]_15 chrX:16619341-16619421 0.00036 2_[+1]_70 chrV:6335378-6335458 0.00039 41_[+1]_31 chrX:10124536-10124616 0.00039 20_[+1]_52 chrIII:12399848-12399928 0.00049 71_[+1]_1 chrM:12410-12490 0.00049 26_[+1]_46 chrX:9373127-9373207 0.00049 33_[+1]_39 chrIV:2657497-2657577 0.00049 52_[+1]_20 chrX:14804903-14804983 0.00065 22_[+1]_50 chrV:6559798-6559878 0.00065 7_[+1]_65 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGRTTCGA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGRTTCGA width=8 seqs=68 chrIV:16776110-16776190 ( 27) GGGTTCGA 1 chrIII:3869658-3869738 ( 34) GGGTTCGA 1 chrX:4789132-4789212 ( 50) GGGTTCGA 1 chrX:7681041-7681121 ( 48) GGGTTCGA 1 chrII:5293470-5293550 ( 31) GGGTTCGA 1 chrX:6286312-6286392 ( 58) GGGTTCGA 1 chrIV:2664957-2665037 ( 66) GGGTTCGA 1 chrX:5713654-5713734 ( 48) GGGTTCGA 1 chrX:8939580-8939660 ( 29) GGGTTCGA 1 chrX:13730367-13730447 ( 40) GGGTTCGA 1 chrIV:16775201-16775281 ( 30) GGGTTCGA 1 chrX:6220008-6220088 ( 73) GGATTCGA 1 chrX:11252581-11252661 ( 20) GGATTCGA 1 chrIV:12417894-12417974 ( 43) GGATTCGA 1 chrX:12347964-12348044 ( 54) GGATTCGA 1 chrX:13038920-13039000 ( 51) GGATTCGA 1 chrV:17542424-17542504 ( 33) GGATTCGA 1 chrX:10731989-10732069 ( 11) GGATTCGA 1 chrX:10148639-10148719 ( 21) GGATTCGA 1 chrIV:10245819-10245899 ( 28) GGGATCGA 1 chrX:3793524-3793604 ( 51) GGGATCGA 1 chrI:9267136-9267216 ( 36) AGGTTCGA 1 chrX:8971622-8971702 ( 37) AGGTTCGA 1 chrX:10145156-10145236 ( 50) AGGTTCGA 1 chrII:1520043-1520123 ( 51) AGGTTCGA 1 chrI:6164192-6164272 ( 50) AGGTTCGA 1 chrX:14679140-14679220 ( 71) AGGTTCGA 1 chrIII:7642146-7642226 ( 23) GGAATCGA 1 chrI:8530091-8530171 ( 48) GGAATCGA 1 chrX:7898271-7898351 ( 48) GGAATCGA 1 chrX:8152657-8152737 ( 69) GGAATCGA 1 chrX:8838317-8838397 ( 32) GGAATCGA 1 chrIV:14013783-14013863 ( 33) GGAATCGA 1 chrIV:14225123-14225203 ( 28) GGGTTCAA 1 chrIV:16399186-16399266 ( 47) GGGTTCAA 1 chrV:9318179-9318259 ( 72) GGGTTCAA 1 chrIV:15931997-15932077 ( 62) GGGTTCAA 1 chrX:12337997-12338077 ( 33) AGATTCGA 1 chrV:14689568-14689648 ( 25) TGGTTCGA 1 chrIV:16400127-16400207 ( 53) TGGTTCGA 1 chrIV:16400905-16400985 ( 40) TGGTTCGA 1 chrX:2528082-2528162 ( 9) TGGTTCGA 1 chrII:3567714-3567794 ( 61) GGGCTCGA 1 chrIV:7043683-7043763 ( 56) GGATTTGA 1 chrIII:1744628-1744708 ( 9) GGGCTCGA 1 chrI:11579674-11579754 ( 43) GGGCTCGA 1 chrV:5667464-5667544 ( 11) GGGATTGA 1 chrX:9091575-9091655 ( 13) GGATTCAA 1 chrIII:13016086-13016166 ( 32) GGGATTGA 1 chrV:3582082-3582162 ( 60) GGGATTGA 1 chrII:5353817-5353897 ( 7) GGGATTGA 1 chrX:6867881-6867961 ( 16) GCGTTCGA 1 chrIV:15289734-15289814 ( 18) GCGTTCGA 1 chrIV:6481178-6481258 ( 33) CGGTTCGA 1 chrX:16300617-16300697 ( 22) CGGTTCGA 1 chrI:9166951-9167031 ( 42) AGGTTTGA 1 chrIV:322599-322679 ( 44) GGAATTGA 1 chrIV:16657742-16657822 ( 24) GGAATTGA 1 chrX:9622777-9622857 ( 58) GGAATTGA 1 chrX:16619341-16619421 ( 3) GGAATTGA 1 chrV:6335378-6335458 ( 42) GCATTCGA 1 chrX:10124536-10124616 ( 21) AGGTTCAA 1 chrIII:12399848-12399928 ( 72) AGATTTGA 1 chrM:12410-12490 ( 27) AGATTTGA 1 chrX:9373127-9373207 ( 34) GGTTTCGA 1 chrIV:2657497-2657577 ( 53) AGATTTGA 1 chrX:14804903-14804983 ( 23) TGGTTCAA 1 chrV:6559798-6559878 ( 8) TGGTTCAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGRTTCGA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.13256 E= 8.5e-022 -65 -286 165 -169 -1273 -227 209 -1273 41 -1273 146 -427 -23 -227 -1273 134 -1273 -1273 -1273 181 -1273 192 -1273 -58 -123 -1273 197 -1273 185 -1273 -1273 -1273 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGRTTCGA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 68 E= 8.5e-022 0.176471 0.029412 0.705882 0.088235 0.000000 0.044118 0.955882 0.000000 0.367647 0.000000 0.617647 0.014706 0.235294 0.044118 0.000000 0.720588 0.000000 0.000000 0.000000 1.000000 0.000000 0.808824 0.000000 0.191176 0.117647 0.000000 0.882353 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGRTTCGA MEME-1 regular expression -------------------------------------------------------------------------------- GG[GA][TA]TCGA -------------------------------------------------------------------------------- Time 5.40 secs. ******************************************************************************** ******************************************************************************** MOTIF CTCGGCCR MEME-2 width = 8 sites = 40 llr = 358 E-value = 7.8e-019 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTCGGCCR MEME-2 Description -------------------------------------------------------------------------------- Simplified A :13::::7 pos.