******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/worm/fasta/RankLinear2.0_40/pros-1.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrIII:8058083-8058163 1.0000 80 chrII:9574573-9574653 1.0000 80 chrIII:8085512-8085592 1.0000 80 chrIII:8069412-8069492 1.0000 80 chrX:9102272-9102352 1.0000 80 chrX:11032036-11032116 1.0000 80 chrX:5818395-5818475 1.0000 80 chrV:14177762-14177842 1.0000 80 chrIV:14032834-14032914 1.0000 80 chrX:1005156-1005236 1.0000 80 chrV:6970198-6970278 1.0000 80 chrIII:8663257-8663337 1.0000 80 chrX:15310401-15310481 1.0000 80 chrV:6541917-6541997 1.0000 80 chrI:3759181-3759261 1.0000 80 chrIV:5860895-5860975 1.0000 80 chrIV:14391926-14392006 1.0000 80 chrX:12629410-12629490 1.0000 80 chrI:4320845-4320925 1.0000 80 chrIV:11871340-11871420 1.0000 80 chrI:7217461-7217541 1.0000 80 chrI:10232609-10232689 1.0000 80 chrI:8783831-8783911 1.0000 80 chrV:9692363-9692443 1.0000 80 chrX:2879712-2879792 1.0000 80 chrIV:6646975-6647055 1.0000 80 chrII:12778544-12778624 1.0000 80 chrII:3055701-3055781 1.0000 80 chrIV:10817235-10817315 1.0000 80 chrIV:9910439-9910519 1.0000 80 chrI:6153687-6153767 1.0000 80 chrIV:8066702-8066782 1.0000 80 chrII:6844845-6844925 1.0000 80 chrX:11608183-11608263 1.0000 80 chrII:66508-66588 1.0000 80 chrX:9068212-9068292 1.0000 80 chrIII:13182166-13182246 1.0000 80 chrII:7892056-7892136 1.0000 80 chrX:6252097-6252177 1.0000 80 chrX:12180823-12180903 1.0000 80 chrI:10175378-10175458 1.0000 80 chrIV:13013402-13013482 1.0000 80 chrX:17315038-17315118 1.0000 80 chrX:13155690-13155770 1.0000 80 chrIII:8512471-8512551 1.0000 80 chrIV:6646048-6646128 1.0000 80 chrII:2849468-2849548 1.0000 80 chrI:2831500-2831580 1.0000 80 chrIV:11125379-11125459 1.0000 80 chrIII:11557054-11557134 1.0000 80 chrV:13396521-13396601 1.0000 80 chrV:13704089-13704169 1.0000 80 chrV:12038971-12039051 1.0000 80 chrIII:3820294-3820374 1.0000 80 chrV:12026995-12027075 1.0000 80 chrI:7969029-7969109 1.0000 80 chrIII:4447799-4447879 1.0000 80 chrV:5065230-5065310 1.0000 80 chrX:10372685-10372765 1.0000 80 chrI:3785326-3785406 1.0000 80 chrI:2603778-2603858 1.0000 80 chrX:5275387-5275467 1.0000 80 chrIII:4667049-4667129 1.0000 80 chrIV:14872428-14872508 1.0000 80 chrI:11554630-11554710 1.0000 80 chrI:14070891-14070971 1.0000 80 chrIII:4037443-4037523 1.0000 80 chrI:973165-973245 1.0000 80 chrIV:8183423-8183503 1.0000 80 chrIV:7486347-7486427 1.0000 80 chrIII:2304954-2305034 1.0000 80 chrIV:9196937-9197017 1.0000 80 chrIII:7711103-7711183 1.0000 80 chrIII:8794911-8794991 1.0000 80 chrI:13782066-13782146 1.0000 80 chrV:4810768-4810848 1.0000 80 chrX:9941548-9941628 1.0000 80 chrX:16591671-16591751 1.0000 80 chrX:7475197-7475277 1.0000 80 chrI:4673968-4674048 1.0000 80 chrIII:558999-559079 1.0000 80 chrIII:12369663-12369743 1.0000 80 chrIII:9052687-9052767 1.0000 80 chrI:10478143-10478223 1.0000 80 chrIV:1055959-1056039 1.0000 80 chrV:9856669-9856749 1.0000 80 chrIV:828596-828676 1.0000 80 chrX:993134-993214 1.0000 80 chrI:6154460-6154540 1.0000 80 chrX:1064213-1064293 1.0000 80 chrIII:6137625-6137705 1.0000 80 chrX:871156-871236 1.0000 80 chrII:15263206-15263286 1.0000 80 chrIII:4948806-4948886 1.0000 80 chrIII:13721257-13721337 1.0000 80 chrI:3101923-3102003 1.0000 80 chrX:2552407-2552487 1.0000 80 chrIII:9817287-9817367 1.0000 80 chrII:6868121-6868201 1.0000 80 chrIII:4505875-4505955 1.0000 80 chrI:7861616-7861696 1.0000 80 chrI:6608107-6608187 1.0000 80 chrII:13030964-13031044 1.0000 80 chrX:13675598-13675678 1.0000 80 chrIII:3273234-3273314 1.0000 80 chrIII:8513138-8513218 1.0000 80 chrI:1481673-1481753 1.0000 80 chrX:10435647-10435727 1.0000 80 chrII:8128855-8128935 1.0000 80 chrIII:8070197-8070277 1.0000 80 chrIII:668419-668499 1.0000 80 chrX:877095-877175 1.0000 80 chrV:20424437-20424517 1.0000 80 chrI:4005778-4005858 1.0000 80 chrI:9128825-9128905 1.0000 80 chrX:9113958-9114038 1.0000 80 chrIII:8503453-8503533 1.0000 80 chrX:1319938-1320018 1.0000 80 chrX:9822752-9822832 1.0000 80 chrI:4933010-4933090 1.0000 80 chrX:5729082-5729162 1.0000 80 chrX:14636769-14636849 1.0000 80 chrV:18723773-18723853 1.0000 80 chrX:5336702-5336782 1.0000 80 chrV:8428768-8428848 1.0000 80 chrIII:3789831-3789911 1.0000 80 chrI:10407666-10407746 1.0000 80 chrX:5121927-5122007 1.0000 80 chrX:11467507-11467587 1.0000 80 chrII:10384935-10385015 1.0000 80 chrII:11185166-11185246 1.0000 80 chrI:8307658-8307738 1.0000 80 chrX:11474354-11474434 1.0000 80 chrI:10037819-10037899 1.0000 80 chrIV:8782283-8782363 1.0000 80 chrX:5686251-5686331 1.0000 80 chrIII:4947448-4947528 1.0000 80 chrX:14312578-14312658 1.0000 80 chrIII:7659644-7659724 1.0000 80 chrIV:5754169-5754249 1.0000 80 chrI:9077407-9077487 1.0000 80 chrIV:13980232-13980312 1.0000 80 chrX:13584105-13584185 1.0000 80 chrX:10395932-10396012 1.0000 80 chrX:14961051-14961131 1.0000 80 chrI:6780157-6780237 1.0000 80 chrI:1540561-1540641 1.0000 80 chrX:8163713-8163793 1.0000 80 chrI:10769870-10769950 1.0000 80 chrII:5181625-5181705 1.0000 80 chrX:13584988-13585068 1.0000 80 chrIV:5561320-5561400 1.0000 80 chrII:11567329-11567409 1.0000 80 chrIV:51480-51560 1.0000 80 chrI:4035440-4035520 1.0000 80 chrI:1271141-1271221 1.0000 80 chrX:8201403-8201483 1.0000 80 chrX:10576578-10576658 1.0000 80 chrIII:433124-433204 1.0000 80 chrIV:3636791-3636871 1.0000 80 chrI:14945676-14945756 1.0000 80 chrV:12039991-12040071 1.0000 80 chrII:1246983-1247063 1.0000 80 chrV:20713085-20713165 1.0000 80 chrX:14146897-14146977 1.0000 80 chrIV:7488070-7488150 1.0000 80 chrX:9337923-9338003 1.0000 80 chrIV:10342452-10342532 1.0000 80 chrIII:10634181-10634261 1.0000 80 chrV:15497833-15497913 1.0000 80 chrI:6280484-6280564 