******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/worm/fasta/RankLinear2.0_40/rbr-2.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrIV:5586468-5586548 1.0000 80 chrX:8952216-8952296 1.0000 80 chrX:10656741-10656821 1.0000 80 chrIV:5081210-5081290 1.0000 80 chrX:9668704-9668784 1.0000 80 chrIV:5941446-5941526 1.0000 80 chrIII:3984265-3984345 1.0000 80 chrV:12819300-12819380 1.0000 80 chrIV:12584309-12584389 1.0000 80 chrX:15342369-15342449 1.0000 80 chrIV:2896128-2896208 1.0000 80 chrIV:12583289-12583369 1.0000 80 chrV:10020116-10020196 1.0000 80 chrIV:5597504-5597584 1.0000 80 chrI:13351128-13351208 1.0000 80 chrI:9598349-9598429 1.0000 80 chrI:9322613-9322693 1.0000 80 chrIV:5103501-5103581 1.0000 80 chrX:12656807-12656887 1.0000 80 chrIV:7390262-7390342 1.0000 80 chrIII:11334485-11334565 1.0000 80 chrV:8518419-8518499 1.0000 80 chrX:13502515-13502595 1.0000 80 chrX:2807505-2807585 1.0000 80 chrX:16145415-16145495 1.0000 80 chrX:8570210-8570290 1.0000 80 chrV:7980481-7980561 1.0000 80 chrIV:10869086-10869166 1.0000 80 chrX:11068516-11068596 1.0000 80 chrI:12548144-12548224 1.0000 80 chrV:11075780-11075860 1.0000 80 chrV:1943632-1943712 1.0000 80 chrIII:4562238-4562318 1.0000 80 chrII:15190142-15190222 1.0000 80 chrV:14006918-14006998 1.0000 80 chrIII:3220463-3220543 1.0000 80 chrV:10862083-10862163 1.0000 80 chrI:10040186-10040266 1.0000 80 chrIV:4211043-4211123 1.0000 80 chrIV:10819077-10819157 1.0000 80 chrIII:3619781-3619861 1.0000 80 chrI:1807997-1808077 1.0000 80 chrV:6538454-6538534 1.0000 80 chrX:5368380-5368460 1.0000 80 chrX:59234-59314 1.0000 80 chrX:11899226-11899306 1.0000 80 chrX:13147267-13147347 1.0000 80 chrX:8806526-8806606 1.0000 80 chrX:15386096-15386176 1.0000 80 chrIV:14618747-14618827 1.0000 80 chrIV:13272617-13272697 1.0000 80 chrII:5276866-5276946 1.0000 80 chrX:10654678-10654758 1.0000 80 chrIII:4922200-4922280 1.0000 80 chrIV:5582398-5582478 1.0000 80 chrI:6398203-6398283 1.0000 80 chrIII:764572-764652 1.0000 80 chrV:9978614-9978694 1.0000 80 chrI:10097378-10097458 1.0000 80 chrII:11621761-11621841 1.0000 80 chrX:4982256-4982336 1.0000 80 chrII:5901752-5901832 1.0000 80 chrIV:5588343-5588423 1.0000 80 chrII:12378971-12379051 1.0000 80 chrI:12549883-12549963 1.0000 80 chrIV:11820095-11820175 1.0000 80 chrII:6808669-6808749 1.0000 80 chrI:5375401-5375481 1.0000 80 chrIII:8988691-8988771 1.0000 80 chrV:13757472-13757552 1.0000 80 chrI:6611346-6611426 1.0000 80 chrV:10722033-10722113 1.0000 80 chrI:14939938-14940018 1.0000 80 chrX:2559563-2559643 1.0000 80 chrIII:1786007-1786087 1.0000 80 chrIII:4063923-4064003 1.0000 80 chrIII:3855013-3855093 1.0000 80 chrIII:4950592-4950672 1.0000 80 chrI:1598582-1598662 1.0000 80 chrI:2126788-2126868 1.0000 80 chrV:4860647-4860727 1.0000 80 chrV:6350239-6350319 1.0000 80 chrIII:7580723-7580803 1.0000 80 chrIV:14260978-14261058 1.0000 80 chrIII:7725107-7725187 1.0000 80 chrII:4456136-4456216 1.0000 80 chrI:2727649-2727729 1.0000 80 chrII:2748404-2748484 1.0000 80 chrX:5298304-5298384 1.0000 80 chrX:14640016-14640096 1.0000 80 chrIV:4570693-4570773 1.0000 80 chrIV:4720706-4720786 1.0000 80 chrIII:11834387-11834467 1.0000 80 chrIII:4656550-4656630 1.0000 80 chrI:7421429-7421509 1.0000 80 chrIV:1549232-1549312 1.0000 80 chrIII:12926224-12926304 1.0000 80 chrX:4588074-4588154 1.0000 80 chrV:9561934-9562014 1.0000 80 chrII:7758565-7758645 1.0000 80 chrIV:5100269-5100349 1.0000 80 chrI:9430714-9430794 1.0000 80 chrIV:7391628-7391708 1.0000 80 chrII:5948890-5948970 1.0000 80 chrX:7284850-7284930 1.0000 80 chrIII:9905419-9905499 1.0000 80 chrIII:13349182-13349262 1.0000 80 chrIV:15984349-15984429 1.0000 80 chrX:6745110-6745190 1.0000 80 chrIII:11185676-11185756 1.0000 80 chrII:3810682-3810762 1.0000 80 chrIV:11871285-11871365 1.0000 80 chrII:7892033-7892113 1.0000 80 chrII:8131543-8131623 1.0000 80 chrIII:4335781-4335861 1.0000 80 chrIV:12651737-12651817 1.0000 80 chrX:4137938-4138018 1.0000 80 chrV:15075066-15075146 1.0000 80 chrII:10016160-10016240 1.0000 80 chrX:16202303-16202383 1.0000 80 chrX:7791984-7792064 1.0000 80 chrX:4218465-4218545 1.0000 80 chrX:4017741-4017821 1.0000 80 chrI:10839191-10839271 1.0000 80 chrI:4909122-4909202 1.0000 80 chrIII:6695350-6695430 1.0000 80 chrIV:7663195-7663275 1.0000 80 chrIV:4034987-4035067 1.0000 80 chrX:15566809-15566889 1.0000 80 chrV:14143760-14143840 1.0000 80 chrX:10768011-10768091 1.0000 80 chrX:6134629-6134709 1.0000 80 chrX:8157288-8157368 1.0000 80 chrV:20789230-20789310 1.0000 80 chrII:3209423-3209503 1.0000 80 chrX:5847448-5847528 1.0000 80 chrV:3717958-3718038 1.0000 80 chrII:1242611-1242691 1.0000 80 chrII:6843922-6844002 1.0000 80 chrII:5725244-5725324 1.0000 80 chrX:1479364-1479444 1.0000 80 chrIII:9698849-9698929 1.0000 80 chrM:1815-1895 1.0000 80 chrIV:17293874-17293954 1.0000 80 chrV:4063717-4063797 1.0000 80 chrIV:6958828-6958908 1.0000 80 chrIII:13348021-13348101 1.0000 80 chrIII:7166823-7166903 1.0000 80 chrIV:14098944-14099024 1.0000 80 chrII:9729910-9729990 1.0000 80 chrIV:5588555-5588635 1.0000 80 chrV:10904988-10905068 1.0000 80 chrI:1053724-1053804 1.0000 80 chrI:6438588-6438668 1.0000 80 chrX:8089416-8089496 1.0000 80 chrII:5334024-5334104 1.0000 80 chrX:6740499-6740579 1.0000 80 chrIII:10153236-10153316 1.0000 80 chrII:14036906-14036986 1.0000 80 chrII:11305786-11305866 1.0000 80 chrII:6994911-6994991 1.0000 80 chrIV:366542-366622 1.0000 80 chrV:10677617-10677697 1.0000 80 chrV:14368346-14368426 1.0000 80 chrIV:5960072-5960152 1.0000 80 chrIII:3681602-3681682 1.0000 80 chrII:7327127-7327207 1.0000 80 chrII:8786025-8786105 1.0000 80 chrV:5502645-5502725 1.0000 80 chrIV:6806746-6806826 1.0000 80 chrI:3334666-3334746 1.0000 80 chrIII:7723803-7723883 1.0000 80 chrIV:10062900-10062980 1.0000 80 chrX:785543-785623 1.0000 80 chrI:4805444-4805524 1.0000 80 chrI:14570101-14570181 1.0000 80 chrIII:5845616-5845696 1.0000 80 chrI:8761972-8762052 1.0000 80 chrX:6971478-6971558 1.0000 80 chrIV:8758755-8758835 1.0000 80 chrIV:1842451-1842531 1.0000 80 chrII:10302217-10302297 1.0000 80 chrIV:16845504-16845584 1.0000 80 chrIV:8040774-8040854 1.0000 80 chrV:8040585-8040665 1.0000 80 chrIII:12472687-12472767 1.0000 80 chrIV:5598872-5598952 1.0000 80 chrI:316523-316603 1.0000 80 chrIII:5757726-5757806 1.0000 80 chrIII:4323300-4323380 1.0000 80 chrV:6658899-6658979 1.0000 80 chrII:14569444-14569524 1.0000 80 chrI:3806669-3806749 1.0000 80 chrIII:12942481-12942561 1.0000 80 chrX:14238444-14238524 1.0000 80 chrV:10041600-10041680 1.0000 80 chrV:619194-619274 1.0000 80 chrIII:2535379-2535459 1.0000 80 chrIII:11336258-11336338 1.0000 80 chrII:7390467-7390547 1.0000 80 chrI:871937-872017 1.0000 80 chrX:15376718-15376798 1.0000 80 chrV:20879460-20879540 1.0000 80 chrII:2976742-2976822 1.0000 80 chrIV:13453643-13453723 1.0000 80 chrIV:11765609-11765689 1.0000 80 chrII:7887477-7887557 1.0000 80 chrI:8792463-8792543 1.0000 80 chrV:5047386-5047466 1.0000 80 chrII:13016549-13016629 1.0000 80 chrI:4311740-4311820 1.0000 80 chrIII:8867580-8867660 1.0000 80 chrII:6993045-6993125 1.0000 80 chrX:15983430-15983510 1.0000 80 chrI:9516134-9516214 1.0000 80 chrII:759929-760009 1.0000 80 chrX:16814110-16814190 1.0000 80 chrV:810576-810656 1.0000 80 chrV:6030634-6030714 1.0000 80 chrIV:659787-659867 1.0000 80 chrII:2220021-2220101 1.0000 80 chrX:14744625-14744705 1.0000 80 chrX:2191993-2192073 1.0000 80 chrIV:10344849-10344929 1.0000 80 chrI:5544051-5544131 1.0000 80 chrI:6435873-6435953 1.0000 80 chrI:4906706-4906786 1.0000 80 chrI:5057050-5057130 1.0000 80 chrIII:3857214-3857294 1.0000 80 chrI:13854431-13854511 1.0000 80 chrII:14270586-14270666 1.0000 80 chrII:1085081-1085161 1.0000 80 chrV:14930256-14930336 1.0000 80 chrX:8017586-8017666 1.0000 80 chrIV:17281732-17281812 1.0000 80 chrII:7838773-7838853 1.0000 80 chrIV:14272675-14272755 1.0000 80 chrIII:5950046-5950126 1.0000 80 chrI:5140362-5140442 1.0000 80 chrIV:8762607-8762687 1.0000 80 chrV:14948783-14948863 1.0000 80 chrII:8796576-8796656 1.0000 80 chrI:10237401-10237481 1.0000 80 chrV:7216075-7216155 1.0000 80 chrX:8163726-8163806 1.0000 80 chrV:12026955-12027035 1.0000 80 chrV:9964389-9964469 1.0000 80 chrIV:8587246-8587326 1.0000 80 chrII:8784697-8784777 1.0000 80 chrX:13143328-13143408 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/worm/inference_raw/MEME/RankLinear2.0_40_rbr-2/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/worm/fasta/RankLinear2.0_40/rbr-2.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.252 C 0.246 G 0.239 T 0.263 Background letter frequencies (from file dataset with add-one prior applied): A 0.252 C 0.246 G 0.24 T 0.263 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF RAGARRAA MEME-1 width = 8 sites = 106 llr = 796 E-value = 1.6e-053 ******************************************************************************** -------------------------------------------------------------------------------- Motif RAGARRAA MEME-1 Description -------------------------------------------------------------------------------- Simplified A 5a1a6779 pos.