-specific C a17::aa: probability G :2:9a::4 matrix T :6:1:::: bits 2.2 * * 2.0 * *** 1.8 * **** 1.6 * **** Relative 1.3 * ***** Entropy 1.1 * ****** (12.9 bits) 0.9 * ****** 0.7 * ****** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CTCGGCCA consensus GA G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCGGCCR MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIV:6206539-6206619 55 8.38e-06 CGTGCTGGTT CTCGGCCA TTTGGTGGGA chrIV:10483876-10483956 34 8.38e-06 AGCATAAATC CTCGGCCA CGGTTTGTGG chrIV:8498903-8498983 10 8.38e-06 TCGAGTTTT CTCGGCCA CGGCCACGAA chrII:6097608-6097688 66 8.38e-06 GAGGGCATTC CTCGGCCA TATTACG chrI:6051201-6051281 21 8.38e-06 CCTTGGACCG CTCGGCCA TCTCTCCGAC chrIV:11928515-11928595 67 8.38e-06 CCTTAGACCA CTCGGCCA TCCGTG chrV:11124095-11124175 50 8.38e-06 TCTCGGGTTC CTCGGCCA TTTTTATCGG chrX:8419436-8419516 45 8.38e-06 CCTTAGACCG CTCGGCCA TCTCTCCACA chrIII:4912464-4912544 63 1.52e-05 CATTCGGATT CTCGGCCG TGGCCTAGAA chrII:4791457-4791537 14 1.52e-05 TAACATCCGA CTCGGCCG CCGGCCGTGT chrIII:9868266-9868346 65 2.18e-05 ACCTCTAGTC CGCGGCCA CCGGAAAA chrIII:4930451-4930531 25 2.18e-05 GTCAAATAGC CGCGGCCA CGGCCATGAG chrX:12337997-12338077 67 2.18e-05 CATTAGGCCA CGCGGCCA CATTTT chrX:8640845-8640925 15 2.18e-05 CATTGCGCCA CGCGGCCA CATTCTTCCC chrI:461710-461790 35 2.72e-05 CTAACATCTC CGCGGCCG CCCAGTGGTG chrIV:8973692-8973772 48 2.72e-05 TCCTAGTCCG CGCGGCCG TGTAGTCCTC chrIII:8307508-8307588 34 2.72e-05 TCCGAAATAA CGCGGCCG AATTTTTGTG chrX:10731989-10732069 66 2.72e-05 CATTGCGCCA CGCGGCCG CACAGAG chrV:13556801-13556881 55 3.80e-05 GCGGAGTTTT CTAGGCCA CCACTCAAGA chrV:13468320-13468400 52 3.80e-05 TGTGCGTTTT CTAGGCCA TTTTGGCGTG chrIII:5349392-5349472 70 3.80e-05 AAAAAGAAAG CTAGGCCA CCG chrI:4247538-4247618 59 3.80e-05 TAGTTACTTC CTAGGCCA CGCGGCCGCG chrIII:8144736-8144816 72 3.80e-05 GTTCTCAAAT CTAGGCCA T chrV:18981136-18981216 52 3.80e-05 TCAGAGTTTC CTAGGCCA CCGCCGGTGT chrII:13117292-13117372 23 3.80e-05 CCCCGAAATG CTAGGCCA CGCGTCGCGT chrII:6913451-6913531 54 4.68e-05 GGAGAGTTTT CTAGGCCG TGTGTGCCGC chrV:15082489-15082569 14 4.68e-05 TTGTCGGATT CTAGGCCG CATGCGCAGA chrIV:6481178-6481258 42 6.13e-05 CCGGTTCGAA CCCGGCCA GGACCTAGTT chrIV:322599-322679 36 8.16e-05 AAAAGTTCTC CCcggccg ggaattgaac chrI:3987242-3987322 52 8.16e-05 GAGAGGAGTA CACGGCCG AGAATCTATG chrII:11290517-11290597 46 8.16e-05 GGGAGGAGTA CACGGCCG AGAATCCCAA chrIV:15931997-15932077 72 8.16e-05 gggttcaatt cccggccg G chrIV:15526636-15526716 33 8.16e-05 GAGAGGACTA CACGGCCG AGATTCCGAC chrV:14876448-14876528 8 8.85e-05 GAGCTAT CGAGGCCG ACATGCAAAC chrV:12870078-12870158 68 9.92e-05 CGCGCACTTC CTCTGCCA TTTCA chrIII:13016086-13016166 70 9.92e-05 GAGACAGACG CTCTGCCA CTG chrX:13283656-13283736 30 9.92e-05 TAGACAGACG CTCTGCCA CTGAGCCAAT chrX:8381848-8381928 13 1.18e-04 CATTAGGCCA CAAGGCCA CGATGTGCAA chrV:14092467-14092547 64 1.59e-04 TGTCCGGACA CTCGGGCA TATAACTGT chrX:6220008-6220088 60 1.69e-04 AGCAAAAAGT CTCGACCA CGGCAGGATT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCGGCCR MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:6206539-6206619 8.4e-06 54_[+2]_18 chrIV:10483876-10483956 8.4e-06 33_[+2]_39 chrIV:8498903-8498983 8.4e-06 9_[+2]_63 chrII:6097608-6097688 8.4e-06 65_[+2]_7 chrI:6051201-6051281 8.4e-06 20_[+2]_52 chrIV:11928515-11928595 8.4e-06 66_[+2]_6 chrV:11124095-11124175 8.4e-06 49_[+2]_23 chrX:8419436-8419516 8.4e-06 44_[+2]_28 chrIII:4912464-4912544 1.5e-05 62_[+2]_10 chrII:4791457-4791537 1.5e-05 13_[+2]_59 chrIII:9868266-9868346 2.2e-05 64_[+2]_8 chrIII:4930451-4930531 2.2e-05 24_[+2]_48 chrX:12337997-12338077 2.2e-05 66_[+2]_6 chrX:8640845-8640925 2.2e-05 14_[+2]_58 chrI:461710-461790 2.7e-05 34_[+2]_38 chrIV:8973692-8973772 2.7e-05 47_[+2]_25 chrIII:8307508-8307588 2.7e-05 33_[+2]_39 chrX:10731989-10732069 2.7e-05 65_[+2]_7 chrV:13556801-13556881 3.8e-05 54_[+2]_18 chrV:13468320-13468400 3.8e-05 51_[+2]_21 chrIII:5349392-5349472 3.8e-05 69_[+2]_3 chrI:4247538-4247618 3.8e-05 58_[+2]_14 chrIII:8144736-8144816 3.8e-05 71_[+2]_1 chrV:18981136-18981216 3.8e-05 51_[+2]_21 chrII:13117292-13117372 3.8e-05 22_[+2]_50 chrII:6913451-6913531 4.7e-05 53_[+2]_19 chrV:15082489-15082569 4.7e-05 13_[+2]_59 chrIV:6481178-6481258 6.1e-05 41_[+2]_31 chrIV:322599-322679 8.2e-05 35_[+2]_37 chrI:3987242-3987322 8.2e-05 51_[+2]_21 chrII:11290517-11290597 8.2e-05 45_[+2]_27 chrIV:15931997-15932077 8.2e-05 71_[+2]_1 chrIV:15526636-15526716 8.2e-05 32_[+2]_40 chrV:14876448-14876528 8.9e-05 7_[+2]_65 chrV:12870078-12870158 9.9e-05 67_[+2]_5 chrIII:13016086-13016166 9.9e-05 69_[+2]_3 chrX:13283656-13283736 9.9e-05 29_[+2]_43 chrX:8381848-8381928 0.00012 12_[+2]_60 chrV:14092467-14092547 0.00016 63_[+2]_9 chrX:6220008-6220088 0.00017 59_[+2]_13 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCGGCCR MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTCGGCCR width=8 seqs=40 chrIV:6206539-6206619 ( 55) CTCGGCCA 1 chrIV:10483876-10483956 ( 34) CTCGGCCA 1 chrIV:8498903-8498983 ( 10) CTCGGCCA 1 chrII:6097608-6097688 ( 66) CTCGGCCA 1 chrI:6051201-6051281 ( 21) CTCGGCCA 1 chrIV:11928515-11928595 ( 67) CTCGGCCA 1 chrV:11124095-11124175 ( 50) CTCGGCCA 1 chrX:8419436-8419516 ( 45) CTCGGCCA 1 chrIII:4912464-4912544 ( 63) CTCGGCCG 1 chrII:4791457-4791537 ( 14) CTCGGCCG 1 chrIII:9868266-9868346 ( 