1.0000 80 chrIV:8627467-8627547 1.0000 80 chrIII:5715682-5715762 1.0000 80 chrIII:12558232-12558312 1.0000 80 chrII:15256012-15256092 1.0000 80 chrX:16446037-16446117 1.0000 80 chrII:9646256-9646336 1.0000 80 chrIII:888019-888099 1.0000 80 chrX:11057302-11057382 1.0000 80 chrV:13808645-13808725 1.0000 80 chrIII:7116820-7116900 1.0000 80 chrIII:3271928-3272008 1.0000 80 chrX:14504440-14504520 1.0000 80 chrIV:2998663-2998743 1.0000 80 chrII:2220046-2220126 1.0000 80 chrV:6879707-6879787 1.0000 80 chrV:15071439-15071519 1.0000 80 chrIV:6576898-6576978 1.0000 80 chrX:10597753-10597833 1.0000 80 chrX:2432602-2432682 1.0000 80 chrIII:6537291-6537371 1.0000 80 chrV:10273926-10274006 1.0000 80 chrII:7642252-7642332 1.0000 80 chrII:14405296-14405376 1.0000 80 chrI:7711801-7711881 1.0000 80 chrIV:3233592-3233672 1.0000 80 chrI:10035056-10035136 1.0000 80 chrIII:13717679-13717759 1.0000 80 chrI:11095784-11095864 1.0000 80 chrIII:10094752-10094832 1.0000 80 chrIII:9818960-9819040 1.0000 80 chrX:11262469-11262549 1.0000 80 chrI:12065424-12065504 1.0000 80 chrX:4265752-4265832 1.0000 80 chrX:11522286-11522366 1.0000 80 chrI:13373042-13373122 1.0000 80 chrIV:7320112-7320192 1.0000 80 chrII:6858970-6859050 1.0000 80 chrV:9561867-9561947 1.0000 80 chrII:6491964-6492044 1.0000 80 chrX:10637612-10637692 1.0000 80 chrX:13144320-13144400 1.0000 80 chrI:3740530-3740610 1.0000 80 chrI:9869259-9869339 1.0000 80 chrIV:11027738-11027818 1.0000 80 chrI:13951692-13951772 1.0000 80 chrI:6459607-6459687 1.0000 80 chrX:2885487-2885567 1.0000 80 chrIII:9668082-9668162 1.0000 80 chrX:7809704-7809784 1.0000 80 chrII:12222709-12222789 1.0000 80 chrIV:12771583-12771663 1.0000 80 chrIII:8874352-8874432 1.0000 80 chrX:8477639-8477719 1.0000 80 chrII:4506729-4506809 1.0000 80 chrIV:1420283-1420363 1.0000 80 chrI:1069995-1070075 1.0000 80 chrX:8286910-8286990 1.0000 80 chrI:10585373-10585453 1.0000 80 chrI:1273942-1274022 1.0000 80 chrX:16799336-16799416 1.0000 80 chrX:4662639-4662719 1.0000 80 chrIII:1926584-1926664 1.0000 80 chrI:2864107-2864187 1.0000 80 chrII:11293535-11293615 1.0000 80 chrI:6579906-6579986 1.0000 80 chrV:3703991-3704071 1.0000 80 chrV:8130360-8130440 1.0000 80 chrV:18490611-18490691 1.0000 80 chrIV:10346083-10346163 1.0000 80 chrIV:2993589-2993669 1.0000 80 chrIV:1168693-1168773 1.0000 80 chrX:15566798-15566878 1.0000 80 chrV:6246765-6246845 1.0000 80 chrIII:7570453-7570533 1.0000 80 chrV:10715896-10715976 1.0000 80 chrX:11798176-11798256 1.0000 80 chrII:13575680-13575760 1.0000 80 chrI:1062081-1062161 1.0000 80 chrX:5984725-5984805 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/worm/inference_raw/MEME/RankLinear2.0_40_pros-1/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/worm/fasta/RankLinear2.0_40/pros-1.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.233 C 0.263 G 0.264 T 0.24 Background letter frequencies (from file dataset with add-one prior applied): A 0.233 C 0.263 G 0.264 T 0.24 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF AGARAGAG MEME-1 width = 8 sites = 73 llr = 582 E-value = 6.7e-033 ******************************************************************************** -------------------------------------------------------------------------------- Motif AGARAGAG MEME-1 Description -------------------------------------------------------------------------------- Simplified A a2a463a2 pos.-specific C :::::::: probability G :8:637:8 matrix T ::::1::: bits 2.1 * * * 1.9 * * * 1.7 * * * 1.5 * * * Relative 1.3 *** * Entropy 1.1 **** *** (11.5 bits) 0.8 **** *** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AGAGAGAG consensus AGA A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGARAGAG MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIV:10346083-10346163 23 1.43e-05 GGAAAGGAAA AGAGAGAG AAAAACTGCC chrX:7809704-7809784 13 1.43e-05 gttgggtgtA AGAGAGAG GGACATTTTC chrI:3740530-3740610 3 1.43e-05 AG AGAGAGAG AGAGACACGT chrIII:3271928-3272008 33 1.43e-05 agagagagag agagagag agagagagag chrIII:7116820-7116900 50 1.43e-05 AGTTGATGAG AGAGAGAG ACAGACATAG chrX:11057302-11057382 42 1.43e-05 AAAGGTGGGA AGAGAGAG CGCAGAGAAA chrI:10769870-10769950 2 1.43e-05 g agagagag aTGAATGGAT chrI:10037819-10037899 7 1.43e-05 AGAGAA AGAGAGAG CTCCGCCTTT chrV:18723773-18723853 68 1.43e-05 gaggtcagag agagagag agatc chrIII:3273234-3273314 40 1.43e-05 tgacagagag agagagag agagaaaaga chrI:10478143-10478223 18 1.43e-05 AATACAAGAG AGAGAGAG AAAATAAGAG chrI:973165-973245 34 1.43e-05 GCGGAGTGGG AGAGAGAG CGCGCGAGAC chrIII:11557054-11557134 65 1.43e-05 GGGTTgaaag agagagag agagtggg chrV:9692363-9692443 73 1.43e-05 AGAAAGGGAA AGAGAGAG chrIII:8663257-8663337 15 1.43e-05 TCCAGTTTTG AGAGAGAG Gtctctctct chrX:2885487-2885567 73 2.70e-05 CAGTGGAAGG AGAAAGAG chrIV:7320112-7320192 28 2.70e-05 ACCGACGGAG AGAAAGAG GCGCGCGCGC chrI:7711801-7711881 44 2.70e-05 AGTAAGCGag agaaagag gcacagaatg chrV:20424437-20424517 17 2.70e-05 ACACTCATTG AGAAAGAG AAGAAACAAA chrV:12026995-12027075 70 2.70e-05 TCGAGATGAG AGAAAGAG ATG chrV:18490611-18490691 63 3.96e-05 AGGGGGAGCC AGAGAAAG GTTGAGGAGG chrV:15071439-15071519 29 3.96e-05 AGAGTCGGTC AGAGAAAG ACAACCGGAG chrII:9646256-9646336 22 3.96e-05 GACGTGCCGA AGAGAAAG GATTCGCGAA chrIII:7711103-7711183 20 3.96e-05 TGCAGGGAAG AGAGAAAG TGGGCGGCGG chrI:14070891-14070971 62 3.96e-05 ACGGACGAAT AGAGAAAG AAAAGGCGCA chrII:11293535-11293615 53 5.07e-05 AGAGATTTAG AGAAAAAG AGGAGTGCGG chrII:4506729-4506809 11 5.07e-05 agcaagacgg agaaaaag aGCCCGTGCC chrX:10597753-10597833 20 5.07e-05 TCGGGGAGGG AGAAAAAG GTTACCGCAA chrIV:828596-828676 18 5.07e-05 AGAGATTTAG AGAAAAAG AGGACGAAGA chrI:1062081-1062161 25 6.70e-05 CCGCTGCTGG AGAGGGAG CCACCACCAA