-specific C 1::::::: probability G 4:9:4331 matrix T :::::::: bits 2.1 * * 1.9 * * 1.6 * * 1.4 *** * Relative 1.2 *** * Entropy 1.0 ******* (10.8 bits) 0.8 ******* 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AAGAAAAA consensus G GGG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAGARRAA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrII:759929-760009 53 1.55e-05 TCGGaagaaa aagaaaaa agaaaacgtc chrIV:5598872-5598952 42 1.55e-05 tTGAAAAAAA AAGAAAAA GAGGAGACAA chrI:8761972-8762052 64 1.55e-05 TAAAAAACGA AAGAAAAA CTTGAAAAT chrV:14143760-14143840 70 1.55e-05 gaggaaaacg aagaaaaa taa chrIV:14260978-14261058 73 1.55e-05 gaagaaaaaa aagaaaaa chrI:10040186-10040266 70 1.55e-05 TATGTGGAAG AAGAAAAA AAG chrX:15342369-15342449 68 1.55e-05 GCGAGAGACG AAGAAAAA AGAAC chrV:9964389-9964469 45 3.02e-05 GCTGCCGCTA GAGAAAAA GAGAGGTGGG chrIV:10344849-10344929 20 3.02e-05 aggagcaaaa gagaaaaa gaaaggagca chrI:316523-316603 6 3.02e-05 TTTCT GAGAAAAA CCGAAAATTT chrIV:8040774-8040854 4 3.02e-05 AAA GAGAAAAA AGGAAAGGAA chrV:9978614-9978694 49 3.02e-05 AGAGAAACGG GAGAAAAA GAAGGGAAAT chrII:5276866-5276946 61 3.02e-05 CTCTGAAATG GAGAAAAA AGAGGCAAAA chrV:6538454-6538534 71 3.02e-05 GGAGATGTAA GAGAAAAA GG chrI:12548144-12548224 19 3.02e-05 GCCAAAGTTA GAGAAAAA GAGACATAGA chrV:8518419-8518499 50 3.02e-05 ACTCACCGAA GAGAAAAA GAGAATTAAA chrV:6030634-6030714 52 4.50e-05 agagagataa aagagaaa tagaatagGA chrI:9516134-9516214 68 4.50e-05 AAGGACATTG AAGAGAAA GCCAA chrIII:8867580-8867660 33 4.50e-05 TTGGGACGAA AAGAGAAA GAGGAGGTGG chrIV:13453643-13453723 24 4.50e-05 GGAAAAAAAG AAGAGAAA AGTGGAAAAA chrV:10904988-10905068 7 4.50e-05 GGAGAA AAGAGAAA GTGGGAAAGG chrX:2807505-2807585 68 4.50e-05 ATGAGGAATT AAGAGAAA ATGAG chrV:7216075-7216155 37 5.90e-05 CGAagagatg gagagaaa agaaacgggc chrV:6658899-6658979 60 5.90e-05 GGGTGGAAAC GAGAGAAA GCAAGGCACA chrIII:5845616-5845696 64 5.90e-05 ctgagatgac gaGAGAAA TTGAAAGAC chrIV:17293874-17293954 52 5.90e-05 TTTTCGTTTA GAGAGAAA GAGCCCGGTG chrIV:12651737-12651817 60 5.90e-05 aaatgagaga gagagaAA CAAAATTCCA chrIII:4063923-4064003 62 5.90e-05 TGCTGACTAA GAGAGAAA GACTCCTCGT chrIV:5103501-5103581 61 5.90e-05 ATCTTGCGCA GAGAGAAA GATAGAAAGC chrV:20789230-20789310 6 8.85e-05 AAGAG AAGAAGAA GACGTACGCT chrIV:4034987-4035067 40 8.85e-05 AGAGGAGAAG AAGAAGAA GCCTTGGCTC chrIV:7663195-7663275 11 8.85e-05 CTCCACTAAA AAGAAGAA CCAAAACAAA chrI:4909122-4909202 34 8.85e-05 TAGCAATATA AAGAAGAA TACTCACGAA chrV:15075066-15075146 71 8.85e-05 CAGAGAGAAT AAGAAGAA GG chrIII:9905419-9905499 18 8.85e-05 TGAGCAACTT aagaagaa gaagaagaag chrV:9561934-9562014 14 8.85e-05 gaagaggatg aagaagaa gacgaaaatg chrI:7421429-7421509 56 8.85e-05 GCGGGAGCAG AAGAAGAA GAAAGCACAA chrIV:4570693-4570773 55 8.85e-05 CATGCTGCTC AAGAAAGA TTTATGTACG chrX:14640016-14640096 40 8.85e-05 TGGAAAAAAA AAGAAGAA GAGGAGATTT chrII:4456136-4456216 53 8.85e-05 AGGACCATAG AAGAAGAA GCCAGTAGTT chrII:6808669-6808749 53 8.85e-05 TGGGGAAAAG AAGAAGAA GCGGTGGGAG chrII:11621761-11621841 40 8.85e-05 GGAAAATGGA AAGAAGAA GAAGACGCAT chrI:1807997-1808077 15 8.85e-05 GAATGTGTTG AAGAAGAA GAAGACGTCA chrV:14006918-14006998 7 8.85e-05 AAATAG AAGAAGAA GACTGAGGAC chrIV:11765609-11765689 10 1.17e-04 ACGGCGGGC GAGAAAGA GTATGCGGGG chrV:4063717-4063797 53 1.17e-04 cgtaaaattt gagaaaga tctcgcagcg chrII:7758565-7758645 54 1.17e-04 CCAAGGCACA GAGAAAGA GACGATGGGG chrV:4860647-4860727 72 1.17e-04 AAAAGACGGG GAGAAGAA G chrV:10722033-10722113 69 1.17e-04 CGCCAAGAAC GAGAAAGA GGGC chrX:15386096-15386176 26 1.17e-04 TTCGAGTGAT GAGAAAGA GAGGGAGAGA chrIV:10819077-10819157 34 1.17e-04 CGGCAGGAGG GAGAAGAA AACGTCAATA chrV:11075780-11075860 50 1.17e-04 AGAATGGCGA GAGAAGAA GAGAGGCCAG chrIII:3984265-3984345 16 1.17e-04 TATAGATTTA GAGAAAGA AGCAAGAAGG chrI:10237401-10237481 53 1.45e-04 AGCACAAAAA AAGAGAGA AGAGCATACA chrIV:366542-366622 47 1.45e-04 AAagagtgaa aagagaga gagagagaag chrIII:8988691-8988771 65 1.45e-04 CGGGGGGCAC AAGAGGAA TCGATAAA chrI:10097378-10097458 39 1.45e-04 atgaaaacga aagaggaa aaggaaCAAA chrIV:5582398-5582478 25 1.45e-04 atacaaacag aagagaga gacgagagac chrIII:3619781-3619861 38 1.45e-04 ACAGTGAAAG AAGAGAGA AGACAAAAAC chrII:8796576-8796656 11 1.71e-04 gagagagaga gagagaga ATAGGCGGAC chrI:5140362-5140442 64 1.71e-04 aaaagagtca gagagaga gatggagag chrI:5544051-5544131 28 1.71e-04 GAGCCGCCAG GAGAGGAA CAAGCTCACT chrII:5725244-5725324 34 1.71e-04 GTTGCTCACG GAGAGAGA TAGAAACGCC chrIV:5586468-5586548 18 1.71e-04 CTGGTAAAGT GAGAGAGA TGAGGAacac chrII:14036906-14036986 73 1.86e-04 AGACACTAGT AAGAAGGA chrIV:5100269-5100349 67 1.86e-04 TGCGCAGTAG AAGAAGGA AAATga chrIV:8762607-8762687 2 1.99e-04 A GAGAAGGA GACTTCTGGA chrIV:5960072-5960152 12 1.99e-04 GGCGTCGGCA GAGAAGGA ATTGAAAATG chrIV:14272675-14272755 7 2.12e-04 CTCTCA AAGAGGGA GAGAGTGGAC chrX:8017586-8017666 68 2.40e-04 CCCTCACCCA CAGAAAAA ATACC chrIII:764572-764652 39 2.40e-04 GAAAGACGAC CAGAAAAA CGACGACGAC chrIV:13272617-13272697 64 2.40e-04 AGAAGAGACG CAGAAAAA TGCATTGGG chrX:9668704-9668784 4 2.40e-04 TCA GAGAGGGA CGCGTGTGCG chrIII:5950046-5950126 64 2.56e-04 CATTTCCTCC AAAAAAAA AAATCTTCG chrIII:11336258-11336338 41 2.56e-04 AATACACACA AAAAAAAA CCGCCGACGC chrIII:11834387-11834467 12 2.56e-04 AACAACAACA AAAAAAAA GAGAACAGCT chrX:16145415-16145495 1 2.56e-04 . AAAAAAAA TCGTTTTGGC chrIV:10062900-10062980 1 2.87e-04 . GAAAAAAA GAAAAGAAAA chrI:6611346-6611426 69 2.87e-04 GCAGACGATA AAGAAAAG CACT chrIII:12472687-12472767 49 3.15e-04 CTGAGAGACG CAGAGAAA CATGGAAAGT chrX:4017741-4017821 62 3.15e-04 GAAGTGGTCG GAGAAAAG GAAGTGGTTC chrII:8131543-8131623 36 3.15e-04 TCCGGGCGCG CAGAGAAA CGAGACAACA chrV:10041600-10041680 2 3.31e-04 A AAAAGAAA CACGATGTGT chrX:10768011-10768091 63 3.59e-04 CACTCCCGAG GAAAGAAA GGGGGAGAAT chrI:9598349-9598429 58 3.59e-04 AAGTTGAACC AAGAGAAG AGTCACTTGG chrII:7327127-7327207 21 4.02e-04 AGGAGGGAGC GAGAGAAG CTTGGCGACT chrIII:3220463-3220543 22 4.02e-04 GTGAGCTATT CAGAAGAA ATCCTCTGCG chrIII:11334485-11334565 61 4.02e-04 CGTGAGAGTT GAGAGAAG CTATGTATCC chrII:1085081-1085161 61 4.33e-04 CCTCGTCATC AAAAAGAA GCCTGCGTCT chrIII:5757726-5757806 16 4.33e-04 TTTTTTCAAC AAAAAGAA TGCTATCATC chrII:2748404-2748484 21 4.33e-04 AGCCAATCTG AAAAAAGA GACGCAGACA chrIII:6695350-6695430 16 4.90e-04 GCCGGAGAGC AAGAAGAG GAGGAGGAGC chrV:7980481-7980561 67 4.90e-04 CGGACAAGCA GAAAAAGA GTGGCC chrV:5047386-5047466 66 5.44e-04 GTGAAATGCG CAGAGAGA GCGCAGA chrIII:3681602-3681682 57 5.44e-04 ttataatAAC CAGAGAGA GGCCAGTAGC chrIV:10869086-10869166 72 5.44e-04 CGACAGACGG GAGAAAGG G chrI:5057050-5057130 28 5.74e-04 AAGAAAACTG AAAAGAGA ATGACTTTAA chrI:1053724-1053804 68 5.74e-04 CACGCTGTGT AAAAGAGA CGCGC chrX:13147267-13147347 44 6.68e-04 CAATGGCGGC GAGAGAGG GGCACATTCG chrIII:4656550-4656630 2 6.83e-04 T AAAAAGGA GAACCACACA chrX:8157288-8157368 40 7.36e-04 AAGCAACAAG GAGAAGGG AGAATTTGGC chrII:6843922-6844002 58 7.92e-04 GGTCGGCCGG CAAAAAAA TGTCGCACCT chrX:11899226-11899306 60 7.92e-04 TTATCGCCTG AAGAGGGG AAACCGAACG chrX:5368380-5368460 46 7.92e-04 GATGAGAGCG AAGAGGGG CCAGACCGGG chrII:5901752-5901832 40 8.18e-04 CTGCAAAAAT GAGAGGGG AGCGAGGTGG chrX:8806526-8806606 14 8.18e-04 GGAGCGAACA GAGAGGGG AGGCGCAGAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAGARRAA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:759929-760009 1.5e-05 52_[+1]_20 chrIV:5598872-5598952 1.5e-05 41_[+1]_31 chrI:8761972-8762052 1.5e-05 63_[+1]_9 chrV:14143760-14143840 1.5e-05 69_[+1]_3 chrIV:14260978-14261058 1.5e-05 72_[+1] chrI:10040186-10040266 1.5e-05 69_[+1]_3 chrX:15342369-15342449 1.5e-05 67_[+1]_5 chrV:9964389-9964469 3e-05 44_[+1]_28 chrIV:10344849-10344929 3e-05 19_[+1]_53 chrI:316523-316603 3e-05 5_[+1]_67 chrIV:8040774-8040854 3e-05 3_[+1]_69 chrV:9978614-9978694 3e-05 48_[+1]_24 chrII:5276866-5276946 3e-05 60_[+1]_12 chrV:6538454-6538534 3e-05 70_[+1]_2 chrI:12548144-12548224 3e-05 18_[+1]_54 chrV:8518419-8518499 3e-05 49_[+1]_23 chrV:6030634-6030714 4.5e-05 51_[+1]_21 chrI:9516134-9516214 4.5e-05 67_[+1]_5 chrIII:8867580-8867660 4.5e-05 32_[+1]_40 chrIV:13453643-13453723 4.5e-05 23_[+1]_49 chrV:10904988-10905068 4.5e-05 6_[+1]_66 chrX:2807505-2807585 4.5e-05 67_[+1]_5 chrV:7216075-7216155 5.9e-05 36_[+1]_36 chrV:6658899-6658979 5.9e-05 59_[+1]_13 chrIII:5845616-5845696 5.9e-05 63_[+1]_9 chrIV:17293874-17293954 5.9e-05 51_[+1]_21 chrIV:12651737-12651817 5.9e-05 59_[+1]_13 chrIII:4063923-4064003 5.9e-05 61_[+1]_11 chrIV:5103501-5103581 5.9e-05 60_[+1]_12 chrV:20789230-20789310 8.9e-05 5_[+1]_67 chrIV:4034987-4035067 8.9e-05 39_[+1]_33 chrIV:7663195-7663275 8.9e-05 10_[+1]_62 chrI:4909122-4909202 8.9e-05 33_[+1]_39 chrV:15075066-15075146 8.9e-05 70_[+1]_2 chrIII:9905419-9905499 8.9e-05 17_[+1]_55 chrV:9561934-9562014 8.9e-05 13_[+1]_59 chrI:7421429-7421509 8.9e-05 55_[+1]_17 chrIV:4570693-4570773 8.9e-05 54_[+1]_18 chrX:14640016-14640096 8.9e-05 39_[+1]_33 chrII:4456136-4456216 8.9e-05 52_[+1]_20 chrII:6808669-6808749 