65) CGCGGCCA 1 chrIII:4930451-4930531 ( 25) CGCGGCCA 1 chrX:12337997-12338077 ( 67) CGCGGCCA 1 chrX:8640845-8640925 ( 15) CGCGGCCA 1 chrI:461710-461790 ( 35) CGCGGCCG 1 chrIV:8973692-8973772 ( 48) CGCGGCCG 1 chrIII:8307508-8307588 ( 34) CGCGGCCG 1 chrX:10731989-10732069 ( 66) CGCGGCCG 1 chrV:13556801-13556881 ( 55) CTAGGCCA 1 chrV:13468320-13468400 ( 52) CTAGGCCA 1 chrIII:5349392-5349472 ( 70) CTAGGCCA 1 chrI:4247538-4247618 ( 59) CTAGGCCA 1 chrIII:8144736-8144816 ( 72) CTAGGCCA 1 chrV:18981136-18981216 ( 52) CTAGGCCA 1 chrII:13117292-13117372 ( 23) CTAGGCCA 1 chrII:6913451-6913531 ( 54) CTAGGCCG 1 chrV:15082489-15082569 ( 14) CTAGGCCG 1 chrIV:6481178-6481258 ( 42) CCCGGCCA 1 chrIV:322599-322679 ( 36) CCCGGCCG 1 chrI:3987242-3987322 ( 52) CACGGCCG 1 chrII:11290517-11290597 ( 46) CACGGCCG 1 chrIV:15931997-15932077 ( 72) CCCGGCCG 1 chrIV:15526636-15526716 ( 33) CACGGCCG 1 chrV:14876448-14876528 ( 8) CGAGGCCG 1 chrV:12870078-12870158 ( 68) CTCTGCCA 1 chrIII:13016086-13016166 ( 70) CTCTGCCA 1 chrX:13283656-13283736 ( 30) CTCTGCCA 1 chrX:8381848-8381928 ( 13) CAAGGCCA 1 chrV:14092467-14092547 ( 64) CTCGGGCA 1 chrX:6220008-6220088 ( 60) CTCGACCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCGGCCR MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.77545 E= 7.8e-019 -1197 223 -1197 -1197 -147 -151 0 107 -1 176 -1197 -1197 -1197 -1197 204 -193 -347 -1197 212 -1197 -1197 219 -316 -1197 -1197 223 -1197 -1197 123 -1197 64 -1197 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCGGCCR MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 40 E= 7.8e-019 0.000000 1.000000 0.000000 0.000000 0.100000 0.075000 0.225000 0.600000 0.275000 0.725000 0.000000 0.000000 0.000000 0.000000 0.925000 0.075000 0.025000 0.000000 0.975000 0.000000 0.000000 0.975000 0.025000 0.000000 0.000000 1.000000 0.000000 0.000000 0.650000 0.000000 0.350000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCGGCCR MEME-2 regular expression -------------------------------------------------------------------------------- C[TG][CA]GGCC[AG] -------------------------------------------------------------------------------- Time 9.81 secs. ******************************************************************************** ******************************************************************************** MOTIF CCGAGAGG MEME-3 width = 8 sites = 28 llr = 254 E-value = 3.9e-006 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCGAGAGG MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::8:8:1 pos.-specific C 9a:1:1:: probability G ::9:a:a9 matrix T 1::1:2:: bits 2.2 * * * 2.0 * * * 1.8 ** * ** 1.6 *** * ** Relative 1.3 *** * ** Entropy 1.1 *** * ** (13.1 bits) 0.9 *** **** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CCGAGAGG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGAGAGG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrV:13556801-13556881 28 9.01e-06 TCTCTCTTCT CCGAGAGG AGTTCACAGG chrV:13468320-13468400 18 9.01e-06 TTATGTTTTT CCGAGAGG GCTACACGAC chrIII:5349392-5349472 33 9.01e-06 AAAATGCTGT CCGAGAGG AGTCCGCGGG chrII:6913451-6913531 18 9.01e-06 AATTTATTGT CCGAGAGG AGTACACGAC chrIII:9868266-9868346 22 9.01e-06 AAATTATTTT CCGAGAGG ACTCCGCCAG chrI:3987242-3987322 40 9.01e-06 CACGCTTTGT CCGAGAGG AGTACACGGC chrIII:8144736-8144816 24 9.01e-06 TTGGCTCTGT CCGAGAGG AGTACACACA chrIII:4912464-4912544 36 9.01e-06 CTTGTCTTGT CCGAGAGG AGTACACGAC chrIV:15526636-15526716 21 9.01e-06 CACGGTTTGT CCGAGAGG ACTACACGGC chrIV:6206539-6206619 19 2.52e-05 CGAGAGTAGT CCGCGAGG GTTGTAATCC chrII:1520043-1520123 2 2.52e-05 T CCGAGTGG TTAAGGAGAT chrI:754636-754716 54 2.52e-05 GCCGTTCTGG CCGAGTGG TCTAAGGCGC chrIII:8639278-8639358 38 2.52e-05 GCACGGATGG CCGAGTGG TCTAAGGCGC chrIII:5769843-5769923 71 3.22e-05 GGAGAGATGG CCGAGCGG TC chrX:14804903-14804983 11 5.34e-05 CGACTGCAGA TCGAGAGG TCCCTGGTTC chrV:6335378-6335458 57 5.34e-05 CGATTGCAGA TCGAGAGG TCCCTGGTTC chrII:6061656-6061736 14 5.34e-05 TGCATCTTGT CCGTGAGG AGTACACGGC chrIII:10621387-10621467 24 5.34e-05 aaaaaaTCGT TCGAGAGG AGTCCGCAGC chrV:14876448-14876528 47 5.34e-05 GCCGTCAAGA CCGTGAGG GTACTTCCTC chrIV:991322-991402 4 7.90e-05 AGC CCGAGAGA GGATATTCGT chrI:9393765-9393845 34 7.90e-05 TTATGATAGT CCGCGTGG ACTACACGAC chrII:11290517-11290597 34 7.90e-05 TAATCATTGT CCGGGAGG AGTACACGGC chrV:6099048-6099128 33 7.90e-05 ATCAATTAAC CCGAGAGA ATAGGAGAGA chrX:10145156-10145236 2 7.90e-05 G CCGCGTGG CGCAATGGAT chrIV:14225123-14225203 16 8.85e-05 CGCTTTGGGT GCGAGAGG TCCCGGGTTC chrII:4603172-4603252 40 1.16e-04 GGCGCTACTT CCAAGAGG AGTACACACG chrV:5917867-5917947 2 1.16e-04 T CCTAGAGG AGTACACGGT chrII:7003132-7003212 27 1.16e-04 TGTTTGCCTT CCGCGCGG AATGATTTTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGAGAGG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:13556801-13556881 9e-06 27_[+3]_45 chrV:13468320-13468400 9e-06 17_[+3]_55 chrIII:5349392-5349472 9e-06 32_[+3]_40 chrII:6913451-6913531 9e-06 17_[+3]_55 