chrX:8286910-8286990 44 6.70e-05 GACCAAAGTG AGAGGGAG GTCTCCACTC chrII:11185166-11185246 57 6.70e-05 GGAAGGAAAG AGAGGGAG AGGCTGCGGA chrV:10715896-10715976 6 8.13e-05 tgaag agaaggag gcggtgaaga chrIII:7570453-7570533 71 8.13e-05 GCGGGTGACA AGAAGGAG AG chrX:11467507-11467587 23 8.13e-05 CCGCAACAAC AGAAGGAG GGCAAAAGCA chrX:10435647-10435727 33 8.13e-05 CGTCAGGAGA AGAAGGAG GACGAGAAGA chrI:6608107-6608187 35 8.13e-05 aacgacaacg agaaggag ttgaagtaga chrX:993134-993214 34 8.13e-05 TGGGGAGTGG AGAAGGAG GCGAAGCTAA chrIV:8066702-8066782 17 8.13e-05 AGATGGTGGT AGAAGGAG GCGTTACCCA chrX:16799336-16799416 17 9.39e-05 aggaagatcg agagagaa gagtgtgcgt chrI:7969029-7969109 56 9.39e-05 AAGAAAAAAA AGAGAGAA CACAAGACAC chrV:9856669-9856749 70 1.05e-04 GGGAAATGGA AGAAAGAA AGA chrIII:2304954-2305034 17 1.05e-04 AGACGTCTGC AGAAAGAA CGAGAGACTG chrI:10232609-10232689 73 1.19e-04 TAAGGATTGA AGAGGAAG chrV:13808645-13808725 18 1.59e-04 agtgagtgag agagtgag tgagcgaAGC chrI:10407666-10407746 17 1.59e-04 TCTTCGGAAG AGAAGAAG ACCACCGTCG chrX:5729082-5729162 58 1.59e-04 gagcaggaga agaagaag aagtagcaag chrX:871156-871236 55 1.59e-04 TTGAGAGGGA AAAGAGAG GTGGGGGTGA chrX:1064213-1064293 65 1.59e-04 cagcagcaga agaagaag ctgcGAGG chrI:4673968-4674048 70 1.59e-04 GGTGTTgaag agaagaag acg chrV:14177762-14177842 26 1.59e-04 tTTGGTTGTC AGAGTGAG GTGAGGAGGA chrX:10372685-10372765 26 1.84e-04 AGATCGTAGG AAAAAGAG AAATAATATA chrV:12038971-12039051 45 1.84e-04 ggagcgacga agaatgag cggggcaaga chrI:1273942-1274022 3 1.95e-04 GC AGAGAAAA GTGAAAGTTT chrIII:7659644-7659724 32 2.19e-04 CCAGACGTTA AGAGGGAA AAGGCTGCTG chrX:9941548-9941628 10 2.32e-04 ATTTGTGAT AGAAGGAA TACGGTCCTA chrIV:2998663-2998743 5 2.56e-04 GTGG AAAGAAAG GCAGTGAAAA chrX:8201403-8201483 15 2.56e-04 AGGAGAGTAA AGAGTAAG ACAGTCGGAC chrV:9561867-9561947 64 2.77e-04 GGGAACTGAa aaaaaaag aagaggatg chrII:7892056-7892136 60 2.77e-04 TCTCAGTCGG AAAAAAAG GAGGGAAAAA chrIV:5860895-5860975 65 2.77e-04 GGAAACTGAG AGAATAAG CAGGCAGA chrIV:10342452-10342532 66 3.17e-04 CGGCAGAGAT AGAGGAAA GTGATAA chrIII:4505875-4505955 73 3.17e-04 TAGAAAATGG AGAGGAAA chrIV:9196937-9197017 70 3.52e-04 ATAAGCAACG AGAGTGAA GAG chrIII:4667049-4667129 25 3.52e-04 GAGGACGAGA AAAGAGAA GTGGTGTGTG chrX:5275387-5275467 27 3.52e-04 ACCCCCGGCG AGAGTGAA TGGCGGCGAG chrIII:3820294-3820374 29 3.52e-04 GCAGACGACG AAAGAGAA CGAAGGTGAA chrV:5065230-5065310 44 4.22e-04 GAATTGGTGA AAAATGAG ACGGAGAGTT chrV:13704089-13704169 73 4.22e-04 GGTGGAAGGA AAAATGAG chrII:12222709-12222789 17 4.57e-04 GAACGCGAGT AGAGAGAC TGAGGGAAAA chrV:6970198-6970278 59 4.57e-04 GATGACACCC AGAGAGAC TGAGACAGTC chrI:6459607-6459687 73 5.12e-04 agacaacgag aaaaggaa chrX:11262469-11262549 62 5.85e-04 AAGACAGCTG AAAGGAAA GGGGAATGCC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGARAGAG MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:10346083-10346163 1.4e-05 22_[+1]_50 chrX:7809704-7809784 1.4e-05 12_[+1]_60 chrI:3740530-3740610 1.4e-05 2_[+1]_70 chrIII:3271928-3272008 1.4e-05 32_[+1]_40 chrIII:7116820-7116900 1.4e-05 49_[+1]_23 chrX:11057302-11057382 1.4e-05 41_[+1]_31 chrI:10769870-10769950 1.4e-05 1_[+1]_71 chrI:10037819-10037899 1.4e-05 6_[+1]_66 chrV:18723773-18723853 1.4e-05 67_[+1]_5 chrIII:3273234-3273314 1.4e-05 39_[+1]_33 chrI:10478143-10478223 1.4e-05 17_[+1]_55 chrI:973165-973245 1.4e-05 33_[+1]_39 chrIII:11557054-11557134 1.4e-05 64_[+1]_8 chrV:9692363-9692443 1.4e-05 72_[+1] chrIII:8663257-8663337 1.4e-05 14_[+1]_58 chrX:2885487-2885567 2.7e-05 72_[+1] chrIV:7320112-7320192 2.7e-05 27_[+1]_45 chrI:7711801-7711881 2.7e-05 43_[+1]_29 chrV:20424437-20424517 2.7e-05 16_[+1]_56 chrV:12026995-12027075 2.7e-05 69_[+1]_3 chrV:18490611-18490691 4e-05 62_[+1]_10 chrV:15071439-15071519 4e-05 28_[+1]_44 chrII:9646256-9646336 4e-05 21_[+1]_51 chrIII:7711103-7711183 4e-05 19_[+1]_53 chrI:14070891-14070971 4e-05 61_[+1]_11 chrII:11293535-11293615 5.1e-05 52_[+1]_20 chrII:4506729-4506809 5.1e-05 10_[+1]_62 chrX:10597753-10597833 5.1e-05 19_[+1]_53 chrIV:828596-828676 5.1e-05 17_[+1]_55 chrI:1062081-1062161 6.7e-05 24_[+1]_48 chrX:8286910-8286990 6.7e-05 43_[+1]_29 chrII:11185166-11185246 6.7e-05 56_[+1]_16 chrV:10715896-10715976 8.1e-05 5_[+1]_67 chrIII:7570453-7570533 8.1e-05 70_[+1]_2 chrX:11467507-11467587 8.1e-05 22_[+1]_50 chrX:10435647-10435727 8.1e-05 32_[+1]_40 chrI:6608107-6608187 8.1e-05 34_[+1]_38 chrX:993134-993214 8.1e-05 33_[+1]_39 chrIV:8066702-8066782 8.1e-05 16_[+1]_56 chrX:16799336-16799416 9.4e-05 16_[+1]_56 chrI:7969029-7969109 9.4e-05 55_[+1]_17 chrV:9856669-9856749 0.00011 69_[+1]_3 chrIII:2304954-2305034 0.00011 16_[+1]_56 chrI:10232609-10232689 0.00012 72_[+1] chrV:13808645-13808725 0.00016 17_[+1]_55 chrI:10407666-10407746 0.00016 16_[+1]_56 chrX:5729082-5729162 0.00016 57_[+1]_15 chrX:871156-871236 0.00016 54_[+1]_18 chrX:1064213-1064293 0.00016 64_[+1]_8 chrI:4673968-4674048 0.00016 69_[+1]_3 chrV:14177762-14177842 0.00016 25_[+1]_47 chrX:10372685-10372765 0.00018 25_[+1]_47 chrV:12038971-12039051 0.00018 44_[+1]_28 chrI:1273942-1274022 0.00019 2_[+1]_70 chrIII:7659644-7659724 0.00022 31_[+1]_41 chrX:9941548-9941628 0.00023 9_[+1]_63 chrIV:2998663-2998743 0.00026 4_[+1]_68 chrX:8201403-8201483 0.00026 14_[+1]_58 chrV:9561867-9561947 0.00028 63_[+1]_9 chrII:7892056-7892136 0.00028 59_[+1]_13 chrIV:5860895-5860975 0.00028 64_[+1]_8 chrIV:10342452-10342532 0.00032 65_[+1]_7 chrIII:4505875-4505955 0.00032 72_[+1] chrIV:9196937-9197017 0.00035 69_[+1]_3 chrIII:4667049-4667129 0.00035 24_[+1]_48 chrX:5275387-5275467 0.00035 26_[+1]_46 chrIII:3820294-3820374 0.00035 28_[+1]_44 chrV:5065230-5065310 0.00042 43_[+1]_29 chrV:13704089-13704169 0.00042 72_[+1] chrII:12222709-12222789 