8.9e-05 52_[+1]_20 chrII:11621761-11621841 8.9e-05 39_[+1]_33 chrI:1807997-1808077 8.9e-05 14_[+1]_58 chrV:14006918-14006998 8.9e-05 6_[+1]_66 chrIV:11765609-11765689 0.00012 9_[+1]_63 chrV:4063717-4063797 0.00012 52_[+1]_20 chrII:7758565-7758645 0.00012 53_[+1]_19 chrV:4860647-4860727 0.00012 71_[+1]_1 chrV:10722033-10722113 0.00012 68_[+1]_4 chrX:15386096-15386176 0.00012 25_[+1]_47 chrIV:10819077-10819157 0.00012 33_[+1]_39 chrV:11075780-11075860 0.00012 49_[+1]_23 chrIII:3984265-3984345 0.00012 15_[+1]_57 chrI:10237401-10237481 0.00014 52_[+1]_20 chrIV:366542-366622 0.00014 46_[+1]_26 chrIII:8988691-8988771 0.00014 64_[+1]_8 chrI:10097378-10097458 0.00014 38_[+1]_34 chrIV:5582398-5582478 0.00014 24_[+1]_48 chrIII:3619781-3619861 0.00014 37_[+1]_35 chrII:8796576-8796656 0.00017 10_[+1]_62 chrI:5140362-5140442 0.00017 63_[+1]_9 chrI:5544051-5544131 0.00017 27_[+1]_45 chrII:5725244-5725324 0.00017 33_[+1]_39 chrIV:5586468-5586548 0.00017 17_[+1]_55 chrII:14036906-14036986 0.00019 72_[+1] chrIV:5100269-5100349 0.00019 66_[+1]_6 chrIV:8762607-8762687 0.0002 1_[+1]_71 chrIV:5960072-5960152 0.0002 11_[+1]_61 chrIV:14272675-14272755 0.00021 6_[+1]_66 chrX:8017586-8017666 0.00024 67_[+1]_5 chrIII:764572-764652 0.00024 38_[+1]_34 chrIV:13272617-13272697 0.00024 63_[+1]_9 chrX:9668704-9668784 0.00024 3_[+1]_69 chrIII:5950046-5950126 0.00026 63_[+1]_9 chrIII:11336258-11336338 0.00026 40_[+1]_32 chrIII:11834387-11834467 0.00026 11_[+1]_61 chrX:16145415-16145495 0.00026 [+1]_72 chrIV:10062900-10062980 0.00029 [+1]_72 chrI:6611346-6611426 0.00029 68_[+1]_4 chrIII:12472687-12472767 0.00032 48_[+1]_24 chrX:4017741-4017821 0.00032 61_[+1]_11 chrII:8131543-8131623 0.00032 35_[+1]_37 chrV:10041600-10041680 0.00033 1_[+1]_71 chrX:10768011-10768091 0.00036 62_[+1]_10 chrI:9598349-9598429 0.00036 57_[+1]_15 chrII:7327127-7327207 0.0004 20_[+1]_52 chrIII:3220463-3220543 0.0004 21_[+1]_51 chrIII:11334485-11334565 0.0004 60_[+1]_12 chrII:1085081-1085161 0.00043 60_[+1]_12 chrIII:5757726-5757806 0.00043 15_[+1]_57 chrII:2748404-2748484 0.00043 20_[+1]_52 chrIII:6695350-6695430 0.00049 15_[+1]_57 chrV:7980481-7980561 0.00049 66_[+1]_6 chrV:5047386-5047466 0.00054 65_[+1]_7 chrIII:3681602-3681682 0.00054 56_[+1]_16 chrIV:10869086-10869166 0.00054 71_[+1]_1 chrI:5057050-5057130 0.00057 27_[+1]_45 chrI:1053724-1053804 0.00057 67_[+1]_5 chrX:13147267-13147347 0.00067 43_[+1]_29 chrIII:4656550-4656630 0.00068 1_[+1]_71 chrX:8157288-8157368 0.00074 39_[+1]_33 chrII:6843922-6844002 0.00079 57_[+1]_15 chrX:11899226-11899306 0.00079 59_[+1]_13 chrX:5368380-5368460 0.00079 45_[+1]_27 chrII:5901752-5901832 0.00082 39_[+1]_33 chrX:8806526-8806606 0.00082 13_[+1]_59 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAGARRAA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RAGARRAA width=8 seqs=106 chrII:759929-760009 ( 53) AAGAAAAA 1 chrIV:5598872-5598952 ( 42) AAGAAAAA 1 chrI:8761972-8762052 ( 64) AAGAAAAA 1 chrV:14143760-14143840 ( 70) AAGAAAAA 1 chrIV:14260978-14261058 ( 73) AAGAAAAA 1 chrI:10040186-10040266 ( 70) AAGAAAAA 1 chrX:15342369-15342449 ( 68) AAGAAAAA 1 chrV:9964389-9964469 ( 45) GAGAAAAA 1 chrIV:10344849-10344929 ( 20) GAGAAAAA 1 chrI:316523-316603 ( 6) GAGAAAAA 1 chrIV:8040774-8040854 ( 4) GAGAAAAA 1 chrV:9978614-9978694 ( 49) GAGAAAAA 1 chrII:5276866-5276946 ( 61) GAGAAAAA 1 chrV:6538454-6538534 ( 71) GAGAAAAA 1 chrI:12548144-12548224 ( 19) GAGAAAAA 1 chrV:8518419-8518499 ( 50) GAGAAAAA 1 chrV:6030634-6030714 ( 52) AAGAGAAA 1 chrI:9516134-9516214 ( 68) AAGAGAAA 1 chrIII:8867580-8867660 ( 33) AAGAGAAA 1 chrIV:13453643-13453723 ( 24) AAGAGAAA 1 chrV:10904988-10905068 ( 7) AAGAGAAA 1 chrX:2807505-2807585 ( 68) AAGAGAAA 1 chrV:7216075-7216155 ( 37) GAGAGAAA 1 chrV:6658899-6658979 ( 60) GAGAGAAA 1 chrIII:5845616-5845696 ( 64) GAGAGAAA 1 chrIV:17293874-17293954 ( 52) GAGAGAAA 1 chrIV:12651737-12651817 ( 60) GAGAGAAA 1 chrIII:4063923-4064003 ( 62) GAGAGAAA 1 chrIV:5103501-5103581 ( 61) GAGAGAAA 1 chrV:20789230-20789310 ( 6) AAGAAGAA 1 chrIV:4034987-4035067 ( 40) AAGAAGAA 1 chrIV:7663195-7663275 ( 11) AAGAAGAA 1 chrI:4909122-4909202 ( 34) AAGAAGAA 1 chrV:15075066-15075146 ( 71) AAGAAGAA 1 chrIII:9905419-9905499 ( 18) AAGAAGAA 1 chrV:9561934-9562014 ( 14) AAGAAGAA 1 chrI:7421429-7421509 ( 56) AAGAAGAA 1 chrIV:4570693-4570773 ( 55) AAGAAAGA 1 chrX:14640016-14640096 ( 40) AAGAAGAA 1 chrII:4456136-4456216 ( 53) AAGAAGAA 1 chrII:6808669-6808749 ( 53) AAGAAGAA 1 chrII:11621761-11621841 ( 40) AAGAAGAA 1 chrI:1807997-1808077 ( 15) AAGAAGAA 1 chrV:14006918-14006998 ( 7) AAGAAGAA 1 chrIV:11765609-11765689 ( 10) GAGAAAGA 1 chrV:4063717-4063797 ( 53) GAGAAAGA 1 chrII:7758565-7758645 ( 54) GAGAAAGA 1 chrV:4860647-4860727 ( 72) GAGAAGAA 1 chrV:10722033-10722113 ( 69) GAGAAAGA 1 chrX:15386096-15386176 ( 26) GAGAAAGA 1 chrIV:10819077-10819157 ( 34) GAGAAGAA 1 chrV:11075780-11075860 ( 50) GAGAAGAA 1 chrIII:3984265-3984345 ( 16) GAGAAAGA 1 chrI:10237401-10237481 ( 53) AAGAGAGA 1 chrIV:366542-366622 ( 47) AAGAGAGA 1 chrIII:8988691-8988771 ( 65) AAGAGGAA 1 chrI:10097378-10097458 ( 39) AAGAGGAA 1 chrIV:5582398-5582478 ( 25) AAGAGAGA 1 chrIII:3619781-3619861 ( 38) AAGAGAGA 1 chrII:8796576-8796656 ( 11) GAGAGAGA 1 chrI:5140362-5140442 ( 64) GAGAGAGA 1 chrI:5544051-5544131 ( 28) GAGAGGAA 1 chrII:5725244-5725324 ( 34) GAGAGAGA 1 chrIV:5586468-5586548 ( 18) GAGAGAGA 1 chrII:14036906-14036986 ( 73) AAGAAGGA 1 chrIV:5100269-5100349 ( 67) AAGAAGGA 1 chrIV:8762607-8762687 ( 2) GAGAAGGA 1 chrIV:5960072-5960152 ( 12) GAGAAGGA 1 chrIV:14272675-14272755 ( 7) AAGAGGGA 1 chrX:8017586-8017666 ( 68) CAGAAAAA 1 chrIII:764572-764652 ( 39) CAGAAAAA 1 chrIV:13272617-13272697 ( 64) CAGAAAAA 1 chrX:9668704-9668784 ( 4) GAGAGGGA 1 chrIII:5950046-5950126 ( 64) AAAAAAAA 1 chrIII:11336258-11336338 ( 41) AAAAAAAA 1 chrIII:11834387-11834467 ( 12) AAAAAAAA 1 chrX:16145415-16145495 ( 1) AAAAAAAA 1 chrIV:10062900-10062980 ( 1) GAAAAAAA 1 chrI:6611346-6611426 ( 69) AAGAAAAG 1 chrIII:12472687-12472767 ( 49) CAGAGAAA 1 chrX:4017741-4017821 ( 62) GAGAAAAG 1 chrII:8131543-8131623 ( 36) CAGAGAAA 1 chrV:10041600-10041680 ( 2) AAAAGAAA 1 chrX:10768011-10768091 ( 63) GAAAGAAA 1 chrI:9598349-9598429 ( 58) AAGAGAAG 1 chrII:7327127-7327207 ( 21) GAGAGAAG 1 chrIII:3220463-3220543 ( 22) CAGAAGAA 1 chrIII:11334485-11334565 ( 61) GAGAGAAG 1 chrII:1085081-1085161 ( 61) AAAAAGAA 1 chrIII:5757726-5757806 ( 16) AAAAAGAA 1 chrII:2748404-2748484 ( 21) AAAAAAGA 1 chrIII:6695350-6695430 ( 16) AAGAAGAG 1 chrV:7980481-7980561 ( 67) GAAAAAGA 1 chrV:5047386-5047466 ( 66) CAGAGAGA 1 chrIII:3681602-3681682 ( 57) CAGAGAGA 1 chrIV:10869086-10869166 ( 72) GAGAAAGG 1 chrI:5057050-5057130 ( 28) AAAAGAGA 1 chrI:1053724-1053804 ( 68) AAAAGAGA 1 chrX:13147267-13147347 ( 44) GAGAGAGG 1 chrIII:4656550-4656630 ( 2) AAAAAGGA 1 chrX:8157288-8157368 ( 40) GAGAAGGG 1 chrII:6843922-6844002 ( 58) CAAAAAAA 1 chrX:11899226-11899306 ( 60) AAGAGGGG 1 chrX:5368380-5368460 ( 46) AAGAGGGG 1 chrII:5901752-5901832 ( 40) GAGAGGGG 1 chrX:8806526-8806606 ( 14) GAGAGGGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAGARRAA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.54487 E= 1.6e-053 99 -153 79 -1337 199 -1337 -1337 -1337 -83 -1337 184 -1337 199 -1337 -1337 -1337 126 -1337 73 -1337 139 -1337 50 -1337 141 -1337 46 -1337 180 -1337 -97 -1337 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAGARRAA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 106 E= 1.6e-053 0.500000 0.084906 0.415094 0.000000 1.000000 0.000000 0.000000 0.000000 0.141509 0.000000 0.858491 0.000000 1.000000 0.000000 0.000000 0.000000 0.603774 0.000000 0.396226 0.000000 0.660377 0.000000 0.339623 0.000000 0.669811 0.000000 0.330189 0.000000 0.877358 0.000000 0.122642 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAGARRAA MEME-1 regular expression -------------------------------------------------------------------------------- [AG]AGA[AG][AG][AG]A -------------------------------------------------------------------------------- Time 7.41 secs. ******************************************************************************** ******************************************************************************** MOTIF TTYTCTCT MEME-2 width = 8 sites = 89 llr = 647 E-value = 8.4e-025 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTYTCTCT MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C 21328:81 probability G 1::::::: matrix T 79782a29 bits 2.1 1.9 * 1.6 * * 1.4 * *** Relative 1.2 * ***** Entropy 1.0 ******* (10.5 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TTTTCTCT consensus CCT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTYTCTCT MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIII:3857214-3857294 60 2.00e-05 cccgtgtttg ttttctct tgtttttcac chrI:6435873-6435953 32 2.00e-05 TTTTCCCCTT TTTTCTCT CCCTCACTTC chrIV:659787-659867 4 2.00e-05 AAC TTTTCTCT CTCGTGTCAC chrV:619194-619274 73 2.00e-05 TGCCAGCCGT TTTTCTCT chrIII:4323300-4323380 63 2.00e-05 