chrIII:9868266-9868346 9e-06 21_[+3]_51 chrI:3987242-3987322 9e-06 39_[+3]_33 chrIII:8144736-8144816 9e-06 23_[+3]_49 chrIII:4912464-4912544 9e-06 35_[+3]_37 chrIV:15526636-15526716 9e-06 20_[+3]_52 chrIV:6206539-6206619 2.5e-05 18_[+3]_54 chrII:1520043-1520123 2.5e-05 1_[+3]_71 chrI:754636-754716 2.5e-05 53_[+3]_19 chrIII:8639278-8639358 2.5e-05 37_[+3]_35 chrIII:5769843-5769923 3.2e-05 70_[+3]_2 chrX:14804903-14804983 5.3e-05 10_[+3]_62 chrV:6335378-6335458 5.3e-05 56_[+3]_16 chrII:6061656-6061736 5.3e-05 13_[+3]_59 chrIII:10621387-10621467 5.3e-05 23_[+3]_49 chrV:14876448-14876528 5.3e-05 46_[+3]_26 chrIV:991322-991402 7.9e-05 3_[+3]_69 chrI:9393765-9393845 7.9e-05 33_[+3]_39 chrII:11290517-11290597 7.9e-05 33_[+3]_39 chrV:6099048-6099128 7.9e-05 32_[+3]_40 chrX:10145156-10145236 7.9e-05 1_[+3]_71 chrIV:14225123-14225203 8.8e-05 15_[+3]_57 chrII:4603172-4603252 0.00012 39_[+3]_33 chrV:5917867-5917947 0.00012 1_[+3]_71 chrII:7003132-7003212 0.00012 26_[+3]_46 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGAGAGG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCGAGAGG width=8 seqs=28 chrV:13556801-13556881 ( 28) CCGAGAGG 1 chrV:13468320-13468400 ( 18) CCGAGAGG 1 chrIII:5349392-5349472 ( 33) CCGAGAGG 1 chrII:6913451-6913531 ( 18) CCGAGAGG 1 chrIII:9868266-9868346 ( 22) CCGAGAGG 1 chrI:3987242-3987322 ( 40) CCGAGAGG 1 chrIII:8144736-8144816 ( 24) CCGAGAGG 1 chrIII:4912464-4912544 ( 36) CCGAGAGG 1 chrIV:15526636-15526716 ( 21) CCGAGAGG 1 chrIV:6206539-6206619 ( 19) CCGCGAGG 1 chrII:1520043-1520123 ( 2) CCGAGTGG 1 chrI:754636-754716 ( 54) CCGAGTGG 1 chrIII:8639278-8639358 ( 38) CCGAGTGG 1 chrIII:5769843-5769923 ( 71) CCGAGCGG 1 chrX:14804903-14804983 ( 11) TCGAGAGG 1 chrV:6335378-6335458 ( 57) TCGAGAGG 1 chrII:6061656-6061736 ( 14) CCGTGAGG 1 chrIII:10621387-10621467 ( 24) TCGAGAGG 1 chrV:14876448-14876528 ( 47) CCGTGAGG 1 chrIV:991322-991402 ( 4) CCGAGAGA 1 chrI:9393765-9393845 ( 34) CCGCGTGG 1 chrII:11290517-11290597 ( 34) CCGGGAGG 1 chrV:6099048-6099128 ( 33) CCGAGAGA 1 chrX:10145156-10145236 ( 2) CCGCGTGG 1 chrIV:14225123-14225203 ( 16) GCGAGAGG 1 chrII:4603172-4603252 ( 40) CCAAGAGG 1 chrV:5917867-5917947 ( 2) CCTAGAGG 1 chrII:7003132-7003212 ( 27) CCGCGCGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGAGAGG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.5697 E= 3.9e-006 -1145 200 -265 -141 -1145 223 -1145 -1145 -295 -1145 205 -299 144 -58 -265 -200 -1145 -1145 215 -1145 144 -158 -1145 -67 -1145 -1145 215 -1145 -195 -1145 205 -1145 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGAGAGG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 28 E= 3.9e-006 0.000000 0.857143 0.035714 0.107143 0.000000 1.000000 0.000000 0.000000 0.035714 0.000000 0.928571 0.035714 0.750000 0.142857 0.035714 0.071429 0.000000 0.000000 1.000000 0.000000 0.750000 0.071429 0.000000 0.178571 0.000000 0.000000 1.000000 0.000000 0.071429 0.000000 0.928571 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGAGAGG MEME-3 regular expression -------------------------------------------------------------------------------- CCGAGAGG -------------------------------------------------------------------------------- Time 13.54 secs. ******************************************************************************** ******************************************************************************** MOTIF TAGCTCAG MEME-4 width = 8 sites = 13 llr = 140 E-value = 2.1e-003 ******************************************************************************** -------------------------------------------------------------------------------- Motif TAGCTCAG MEME-4 Description -------------------------------------------------------------------------------- Simplified A :a::::a: pos.-specific C :::a:a:: probability G ::a:2::a matrix T a:::8::: bits 2.2 ** * * 2.0 ** * * 1.8 **** *** 1.6 **** *** Relative 1.3 ******** Entropy 1.1 ******** (15.5 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TAGCTCAG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAGCTCAG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrV:6335378-6335458 27 1.44e-05 TCGTGGGGTA TAGCTCAG TGGCAGAGCA chrIV:5038890-5038970 37 1.44e-05 TGGGCCTCCT TAGCTCAG TTGGTAGAGC chrX:4789132-4789212 7 1.44e-05 CCTCCT TAGCTCAG TTGGTAGAGC chrIV:16399186-16399266 5 1.44e-05 GGTA TAGCTCAG TGGTAGAGCG chrV:9318179-9318259 30 1.44e-05 CGTGGGGGTA TAGCTCAG GGGTAGAGCG chrX:6286312-6286392 16 1.44e-05 TGCGGGGGTA TAGCTCAG GGGTAGAGCG chrI:6164192-6164272 6 1.44e-05 CGCCA TAGCTCAG TCGGTTAGAG chrX:9238806-9238886 65 1.44e-05 AGCGGGGGTA TAGCTCAG TGGTAGAG chrIII:13224546-13224626 27 1.44e-05 GTGCCGTCGA TAGCTCAG TTGGTAGAGC chrX:5713654-5713734 5 1.44e-05 TCCT TAGCTCAG TTGGTAGAGC chrX:14679140-14679220 27 1.44e-05 ACAGCCGCCA TAGCTCAG TCGGTTAGAG chrX:5485681-5485761 72 2.59e-05 AGTGCTTCCG TAGCGCAG T chrIV:2665773-2665853 31 2.59e-05 GCAGCACGAA TAGCGCAG TGGCTATTGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAGCTCAG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:6335378-6335458 1.4e-05 26_[+4]_46 chrIV:5038890-5038970 1.4e-05 36_[+4]_36 chrX:4789132-4789212 1.4e-05 6_[+4]_66 chrIV:16399186-16399266 1.4e-05 4_[+4]_68 chrV:9318179-9318259 1.4e-05 29_[+4]_43 chrX:6286312-6286392 1.4e-05 15_[+4]_57 chrI:6164192-6164272 1.4e-05 5_[+4]_67 chrX:9238806-9238886 1.4e-05 64_[+4]_8 chrIII:13224546-13224626 1.4e-05 26_[+4]_46 chrX:5713654-5713734 1.4e-05 4_[+4]_68 chrX:14679140-14679220 1.4e-05 26_[+4]_46 chrX:5485681-5485761 2.6e-05 71_[+4]_1 chrIV:2665773-2665853 2.6e-05 30_[+4]_42 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAGCTCAG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TAGCTCAG width=8 seqs=13 chrV:6335378-6335458 ( 27) TAGCTCAG 1 chrIV:5038890-5038970 ( 37) TAGCTCAG 1 chrX:4789132-4789212 ( 7) TAGCTCAG 1 chrIV:16399186-16399266 ( 5) TAGCTCAG 1 chrV:9318179-9318259 ( 30) TAGCTCAG 1 chrX:6286312-6286392 ( 16) TAGCTCAG 1 chrI:6164192-6164272 ( 6) TAGCTCAG 1 chrX:9238806-9238886 ( 65) TAGCTCAG 1 chrIII:13224546-13224626 ( 27) TAGCTCAG 1 chrX:5713654-5713734 ( 5) TAGCTCAG 1 chrX:14679140-14679220 ( 27) TAGCTCAG 1 chrX:5485681-5485761 ( 72) TAGCGCAG 1 chrIV:2665773-2665853 ( 31) TAGCGCAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAGCTCAG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.2095 E= 2.1e-003 -1035 -1035 -1035 181 185 -1035 -1035 -1035 -1035 -1035 215 -1035 -1035 223 -1035 -1035 -1035 -1035 -54 157 -1035 223 -1035 -1035 185 -1035 -1035 -1035 -1035 -1035 215 -1035 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAGCTCAG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 13 E= 2.1e-003 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.153846 0.846154 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAGCTCAG MEME-4 regular expression -------------------------------------------------------------------------------- TAGCTCAG -------------------------------------------------------------------------------- Time 17.30 secs. ******************************************************************************** ******************************************************************************** MOTIF TGGYMKAG MEME-5 width = 8 sites = 32 llr = 269 E-value = 8.9e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGGYMKAG MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::23:a2 pos.-specific C :::47::: probability G :aa::7:8 matrix T a::4:3:: bits 2.2 ** 2.0 ** 1.8 *** * 1.6 *** * Relative 1.3 *** ** Entropy 1.1 *** **** (12.1 bits) 0.9 *** **** 0.7 *** **** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TGGCCGAG consensus TAT A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGYMKAG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrII:14857039-14857119 55 9.27e-06 CCCGCTGCGG TGGCCGAG TCCCTGCCGG chrIII:10064273-10064353 44 9.27e-06 AAATCAAGCC TGGCCGAG GTGGCCGTGG chrII:2860276-2860356 73 9.27e-06 GGCGGAGAGA TGGCCGAG chrIII:11792794-11792874 3 3.36e-05 AG TGGCAGAG CGTCTGTCTC chrI:1034274-1034354 62 3.36e-05 TTCAAATAAT TGGCAGAG TGCCAAGTTT chrI:9393765-9393845 56 4.53e-05 CACGACATGC TGGCCTAG AAACCTCTGC chrIII:9465561-9465641 72 4.53e-05 ACGAGCGCGT TGGCCTAG A chrIII:10621387-10621467 45 4.53e-05 CCGCAGCGCA TGGCCTAG CGACGGGGGA chrI:5164958-5165038 57 4.53e-05 GTTTGCACCA TGGCCTAG AAACACAATG chrIV:10483876-10483956 8 4.53e-05 GCAACAA TGGCCTAG GTTCCACAAG chrV:9536680-9536760 39 4.53e-05 CACCCAAACG TGGCCTAG CAATACCCAA chrIII:4912464-4912544 71 4.53e-05 TTCTCGGCCG TGGCCTAG AA chrIV:5038890-5038970 46 6.13e-05 TTAGCTCAGT TGGTAGAG CGTGAGACTT chrX:4789132-4789212 16 6.13e-05 TTAGCTCAGT TGGTAGAG CGTGAGACTT chrIV:16399186-16399266 13 6.13e-05 TATAGCTCAG TGGTAGAG CGCTCCCTTA chrX:9238806-9238886 73 6.13e-05 TATAGCTCAG TGGTAGAG chrIII:13224546-13224626 36 6.13e-05 ATAGCTCAGT TGGTAGAG CGGAGGACTG chrX:5713654-5713734 14 6.13e-05 TTAGCTCAGT TGGTAGAG CGTGAGACTT chrII:4603172-4603252 61 8.89e-05 ACACACGAGG TGGACGAG AAAACCCTCG chrX:8646437-8646517 50 8.89e-05 TAGTCCCATG TGGTCTAG TGGTTAGGAT chrX:7681041-7681121 6 8.89e-05 CGTTG TGGTCTAG TGGTTAGGAT chrV:5917867-5917947 24 8.89e-05 CACGGTCGTG TGGACGAG GAAGCAAATG chrV:19142730-19142810 65 8.89e-05 GGATCCCATG TGGTCTAG TGGTTAGG chrIII:5068982-5069062 14 1.00e-04 CTAGTGTTTA TGGCCGAA GAAATGCACA chrI:9267136-9267216 53 1.31e-04 AGTCCTGCCG TGGTCGAA ATCTTTTGCT chrM:12410-12490 17 1.31e-04 TTAGCAAGTT TGGTCGAA GAAGATTTGA chrX:10145156-10145236 67 1.31e-04 AATCCTGCCG TGGTCGAA ACGTTT chrV:12870078-12870158 44 1.66e-04 CACGGCGGGA TGGAAGAG AAAACGCGCG chrIV:8973692-8973772 15 1.66e-04 GATGGAAATA TGGAAGAG AAATCAATTG chrI:461710-461790 21 2.11e-04 CACAAGCGGG TGGCCTAA CATCTCCGCG chrM:1061-1141 51 2.31e-04 TTTAGATCTA TGGTAGAA TTTGGATTTA chrIII:5349392-5349472 54 2.65e-04 CCGCGGGAGA TGGACGAA AAAGAAAGCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGYMKAG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:14857039-14857119 9.3e-06 