0.00046 16_[+1]_56 chrV:6970198-6970278 0.00046 58_[+1]_14 chrI:6459607-6459687 0.00051 72_[+1] chrX:11262469-11262549 0.00058 61_[+1]_11 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGARAGAG MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AGARAGAG width=8 seqs=73 chrIV:10346083-10346163 ( 23) AGAGAGAG 1 chrX:7809704-7809784 ( 13) AGAGAGAG 1 chrI:3740530-3740610 ( 3) AGAGAGAG 1 chrIII:3271928-3272008 ( 33) AGAGAGAG 1 chrIII:7116820-7116900 ( 50) AGAGAGAG 1 chrX:11057302-11057382 ( 42) AGAGAGAG 1 chrI:10769870-10769950 ( 2) AGAGAGAG 1 chrI:10037819-10037899 ( 7) AGAGAGAG 1 chrV:18723773-18723853 ( 68) AGAGAGAG 1 chrIII:3273234-3273314 ( 40) AGAGAGAG 1 chrI:10478143-10478223 ( 18) AGAGAGAG 1 chrI:973165-973245 ( 34) AGAGAGAG 1 chrIII:11557054-11557134 ( 65) AGAGAGAG 1 chrV:9692363-9692443 ( 73) AGAGAGAG 1 chrIII:8663257-8663337 ( 15) AGAGAGAG 1 chrX:2885487-2885567 ( 73) AGAAAGAG 1 chrIV:7320112-7320192 ( 28) AGAAAGAG 1 chrI:7711801-7711881 ( 44) AGAAAGAG 1 chrV:20424437-20424517 ( 17) AGAAAGAG 1 chrV:12026995-12027075 ( 70) AGAAAGAG 1 chrV:18490611-18490691 ( 63) AGAGAAAG 1 chrV:15071439-15071519 ( 29) AGAGAAAG 1 chrII:9646256-9646336 ( 22) AGAGAAAG 1 chrIII:7711103-7711183 ( 20) AGAGAAAG 1 chrI:14070891-14070971 ( 62) AGAGAAAG 1 chrII:11293535-11293615 ( 53) AGAAAAAG 1 chrII:4506729-4506809 ( 11) AGAAAAAG 1 chrX:10597753-10597833 ( 20) AGAAAAAG 1 chrIV:828596-828676 ( 18) AGAAAAAG 1 chrI:1062081-1062161 ( 25) AGAGGGAG 1 chrX:8286910-8286990 ( 44) AGAGGGAG 1 chrII:11185166-11185246 ( 57) AGAGGGAG 1 chrV:10715896-10715976 ( 6) AGAAGGAG 1 chrIII:7570453-7570533 ( 71) AGAAGGAG 1 chrX:11467507-11467587 ( 23) AGAAGGAG 1 chrX:10435647-10435727 ( 33) AGAAGGAG 1 chrI:6608107-6608187 ( 35) AGAAGGAG 1 chrX:993134-993214 ( 34) AGAAGGAG 1 chrIV:8066702-8066782 ( 17) AGAAGGAG 1 chrX:16799336-16799416 ( 17) AGAGAGAA 1 chrI:7969029-7969109 ( 56) AGAGAGAA 1 chrV:9856669-9856749 ( 70) AGAAAGAA 1 chrIII:2304954-2305034 ( 17) AGAAAGAA 1 chrI:10232609-10232689 ( 73) AGAGGAAG 1 chrV:13808645-13808725 ( 18) AGAGTGAG 1 chrI:10407666-10407746 ( 17) AGAAGAAG 1 chrX:5729082-5729162 ( 58) AGAAGAAG 1 chrX:871156-871236 ( 55) AAAGAGAG 1 chrX:1064213-1064293 ( 65) AGAAGAAG 1 chrI:4673968-4674048 ( 70) AGAAGAAG 1 chrV:14177762-14177842 ( 26) AGAGTGAG 1 chrX:10372685-10372765 ( 26) AAAAAGAG 1 chrV:12038971-12039051 ( 45) AGAATGAG 1 chrI:1273942-1274022 ( 3) AGAGAAAA 1 chrIII:7659644-7659724 ( 32) AGAGGGAA 1 chrX:9941548-9941628 ( 10) AGAAGGAA 1 chrIV:2998663-2998743 ( 5) AAAGAAAG 1 chrX:8201403-8201483 ( 15) AGAGTAAG 1 chrV:9561867-9561947 ( 64) AAAAAAAG 1 chrII:7892056-7892136 ( 60) AAAAAAAG 1 chrIV:5860895-5860975 ( 65) AGAATAAG 1 chrIV:10342452-10342532 ( 66) AGAGGAAA 1 chrIII:4505875-4505955 ( 73) AGAGGAAA 1 chrIV:9196937-9197017 ( 70) AGAGTGAA 1 chrIII:4667049-4667129 ( 25) AAAGAGAA 1 chrX:5275387-5275467 ( 27) AGAGTGAA 1 chrIII:3820294-3820374 ( 29) AAAGAGAA 1 chrV:5065230-5065310 ( 44) AAAATGAG 1 chrV:13704089-13704169 ( 73) AAAATGAG 1 chrII:12222709-12222789 ( 17) AGAGAGAC 1 chrV:6970198-6970278 ( 59) AGAGAGAC 1 chrI:6459607-6459687 ( 73) AAAAGGAA 1 chrX:11262469-11262549 ( 62) AAAGGAAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGARAGAG MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.1364 E= 6.7e-033 210 -1283 -1283 -1283 -63 -1283 168 -1283 210 -1283 -1283 -1283 87 -1283 112 -1283 134 -1283 12 -96 44 -1283 137 -1283 210 -1283 -1283 -1283 -18 -326 154 -1283 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGARAGAG MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 73 E= 6.7e-033 1.000000 0.000000 0.000000 0.000000 0.150685 0.000000 0.849315 0.000000 1.000000 0.000000 0.000000 0.000000 0.424658 0.000000 0.575342 0.000000 0.589041 0.000000 0.287671 0.123288 0.315068 0.000000 0.684932 0.000000 1.000000 0.000000 0.000000 0.000000 0.205479 0.027397 0.767123 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGARAGAG MEME-1 regular expression -------------------------------------------------------------------------------- AGA[GA][AG][GA]A[GA] -------------------------------------------------------------------------------- Time 10.04 secs. ******************************************************************************** ******************************************************************************** MOTIF TYTCTCTS MEME-2 width = 8 sites = 93 llr = 693 E-value = 5.5e-037 ******************************************************************************** -------------------------------------------------------------------------------- Motif TYTCTCTS MEME-2 Description -------------------------------------------------------------------------------- Simplified A ::::2::: pos.-specific C :6:92815 probability G :::1:::4 matrix T a3a:6291 bits 2.1 * 1.9 * * 1.7 * ** 1.5 * ** * Relative 1.3 * ** ** Entropy 1.1 **** ** (10.8 bits) 0.8 ******* 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TCTCTCTC consensus T A G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TYTCTCTS MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrV:8130360-8130440 25 1.59e-05 CCGTGTCTTT TCTCTCTC CCTCTTCAGT chrI:1273942-1274022 52 1.59e-05 tctctctctc tctctctc tTCTGAATGA chrII:15256012-15256092 24 1.59e-05 tgtctctctc tctctctc tgcttctcac chrX:14146897-14146977 66 1.59e-05 tatctctatt tctctctc atctctc chrI:14945676-14945756 4 1.59e-05 ctc tctctctc tTTCTATTCC chrIII:433124-433204 9 1.59e-05 tctctctc tctctctc tctctcGACC chrIII:8503453-8503533 28 1.59e-05 ACTAGTTCAc tctctctc tctgcttctc chrI:9128825-9128905 45 1.59e-05 CTAATTCTCT TCTCTCTC CTACCTATTT chrI:4005778-4005858 8 1.59e-05 gtctctc tctctctc tccctctTTT chrIII:668419-668499 47 1.59e-05 CAtctctcca tctctctc