AGCTGTGTCT TTTTCTCT AACCTCTCTC chrIV:6806746-6806826 24 2.00e-05 CTTTTTCTGT TTTTCTCT GCCTGCTCCC chrIII:3681602-3681682 12 2.00e-05 TGGTCGCCTC TTTTCTCT GTGttattat chrII:6994911-6994991 58 2.00e-05 ATCTCTATCT TTTTCTCT TTTCTCTTCC chrIV:5588555-5588635 35 2.00e-05 CCTTGAAATC TTTTCTCT GTCGTATCTT chrI:10839191-10839271 70 2.00e-05 AGCAGAGATG TTTTCTCT CGT chrX:7284850-7284930 40 2.00e-05 GCACGACTAC Ttttctct ctctgcttgt chrI:9430714-9430794 66 2.00e-05 tctcttttta ttttcTCT CCTCTCT chrI:2727649-2727729 50 2.00e-05 CTCTCCACAT TTTTCTCT CTTTATTCTT chrIII:1786007-1786087 9 2.00e-05 CACTCGTT TTTTCTCT TCTTTTCTGC chrV:14006918-14006998 63 2.00e-05 tctattcact ttttctct atttctctct chrIV:5103501-5103581 6 2.00e-05 AAACA TTTtctct ctcaattctc chrI:9322613-9322693 57 2.00e-05 GCCTATGCTA TTTTCTCT GTTCTCTTTT chrII:7838773-7838853 53 3.88e-05 ctctctatgt ttctctct ttctctaaat chrII:7887477-7887557 9 3.88e-05 TTTCGCAA TTCTCTCT AGCACGTCTC chrI:3806669-3806749 30 3.88e-05 CAGTAGCCTC TTCTCTCT CTCACTTTTT chrIII:7723803-7723883 20 3.88e-05 GTAGCTCTCT TTCTCTCT TTCTCTATCT chrIV:6958828-6958908 32 3.88e-05 Atcttcctct ttctctct ctttctatgt chrX:5847448-5847528 10 3.88e-05 CCGAACTAC TTCTCTCT TTCATTGCGC chrV:15075066-15075146 7 3.88e-05 tcttct ttctctct gttctCTACA chrIII:4950592-4950672 2 3.88e-05 T TTCTCTCT ATCCATCTTT chrIV:8587246-8587326 3 9.76e-05 CC CTTTCTCT TTATATCTGC chrI:316523-316603 21 9.76e-05 AAACCGAAAA TTTCCTCT TTTTTCGATG chrIII:13348021-13348101 29 9.76e-05 CGGTCCCTCA TTTCCTCT TCCTGACGAC chrIII:9698849-9698929 62 9.76e-05 TCTGTGCCTC TTTTTTCT ATGTTTCTCT chrX:1479364-1479444 73 9.76e-05 CCTCTCTTGT TTTTTTCT chrII:3209423-3209503 37 9.76e-05 ATTCTATGTT CTTTCTCT CCTGCGTCTA chrIII:6695350-6695430 69 9.76e-05 TCTATCTCTA TTTCCTCT CAAA chrIV:5941446-5941526 63 9.76e-05 TTTTTGTTGT TTTTTTCT GTGTTCACTT chrIV:5081210-5081290 31 9.76e-05 TTGCTCCATC CTTTCTCT TCATCTATCC chrIV:8758755-8758835 43 1.16e-04 ACTCGCTCTC GTTTCTCT AAGTCTCTTC chrIV:4034987-4035067 66 1.16e-04 TCGTCGCCAA GTTTCTCT GTACGTC chrIII:4335781-4335861 4 1.16e-04 CCC GTTTCTCT GCATTCCTAT chrV:12819300-12819380 45 1.16e-04 CTACGCCGTC GTTTCTCT GAATATTTAT chrII:7390467-7390547 12 1.56e-04 TGTTTCGTCT TCTTCTCT TCATGCCCCC chrV:10677617-10677697 47 1.56e-04 CGGTGCCCCA TTTTCTTT TGCTCCAAGA chrII:15190142-15190222 18 1.56e-04 cctccatctt tcttctct tacttccgtc chrX:13502515-13502595 40 1.56e-04 TTCCTCCTAT TTTTCTTT TACGGAATAT chrV:810576-810656 23 2.11e-04 CATCCATCCG CTCTCTCT CACTCTCCCC chrX:15376718-15376798 26 2.11e-04 AActctccct ctctctct ctatctctct chrX:6971478-6971558 49 2.11e-04 ACATTTTTCC TTCTTTCT ATGGTGAGGC chrII:8786025-8786105 22 2.11e-04 TGCTGTGGCT TTCTTTCT TGTCCCACGG chrIV:366542-366622 1 2.11e-04 . CTCTCTCT ATATATATTC chrIV:11871285-11871365 26 2.11e-04 ctcttctttc ttctttct tctCATTCGC chrV:8040585-8040665 3 2.28e-04 AG GTCTCTCT CCTTTATTCC chrIII:4063923-4064003 24 2.28e-04 CGCCGCCCGT GTCTCTCT GTCTATGTCG chrI:13351128-13351208 47 2.28e-04 ATCTCTCTCG GTCTCTCT CGGTTTACAC chrI:4311740-4311820 49 2.66e-04 TATGTCTGGG TTCTCTTT AACTTTCAGC chrIV:1842451-1842531 29 2.66e-04 TGTTTATCCC TCCTCTCT GTCTCTAACT chrIV:4211043-4211123 61 2.66e-04 CCACGGCGGC TCCTCTCT CGCTGCTCCG chrX:12656807-12656887 46 2.66e-04 GCACCGCCCG TTCTCTTT TCCTCCCTGT chrIV:14272675-14272755 56 2.84e-04 ttcttctcct ttttctcc ttcttctgct chrX:6740499-6740579 31 2.84e-04 CCCCCCCTCG TTTTCTCC ATGTGAAGAC chrII:12378971-12379051 53 2.84e-04 AGAACCCCCC TTTTCTCC CAGGAGGGGG chrX:2191993-2192073 41 3.42e-04 TTATAAGAGC TTTCTTCT ACTCCTATTT chrIV:12651737-12651817 7 3.42e-04 TGTCAT CTTCCTCT TGTTTTGAAG chrV:1943632-1943712 52 3.42e-04 CGcctttctt cttcctct tctttcctca chrIV:5597504-5597584 13 3.42e-04 TCTTCAGCTT CTTCCTCT TCCATCAGAC chrI:5375401-5375481 33 3.79e-04 AACTCGCATC GTTTTTCT AGTTCCTTGC chrV:20879460-20879540 61 4.97e-04 CCTATTTCAA TTTTTTTT ACTCTTCATC chrI:6438588-6438668 39 4.97e-04 GCAGAGCCCA TCTCCTCT TCAATCGCCG chrII:9729910-9729990 27 4.97e-04 CCACAGTCGT TTTTTTTT CGAACCTCTT chrIII:13349182-13349262 52 4.97e-04 AAATTCATCG TTTCCTTT GTTTTCGCCC chrI:1598582-1598662 53 4.97e-04 GTCTTCTACT TTTTTTTT TGCTCGCTGC chrIV:5588343-5588423 28 4.97e-04 CCTTGTTTTG TTTTTTTT TTCAGCGTGT chrII:3810682-3810762 14 5.14e-04 TTTTCTATAA TTCTCTCC CAGTTTTCTT chrI:8761972-8762052 18 5.51e-04 CGTCTTTCCT GCTTCTCT ACTTCTCTAG chrV:6350239-6350319 24 5.51e-04 GCTCGCCCGA GCTTCTCT TCCATGCTCT chrIV:12584309-12584389 6 5.51e-04 TGCGT GCTTCTCT TATTCTCCCT chrI:8792463-8792543 42 6.25e-04 TCGCAGCCTT TTCCTTCT AGTGTCGGCC chrII:7892033-7892113 51 6.25e-04 ATTCTATTCA TCTTCTTT TCCTCCGTCC chrIII:5950046-5950126 34 7.69e-04 GCGACGGCGG CTCTCTTT TTTCGTTTTT chrV:14930256-14930336 10 7.69e-04 TTTTTCACA TTCTTTTT CATTTCTCGT chrIII:12942481-12942561 9 7.69e-04 CCCCTGGC TCCCCTCT TTGAGCAAGG chrII:10016160-10016240 65 7.69e-04 CTCTATCTTC CCCTCTCT TCATTTGT chrI:2126788-2126868 68 7.69e-04 gtgtgtTGCA TTCCCTTT TTCGT chrX:16145415-16145495 44 7.69e-04 CTACTTCTTC TTCCCTTT TCAAATGACA chrIV:7390262-7390342 67 7.69e-04 TGCCAGCTGG TCCCCTCT GCTTTT chrIII:8867580-8867660 64 8.59e-04 GAATGCCCGT GTCTCTTT CAAGCGGCG chrX:4218465-4218545 46 8.59e-04 ATGCTCTGCC TTTTTTCC CCGCTATTCC chrV:10862083-10862163 2 8.59e-04 t TTTTTTCC AATTTTTCGG chrI:14570101-14570181 67 9.13e-04 GTCTGAATCT CTTCTTCT TGGGCA chrII:2748404-2748484 73 9.13e-04 TAACGGACAG CTTCTTCT chrIII:7725107-7725187 34 9.13e-04 tcgtgcgctt cttcttct AGCGCGAGTC chrI:6611346-6611426 3 1.08e-03 CG CCTCCTCT GTGTCTCTTA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTYTCTCT MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:3857214-3857294 2e-05 59_[+2]_13 chrI:6435873-6435953 2e-05 31_[+2]_41 chrIV:659787-659867 2e-05 3_[+2]_69 chrV:619194-619274 2e-05 72_[+2] chrIII:4323300-4323380 2e-05 62_[+2]_10 chrIV:6806746-6806826 2e-05 23_[+2]_49 chrIII:3681602-3681682 2e-05 11_[+2]_61 chrII:6994911-6994991 2e-05 57_[+2]_15 chrIV:5588555-5588635 2e-05 34_[+2]_38 chrI:10839191-10839271 2e-05 69_[+2]_3 chrX:7284850-7284930 2e-05 39_[+2]_33 chrI:9430714-9430794 2e-05 65_[+2]_7 chrI:2727649-2727729 2e-05 49_[+2]_23 chrIII:1786007-1786087 2e-05 8_[+2]_64 chrV:14006918-14006998 2e-05 62_[+2]_10 chrIV:5103501-5103581 2e-05 5_[+2]_67 chrI:9322613-9322693 2e-05 56_[+2]_16 chrII:7838773-7838853 3.9e-05 52_[+2]_20 chrII:7887477-7887557 3.9e-05 8_[+2]_64 chrI:3806669-3806749 3.9e-05 29_[+2]_43 chrIII:7723803-7723883 3.9e-05 19_[+2]_53 chrIV:6958828-6958908 3.9e-05 31_[+2]_41 chrX:5847448-5847528 3.9e-05 9_[+2]_63 chrV:15075066-15075146 3.9e-05 6_[+2]_66 chrIII:4950592-4950672 3.9e-05 1_[+2]_71 chrIV:8587246-8587326 9.8e-05 2_[+2]_70 chrI:316523-316603 9.8e-05 20_[+2]_52 chrIII:13348021-13348101 9.8e-05 28_[+2]_44 chrIII:9698849-9698929 9.8e-05 61_[+2]_11 chrX:1479364-1479444 9.8e-05 72_[+2] chrII:3209423-3209503 9.8e-05 36_[+2]_36 chrIII:6695350-6695430 9.8e-05 68_[+2]_4 chrIV:5941446-5941526 9.8e-05 62_[+2]_10 chrIV:5081210-5081290 9.8e-05 30_[+2]_42 chrIV:8758755-8758835 0.00012 42_[+2]_30 chrIV:4034987-4035067 0.00012 65_[+2]_7 chrIII:4335781-4335861 0.00012 3_[+2]_69 chrV:12819300-12819380 0.00012 44_[+2]_28 chrII:7390467-7390547 0.00016 11_[+2]_61 chrV:10677617-10677697 0.00016 46_[+2]_26 chrII:15190142-15190222 0.00016 17_[+2]_55 chrX:13502515-13502595 0.00016 39_[+2]_33 chrV:810576-810656 0.00021 22_[+2]_50 chrX:15376718-15376798 0.00021 25_[+2]_47 chrX:6971478-6971558 0.00021 48_[+2]_24 chrII:8786025-8786105 0.00021 21_[+2]_51 chrIV:366542-366622 0.00021 [+2]_72 chrIV:11871285-11871365 0.00021 25_[+2]_47 chrV:8040585-8040665 0.00023 2_[+2]_70 chrIII:4063923-4064003 0.00023 23_[+2]_49 chrI:13351128-13351208 0.00023 46_[+2]_26 chrI:4311740-4311820 0.00027 48_[+2]_24 chrIV:1842451-1842531 0.00027 28_[+2]_44 chrIV:4211043-4211123 0.00027 60_[+2]_12 chrX:12656807-12656887 0.00027 45_[+2]_27 chrIV:14272675-14272755 0.00028 55_[+2]_17 chrX:6740499-6740579 0.00028 30_[+2]_42 chrII:12378971-12379051 0.00028 52_[+2]_20 chrX:2191993-2192073 0.00034 40_[+2]_32 chrIV:12651737-12651817 0.00034 6_[+2]_66 chrV:1943632-1943712 0.00034 51_[+2]_21 chrIV:5597504-5597584 0.00034 12_[+2]_60 chrI:5375401-5375481 0.00038 32_[+2]_40 chrV:20879460-20879540 0.0005 60_[+2]_12 chrI:6438588-6438668 0.0005 38_[+2]_34 chrII:9729910-9729990 0.0005 26_[+2]_46 chrIII:13349182-13349262 0.0005 51_[+2]_21 chrI:1598582-1598662 0.0005 52_[+2]_20 chrIV:5588343-5588423 0.0005 27_[+2]_45 chrII:3810682-3810762 0.00051 13_[+2]_59 chrI:8761972-8762052 0.00055 17_[+2]_55 chrV:6350239-6350319 0.00055 23_[+2]_49 chrIV:12584309-12584389 0.00055 5_[+2]_67 chrI:8792463-8792543 0.00062 41_[+2]_31 chrII:7892033-7892113 0.00062 50_[+2]_22 chrIII:5950046-5950126 0.00077 33_[+2]_39 chrV:14930256-14930336 0.00077 9_[+2]_63 chrIII:12942481-12942561 0.00077 8_[+2]_64 chrII:10016160-10016240 0.00077 64_[+2]_8 chrI:2126788-2126868 0.00077 67_[+2]_5 chrX:16145415-16145495 0.00077 43_[+2]_29 chrIV:7390262-7390342 0.00077 66_[+2]_6 chrIII:8867580-8867660 0.00086 63_[+2]_9 chrX:4218465-4218545 0.00086 45_[+2]_27 chrV:10862083-10862163 0.00086 1_[+2]_71 