54_[+5]_18 chrIII:10064273-10064353 9.3e-06 43_[+5]_29 chrII:2860276-2860356 9.3e-06 72_[+5] chrIII:11792794-11792874 3.4e-05 2_[+5]_70 chrI:1034274-1034354 3.4e-05 61_[+5]_11 chrI:9393765-9393845 4.5e-05 55_[+5]_17 chrIII:9465561-9465641 4.5e-05 71_[+5]_1 chrIII:10621387-10621467 4.5e-05 44_[+5]_28 chrI:5164958-5165038 4.5e-05 56_[+5]_16 chrIV:10483876-10483956 4.5e-05 7_[+5]_65 chrV:9536680-9536760 4.5e-05 38_[+5]_34 chrIII:4912464-4912544 4.5e-05 70_[+5]_2 chrIV:5038890-5038970 6.1e-05 45_[+5]_27 chrX:4789132-4789212 6.1e-05 15_[+5]_57 chrIV:16399186-16399266 6.1e-05 12_[+5]_60 chrX:9238806-9238886 6.1e-05 72_[+5] chrIII:13224546-13224626 6.1e-05 35_[+5]_37 chrX:5713654-5713734 6.1e-05 13_[+5]_59 chrII:4603172-4603252 8.9e-05 60_[+5]_12 chrX:8646437-8646517 8.9e-05 49_[+5]_23 chrX:7681041-7681121 8.9e-05 5_[+5]_67 chrV:5917867-5917947 8.9e-05 23_[+5]_49 chrV:19142730-19142810 8.9e-05 64_[+5]_8 chrIII:5068982-5069062 0.0001 13_[+5]_59 chrI:9267136-9267216 0.00013 52_[+5]_20 chrM:12410-12490 0.00013 16_[+5]_56 chrX:10145156-10145236 0.00013 66_[+5]_6 chrV:12870078-12870158 0.00017 43_[+5]_29 chrIV:8973692-8973772 0.00017 14_[+5]_58 chrI:461710-461790 0.00021 20_[+5]_52 chrM:1061-1141 0.00023 50_[+5]_22 chrIII:5349392-5349472 0.00026 53_[+5]_19 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGYMKAG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGGYMKAG width=8 seqs=32 chrII:14857039-14857119 ( 55) TGGCCGAG 1 chrIII:10064273-10064353 ( 44) TGGCCGAG 1 chrII:2860276-2860356 ( 73) TGGCCGAG 1 chrIII:11792794-11792874 ( 3) TGGCAGAG 1 chrI:1034274-1034354 ( 62) TGGCAGAG 1 chrI:9393765-9393845 ( 56) TGGCCTAG 1 chrIII:9465561-9465641 ( 72) TGGCCTAG 1 chrIII:10621387-10621467 ( 45) TGGCCTAG 1 chrI:5164958-5165038 ( 57) TGGCCTAG 1 chrIV:10483876-10483956 ( 8) TGGCCTAG 1 chrV:9536680-9536760 ( 39) TGGCCTAG 1 chrIII:4912464-4912544 ( 71) TGGCCTAG 1 chrIV:5038890-5038970 ( 46) TGGTAGAG 1 chrX:4789132-4789212 ( 16) TGGTAGAG 1 chrIV:16399186-16399266 ( 13) TGGTAGAG 1 chrX:9238806-9238886 ( 73) TGGTAGAG 1 chrIII:13224546-13224626 ( 36) TGGTAGAG 1 chrX:5713654-5713734 ( 14) TGGTAGAG 1 chrII:4603172-4603252 ( 61) TGGACGAG 1 chrX:8646437-8646517 ( 50) TGGTCTAG 1 chrX:7681041-7681121 ( 6) TGGTCTAG 1 chrV:5917867-5917947 ( 24) TGGACGAG 1 chrV:19142730-19142810 ( 65) TGGTCTAG 1 chrIII:5068982-5069062 ( 14) TGGCCGAA 1 chrI:9267136-9267216 ( 53) TGGTCGAA 1 chrM:12410-12490 ( 17) TGGTCGAA 1 chrX:10145156-10145236 ( 67) TGGTCGAA 1 chrV:12870078-12870158 ( 44) TGGAAGAG 1 chrIV:8973692-8973772 ( 15) TGGAAGAG 1 chrI:461710-461790 ( 21) TGGCCTAA 1 chrM:1061-1141 ( 51) TGGTAGAA 1 chrIII:5349392-5349472 ( 54) TGGACGAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGYMKAG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.4765 E= 8.9e-001 -1164 -1164 -1164 181 -1164 -1164 215 -1164 -1164 -1164 215 -1164 -82 103 -1164 51 31 162 -1164 -1164 -1164 -1164 155 27 185 -1164 -1164 -1164 -34 -1164 180 -1164 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGYMKAG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 32 E= 8.9e-001 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.156250 0.437500 0.000000 0.406250 0.343750 0.656250 0.000000 0.000000 0.000000 0.000000 0.656250 0.343750 1.000000 0.000000 0.000000 0.000000 0.218750 0.000000 0.781250 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGYMKAG MEME-5 regular expression -------------------------------------------------------------------------------- TGG[CT][CA][GT]A[GA] -------------------------------------------------------------------------------- Time 21.02 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:10018353-10018433 6.13e-01 80 chrM:1830-1910 2.83e-01 80 chrM:3301-3381 5.55e-01 80 chrX:8419436-8419516 3.34e-02 44_[+2(8.38e-06)]_28 chrX:8640845-8640925 3.08e-02 14_[+2(2.18e-05)]_58 chrIV:13701635-13701715 1.49e-01 80 chrX:7507346-7507426 5.81e-01 80 chrIV:16775201-16775281 4.29e-02 29_[+1(1.23e-05)]_43 chrV:6559798-6559878 4.04e-01 80 chrM:1552-1632 8.70e-01 80 chrIV:12005523-12005603 9.97e-01 80 chrII:9056383-9056463 3.70e-01 80 chrX:14679140-14679220 4.51e-04 26_[+4(1.44e-05)]_36_[+1(5.47e-05)]_\ 2 chrX:10148639-10148719 5.69e-03 20_[+1(2.75e-05)]_52 chrX:9024368-9024448 6.22e-01 80 chrV:3455257-3455337 8.85e-01 80 chrIV:13300204-13300284 4.73e-01 80 chrIII:3249170-3249250 9.42e-01 80 chrX:13730367-13730447 1.44e-02 39_[+1(1.23e-05)]_33 chrX:10124536-10124616 2.43e-01 80 chrIV:2657497-2657577 6.45e-02 80 chrX:9090755-9090835 3.66e-01 80 chrII:14617061-14617141 9.41e-03 80 chrIV:6421157-6421237 7.48e-01 80 chrI:11745666-11745746 5.62e-02 80 chrII:5353817-5353897 9.33e-02 80 chrM:10146-10226 9.52e-01 80 chrX:13283656-13283736 6.32e-02 29_[+2(9.92e-05)]_43 chrX:2528082-2528162 4.08e-02 80 chrX:16619341-16619421 1.40e-01 80 chrIII:10746597-10746677 7.79e-01 80 chrM:3578-3658 5.95e-01 80 chrV:14420016-14420096 4.05e-01 80 chrX:8939580-8939660 4.20e-02 