tctctccctc chrI:3785326-3785406 10 1.59e-05 CATTTCGTC TCTCTCTC CAGTCAGTAA chrIII:11557054-11557134 46 1.59e-05 CATCTCTGAC TCTCTCTC TGGGTTgaaa chrX:2879712-2879792 53 1.59e-05 TTGCCCCCTC TCTCTCTC TCTTCTGCAT chrV:6541917-6541997 59 1.59e-05 GAGAATCCTC TCTCTCTC CCGCGCTCTC chrIII:8663257-8663337 26 1.59e-05 GAGAGAGGtc tctctctc tgtccctctc chrV:18490611-18490691 34 3.18e-05 TATTGATCCA TCTCTCTG TGCAGGGAGG chrV:6879707-6879787 46 3.18e-05 TCTCTGCCGC TCTCTCTG ACTCTCCGAC chrI:6780157-6780237 57 3.18e-05 CACCCTCTCA TCTCTCTG GAGACGGCAG chrIV:1055959-1056039 46 3.18e-05 TTTGAGCAGA TCTCTCTG CTTTTCCAGC chrIV:14872428-14872508 57 3.18e-05 GGATCACTGC TCTCTCTG TCAGTGATCC chrI:2603778-2603858 1 3.18e-05 . TCTCTCTG CGTCTCCTCA chrIII:8512471-8512551 32 3.18e-05 GGTAACATAC TCTCTCTG CCCCTCCGTT chrX:6252097-6252177 12 3.18e-05 ACTGTCTTTA TCTCTCTG TCCTATACAG chrIV:10346083-10346163 73 4.63e-05 CCTGAGCGTC TTTCTCTC chrV:10273926-10274006 17 4.63e-05 AGAGACTCTC TTTCTCTC TATGAGAGCC chrIV:6646048-6646128 39 4.63e-05 TCTCGCATAA TTTCTCTC GCAGTCAGTC chrX:9068212-9068292 73 4.63e-05 TTCTATTCCC TTTCTCTC chrV:14177762-14177842 2 4.63e-05 c tttctctc catctctTTG chrIII:8058083-8058163 21 4.63e-05 GATTACACCT TTTCTCTC AATTAACAAT chrII:13575680-13575760 69 6.08e-05 CCGAGTTGTG TTTCTCTG CGCT chrII:1246983-1247063 57 6.08e-05 TTGTCCTCGC TTTCTCTG GTCAGCTCTC chrIV:51480-51560 25 6.08e-05 GACACACCGA TTTCTCTG ACTTTTTCTT chrIV:8782283-8782363 14 6.08e-05 AGTAGCGTCT TTTCTCTG ACCTCCATTT chrV:18723773-18723853 1 6.08e-05 . TTTCTCTG CCACTCTCTC chrIII:558999-559079 67 6.08e-05 CTTTCCTCGT TTTCTCTG CCGTCT chrI:2831500-2831580 63 6.08e-05 GCTACACCAA TTTCTCTG CGTCTCTCGC chrIV:1168693-1168773 3 7.62e-05 tc tctcactc ttacacactc chrV:3703991-3704071 17 7.62e-05 tctctcgctc tctcactc gtctcCATTC chrII:7892056-7892136 9 7.62e-05 CTACCTCT TCTCACTC TATTCTATTC chrIII:7570453-7570533 12 1.24e-04 GTCTTCTAAG TCTCACTG TCTCTTGCAC chrI:10035056-10035136 51 1.24e-04 CTCACTGCCG TCTCACTG TCGTCTGTCT chrIV:6576898-6576978 35 1.24e-04 TATATCTCTT TCTCCCTC TCTTGCGTTT chrIV:3636791-3636871 39 1.24e-04 ACTCGTCTCG TCTCCCTC GCACGCGCGC chrI:9077407-9077487 18 1.24e-04 CGACGCGTAG TCTCTTTC GCACGCAACT chrX:13155690-13155770 16 1.24e-04 CGAATACGGA TCTCACTG ATCTGTCAGT chrX:12629410-12629490 19 1.24e-04 CAAATTTTGC TCTCACTG TGTGTGTGGC chrX:9102272-9102352 7 1.24e-04 CACTTC TCTCCCTC TCGTACTCTT chrII:11293535-11293615 22 1.52e-04 CCTTCGAACT TTTCACTC CGGGAGGAGA chrX:4662639-4662719 2 1.52e-04 a tttcactC CAAAATGTCT chrIII:888019-888099 8 1.52e-04 TTTTTCT TCTCTCTT TTCATCCCTT chrIII:4948806-4948886 5 1.52e-04 GTCA TCTCTCTT TTCTAAACAC chrX:993134-993214 58 1.84e-04 CTAACTGAAA TCTCCCTG AATGACATGC chrI:11554630-11554710 30 1.84e-04 GATATATGGT TCTCCCTG ATCGGGCGGT chrX:7809704-7809784 36 2.45e-04 TTTTCACCCT TTTCCCTC GTGTTTACTA chrX:11262469-11262549 3 2.45e-04 AA TTTCTTTC CAACTGAATG chrI:1271141-1271221 67 2.45e-04 GAGGATCCGC TTTCCCTC TTCTCC chrII:11567329-11567409 57 2.45e-04 TCTCGCGCGC TCTCTCCC TAGCCCCCTT chrIII:4037443-4037523 14 2.45e-04 TCCCCAGGCT TTTCCCTC CGTCCCGGGG chrI:4320845-4320925 29 2.45e-04 CACATAGTAC TCTCTCCC CTTCTTATTC chrX:5984725-5984805 3 2.58e-04 TT TTTCTCTT CTCTTCACCA chrX:11522286-11522366 16 3.05e-04 CTATCTATCG TTTCTTTG CGCTCTCCAC chrX:11474354-11474434 30 3.05e-04 TTCATCTGCG TTTCTTTG CGAGATTGGC chrII:8128855-8128935 8 3.05e-04 CGTTCTA TCTCTCCG TCTCCACTAC chrII:66508-66588 48 3.05e-04 GGGTCACCCT TTTCTTTG CCTATATTAG chrIV:14391926-14392006 23 3.05e-04 AATGGCCGAC TTTCCCTG TTTTGGGTGG chrX:5121927-5122007 71 3.20e-04 CATTTATTGA TTTCTCCC CC chrIII:3789831-3789911 24 3.20e-04 CATCCCTCAT TTTCTCCC TTTCCCGCAT chrX:13584988-13585068 13 3.35e-04 TCCCCCTTTT TCTCATTC AAATTTCGCG chrII:4506729-4506809 67 3.65e-04 AACCTCTGCG TCTCACTT GGTAAG chrIII:13717679-13717759 32 3.65e-04 TGTGTCTGCG TCTCACTT CTTCATCGGT chrX:9113958-9114038 22 3.65e-04 CCATTTCCTC TCTCACTT TACCCTCTCT chrI:10585373-10585453 41 4.10e-04 ACACTTTGTC TCTGTCTC TCGAGGTCAC chrV:15071439-15071519 9 4.10e-04 tcattcac tctcATTG AGAGAGTCGG chrII:2220046-2220126 13 4.10e-04 GTGCAGGGTG TCTCATTG TCCGGGCCCC chrI:1540561-1540641 11 4.10e-04 TTACGTCATC TCTCCTTC TTCCCCCATC chrIII:4505875-4505955 3 4.10e-04 CT TCTGTCTC TTACGACTCA chrIV:8183423-8183503 31 4.69e-04 TCTCTGCTCT TCTCACCC CTGGCTTACA chrII:6844845-6844925 25 4.69e-04 TGTTTCATTT TTTCATTC TCGCCGAAAC chrIII:9668082-9668162 43 5.01e-04 CCGTCTAGAC TCTGTCTG CGTCTCAATG chrX:13144320-13144400 5 5.01e-04 TTCC TCTCCTTG GTTTTTCTAC chrX:13584105-13584185 22 6.08e-04 CCTCACCCCC TCTCCCCC TATCTGCTGT chrX:14312578-14312658 62 6.08e-04 GCTGTCTCCG TCTCTTCC TCGTCCTCAT chrI:1481673-1481753 37 6.08e-04 AGCCAATACG TCTCCCCC CCCCCCCTCC chrI:10175378-10175458 11 6.08e-04 GAGCCTCTTC TTTCCTTC CTTCCTTTCC chrX:5818395-5818475 6 6.08e-04 TTCAC TCTCACCG CACTGCGAAC chrIV:5561320-5561400 59 6.66e-04 TAATAAGTAT TTTCCCTT TTGAGGCCTT chrI:6608107-6608187 7 6.66e-04 TCCCTC TTTCTTTT CCTGCGCgga chrV:8428768-8428848 2 7.30e-04 G TCTCTTCG TTTGCTATAC chrIV:7486347-7486427 22 7.30e-04 AGCCTCATTG TTTGTCTG CGACACAGAG chrI:10769870-10769950 37 7.77e-04 CCCTTCTTCT TTTCTTCC ACTGGCATTT chrX:10597753-10597833 69 8.09e-04 CTGCCTCCAA TCTGACTC CGTT chrX:877095-877175 6 8.09e-04 ATCTG TGTCTCTC GTTGTTTGTT chrIV:11125379-11125459 46 1.18e-03 CCTCACTTTG CCTCTCTG GCCAATCGAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TYTCTCTS MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:8130360-8130440 1.6e-05 24_[+2]_48 chrI:1273942-1274022 1.6e-05 51_[+2]_21 chrII:15256012-15256092 1.6e-05 23_[+2]_49 chrX:14146897-14146977 1.6e-05 65_[+2]_7 chrI:14945676-14945756 1.6e-05 3_[+2]_69 chrIII:433124-433204 1.6e-05 8_[+2]_64 chrIII:8503453-8503533 1.6e-05 27_[+2]_45 