chrI:14570101-14570181 0.00091 66_[+2]_6 chrII:2748404-2748484 0.00091 72_[+2] chrIII:7725107-7725187 0.00091 33_[+2]_39 chrI:6611346-6611426 0.0011 2_[+2]_70 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTYTCTCT MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTYTCTCT width=8 seqs=89 chrIII:3857214-3857294 ( 60) TTTTCTCT 1 chrI:6435873-6435953 ( 32) TTTTCTCT 1 chrIV:659787-659867 ( 4) TTTTCTCT 1 chrV:619194-619274 ( 73) TTTTCTCT 1 chrIII:4323300-4323380 ( 63) TTTTCTCT 1 chrIV:6806746-6806826 ( 24) TTTTCTCT 1 chrIII:3681602-3681682 ( 12) TTTTCTCT 1 chrII:6994911-6994991 ( 58) TTTTCTCT 1 chrIV:5588555-5588635 ( 35) TTTTCTCT 1 chrI:10839191-10839271 ( 70) TTTTCTCT 1 chrX:7284850-7284930 ( 40) TTTTCTCT 1 chrI:9430714-9430794 ( 66) TTTTCTCT 1 chrI:2727649-2727729 ( 50) TTTTCTCT 1 chrIII:1786007-1786087 ( 9) TTTTCTCT 1 chrV:14006918-14006998 ( 63) TTTTCTCT 1 chrIV:5103501-5103581 ( 6) TTTTCTCT 1 chrI:9322613-9322693 ( 57) TTTTCTCT 1 chrII:7838773-7838853 ( 53) TTCTCTCT 1 chrII:7887477-7887557 ( 9) TTCTCTCT 1 chrI:3806669-3806749 ( 30) TTCTCTCT 1 chrIII:7723803-7723883 ( 20) TTCTCTCT 1 chrIV:6958828-6958908 ( 32) TTCTCTCT 1 chrX:5847448-5847528 ( 10) TTCTCTCT 1 chrV:15075066-15075146 ( 7) TTCTCTCT 1 chrIII:4950592-4950672 ( 2) TTCTCTCT 1 chrIV:8587246-8587326 ( 3) CTTTCTCT 1 chrI:316523-316603 ( 21) TTTCCTCT 1 chrIII:13348021-13348101 ( 29) TTTCCTCT 1 chrIII:9698849-9698929 ( 62) TTTTTTCT 1 chrX:1479364-1479444 ( 73) TTTTTTCT 1 chrII:3209423-3209503 ( 37) CTTTCTCT 1 chrIII:6695350-6695430 ( 69) TTTCCTCT 1 chrIV:5941446-5941526 ( 63) TTTTTTCT 1 chrIV:5081210-5081290 ( 31) CTTTCTCT 1 chrIV:8758755-8758835 ( 43) GTTTCTCT 1 chrIV:4034987-4035067 ( 66) GTTTCTCT 1 chrIII:4335781-4335861 ( 4) GTTTCTCT 1 chrV:12819300-12819380 ( 45) GTTTCTCT 1 chrII:7390467-7390547 ( 12) TCTTCTCT 1 chrV:10677617-10677697 ( 47) TTTTCTTT 1 chrII:15190142-15190222 ( 18) TCTTCTCT 1 chrX:13502515-13502595 ( 40) TTTTCTTT 1 chrV:810576-810656 ( 23) CTCTCTCT 1 chrX:15376718-15376798 ( 26) CTCTCTCT 1 chrX:6971478-6971558 ( 49) TTCTTTCT 1 chrII:8786025-8786105 ( 22) TTCTTTCT 1 chrIV:366542-366622 ( 1) CTCTCTCT 1 chrIV:11871285-11871365 ( 26) TTCTTTCT 1 chrV:8040585-8040665 ( 3) GTCTCTCT 1 chrIII:4063923-4064003 ( 24) GTCTCTCT 1 chrI:13351128-13351208 ( 47) GTCTCTCT 1 chrI:4311740-4311820 ( 49) TTCTCTTT 1 chrIV:1842451-1842531 ( 29) TCCTCTCT 1 chrIV:4211043-4211123 ( 61) TCCTCTCT 1 chrX:12656807-12656887 ( 46) TTCTCTTT 1 chrIV:14272675-14272755 ( 56) TTTTCTCC 1 chrX:6740499-6740579 ( 31) TTTTCTCC 1 chrII:12378971-12379051 ( 53) TTTTCTCC 1 chrX:2191993-2192073 ( 41) TTTCTTCT 1 chrIV:12651737-12651817 ( 7) CTTCCTCT 1 chrV:1943632-1943712 ( 52) CTTCCTCT 1 chrIV:5597504-5597584 ( 13) CTTCCTCT 1 chrI:5375401-5375481 ( 33) GTTTTTCT 1 chrV:20879460-20879540 ( 61) TTTTTTTT 1 chrI:6438588-6438668 ( 39) TCTCCTCT 1 chrII:9729910-9729990 ( 27) TTTTTTTT 1 chrIII:13349182-13349262 ( 52) TTTCCTTT 1 chrI:1598582-1598662 ( 53) TTTTTTTT 1 chrIV:5588343-5588423 ( 28) TTTTTTTT 1 chrII:3810682-3810762 ( 14) TTCTCTCC 1 chrI:8761972-8762052 ( 18) GCTTCTCT 1 chrV:6350239-6350319 ( 24) GCTTCTCT 1 chrIV:12584309-12584389 ( 6) GCTTCTCT 1 chrI:8792463-8792543 ( 42) TTCCTTCT 1 chrII:7892033-7892113 ( 51) TCTTCTTT 1 chrIII:5950046-5950126 ( 34) CTCTCTTT 1 chrV:14930256-14930336 ( 10) TTCTTTTT 1 chrIII:12942481-12942561 ( 9) TCCCCTCT 1 chrII:10016160-10016240 ( 65) CCCTCTCT 1 chrI:2126788-2126868 ( 68) TTCCCTTT 1 chrX:16145415-16145495 ( 44) TTCCCTTT 1 chrIV:7390262-7390342 ( 67) TCCCCTCT 1 chrIII:8867580-8867660 ( 64) GTCTCTTT 1 chrX:4218465-4218545 ( 46) TTTTTTCC 1 chrV:10862083-10862163 ( 2) TTTTTTCC 1 chrI:14570101-14570181 ( 67) CTTCTTCT 1 chrII:2748404-2748484 ( 73) CTTCTTCT 1 chrIII:7725107-7725187 ( 34) CTTCTTCT 1 chrI:6611346-6611426 ( 3) CCTCCTCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTYTCTCT MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.21773 E= 8.4e-025 -1312 -54 -83 141 -1312 -75 -1312 170 -1312 50 -1312 131 -1312 -28 -1312 160 -1312 168 -1312 -30 -1312 -1312 -1312 193 -1312 176 -1312 -64 -1312 -187 -1312 183 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTYTCTCT MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 89 E= 8.4e-025 0.000000 0.168539 0.134831 0.696629 0.000000 0.146067 0.000000 0.853933 0.000000 0.348315 0.000000 0.651685 0.000000 0.202247 0.000000 0.797753 0.000000 0.786517 0.000000 0.213483 0.000000 0.000000 0.000000 1.000000 0.000000 0.831461 0.000000 0.168539 0.000000 0.067416 0.000000 0.932584 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTYTCTCT MEME-2 regular expression -------------------------------------------------------------------------------- TT[TC][TC][CT]TCT -------------------------------------------------------------------------------- Time 11.04 secs. ******************************************************************************** ******************************************************************************** MOTIF CTGCGTCT MEME-3 width = 8 sites = 15 llr = 166 E-value = 6.1e-008 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTGCGTCT MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C a::a::a: probability G ::a:a::: matrix T :a:::a:a bits 2.1 * *** * 1.9 ******** 1.6 ******** 1.4 ******** Relative 1.2 ******** Entropy 1.0 ******** (16.0 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CTGCGTCT consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCGTCT MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrII:1085081-1085161 71 1.56e-05 AAAAAGAAGC CTGCGTCT CT chrII:759929-760009 17 1.56e-05 GCTCTCCCGT CTGCGTCT CGCATATTCC chrII:6993045-6993125 68 1.56e-05 CGTTTCATCT CTGCGTCT CGTTC chrV:20879460-20879540 39 1.56e-05 TCCATGTTTT CTGCGTCT CCAACCTATT chrV:619194-619274 35 1.56e-05 CATCCTCTCT CTGCGTCT CTTCTCCTCC chrIV:1842451-1842531 49 1.56e-05 CTCTAACTGT CTGCGTCT CTCACACAAC chrV:5502645-5502725 55 1.56e-05 gcgcattttt ctgcgtct tcataaTAAA chrV:14368346-14368426 51 1.56e-05 TCCGGGCATG CTGCGTCT CCACATGGCG chrII:11305786-11305866 44 1.56e-05 GGTCGAATCT CTGCGTCT CGCCAATTCA chrIII:7166823-7166903 14 1.56e-05 CTAGCATTGT CTGCGTCT CACGACTGCG chrII:3209423-3209503 46 1.56e-05 TCTTTCTCTC CTGCGTCT AGGTTCTCTC chrII:5948890-5948970 62 1.56e-05 TGGAGGTGCT CTGCGTCT CCACATTTCA chrIII:3220463-3220543 35 1.56e-05 AAGAAATCCT CTGCGTCT CTCGCCTCAC chrIII:11334485-11334565 32 1.56e-05 CCTTGTCACT CTGCGTCT TCTCGAGAGA chrV:10020116-10020196 15 1.56e-05 ACTTAGATGT CTGCGTCT CTAAGTTGTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCGTCT MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:1085081-1085161 1.6e-05 70_[+3]_2 chrII:759929-760009 1.6e-05 16_[+3]_56 chrII:6993045-6993125 1.6e-05 67_[+3]_5 chrV:20879460-20879540 1.6e-05 38_[+3]_34 chrV:619194-619274 1.6e-05 34_[+3]_38 chrIV:1842451-1842531 1.6e-05 48_[+3]_24 chrV:5502645-5502725 1.6e-05 54_[+3]_18 chrV:14368346-14368426 1.6e-05 50_[+3]_22 chrII:11305786-11305866 1.6e-05 43_[+3]_29 chrIII:7166823-7166903 1.6e-05 13_[+3]_59 chrII:3209423-3209503 1.6e-05 45_[+3]_27 chrII:5948890-5948970 1.6e-05 61_[+3]_11 chrIII:3220463-3220543 1.6e-05 34_[+3]_38 chrIII:11334485-11334565 1.6e-05 31_[+3]_41 chrV:10020116-10020196 1.6e-05 14_[+3]_58 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCGTCT MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTGCGTCT width=8 seqs=15 chrII:1085081-1085161 ( 71) CTGCGTCT 1 chrII:759929-760009 ( 17) CTGCGTCT 1 chrII:6993045-6993125 ( 68) CTGCGTCT 1 chrV:20879460-20879540 ( 39) CTGCGTCT 1 chrV:619194-619274 ( 35) CTGCGTCT 1 chrIV:1842451-1842531 ( 49) CTGCGTCT 1 chrV:5502645-5502725 ( 55) CTGCGTCT 1 chrV:14368346-14368426 ( 51) CTGCGTCT 1 chrII:11305786-11305866 ( 44) CTGCGTCT 1 chrIII:7166823-7166903 ( 14) CTGCGTCT 1 chrII:3209423-3209503 ( 46) CTGCGTCT 1 chrII:5948890-5948970 ( 62) CTGCGTCT 1 chrIII:3220463-3220543 ( 35) CTGCGTCT 1 chrIII:11334485-11334565 ( 32) CTGCGTCT 1 chrV:10020116-10020196 ( 15) CTGCGTCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCGTCT MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.1725 E= 6.1e-008 -1055 202 -1055 -1055 -1055 -1055 -1055 193 -1055 -1055 206 -1055 -1055 202 -1055 -1055 -1055 -1055 206 -1055 -1055 -1055 -1055 193 -1055 202 -1055 -1055 -1055 -1055 -1055 193 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCGTCT MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 15 E= 6.1e-008 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCGTCT MEME-3 regular expression -------------------------------------------------------------------------------- CTGCGTCT -------------------------------------------------------------------------------- Time 14.47 secs. ******************************************************************************** ******************************************************************************** MOTIF AGAGAGRG MEME-4 width = 8 sites = 50 llr = 395 E-value = 1.5e-007 ******************************************************************************** -------------------------------------------------------------------------------- Motif AGAGAGRG MEME-4 Description -------------------------------------------------------------------------------- Simplified A 7:7:a:52 pos.