28_[+1(1.23e-05)]_44 chrX:13714815-13714895 6.66e-01 80 chrIII:13411334-13411414 1.25e-01 80 chrM:10828-10908 3.92e-01 80 chrX:14162074-14162154 8.05e-01 80 chrV:19142730-19142810 2.38e-02 64_[+5(8.89e-05)]_8 chrI:11977236-11977316 1.92e-01 80 chrII:8441653-8441733 3.72e-01 80 chrIII:1600848-1600928 2.04e-01 80 chrX:11163285-11163365 9.21e-01 80 chrX:13284797-13284877 1.19e-01 80 chrX:3793524-3793604 7.39e-03 50_[+1(3.95e-05)]_22 chrI:10187432-10187512 6.81e-01 80 chrV:3582082-3582162 2.02e-01 80 chrM:8212-8292 8.16e-01 80 chrX:10731989-10732069 1.83e-04 10_[+1(2.75e-05)]_47_[+2(2.72e-05)]_\ 7 chrX:9622777-9622857 3.55e-01 80 chrIII:8639278-8639358 1.18e-04 34_[+5(9.27e-06)]_38 chrIV:15476512-15476592 2.39e-01 80 chrV:17542424-17542504 3.37e-02 32_[+1(2.75e-05)]_40 chrIII:7494938-7495018 8.95e-01 80 chrII:2860276-2860356 1.01e-03 72_[+5(9.27e-06)] chrII:13117292-13117372 8.26e-02 22_[+2(3.80e-05)]_50 chrI:852205-852285 4.80e-01 80 chrV:15547928-15548008 4.22e-01 80 chrIV:4712414-4712494 3.71e-01 80 chrI:754636-754716 5.37e-04 50_[+5(9.27e-06)]_22 chrX:9237872-9237952 5.47e-01 80 chrIV:14013783-14013863 1.16e-01 32_[+1(8.59e-05)]_40 chrIV:7083221-7083301 9.08e-01 80 chrIII:10064273-10064353 1.00e-02 43_[+5(9.27e-06)]_7_[+5(4.53e-05)]_\ 14 chrIV:10245819-10245899 4.62e-02 27_[+1(3.95e-05)]_45 chrX:7773856-7773936 9.98e-01 80 chrI:11579674-11579754 1.17e-01 80 chrX:12337997-12338077 1.01e-03 66_[+2(2.18e-05)]_6 chrIV:16400905-16400985 3.10e-02 80 chrM:3028-3108 7.61e-01 80 chrIII:4862155-4862235 6.13e-01 80 chrIV:15526636-15526716 2.84e-04 20_[+3(9.01e-06)]_4_[+2(8.16e-05)]_\ 40 chrX:14478933-14479013 4.89e-01 80 chrIV:15693404-15693484 5.41e-02 80 chrIV:2665773-2665853 7.42e-02 30_[+4(2.59e-05)]_42 chrX:8608854-8608934 8.02e-01 80 chrII:7003132-7003212 3.75e-01 80 chrIV:11320879-11320959 4.36e-01 80 chrII:4791457-4791537 6.06e-02 13_[+2(1.52e-05)]_59 chrIV:15049525-15049605 5.01e-01 80 chrX:8838317-8838397 1.58e-01 31_[+1(8.59e-05)]_41 chrIII:1744628-1744708 2.53e-02 80 chrV:14092467-14092547 8.18e-02 80 chrIV:7043683-7043763 2.62e-02 80 chrX:5713654-5713734 2.58e-06 4_[+4(1.44e-05)]_1_[+5(6.13e-05)]_\ 26_[+1(1.23e-05)]_25 chrX:8877349-8877429 1.46e-02 80 chrX:8650601-8650681 9.81e-01 80 chrI:13953313-13953393 5.90e-01 80 chrX:16271218-16271298 8.61e-01 80 chrII:10926266-10926346 9.98e-01 80 chrX:15200894-15200974 4.93e-01 80 chrIV:2664957-2665037 1.65e-03 65_[+1(1.23e-05)]_7 chrIV:15289734-15289814 1.81e-02 80 chrIII:13224546-13224626 1.19e-03 26_[+4(1.44e-05)]_1_[+5(6.13e-05)]_\ 37 chrM:2388-2468 7.65e-01 80 chrX:8152657-8152737 1.99e-01 68_[+1(8.59e-05)]_4 chrIII:6888665-6888745 8.75e-01 80 chrX:9238806-9238886 1.06e-03 64_[+4(1.44e-05)]_[+5(6.13e-05)] chrX:11792639-11792719 6.83e-01 80 chrX:7898271-7898351 5.52e-02 47_[+1(8.59e-05)]_25 chrV:2707242-2707322 4.22e-01 80 chrIV:16503737-16503817 9.49e-01 80 chrX:15773416-15773496 6.07e-01 80 chrIII:4930451-4930531 5.71e-03 24_[+2(2.18e-05)]_48 chrI:6164192-6164272 2.02e-04 5_[+4(1.44e-05)]_36_[+1(5.47e-05)]_\ 23 chrM:6026-6106 9.56e-01 80 chrII:5511828-5511908 2.23e-01 80 chrIII:4912464-4912544 8.36e-06 35_[+3(9.01e-06)]_19_[+2(1.52e-05)]_\ [+5(4.53e-05)]_2 chrII:13781150-13781230 5.44e-01 80 chrII:1520043-1520123 4.63e-04 1_[+3(2.52e-05)]_41_[+1(5.47e-05)]_\ 22 chrM:9100-9180 1.00e+00 80 chrM:7163-7243 6.48e-01 80 chrI:378805-378885 9.63e-01 80 chrV:9536680-9536760 9.95e-02 38_[+5(4.53e-05)]_34 chrIV:2664170-2664250 5.97e-01 80 chrX:8846590-8846670 7.95e-01 80 chrX:5485681-5485761 3.14e-02 71_[+4(2.59e-05)]_1 chrM:1260-1340 8.08e-01 80 chrV:15590269-15590349 9.05e-01 80 chrV:5917867-5917947 2.07e-03 23_[+5(8.89e-05)]_49 chrX:8969926-8970006 9.82e-01 80 chrX:8638691-8638771 9.62e-01 80 chrX:13038920-13039000 2.92e-02 50_[+1(2.75e-05)]_22 chrV:18981136-18981216 4.80e-03 51_[+2(3.80e-05)]_21 chrIII:5769843-5769923 3.15e-04 67_[+5(9.27e-06)]_5 chrV:3585069-3585149 5.59e-01 80 chrIV:13549487-13549567 2.59e-01 80 chrIII:5953293-5953373 1.00e+00 80 chrX:6867881-6867961 7.07e-02 80 chrX:8381848-8381928 1.55e-01 80 chrIII:6462544-6462624 9.10e-01 80 chrX:16298310-16298390 2.04e-01 80 chrM:1061-1141 3.78e-01 80 chrX:6286312-6286392 5.17e-05 15_[+4(1.44e-05)]_34_[+1(1.23e-05)]_\ 15 chrV:15000416-15000496 3.48e-01 80 chrIV:15931997-15932077 4.21e-03 71_[+2(8.16e-05)]_1 chrX:9078302-9078382 6.84e-01 80 chrIII:931566-931646 9.13e-01 80 chrIV:16400127-16400207 4.18e-03 80 chrII:5293470-5293550 1.94e-02 30_[+1(1.23e-05)]_42 chrIV:11147165-11147245 7.61e-01 80 chrX:16503178-16503258 1.96e-01 80 chrIV:6117814-6117894 5.12e-01 80 chrV:11124095-11124175 4.19e-02 49_[+2(8.38e-06)]_23 chrIII:8144736-8144816 4.16e-05 23_[+3(9.01e-06)]_40_[+2(3.80e-05)]_\ 1 chrIV:4450087-4450167 1.96e-01 80 chrX:16300617-16300697 1.14e-01 80 chrII:3439295-3439375 5.53e-01 80 chrX:10145156-10145236 1.17e-04 1_[+3(7.90e-05)]_40_[+1(5.47e-05)]_\ 23 chrV:6099048-6099128 6.28e-02 32_[+3(7.90e-05)]_40 