chrI:9128825-9128905 1.6e-05 44_[+2]_28 chrI:4005778-4005858 1.6e-05 7_[+2]_65 chrIII:668419-668499 1.6e-05 46_[+2]_26 chrI:3785326-3785406 1.6e-05 9_[+2]_63 chrIII:11557054-11557134 1.6e-05 45_[+2]_27 chrX:2879712-2879792 1.6e-05 52_[+2]_20 chrV:6541917-6541997 1.6e-05 58_[+2]_14 chrIII:8663257-8663337 1.6e-05 25_[+2]_47 chrV:18490611-18490691 3.2e-05 33_[+2]_39 chrV:6879707-6879787 3.2e-05 45_[+2]_27 chrI:6780157-6780237 3.2e-05 56_[+2]_16 chrIV:1055959-1056039 3.2e-05 45_[+2]_27 chrIV:14872428-14872508 3.2e-05 56_[+2]_16 chrI:2603778-2603858 3.2e-05 [+2]_72 chrIII:8512471-8512551 3.2e-05 31_[+2]_41 chrX:6252097-6252177 3.2e-05 11_[+2]_61 chrIV:10346083-10346163 4.6e-05 72_[+2] chrV:10273926-10274006 4.6e-05 16_[+2]_56 chrIV:6646048-6646128 4.6e-05 38_[+2]_34 chrX:9068212-9068292 4.6e-05 72_[+2] chrV:14177762-14177842 4.6e-05 1_[+2]_71 chrIII:8058083-8058163 4.6e-05 20_[+2]_52 chrII:13575680-13575760 6.1e-05 68_[+2]_4 chrII:1246983-1247063 6.1e-05 56_[+2]_16 chrIV:51480-51560 6.1e-05 24_[+2]_48 chrIV:8782283-8782363 6.1e-05 13_[+2]_59 chrV:18723773-18723853 6.1e-05 [+2]_72 chrIII:558999-559079 6.1e-05 66_[+2]_6 chrI:2831500-2831580 6.1e-05 62_[+2]_10 chrIV:1168693-1168773 7.6e-05 2_[+2]_70 chrV:3703991-3704071 7.6e-05 16_[+2]_56 chrII:7892056-7892136 7.6e-05 8_[+2]_64 chrIII:7570453-7570533 0.00012 11_[+2]_61 chrI:10035056-10035136 0.00012 50_[+2]_22 chrIV:6576898-6576978 0.00012 34_[+2]_38 chrIV:3636791-3636871 0.00012 38_[+2]_34 chrI:9077407-9077487 0.00012 17_[+2]_55 chrX:13155690-13155770 0.00012 15_[+2]_57 chrX:12629410-12629490 0.00012 18_[+2]_54 chrX:9102272-9102352 0.00012 6_[+2]_66 chrII:11293535-11293615 0.00015 21_[+2]_51 chrX:4662639-4662719 0.00015 1_[+2]_71 chrIII:888019-888099 0.00015 7_[+2]_65 chrIII:4948806-4948886 0.00015 4_[+2]_68 chrX:993134-993214 0.00018 57_[+2]_15 chrI:11554630-11554710 0.00018 29_[+2]_43 chrX:7809704-7809784 0.00024 35_[+2]_37 chrX:11262469-11262549 0.00024 2_[+2]_70 chrI:1271141-1271221 0.00024 66_[+2]_6 chrII:11567329-11567409 0.00024 56_[+2]_16 chrIII:4037443-4037523 0.00024 13_[+2]_59 chrI:4320845-4320925 0.00024 28_[+2]_44 chrX:5984725-5984805 0.00026 2_[+2]_70 chrX:11522286-11522366 0.0003 15_[+2]_57 chrX:11474354-11474434 0.0003 29_[+2]_43 chrII:8128855-8128935 0.0003 7_[+2]_65 chrII:66508-66588 0.0003 47_[+2]_25 chrIV:14391926-14392006 0.0003 22_[+2]_50 chrX:5121927-5122007 0.00032 70_[+2]_2 chrIII:3789831-3789911 0.00032 23_[+2]_49 chrX:13584988-13585068 0.00033 12_[+2]_60 chrII:4506729-4506809 0.00036 66_[+2]_6 chrIII:13717679-13717759 0.00036 31_[+2]_41 chrX:9113958-9114038 0.00036 21_[+2]_51 chrI:10585373-10585453 0.00041 40_[+2]_32 chrV:15071439-15071519 0.00041 8_[+2]_64 chrII:2220046-2220126 0.00041 12_[+2]_60 chrI:1540561-1540641 0.00041 10_[+2]_62 chrIII:4505875-4505955 0.00041 2_[+2]_70 chrIV:8183423-8183503 0.00047 30_[+2]_42 chrII:6844845-6844925 0.00047 24_[+2]_48 chrIII:9668082-9668162 0.0005 42_[+2]_30 chrX:13144320-13144400 0.0005 4_[+2]_68 chrX:13584105-13584185 0.00061 21_[+2]_51 chrX:14312578-14312658 0.00061 61_[+2]_11 chrI:1481673-1481753 0.00061 36_[+2]_36 chrI:10175378-10175458 0.00061 10_[+2]_62 chrX:5818395-5818475 0.00061 5_[+2]_67 chrIV:5561320-5561400 0.00067 58_[+2]_14 chrI:6608107-6608187 0.00067 6_[+2]_66 chrV:8428768-8428848 0.00073 1_[+2]_71 chrIV:7486347-7486427 0.00073 21_[+2]_51 chrI:10769870-10769950 0.00078 36_[+2]_36 chrX:10597753-10597833 0.00081 68_[+2]_4 chrX:877095-877175 0.00081 5_[+2]_67 chrIV:11125379-11125459 0.0012 45_[+2]_27 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TYTCTCTS MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TYTCTCTS width=8 seqs=93 chrV:8130360-8130440 ( 25) TCTCTCTC 1 chrI:1273942-1274022 ( 52) TCTCTCTC 1 chrII:15256012-15256092 ( 24) TCTCTCTC 1 chrX:14146897-14146977 ( 66) TCTCTCTC 1 chrI:14945676-14945756 ( 4) TCTCTCTC 1 chrIII:433124-433204 ( 9) TCTCTCTC 1 chrIII:8503453-8503533 ( 28) TCTCTCTC 1 chrI:9128825-9128905 ( 45) TCTCTCTC 1 chrI:4005778-4005858 ( 8) TCTCTCTC 1 chrIII:668419-668499 ( 47) TCTCTCTC 1 chrI:3785326-3785406 ( 10) TCTCTCTC 1 chrIII:11557054-11557134 ( 46) TCTCTCTC 1 chrX:2879712-2879792 ( 53) TCTCTCTC 1 chrV:6541917-6541997 ( 59) TCTCTCTC 1 chrIII:8663257-8663337 ( 26) TCTCTCTC 1 chrV:18490611-18490691 ( 34) TCTCTCTG 1 chrV:6879707-6879787 ( 46) TCTCTCTG 1 chrI:6780157-6780237 ( 57) TCTCTCTG 1 chrIV:1055959-1056039 ( 46) TCTCTCTG 1 chrIV:14872428-14872508 ( 57) TCTCTCTG 1 chrI:2603778-2603858 ( 1) TCTCTCTG 1 chrIII:8512471-8512551 ( 32) TCTCTCTG 1 chrX:6252097-6252177 ( 12) TCTCTCTG 1 chrIV:10346083-10346163 ( 73) TTTCTCTC 1 chrV:10273926-10274006 ( 17) TTTCTCTC 1 chrIV:6646048-6646128 ( 39) TTTCTCTC 1 chrX:9068212-9068292 ( 73) TTTCTCTC 1 chrV:14177762-14177842 ( 2) TTTCTCTC 1 chrIII:8058083-8058163 ( 21) TTTCTCTC 1 chrII:13575680-13575760 ( 69) TTTCTCTG 1 chrII:1246983-1247063 ( 57) TTTCTCTG 1 chrIV:51480-51560 ( 25) TTTCTCTG 1 chrIV:8782283-8782363 ( 14) TTTCTCTG 1 chrV:18723773-18723853 ( 1) TTTCTCTG 1 chrIII:558999-559079 ( 67) TTTCTCTG 1 chrI:2831500-2831580 ( 63) TTTCTCTG 1 chrIV:1168693-1168773 ( 3) TCTCACTC 1 chrV:3703991-3704071 ( 17) TCTCACTC 1 chrII:7892056-7892136 ( 9) TCTCACTC 1 chrIII:7570453-7570533 ( 12) TCTCACTG 1 chrI:10035056-10035136 ( 51) TCTCACTG 1 chrIV:6576898-6576978 ( 35) TCTCCCTC 1 chrIV:3636791-3636871 ( 39) TCTCCCTC 1 chrI:9077407-9077487 ( 18) TCTCTTTC 1 chrX:13155690-13155770 ( 16) TCTCACTG 1 chrX:12629410-12629490 ( 19) TCTCACTG 1 chrX:9102272-9102352 ( 7) TCTCCCTC 1 chrII:11293535-11293615 ( 22) TTTCACTC 1 chrX:4662639-4662719 ( 2) TTTCACTC 1 chrIII:888019-888099 ( 8) TCTCTCTT 1 chrIII:4948806-4948886 ( 5) TCTCTCTT 1 chrX:993134-993214 ( 58) TCTCCCTG 