-specific C ::::::22 probability G :a:a:a36 matrix T 3:2::::: bits 2.1 * *** 1.9 * *** 1.6 * *** 1.4 * *** Relative 1.2 * *** Entropy 1.0 ****** (11.4 bits) 0.8 ****** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AGAGAGAG consensus T T GA sequence CC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAGAGRG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrV:7216075-7216155 66 1.34e-05 agagagaggg agagagag agagtga chrII:8796576-8796656 2 1.34e-05 g agagagag agagagagaA chrV:6538454-6538534 47 1.34e-05 AGGGAGAGAT AGAGAGAG GGTGGTGGAG chrIV:8762607-8762687 50 2.61e-05 GATGGGGGAC AGAGAGGG AGAGGGTTAA chrI:5140362-5140442 22 2.61e-05 AGCGGGGACT agagaggg agagagacat chrV:6030634-6030714 31 2.61e-05 taagagagat agagaggg agaagagaga chrX:2559563-2559643 54 2.61e-05 GCGCGTCGGC AGAGAGGG TGGAGGTCCC chrX:4982256-4982336 25 2.61e-05 ACAACAACAC AGAGAGGG CGCCCTCCCA chrX:15386096-15386176 39 2.61e-05 AAAGAGAGGG AGAGAGGG GCACCGCTGA chrV:14006918-14006998 32 2.61e-05 GACACGAATG AGAGAGGG GACCCGGctc chrII:2220021-2220101 1 5.31e-05 . AGAGAGCG AGAGGCGGCG chrI:9516134-9516214 24 5.31e-05 AAATTTTACG AGAGAGCG TACAGAGCGA chrIV:366542-366622 73 5.31e-05 agcggcggag tgagagag chrV:3717958-3718038 41 5.31e-05 AGCGAGACAT TGAGAGAG TGCTAGAGAA chrI:7421429-7421509 41 5.31e-05 AATAGGGGGT AGAGAGCG GGAGCAGAAG chrIII:11334485-11334565 45 5.31e-05 CGTCTTCTCG AGAGAGCG TGAGAGTTGA chrV:14930256-14930336 44 8.08e-05 CTTCTTTGTG AGTGAGAG TGTGCTGTGA chrIII:8867580-8867660 7 8.08e-05 AGGAAA AGAGAGAC GAACTATATT chrIV:5598872-5598952 67 8.08e-05 CAAGAGAATA AGTGAGAG ACAAAG chrIV:8040774-8040854 62 8.08e-05 ATTGAGAGAT AGAGAGAC GAAAAGATGC chrIV:7391628-7391708 13 8.08e-05 TTTCATAAGT AGAGAGAC TTTTCATCTT chrIV:4034987-4035067 20 9.49e-05 GGAGTCTGGC AGAGAGAA AGAGAGGAGA chrV:15075066-15075146 62 9.49e-05 TCAGAGAGAC AGAGAGAA TAAGAAGAAG chrIV:12651737-12651817 43 9.49e-05 CTATTCgagg agagagaa aatgagagag chrV:9561934-9562014 73 9.49e-05 GGAGTGAGGA AGAGAGAA chrIII:3619781-3619861 21 9.49e-05 GGGCGCCGAT AGAGAGAA CAGTGAAAGA chrX:16202303-16202383 33 1.08e-04 GACAGAGAAT TGAGAGGG GGAAAAGAGC chrV:11075780-11075860 31 1.08e-04 AGAAAAAAGA TGAGAGGG GAGAATGGCG chrI:14939938-14940018 71 1.22e-04 TGCCGAGCCA TGAGAGCG AG chrX:5368380-5368460 38 1.22e-04 ATGTGGGTGA TGAGAGCG AAGAGGGGCC chrII:7887477-7887557 71 1.48e-04 ACTCACAGTG AGTGAGGG AG chrIII:7166823-7166903 46 1.48e-04 ATAGATGGGG AGTGAGGG GAGCCGCTCC chrI:9598349-9598429 24 1.48e-04 TGTATTGGTG AGTGAGGG TGGCCAAACA chrI:5057050-5057130 47 2.17e-04 TGACTTTAAA TGAGAGAC GGAGAGAATC chrI:4906706-4906786 19 2.17e-04 GAGTCGCGTA AGAGAGCC GCGCGCGCCG chrIII:12472687-12472767 40 2.17e-04 TAGTAAAAGC TGAGAGAC GCAGAGAAAC chrIV:15984349-15984429 40 2.17e-04 CGCCGCGAGT TGAGAGAC CGAATTAGTG chrV:4860647-4860727 36 2.17e-04 GGAAGGACGA TGTGAGAG TGAAGAGACG chrI:1053724-1053804 52 2.46e-04 GCGGCGGGCG AGAGAGCA CGCTGTGTAA chrV:14143760-14143840 22 2.46e-04 CAAGGAGATC TGAGAGAA ACTAGTGTTC chrX:2807505-2807585 51 2.46e-04 CCCTAAGCAT AGAGAGCA TGAGGAATTA chrIV:13272617-13272697 35 2.60e-04 TGGCAGACTG AGTGAGAC AGTACGTGAA chrII:14036906-14036986 6 3.02e-04 GACAT TGTGAGGG GCGCGCGCGC chrIV:10062900-10062980 23 3.16e-04 AGAAAATCGA TGAGAGGA CAGAGAGTTG chrX:8806526-8806606 53 3.44e-04 AGAGTGTGCG TGTGAGCG GCGATCGAGT chrI:5544051-5544131 13 3.85e-04 GTTGTTGTCG AGGGAGAG CCGCCAGGAG chrIV:10344849-10344929 4 3.85e-04 AGC agggagag gagcaaaaga chrIV:8587246-8587326 60 4.28e-04 CTCTTTGTTC TGTGAGAC ATGGACGAGT chrII:2748404-2748484 7 4.28e-04 CTGCTC AGTGAGCC AATCTGAAAA chrI:10040186-10040266 32 4.58e-04 CAAGTTGTCA TGTGAGAA ACAACATGAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAGAGRG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:7216075-7216155 1.3e-05 65_[+4]_7 chrII:8796576-8796656 1.3e-05 1_[+4]_71 chrV:6538454-6538534 1.3e-05 46_[+4]_26 chrIV:8762607-8762687 2.6e-05 49_[+4]_23 chrI:5140362-5140442 2.6e-05 21_[+4]_51 chrV:6030634-6030714 2.6e-05 30_[+4]_42 chrX:2559563-2559643 2.6e-05 53_[+4]_19 chrX:4982256-4982336 2.6e-05 24_[+4]_48 chrX:15386096-15386176 2.6e-05 38_[+4]_34 chrV:14006918-14006998 2.6e-05 31_[+4]_41 chrII:2220021-2220101 5.3e-05 [+4]_72 chrI:9516134-9516214 5.3e-05 23_[+4]_49 chrIV:366542-366622 5.3e-05 72_[+4] chrV:3717958-3718038 5.3e-05 40_[+4]_32 chrI:7421429-7421509 5.3e-05 40_[+4]_32 chrIII:11334485-11334565 5.3e-05 44_[+4]_28 chrV:14930256-14930336 8.1e-05 43_[+4]_29 chrIII:8867580-8867660 8.1e-05 6_[+4]_66 chrIV:5598872-5598952 8.1e-05 66_[+4]_6 chrIV:8040774-8040854 8.1e-05 61_[+4]_11 chrIV:7391628-7391708 8.1e-05 12_[+4]_60 chrIV:4034987-4035067 9.5e-05 19_[+4]_53 chrV:15075066-15075146 9.5e-05 61_[+4]_11 chrIV:12651737-12651817 9.5e-05 42_[+4]_30 chrV:9561934-9562014 9.5e-05 72_[+4] chrIII:3619781-3619861 9.5e-05 20_[+4]_52 chrX:16202303-16202383 0.00011 32_[+4]_40 chrV:11075780-11075860 0.00011 30_[+4]_42 chrI:14939938-14940018 0.00012 70_[+4]_2 chrX:5368380-5368460 0.00012 37_[+4]_35 chrII:7887477-7887557 0.00015 70_[+4]_2 chrIII:7166823-7166903 0.00015 45_[+4]_27 chrI:9598349-9598429 0.00015 23_[+4]_49 chrI:5057050-5057130 0.00022 46_[+4]_26 chrI:4906706-4906786 0.00022 18_[+4]_54 chrIII:12472687-12472767 0.00022 39_[+4]_33 chrIV:15984349-15984429 0.00022 39_[+4]_33 chrV:4860647-4860727 0.00022 35_[+4]_37 chrI:1053724-1053804 0.00025 51_[+4]_21 chrV:14143760-14143840 0.00025 21_[+4]_51 chrX:2807505-2807585 0.00025 50_[+4]_22 chrIV:13272617-13272697 0.00026 34_[+4]_38 chrII:14036906-14036986 0.0003 5_[+4]_67 chrIV:10062900-10062980 0.00032 22_[+4]_50 chrX:8806526-8806606 0.00034 52_[+4]_20 chrI:5544051-5544131 0.00039 12_[+4]_60 chrIV:10344849-10344929 0.00039 3_[+4]_69 chrIV:8587246-8587326 0.00043 59_[+4]_13 chrII:2748404-2748484 0.00043 6_[+4]_66 chrI:10040186-10040266 0.00046 31_[+4]_41 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAGAGRG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AGAGAGRG width=8 seqs=50 chrV:7216075-7216155 ( 66) AGAGAGAG 1 chrII:8796576-8796656 ( 2) AGAGAGAG 1 chrV:6538454-6538534 ( 47) AGAGAGAG 1 chrIV:8762607-8762687 ( 50) AGAGAGGG 1 chrI:5140362-5140442 ( 22) AGAGAGGG 1 chrV:6030634-6030714 ( 31) AGAGAGGG 1 chrX:2559563-2559643 ( 54) AGAGAGGG 1 chrX:4982256-4982336 ( 25) AGAGAGGG 1 chrX:15386096-15386176 ( 39) AGAGAGGG 1 chrV:14006918-14006998 ( 32) AGAGAGGG 1 chrII:2220021-2220101 ( 1) AGAGAGCG 1 chrI:9516134-9516214 ( 24) AGAGAGCG 1 chrIV:366542-366622 ( 73) TGAGAGAG 1 chrV:3717958-3718038 ( 41) TGAGAGAG 1 chrI:7421429-7421509 ( 41) AGAGAGCG 1 chrIII:11334485-11334565 ( 45) AGAGAGCG 1 chrV:14930256-14930336 ( 44) AGTGAGAG 1 chrIII:8867580-8867660 ( 7) AGAGAGAC 1 chrIV:5598872-5598952 ( 67) AGTGAGAG 1 chrIV:8040774-8040854 ( 62) AGAGAGAC 1 chrIV:7391628-7391708 ( 13) AGAGAGAC 1 chrIV:4034987-4035067 ( 20) AGAGAGAA 1 chrV:15075066-15075146 ( 62) AGAGAGAA 1 chrIV:12651737-12651817 ( 43) AGAGAGAA 1 chrV:9561934-9562014 ( 73) AGAGAGAA 1 chrIII:3619781-3619861 ( 21) AGAGAGAA 1 chrX:16202303-16202383 ( 33) TGAGAGGG 1 chrV:11075780-11075860 ( 31) TGAGAGGG 1 chrI:14939938-14940018 ( 71) TGAGAGCG 1 chrX:5368380-5368460 ( 38) TGAGAGCG 1 chrII:7887477-7887557 ( 71) AGTGAGGG 1 chrIII:7166823-7166903 ( 46) AGTGAGGG 1 chrI:9598349-9598429 ( 24) AGTGAGGG 1 chrI:5057050-5057130 ( 47) TGAGAGAC 1 chrI:4906706-4906786 ( 19) AGAGAGCC 1 chrIII:12472687-12472767 ( 40) TGAGAGAC 1 chrIV:15984349-15984429 ( 40) TGAGAGAC 1 chrV:4860647-4860727 ( 36) TGTGAGAG 1 chrI:1053724-1053804 ( 52) AGAGAGCA 1 chrV:14143760-14143840 ( 22) TGAGAGAA 1 chrX:2807505-2807585 ( 51) AGAGAGCA 1 chrIV:13272617-13272697 ( 35) AGTGAGAC 1 chrII:14036906-14036986 ( 6) TGTGAGGG 1 chrIV:10062900-10062980 ( 23) TGAGAGGA 1 chrX:8806526-8806606 ( 53) TGTGAGCG 1 chrI:5544051-5544131 ( 13) AGGGAGAG 1 chrIV:10344849-10344929 ( 4) AGGGAGAG 1 chrIV:8587246-8587326 ( 60) TGTGAGAC 1 chrII:2748404-2748484 ( 7) AGTGAGCC 1 chrI:10040186-10040266 ( 32) TGTGAGAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAGAGRG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.1187 E= 1.5e-007 143 -1229 -1229 28 -1229 -1229 206 -1229 151 -1229 -258 -13 -1229 -1229 206 -1229 199 -1229 -1229 -1229 -1229 -1229 206 -1229 99 -16 23 -1229 -33 -30 132 -1229 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAGAGRG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 50 E= 1.5e-007 0.680000 0.000000 0.000000 0.320000 0.000000 0.000000 1.000000 0.000000 0.720000 0.000000 0.040000 0.240000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.500000 0.220000 0.280000 0.000000 0.200000 0.200000 0.600000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAGAGRG MEME-4 regular expression -------------------------------------------------------------------------------- [AT]G[AT]GAG[AGC][GAC] -------------------------------------------------------------------------------- Time 17.90 secs. ******************************************************************************** ******************************************************************************** MOTIF GRCGCMGA MEME-5 width = 8 sites = 28 llr = 238 E-value = 3.2e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif GRCGCMGA MEME-5 Description -------------------------------------------------------------------------------- Simplified A :5::15:9 pos.