chrIV:16657742-16657822 3.79e-01 80 chrM:11034-11114 5.28e-02 80 chrIV:11928515-11928595 2.41e-02 66_[+2(8.38e-06)]_6 chrX:7681041-7681121 1.95e-04 5_[+5(8.89e-05)]_34_[+1(1.23e-05)]_\ 25 chrX:8646437-8646517 1.44e-02 49_[+5(8.89e-05)]_23 chrIV:13239451-13239531 4.39e-01 80 chrIV:1711272-1711352 1.50e-01 80 chrIII:12499456-12499536 7.06e-01 80 chrX:12347964-12348044 6.03e-02 53_[+1(2.75e-05)]_19 chrI:6051201-6051281 2.44e-03 20_[+2(8.38e-06)]_52 chrIV:6481178-6481258 1.58e-02 41_[+2(6.13e-05)]_31 chrM:8454-8534 4.12e-01 80 chrM:4870-4950 7.64e-01 80 chrII:11290517-11290597 1.72e-03 33_[+3(7.90e-05)]_4_[+2(8.16e-05)]_\ 27 chrV:3686100-3686180 7.00e-01 80 chrI:9166951-9167031 3.80e-01 80 chrII:11376686-11376766 3.77e-01 80 chrI:3987242-3987322 2.64e-04 17_[+3(9.01e-06)]_14_[+3(9.01e-06)]_\ 4_[+2(8.16e-05)]_21 chrM:2182-2262 9.66e-01 80 chrX:7906515-7906595 9.71e-01 80 chrIII:8307508-8307588 3.46e-02 33_[+2(2.72e-05)]_39 chrV:9318179-9318259 5.09e-04 29_[+4(1.44e-05)]_43 chrM:12629-12709 7.13e-01 80 chrM:6230-6310 8.23e-01 80 chrIV:16399186-16399266 3.43e-05 4_[+4(1.44e-05)]_[+5(6.13e-05)]_60 chrX:2531418-2531498 5.38e-01 80 chrII:6097608-6097688 1.05e-03 31_[+2(8.16e-05)]_26_[+2(8.38e-06)]_\ 7 chrI:108531-108611 6.90e-01 80 chrM:4669-4749 6.40e-01 80 chrV:10526064-10526144 1.01e-01 80 chrIII:9868266-9868346 9.31e-04 21_[+3(9.01e-06)]_35_[+2(2.18e-05)]_\ 8 chrX:9373127-9373207 1.71e-02 80 chrI:933475-933555 9.77e-01 80 chrV:8415301-8415381 8.78e-01 80 chrIV:3336743-3336823 6.63e-01 80 chrIII:7387527-7387607 8.59e-01 80 chrII:9591255-9591335 3.26e-01 80 chrIV:8498903-8498983 1.76e-02 9_[+2(8.38e-06)]_63 chrV:5284759-5284839 8.42e-01 80 chrI:4645286-4645366 9.19e-01 80 chrIV:8973692-8973772 2.49e-04 47_[+2(2.72e-05)]_25 chrII:3567714-3567794 5.98e-02 80 chrV:14876448-14876528 2.50e-03 7_[+2(8.85e-05)]_31_[+3(5.34e-05)]_\ 26 chrI:5842941-5843021 2.98e-01 80 chrIV:4468136-4468216 2.49e-01 80 chrIV:10483876-10483956 6.06e-04 7_[+5(4.53e-05)]_18_[+2(8.38e-06)]_\ 39 chrIV:12417894-12417974 3.68e-02 42_[+1(2.75e-05)]_30 chrI:5164958-5165038 1.23e-01 56_[+5(4.53e-05)]_16 chrM:12410-12490 7.08e-04 80 chrIV:14225123-14225203 1.09e-02 15_[+3(8.85e-05)]_57 chrIII:13016086-13016166 4.74e-03 69_[+2(9.92e-05)]_3 chrX:8156707-8156787 4.28e-01 80 chrIII:10621387-10621467 1.21e-04 23_[+3(5.34e-05)]_13_[+5(4.53e-05)]_\ 28 chrIII:9465561-9465641 6.18e-02 71_[+5(4.53e-05)]_1 chrII:14857039-14857119 6.22e-03 54_[+5(9.27e-06)]_18 chrX:11252581-11252661 5.69e-03 19_[+1(2.75e-05)]_53 chrIII:11091082-11091162 9.32e-01 80 chrI:1034274-1034354 4.56e-03 61_[+5(3.36e-05)]_11 chrX:9091575-9091655 2.39e-01 80 chrX:6220008-6220088 4.35e-03 72_[+1(2.75e-05)] chrIV:6206539-6206619 1.48e-04 18_[+3(2.52e-05)]_9_[+2(3.80e-05)]_\ 11_[+2(8.38e-06)]_18 chrX:8971622-8971702 1.44e-02 36_[+1(5.47e-05)]_36 chrII:4603172-4603252 3.42e-03 60_[+5(8.89e-05)]_12 chrX:4789132-4789212 2.58e-06 6_[+4(1.44e-05)]_1_[+5(6.13e-05)]_\ 26_[+1(1.23e-05)]_23 chrIV:16398472-16398552 9.72e-01 80 chrI:8530091-8530171 5.60e-02 47_[+1(8.59e-05)]_25 chrI:9393765-9393845 9.03e-03 33_[+3(7.90e-05)]_14_[+5(4.53e-05)]_\ 17 chrII:6061656-6061736 3.48e-03 13_[+3(5.34e-05)]_59 chrI:3037910-3037990 6.98e-01 80 chrX:8623925-8624005 8.86e-01 80 chrIV:991322-991402 1.03e-01 3_[+3(7.90e-05)]_69 chrV:5667464-5667544 5.28e-02 80 chrV:15082489-15082569 1.98e-02 13_[+2(4.68e-05)]_59 chrIV:5038890-5038970 3.21e-04 36_[+4(1.44e-05)]_1_[+5(6.13e-05)]_\ 27 chrIV:3552203-3552283 4.37e-01 80 chrV:6335378-6335458 2.06e-06 26_[+4(1.44e-05)]_[+5(3.36e-05)]_14_\ [+3(5.34e-05)]_16 chrII:6913451-6913531 3.08e-04 17_[+3(9.01e-06)]_28_[+2(4.68e-05)]_\ 19 chrI:4247538-4247618 6.78e-03 58_[+2(3.80e-05)]_[+2(2.72e-05)]_6 chrIII:12399848-12399928 2.55e-01 80 chrIII:3869658-3869738 6.51e-02 33_[+1(1.23e-05)]_39 chrIII:11792794-11792874 9.34e-03 2_[+5(3.36e-05)]_70 chrI:9267136-9267216 1.05e-02 35_[+1(5.47e-05)]_37 chrX:13781567-13781647 4.64e-01 80 chrIII:5349392-5349472 1.13e-04 32_[+3(9.01e-06)]_29_[+2(3.80e-05)]_\ 3 chrV:13468320-13468400 1.15e-03 17_[+3(9.01e-06)]_26_[+2(3.80e-05)]_\ 21 chrV:13556801-13556881 5.08e-04 27_[+3(9.01e-06)]_19_[+2(3.80e-05)]_\ 18 chrV:12870078-12870158 1.44e-03 67_[+2(9.92e-05)]_5 chrIV:16776110-16776190 4.29e-02 26_[+1(1.23e-05)]_46 chrX:13415151-13415231 1.33e-01 80 chrIII:1601601-1601681 4.03e-01 80 chrIII:5068982-5069062 1.33e-01 80 chrI:6164391-6164471 8.66e-01 80 chrI:461710-461790 1.49e-03 34_[+2(2.72e-05)]_38 chrX:16604754-16604834 5.54e-01 80 chrIV:322599-322679 1.49e-02 35_[+2(8.16e-05)]_37 chrV:14689568-14689648 1.91e-01 80 chrX:11935131-11935211 3.14e-01 80 chrIII:7642146-7642226 3.33e-02 22_[+1(8.59e-05)]_50 chrX:14804903-14804983 3.14e-02 10_[+3(5.34e-05)]_62 chrIII:1419996-1420076 5.39e-01 80 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c23n01.farnam.hpc.yale.internal ********************************************************************************