1 chrI:11554630-11554710 ( 30) TCTCCCTG 1 chrX:7809704-7809784 ( 36) TTTCCCTC 1 chrX:11262469-11262549 ( 3) TTTCTTTC 1 chrI:1271141-1271221 ( 67) TTTCCCTC 1 chrII:11567329-11567409 ( 57) TCTCTCCC 1 chrIII:4037443-4037523 ( 14) TTTCCCTC 1 chrI:4320845-4320925 ( 29) TCTCTCCC 1 chrX:5984725-5984805 ( 3) TTTCTCTT 1 chrX:11522286-11522366 ( 16) TTTCTTTG 1 chrX:11474354-11474434 ( 30) TTTCTTTG 1 chrII:8128855-8128935 ( 8) TCTCTCCG 1 chrII:66508-66588 ( 48) TTTCTTTG 1 chrIV:14391926-14392006 ( 23) TTTCCCTG 1 chrX:5121927-5122007 ( 71) TTTCTCCC 1 chrIII:3789831-3789911 ( 24) TTTCTCCC 1 chrX:13584988-13585068 ( 13) TCTCATTC 1 chrII:4506729-4506809 ( 67) TCTCACTT 1 chrIII:13717679-13717759 ( 32) TCTCACTT 1 chrX:9113958-9114038 ( 22) TCTCACTT 1 chrI:10585373-10585453 ( 41) TCTGTCTC 1 chrV:15071439-15071519 ( 9) TCTCATTG 1 chrII:2220046-2220126 ( 13) TCTCATTG 1 chrI:1540561-1540641 ( 11) TCTCCTTC 1 chrIII:4505875-4505955 ( 3) TCTGTCTC 1 chrIV:8183423-8183503 ( 31) TCTCACCC 1 chrII:6844845-6844925 ( 25) TTTCATTC 1 chrIII:9668082-9668162 ( 43) TCTGTCTG 1 chrX:13144320-13144400 ( 5) TCTCCTTG 1 chrX:13584105-13584185 ( 22) TCTCCCCC 1 chrX:14312578-14312658 ( 62) TCTCTTCC 1 chrI:1481673-1481753 ( 37) TCTCCCCC 1 chrI:10175378-10175458 ( 11) TTTCCTTC 1 chrX:5818395-5818475 ( 6) TCTCACCG 1 chrIV:5561320-5561400 ( 59) TTTCCCTT 1 chrI:6608107-6608187 ( 7) TTTCTTTT 1 chrV:8428768-8428848 ( 2) TCTCTTCG 1 chrIV:7486347-7486427 ( 22) TTTGTCTG 1 chrI:10769870-10769950 ( 37) TTTCTTCC 1 chrX:10597753-10597833 ( 69) TCTGACTC 1 chrX:877095-877175 ( 6) TGTCTCTC 1 chrIV:11125379-11125459 ( 46) CCTCTCTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TYTCTCTS MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.50978 E= 5.5e-037 -1318 -461 -1318 204 -1318 130 -462 52 -1318 -1318 -1318 206 -1318 185 -230 -1318 -19 -70 -1318 140 -1318 166 -1318 -48 -1318 -103 -1318 186 -1318 106 47 -148 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TYTCTCTS MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 93 E= 5.5e-037 0.000000 0.010753 0.000000 0.989247 0.000000 0.645161 0.010753 0.344086 0.000000 0.000000 0.000000 1.000000 0.000000 0.946237 0.053763 0.000000 0.204301 0.161290 0.000000 0.634409 0.000000 0.827957 0.000000 0.172043 0.000000 0.129032 0.000000 0.870968 0.000000 0.548387 0.365591 0.086022 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TYTCTCTS MEME-2 regular expression -------------------------------------------------------------------------------- T[CT]TC[TA]CT[CG] -------------------------------------------------------------------------------- Time 15.65 secs. ******************************************************************************** ******************************************************************************** MOTIF CTKCBTCT MEME-3 width = 8 sites = 61 llr = 457 E-value = 3.0e-007 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTKCBTCT MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C a3283:9: probability G ::5:4::: matrix T :7323a1a bits 2.1 * * 1.9 * * * 1.7 * * * 1.5 * *** Relative 1.3 ** * *** Entropy 1.1 ** * *** (10.8 bits) 0.8 ** * *** 0.6 ** * *** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CTGCGTCT consensus CT C sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTKCBTCT MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrV:3703991-3704071 46 1.75e-05 GCCCGTCCGT CTGCGTCT CCGTGGTCTC chrI:2864107-2864187 35 1.75e-05 CTCCACGTGT CTGCGTCT CCACCTCGTC chrIII:1926584-1926664 5 1.75e-05 CTCT CTGCGTCT CTCGAACCGT chrII:6858970-6859050 60 1.75e-05 CCGAATTGCG CTGCGTCT ATACAGGTAC chrI:13373042-13373122 37 1.75e-05 ACAGTGTACT CTGCGTCT CTTCAATTCC chrII:11567329-11567409 34 1.75e-05 GCGTTTGCGT CTGCGTCT CTTAGTCTCG chrI:6780157-6780237 26 1.75e-05 TGTCGATTGC CTGCGTCT CTGTGTCAAG chrI:9077407-9077487 50 1.75e-05 GTCTACGTAT CTGCGTCT CGCATGCTTG chrV:8428768-8428848 41 1.75e-05 GTCAAAATCC CTGCGTCT CTAAATCTCT chrIII:2304954-2305034 55 1.75e-05 GAGGAGATGT CTGCGTCT CCTAATTGCC chrI:11554630-11554710 60 1.75e-05 CGCAATCTGT CTGCGTCT CTTTTATCTG chrIV:14872428-14872508 33 1.75e-05 GGATAAGTCT CTGCGTCT CCACACGGAT chrIV:11125379-11125459 6 1.75e-05 AGTGT CTGCGTCT CTCCATTTCC chrI:8783831-8783911 70 1.75e-05 GTTTGTATAC CTGCGTCT CAT chrX:5818395-5818475 39 1.75e-05 TTCCTGACCG CTGCGTCT CTCGGCTTTC chrIII:8503453-8503533 37 4.94e-05 ctctctctct ctgcttct ctctctctgc chrII:2849468-2849548 37 4.94e-05 tcgtagtagt cttcgtct tTTTTCGTGG chrI:1069995-1070075 1 8.13e-05 . cttcttct tGCTTGCCGC chrI:10769870-10769950 29 8.13e-05 TGGCCATTCC CTTCTTCT TTTCTTCCAC chrV:9692363-9692443 21 8.13e-05 cttctttttt cttcttct CATCGCTCGG chrIV:11871340-11871420 72 8.13e-05 TCATGCTTTG CTTCTTCT T chrIII:9818960-9819040 12 9.72e-05 GTCTGTTATT CTTCCTCT TCTCAAGTCG chrX:2432602-2432682 7 9.72e-05 CGTCCT CTTCCTCT CCTCCCGACT chrX:9068212-9068292 50 9.72e-05 AAAATCCTTT CTTCCTCT CCTCTTTCTA chrX:5686251-5686331 39 1.15e-04 TGTCAATGTC CTCCGTCT ACCGCACCCT chrIV:9196937-9197017 41 1.15e-04 CGCCATCCTT CTCCGTCT CCAATGTCTC chrIV:1420283-1420363 48 1.50e-04 CGACGCGCAA CCGCGTCT CGAGTGTGCA chrIV:6646048-6646128 5 1.50e-04 CAAC CTCCTTCT CCCTCTCTCC chrV:6246765-6246845 70 1.67e-04 CTCAGTTTGC CTCCCTCT TCT chrIII:668419-668499 58 1.67e-04 ctctctctct ctccctct ctgtctcAGG chrX:2879712-2879792 13 1.67e-04 GCCAGCAGCG CTCCCTCT TACCGCTCAC chrIV:12771583-12771663 64 2.02e-04 GATCTTCGCA CCGCTTCT GGTGTGCCC chrIII:4947448-4947528 36 2.02e-04 GCGCGCCTCG CCTCGTCT CGCCATAACC chrX:1319938-1320018 12 2.02e-04 GCCAGCGGCC CCTCGTCT TCGCTCATAC chrIII:6137625-6137705 18 2.02e-04 CCCTTTCCGG CCGCTTCT TTCCTCAGTC chrIII:12369663-12369743 27 2.02e-04 GAAATGCGTG CCGCTTCT CTGCGGTCTC chrIII:558999-559079 11 2.37e-04 