-specific C ::a:75:: probability G a4:a2:a1 matrix T :1:::::: bits 2.1 * ** * 1.9 * ** * 1.6 * ** * 1.4 * ** ** Relative 1.2 * ** ** Entropy 1.0 * ** *** (12.3 bits) 0.8 * ****** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GACGCCGA consensus G A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRCGCMGA MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIII:11336258-11336338 54 1.31e-05 AAAAACCGCC GACGCCGA CAACTTTTGC chrII:5901752-5901832 12 1.31e-05 AAGTCGACGA GACGCCGA GTCTCCCTTA chrV:9964389-9964469 23 3.89e-05 CTGGAGGAGC GGCGCCGA CGACGCTGCC chrII:13016549-13016629 4 3.89e-05 AGA GACGCAGA GACATGTGTC chrIV:5960072-5960152 35 3.89e-05 AAATGAGTTA GGCGCCGA GCCAGGCTCA chrII:3209423-3209503 3 3.89e-05 GA GACGCAGA CACTTTTTTC chrIII:11185676-11185756 52 3.89e-05 TCGGCGCCGC GGCGCCGA GACGACAACA chrII:2748404-2748484 29 3.89e-05 TGAAAAAAGA GACGCAGA CAGCTTGCGG chrV:4860647-4860727 50 3.89e-05 AGAGTGAAGA GACGCAGA CAAGAAAAGA chrI:1807997-1808077 42 3.89e-05 ACGTAGGCTA GACGCAGA GAAACAGGCC chrIII:3619781-3619861 12 3.89e-05 AAAAAATCGG GGCGCCGA TAGAGAGAAC chrX:15342369-15342449 15 3.89e-05 CTGGACAGCG GGCGCCGA GTAGAGCATA chrII:14270586-14270666 9 5.17e-05 AGAAAAGT GGCGCAGA GCTCGGAGAC chrX:8806526-8806606 23 5.17e-05 AGAGAGGGGA GGCGCAGA CAGGAAAATA chrII:2220021-2220101 12 8.96e-05 GAGAGCGAGA GGCGGCGA GAGTAAGTGT chrIII:10153236-10153316 3 8.96e-05 GA GACGGAGA GGACATTTAG chrII:6843922-6844002 25 8.96e-05 AAACGCGCGC GGCGGCGA ACACACTCGG chrI:10097378-10097458 20 8.96e-05 tgaaaataaa gacggaga gatgaaaacg chrX:8163726-8163806 42 1.03e-04 GTTGCTCCGA GTCGCCGA TCGATGTGTT chrIV:11871285-11871365 55 1.03e-04 GTCCGTTGCT GTCGCCGA CGCCGCCGCG chrV:6658899-6658979 2 1.16e-04 A GGCGGAGA CATTGCCATC chrII:759929-760009 68 1.30e-04 aaaagaaaac gtcgcaga aaacg chrIII:764572-764652 48 1.43e-04 CCAGAAAAAC GACGACGA CCGCCCATGA chrII:5276866-5276946 25 1.43e-04 CTCCGCTTCT GACGACGA CGTCGTAGCC chrV:7216075-7216155 7 1.82e-04 CACAGC GACGAAGA AGCCGTAATG chrI:10237401-10237481 11 1.82e-04 CAGTGTGCAC GACGCCGG AAATAAATGG chrIV:15984349-15984429 63 2.20e-04 TAGTGTGAGA GACGCAGG TGGTGGTAAG chrX:11068516-11068596 15 2.20e-04 TAGATCGATA GGCGCCGG TGATGGAAGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRCGCMGA MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:11336258-11336338 1.3e-05 53_[+5]_19 chrII:5901752-5901832 1.3e-05 11_[+5]_61 chrV:9964389-9964469 3.9e-05 22_[+5]_50 chrII:13016549-13016629 3.9e-05 3_[+5]_69 chrIV:5960072-5960152 3.9e-05 34_[+5]_38 chrII:3209423-3209503 3.9e-05 2_[+5]_70 chrIII:11185676-11185756 3.9e-05 51_[+5]_21 chrII:2748404-2748484 3.9e-05 28_[+5]_44 chrV:4860647-4860727 3.9e-05 49_[+5]_23 chrI:1807997-1808077 3.9e-05 41_[+5]_31 chrIII:3619781-3619861 3.9e-05 11_[+5]_61 chrX:15342369-15342449 3.9e-05 14_[+5]_58 chrII:14270586-14270666 5.2e-05 8_[+5]_64 chrX:8806526-8806606 5.2e-05 22_[+5]_50 chrII:2220021-2220101 9e-05 11_[+5]_61 chrIII:10153236-10153316 9e-05 2_[+5]_70 chrII:6843922-6844002 9e-05 24_[+5]_48 chrI:10097378-10097458 9e-05 19_[+5]_53 chrX:8163726-8163806 0.0001 41_[+5]_31 chrIV:11871285-11871365 0.0001 54_[+5]_18 chrV:6658899-6658979 0.00012 1_[+5]_71 chrII:759929-760009 0.00013 67_[+5]_5 chrIII:764572-764652 0.00014 47_[+5]_25 chrII:5276866-5276946 0.00014 24_[+5]_48 chrV:7216075-7216155 0.00018 6_[+5]_66 chrI:10237401-10237481 0.00018 10_[+5]_62 chrIV:15984349-15984429 0.00022 62_[+5]_10 chrX:11068516-11068596 0.00022 14_[+5]_58 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRCGCMGA MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GRCGCMGA width=8 seqs=28 chrIII:11336258-11336338 ( 54) GACGCCGA 1 chrII:5901752-5901832 ( 12) GACGCCGA 1 chrV:9964389-9964469 ( 23) GGCGCCGA 1 chrII:13016549-13016629 ( 4) GACGCAGA 1 chrIV:5960072-5960152 ( 35) GGCGCCGA 1 chrII:3209423-3209503 ( 3) GACGCAGA 1 chrIII:11185676-11185756 ( 52) GGCGCCGA 1 chrII:2748404-2748484 ( 29) GACGCAGA 1 chrV:4860647-4860727 ( 50) GACGCAGA 1 chrI:1807997-1808077 ( 42) GACGCAGA 1 chrIII:3619781-3619861 ( 12) GGCGCCGA 1 chrX:15342369-15342449 ( 15) GGCGCCGA 1 chrII:14270586-14270666 ( 9) GGCGCAGA 1 chrX:8806526-8806606 ( 23) GGCGCAGA 1 chrII:2220021-2220101 ( 12) GGCGGCGA 1 chrIII:10153236-10153316 ( 3) GACGGAGA 1 chrII:6843922-6844002 ( 25) GGCGGCGA 1 chrI:10097378-10097458 ( 20) GACGGAGA 1 chrX:8163726-8163806 ( 42) GTCGCCGA 1 chrIV:11871285-11871365 ( 55) GTCGCCGA 1 chrV:6658899-6658979 ( 2) GGCGGAGA 1 chrII:759929-760009 ( 68) GTCGCAGA 1 chrIII:764572-764652 ( 48) GACGACGA 1 chrII:5276866-5276946 ( 25) GACGACGA 1 chrV:7216075-7216155 ( 7) GACGAAGA 1 chrI:10237401-10237481 ( 11) GACGCCGG 1 chrIV:15984349-15984429 ( 63) GACGCAGG 1 chrX:11068516-11068596 ( 15) GGCGCCGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRCGCMGA MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.95252 E= 3.2e+001 -1145 -1145 206 -1145 99 -1145 71 -129 -1145 202 -1145 -1145 -1145 -1145 206 -1145 -123 154 -42 -1145 88 112 -1145 -1145 -1145 -1145 206 -1145 182 -1145 -116 -1145 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRCGCMGA MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 28 E= 3.2e+001 0.000000 0.000000 1.000000 0.000000 0.500000 0.000000 0.392857 0.107143 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.107143 0.714286 0.178571 0.000000 0.464286 0.535714 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.892857 0.000000 0.107143 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRCGCMGA MEME-5 regular expression -------------------------------------------------------------------------------- G[AG]CGC[CA]GA -------------------------------------------------------------------------------- Time 21.14 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:5586468-5586548 9.76e-03 16_[+4(5.31e-05)]_56 chrX:8952216-8952296 1.20e-01 80 chrX:10656741-10656821 4.90e-01 80 chrIV:5081210-5081290 2.46e-01 30_[+2(9.76e-05)]_42 chrX:9668704-9668784 4.08e-03 2_[+4(2.61e-05)]_70 chrIV:5941446-5941526 1.86e-01 62_[+2(9.76e-05)]_10 chrIII:3984265-3984345 1.19e-02 80 chrV:12819300-12819380 1.02e-01 80 chrIV:12584309-12584389 5.38e-02 80 chrX:15342369-15342449 5.42e-04 14_[+5(3.89e-05)]_45_[+1(1.55e-05)]_\ 5 chrIV:2896128-2896208 8.19e-01 80 chrIV:12583289-12583369 2.91e-01 80 chrV:10020116-10020196 2.13e-02 14_[+3(1.56e-05)]_58 chrIV:5597504-5597584 2.73e-01 80 chrI:13351128-13351208 3.65e-01 80 chrI:9598349-9598429 3.64e-02 80 chrI:9322613-9322693 7.80e-03 56_[+2(2.00e-05)]_16 chrIV:5103501-5103581 2.50e-05 5_[+2(2.00e-05)]_5_[+2(3.88e-05)]_\ 34_[+1(5.90e-05)]_12 chrX:12656807-12656887 3.97e-01 80 chrIV:7390262-7390342 3.07e-01 80 chrIII:11334485-11334565 1.85e-04 31_[+3(1.56e-05)]_5_[+4(5.31e-05)]_\ 28 chrV:8518419-8518499 4.91e-02 49_[+1(3.02e-05)]_23 chrX:13502515-13502595 1.98e-01 80 chrX:2807505-2807585 6.14e-04 67_[+1(4.50e-05)]_5 chrX:16145415-16145495 7.90e-02 80 chrX:8570210-8570290 7.73e-01 80 chrV:7980481-7980561 4.39e-02 80 chrIV:10869086-10869166 2.27e-01 80 chrX:11068516-11068596 7.69e-02 80 chrI:12548144-12548224 3.71e-02 18_[+1(3.02e-05)]_54 chrV:11075780-11075860 6.03e-03 80 chrV:1943632-1943712 3.24e-01 80 chrIII:4562238-4562318 6.83e-01 80 chrII:15190142-15190222 2.40e-01 80 chrV:14006918-14006998 2.67e-05 6_[+1(8.85e-05)]_17_[+4(2.61e-05)]_\ 23_[+2(2.00e-05)]_2_[+2(3.88e-05)] chrIII:3220463-3220543 2.50e-03 34_[+3(1.56e-05)]_38 chrV:10862083-10862163 3.07e-01 80 chrI:10040186-10040266 1.46e-03 69_[+1(1.55e-05)]_3 chrIV:4211043-4211123 9.40e-02 80 chrIV:10819077-10819157 1.78e-02 80 chrIII:3619781-3619861 5.93e-04 11_[+5(3.89e-05)]_1_[+4(9.49e-05)]_\ 10_[+4(9.49e-05)]_34 chrI:1807997-1808077 1.71e-03 14_[+1(8.85e-05)]_19_[+5(3.89e-05)]_\ 31 chrV:6538454-6538534 8.62e-04 46_[+4(1.34e-05)]_16_[+1(3.02e-05)]_\ 2 chrX:5368380-5368460 3.62e-03 80 chrX:59234-59314 7.13e-01 80 chrX:11899226-11899306 1.70e-01 80 chrX:13147267-13147347 1.23e-03 44_[+4(2.61e-05)]_28 chrX:8806526-8806606 4.00e-04 12_[+4(2.61e-05)]_2_[+5(5.17e-05)]_\ 50 chrX:15386096-15386176 3.43e-03 30_[+4(2.61e-05)]_[+4(2.61e-05)]_34 chrIV:14618747-14618827 5.05e-01 80 chrIV:13272617-13272697 1.23e-03 59_[+5(3.89e-05)]_13 chrII:5276866-5276946 1.56e-03 60_[+1(3.02e-05)]_12 chrX:10654678-10654758 9.70e-01 80 chrIII:4922200-4922280 3.23e-01 80 chrIV:5582398-5582478 7.48e-03 25_[+4(1.34e-05)]_47 chrI:6398203-6398283 2.62e-01 80 chrIII:764572-764652 3.36e-02 80 chrV:9978614-9978694 7.49e-03 48_[+1(3.02e-05)]_24 chrI:10097378-10097458 1.22e-02 19_[+5(8.96e-05)]_53 chrII:11621761-11621841 4.27e-02 39_[+1(8.85e-05)]_33 chrX:4982256-4982336 2.46e-02 24_[+4(2.61e-05)]_48 chrII:5901752-5901832 3.30e-05 11_[+5(1.31e-05)]_61 chrIV:5588343-5588423 4.12e-01 80 chrII:12378971-12379051 1.84e-01 80 chrI:12549883-12549963 4.96e-01 80 chrIV:11820095-11820175 3.73e-01 80 chrII:6808669-6808749 3.20e-02 49_[+1(8.85e-05)]_23 chrI:5375401-5375481 2.23e-01 80 chrIII:8988691-8988771 4.20e-02 80 chrV:13757472-13757552 9.90e-01 80 chrI:6611346-6611426 1.31e-03 80 chrV:10722033-10722113 1.17e-03 80 chrI:14939938-14940018 3.37e-02 80 chrX:2559563-2559643 1.31e-02 53_[+4(2.61e-05)]_19 chrIII:1786007-1786087 1.25e-01 8_[+2(2.00e-05)]_64 chrIII:4063923-4064003 4.07e-05 61_[+1(5.90e-05)]_11 chrIII:3855013-3855093 9.07e-01 80 chrIII:4950592-4950672 1.74e-01 1_[+2(3.88e-05)]_71 chrI:1598582-1598662 7.00e-02 80 chrI:2126788-2126868 7.48e-01 80 chrV:4860647-4860727 1.01e-03 49_[+5(3.89e-05)]_23 chrV:6350239-6350319 2.32e-01 80 chrIII:7580723-7580803 1.14e-02 80 chrIV:14260978-14261058 2.32e-02 63_[+1(1.55e-05)]_1_[+1(1.55e-05)] chrIII:7725107-7725187 2.10e-01 80 chrII:4456136-4456216 7.77e-02 52_[+1(8.85e-05)]_20 chrI:2727649-2727729 1.88e-02 49_[+2(2.00e-05)]_23 chrII:2748404-2748484 1.53e-04 28_[+5(3.89e-05)]_44 chrX:5298304-5298384 5.10e-01 80 chrX:14640016-14640096 2.11e-02 39_[+1(8.85e-05)]_33 chrIV:4570693-4570773 2.37e-01 54_[+1(8.85e-05)]_18 chrIV:4720706-4720786 4.23e-01 80 chrIII:11834387-11834467 8.04e-02 80 chrIII:4656550-4656630 2.19e-01 80 chrI:7421429-7421509 3.73e-03 40_[+4(5.31e-05)]_7_[+1(8.85e-05)]_\ 17 chrIV:1549232-1549312 4.87e-01 80 chrIII:12926224-12926304 8.16e-01 80 chrX:4588074-4588154 7.20e-01 80 chrV:9561934-9562014 9.86e-03 13_[+1(8.85e-05)]_15_[+1(8.85e-05)]_\ 28_[+4(9.49e-05)] chrII:7758565-7758645 1.20e-02 80 chrIV:5100269-5100349 1.41e-01 80 chrI:9430714-9430794 1.09e-01 65_[+2(2.00e-05)]_7 chrIV:7391628-7391708 5.50e-02 12_[+4(8.08e-05)]_60 chrII:5948890-5948970 2.28e-02 61_[+3(1.56e-05)]_11 chrX:7284850-7284930 8.92e-02 39_[+2(2.00e-05)]_33 chrIII:9905419-9905499 1.43e-01 17_[+1(8.85e-05)]_1_[+1(8.85e-05)]_\ 12_[+1(8.85e-05)]_26 chrIII:13349182-13349262 7.18e-01 80 chrIV:15984349-15984429 2.13e-02 80 chrX:6745110-6745190 6.21e-01 80 chrIII:11185676-11185756 5.18e-02 51_[+5(3.89e-05)]_21 chrII:3810682-3810762 4.14e-02 80 chrIV:11871285-11871365 7.64e-03 80 chrII:7892033-7892113 4.77e-01 80 chrII:8131543-8131623 9.10e-02 80 chrIII:4335781-4335861 2.06e-02 80 chrIV:12651737-12651817 1.03e-04 43_[+1(5.90e-05)]_3_[+4(1.34e-05)]_\ 18 chrX:4137938-4138018 6.78e-02 80 chrV:15075066-15075146 7.87e-05 6_[+2(3.88e-05)]_39_[+4(8.08e-05)]_\ [+4(9.49e-05)]_1_[+1(8.85e-05)]_2 chrII:10016160-10016240 5.63e-01 80 chrX:16202303-16202383 1.45e-02 80 chrX:7791984-7792064 8.82e-01 80 chrX:4218465-4218545 2.31e-01 80 chrX:4017741-4017821 2.56e-02 80 chrI:10839191-10839271 6.45e-02 69_[+2(2.00e-05)]_3 chrI:4909122-4909202 5.98e-02 33_[+1(8.85e-05)]_39 chrIII:6695350-6695430 1.96e-03 68_[+2(9.76e-05)]_4 chrIV:7663195-7663275 1.44e-02 10_[+1(8.85e-05)]_62 chrIV:4034987-4035067 1.57e-04 20_[+1(5.90e-05)]_8_[+1(8.85e-05)]_\ 36 chrX:15566809-15566889 7.15e-01 80 chrV:14143760-14143840 6.22e-03 22_[+1(5.90e-05)]_39_[+1(1.55e-05)]_\ 3 chrX:10768011-10768091 2.87e-02 80 chrX:6134629-6134709 1.19e-01 80 chrX:8157288-8157368 1.50e-01 80 chrV:20789230-20789310 7.13e-02 5_[+1(8.85e-05)]_67 chrII:3209423-3209503 9.49e-05 2_[+5(3.89e-05)]_3_[+2(9.76e-05)]_\ 15_[+2(9.76e-05)]_1_[+3(1.56e-05)]_27 chrX:5847448-5847528 7.02e-02 9_[+2(3.88e-05)]_63 chrV:3717958-3718038 4.22e-02 40_[+4(5.31e-05)]_32 chrII:1242611-1242691 6.76e-01 80 chrII:6843922-6844002 1.49e-02 24_[+5(8.96e-05)]_48 chrII:5725244-5725324 5.05e-03 80 chrX:1479364-1479444 1.52e-01 72_[+2(9.76e-05)] chrIII:9698849-9698929 1.32e-01 61_[+2(9.76e-05)]_11 chrM:1815-1895 3.15e-01 80 chrIV:17293874-17293954 8.20e-03 51_[+1(5.90e-05)]_21 chrV:4063717-4063797 9.20e-02 80 chrIV:6958828-6958908 1.51e-01 31_[+2(3.88e-05)]_41 chrIII:13348021-13348101 1.08e-01 28_[+2(9.76e-05)]_44 chrIII:7166823-7166903 2.15e-03 13_[+3(1.56e-05)]_59 chrIV:14098944-14099024 8.54e-01 80 chrII:9729910-9729990 3.78e-01 80 chrIV:5588555-5588635 1.99e-01 34_[+2(2.00e-05)]_38 chrV:10904988-10905068 4.20e-02 6_[+1(4.50e-05)]_41_[+1(8.85e-05)]_\ 17 chrI:1053724-1053804 2.22e-02 80 chrI:6438588-6438668 4.62e-01 80 chrX:8089416-8089496 8.22e-01 80 chrII:5334024-5334104 1.03e-01 80 chrX:6740499-6740579 1.48e-01 80 chrIII:10153236-10153316 1.49e-02 2_[+5(8.96e-05)]_70 chrII:14036906-14036986 5.62e-02 80 chrII:11305786-11305866 2.74e-02 43_[+3(1.56e-05)]_29 chrII:6994911-6994991 6.28e-02 57_[+2(2.00e-05)]_15 chrIV:366542-366622 1.07e-04 47_[+4(1.34e-05)]_[+4(9.49e-05)]_9_\ [+4(5.31e-05)] chrV:10677617-10677697 3.54e-01 80 chrV:14368346-14368426 4.24e-02 50_[+3(1.56e-05)]_22 chrIV:5960072-5960152 2.70e-03 34_[+5(3.89e-05)]_38 chrIII:3681602-3681682 1.62e-04 11_[+2(2.00e-05)]_38_[+4(1.34e-05)]_\ 15 chrII:7327127-7327207 6.82e-03 80 chrII:8786025-8786105 2.11e-01 80 chrV:5502645-5502725 4.82e-02 54_[+3(1.56e-05)]_18 chrIV:6806746-6806826 8.28e-02 5_[+2(2.00e-05)]_10_[+2(2.00e-05)]_\ 49 chrI:3334666-3334746 8.23e-01 80 chrIII:7723803-7723883 1.19e-02 19_[+2(3.88e-05)]_53 chrIV:10062900-10062980 1.44e-03 80 chrX:785543-785623 1.55e-01 80 chrI:4805444-4805524 9.58e-01 80 chrI:14570101-14570181 2.87e-01 80 chrIII:5845616-5845696 3.16e-03 45_[+5(8.96e-05)]_10_[+1(5.90e-05)]_\ 9 chrI:8761972-8762052 8.45e-04 63_[+1(1.55e-05)]_9 chrX:6971478-6971558 3.49e-01 80 chrIV:8758755-8758835 1.99e-01 80 chrIV:1842451-1842531 1.68e-02 48_[+3(1.56e-05)]_24 chrII:10302217-10302297 6.26e-01 80 chrIV:16845504-16845584 9.83e-01 80 chrIV:8040774-8040854 4.56e-03 3_[+1(3.02e-05)]_50_[+4(8.08e-05)]_\ 11 chrV:8040585-8040665 1.96e-01 80 chrIII:12472687-12472767 1.60e-03 44_[+5(3.89e-05)]_28 chrIV:5598872-5598952 5.56e-04 41_[+1(1.55e-05)]_17_[+4(8.08e-05)]_\ 6 chrI:316523-316603 5.27e-03 5_[+1(3.02e-05)]_7_[+2(9.76e-05)]_\ 52 chrIII:5757726-5757806 1.49e-01 80 chrIII:4323300-4323380 3.06e-03 62_[+2(2.00e-05)]_10 chrV:6658899-6658979 3.46e-03 59_[+1(5.90e-05)]_13 chrII:14569444-14569524 9.07e-01 80 chrI:3806669-3806749 1.95e-02 29_[+2(3.88e-05)]_43 chrIII:12942481-12942561 2.67e-01 80 chrX:14238444-14238524 2.40e-01 80 chrV:10041600-10041680 9.29e-02 80 chrV:619194-619274 6.18e-04 34_[+3(1.56e-05)]_30_[+2(2.00e-05)] chrIII:2535379-2535459 6.18e-01 80 chrIII:11336258-11336338 7.08e-03 53_[+5(1.31e-05)]_19 chrII:7390467-7390547 2.21e-01 80 chrI:871937-872017 5.76e-01 80 chrX:15376718-15376798 8.60e-02 80 chrV:20879460-20879540 2.39e-02 38_[+3(1.56e-05)]_34 chrII:2976742-2976822 6.25e-01 80 chrIV:13453643-13453723 8.68e-02 23_[+1(4.50e-05)]_49 chrIV:11765609-11765689 2.57e-02 80 chrII:7887477-7887557 3.21e-03 8_[+2(3.88e-05)]_64 chrI:8792463-8792543 4.98e-01 80 chrV:5047386-5047466 3.03e-03 66_[+4(1.34e-05)]_6 chrII:13016549-13016629 2.83e-02 3_[+5(3.89e-05)]_69 chrI:4311740-4311820 3.89e-01 80 chrIII:8867580-8867660 2.15e-04 6_[+4(8.08e-05)]_18_[+1(4.50e-05)]_\ 40 chrII:6993045-6993125 6.10e-02 67_[+3(1.56e-05)]_5 chrX:15983430-15983510 9.91e-01 80 chrI:9516134-9516214 1.04e-02 23_[+4(5.31e-05)]_36_[+1(4.50e-05)]_\ 5 chrII:759929-760009 3.14e-05 16_[+3(1.56e-05)]_22_[+1(1.55e-05)]_\ 26 chrX:16814110-16814190 7.16e-01 80 chrV:810576-810656 1.87e-01 80 chrV:6030634-6030714 1.84e-03 30_[+4(2.61e-05)]_13_[+1(4.50e-05)]_\ 21 chrIV:659787-659867 1.27e-01 3_[+2(2.00e-05)]_69 chrII:2220021-2220101 1.39e-03 [+4(5.31e-05)]_3_[+5(8.96e-05)]_61 chrX:14744625-14744705 5.33e-01 80 chrX:2191993-2192073 5.97e-01 80 chrIV:10344849-10344929 9.75e-03 19_[+1(3.02e-05)]_31_[+1(3.02e-05)]_\ 14 chrI:5544051-5544131 7.17e-03 80 chrI:6435873-6435953 6.35e-02 31_[+2(2.00e-05)]_41 chrI:4906706-4906786 3.06e-03 80 chrI:5057050-5057130 5.81e-03 51_[+5(8.96e-05)]_21 chrIII:3857214-3857294 1.41e-01 59_[+2(2.00e-05)]_13 chrI:13854431-13854511 3.77e-01 80 chrII:14270586-14270666 1.54e-02 8_[+5(5.17e-05)]_64 chrII:1085081-1085161 7.75e-04 70_[+3(1.56e-05)]_2 chrV:14930256-14930336 1.04e-02 43_[+4(8.08e-05)]_29 chrX:8017586-8017666 2.30e-01 80 chrIV:17281732-17281812 6.96e-01 80 chrII:7838773-7838853 4.16e-02 52_[+2(3.88e-05)]_20 chrIV:14272675-14272755 7.20e-04 80 chrIII:5950046-5950126 1.25e-03 80 chrI:5140362-5140442 2.02e-03 21_[+4(2.61e-05)]_[+4(8.08e-05)]_25_\ [+4(1.34e-05)]_10 chrIV:8762607-8762687 5.71e-03 49_[+4(2.61e-05)]_23 chrV:14948783-14948863 7.71e-01 80 chrII:8796576-8796656 8.17e-04 1_[+4(1.34e-05)]_[+4(1.34e-05)]_63 chrI:10237401-10237481 1.88e-03 53_[+4(9.49e-05)]_19 chrV:7216075-7216155 8.75e-05 36_[+1(5.90e-05)]_11_[+4(1.34e-05)]_\ 2_[+4(1.34e-05)]_7 chrX:8163726-8163806 8.71e-02 80 chrV:12026955-12027035 6.34e-01 80 chrV:9964389-9964469 3.02e-04 22_[+5(3.89e-05)]_14_[+1(3.02e-05)]_\ 28 chrIV:8587246-8587326 5.87e-02 2_[+2(9.76e-05)]_70 chrII:8784697-8784777 3.20e-01 80 chrX:13143328-13143408 2.01e-01 80 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n09.farnam.hpc.yale.internal ********************************************************************************