GTCACCTGTA CCTCTTCT TGGCGGGAGA chrIV:8627467-8627547 15 2.70e-04 TGTCCGCGCT CCTCCTCT TCACCACCAT chrI:1481673-1481753 50 2.70e-04 CCCCCCCCCC CCTCCTCT CCTTTTGCAC chrIV:7486347-7486427 43 2.70e-04 CACAGAGTCT CTGTGTCT CAAATTTACA chrV:13396521-13396601 7 2.70e-04 CATCCC CCTCCTCT TCGTTTTGCC chrIV:7320112-7320192 58 3.00e-04 GCGTAtgttt ctgtttct gttctgcggc chrI:10035056-10035136 63 3.35e-04 TCACTGTCGT CTGTCTCT TCGCTCATGG chrII:15256012-15256092 13 3.35e-04 TTTCAtcttt ctgtctct ctctctctct chrX:11798176-11798256 19 3.64e-04 CCGGGCACGT CTTTTTCT ACTTCGTGTC chrIV:51480-51560 34 3.64e-04 ATTTCTCTGA CTTTTTCT TTGTGACCGC chrII:7892056-7892136 45 3.96e-04 TTCCTCCGTC CCCCTTCT CAGTCGGAAA chrII:6491964-6492044 31 4.44e-04 CCTCCTCATT CTTCGTTT CGTCCGCTGT chrV:9561867-9561947 7 4.44e-04 TGCGCG CTGCTTTT GCACCCCTCT chrI:11095784-11095864 10 4.44e-04 TGCGCGCTT CCCCCTCT CACCACGTAG chrIII:8663257-8663337 49 4.44e-04 ctctctacct ccccctct ctctGTAATT chrII:9574573-9574653 68 4.44e-04 ATAATTGAGT CCCCCTCT CTACC chrI:4005778-4005858 38 4.89e-04 GGTTTCCTCT CTTCTTTT CCGCATCATT chrX:4662639-4662719 20 5.03e-04 CAAAATGTCT CTTCCTTT CCCTGTTATG chrIV:3636791-3636871 65 5.03e-04 GCGCGCTCTG CTTCCTTT GGGGCCCC chrI:10175378-10175458 19 5.03e-04 TCTTTCCTTC CTTCCTTT CCCGCCACGC chrV:8130360-8130440 15 5.35e-04 ATGGCCGTGG CCGTGTCT TTTCTCTCTC chrII:66508-66588 4 5.35e-04 ACA CTCTTTCT ACGTTATATT chrII:6868121-6868201 52 5.99e-04 ACTCGTCCTT CCGTTTCT GAACTAATGA chrIII:8512471-8512551 43 5.99e-04 CTCTCTGCCC CTCCGTTT CCCCTTTTCC chrIII:433124-433204 66 6.17e-04 TTTCGCCCAG CCGTCTCT ATTCTCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTKCBTCT MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:3703991-3704071 1.8e-05 45_[+3]_27 chrI:2864107-2864187 1.8e-05 34_[+3]_38 chrIII:1926584-1926664 1.8e-05 4_[+3]_68 chrII:6858970-6859050 1.8e-05 59_[+3]_13 chrI:13373042-13373122 1.8e-05 36_[+3]_36 chrII:11567329-11567409 1.8e-05 33_[+3]_39 chrI:6780157-6780237 1.8e-05 25_[+3]_47 chrI:9077407-9077487 1.8e-05 49_[+3]_23 chrV:8428768-8428848 1.8e-05 40_[+3]_32 chrIII:2304954-2305034 1.8e-05 54_[+3]_18 chrI:11554630-11554710 1.8e-05 59_[+3]_13 chrIV:14872428-14872508 1.8e-05 32_[+3]_40 chrIV:11125379-11125459 1.8e-05 5_[+3]_67 chrI:8783831-8783911 1.8e-05 69_[+3]_3 chrX:5818395-5818475 1.8e-05 38_[+3]_34 chrIII:8503453-8503533 4.9e-05 36_[+3]_36 chrII:2849468-2849548 4.9e-05 36_[+3]_36 chrI:1069995-1070075 8.1e-05 [+3]_72 chrI:10769870-10769950 8.1e-05 28_[+3]_44 chrV:9692363-9692443 8.1e-05 20_[+3]_52 chrIV:11871340-11871420 8.1e-05 71_[+3]_1 chrIII:9818960-9819040 9.7e-05 11_[+3]_61 chrX:2432602-2432682 9.7e-05 6_[+3]_66 chrX:9068212-9068292 9.7e-05 49_[+3]_23 chrX:5686251-5686331 0.00011 38_[+3]_34 chrIV:9196937-9197017 0.00011 40_[+3]_32 chrIV:1420283-1420363 0.00015 47_[+3]_25 chrIV:6646048-6646128 0.00015 4_[+3]_68 chrV:6246765-6246845 0.00017 69_[+3]_3 chrIII:668419-668499 0.00017 57_[+3]_15 chrX:2879712-2879792 0.00017 12_[+3]_60 chrIV:12771583-12771663 0.0002 63_[+3]_9 chrIII:4947448-4947528 0.0002 35_[+3]_37 chrX:1319938-1320018 0.0002 11_[+3]_61 chrIII:6137625-6137705 0.0002 17_[+3]_55 chrIII:12369663-12369743 0.0002 26_[+3]_46 chrIII:558999-559079 0.00024 10_[+3]_62 chrIV:8627467-8627547 0.00027 14_[+3]_58 chrI:1481673-1481753 0.00027 49_[+3]_23 chrIV:7486347-7486427 0.00027 42_[+3]_30 chrV:13396521-13396601 0.00027 6_[+3]_66 chrIV:7320112-7320192 0.0003 57_[+3]_15 chrI:10035056-10035136 0.00033 62_[+3]_10 chrII:15256012-15256092 0.00033 12_[+3]_60 chrX:11798176-11798256 0.00036 18_[+3]_54 chrIV:51480-51560 0.00036 33_[+3]_39 chrII:7892056-7892136 0.0004 44_[+3]_28 chrII:6491964-6492044 0.00044 30_[+3]_42 chrV:9561867-9561947 0.00044 6_[+3]_66 chrI:11095784-11095864 0.00044 9_[+3]_63 chrIII:8663257-8663337 0.00044 48_[+3]_24 chrII:9574573-9574653 0.00044 67_[+3]_5 chrI:4005778-4005858 0.00049 37_[+3]_35 chrX:4662639-4662719 0.0005 19_[+3]_53 chrIV:3636791-3636871 0.0005 64_[+3]_8 chrI:10175378-10175458 0.0005 18_[+3]_54 chrV:8130360-8130440 0.00054 14_[+3]_58 chrII:66508-66588 0.00054 3_[+3]_69 chrII:6868121-6868201 0.0006 51_[+3]_21 chrIII:8512471-8512551 0.0006 42_[+3]_30 chrIII:433124-433204 0.00062 65_[+3]_7 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTKCBTCT MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTKCBTCT width=8 seqs=61 chrV:3703991-3704071 ( 46) CTGCGTCT 1 chrI:2864107-2864187 ( 35) CTGCGTCT 1 chrIII:1926584-1926664 ( 5) CTGCGTCT 1 chrII:6858970-6859050 ( 60) CTGCGTCT 1 chrI:13373042-13373122 ( 37) CTGCGTCT 1 chrII:11567329-11567409 ( 34) CTGCGTCT 1 chrI:6780157-6780237 ( 26) CTGCGTCT 1 chrI:9077407-9077487 ( 50) CTGCGTCT 1 chrV:8428768-8428848 ( 41) CTGCGTCT 1 chrIII:2304954-2305034 ( 55) CTGCGTCT 1 chrI:11554630-11554710 ( 60) CTGCGTCT 1 chrIV:14872428-14872508 ( 33) CTGCGTCT 1 chrIV:11125379-11125459 ( 6) CTGCGTCT 1 chrI:8783831-8783911 ( 70) CTGCGTCT 1 chrX:5818395-5818475 ( 39) CTGCGTCT 1 chrIII:8503453-8503533 ( 37) CTGCTTCT 1 chrII:2849468-2849548 ( 37) CTTCGTCT 1 chrI:1069995-1070075 ( 1) CTTCTTCT 1 chrI:10769870-10769950 ( 29) CTTCTTCT 1 chrV:9692363-9692443 ( 21) CTTCTTCT 1 chrIV:11871340-11871420 ( 72) CTTCTTCT 1 chrIII:9818960-9819040 ( 12) CTTCCTCT 1 chrX:2432602-2432682 ( 7) CTTCCTCT 1 chrX:9068212-9068292 ( 50) CTTCCTCT 1 chrX:5686251-5686331 ( 39) CTCCGTCT 1 chrIV:9196937-9197017 ( 41) CTCCGTCT 1 chrIV:1420283-1420363 ( 48) CCGCGTCT 1 chrIV:6646048-6646128 ( 5) CTCCTTCT 1 chrV:6246765-6246845 ( 70) CTCCCTCT 1 chrIII:668419-668499 ( 58) CTCCCTCT 1 chrX:2879712-2879792 ( 13) CTCCCTCT 1 chrIV:12771583-12771663 ( 64) CCGCTTCT 1 chrIII:4947448-4947528 ( 36) CCTCGTCT 1 chrX:1319938-1320018 ( 12) CCTCGTCT 1 chrIII:6137625-6137705 ( 18) CCGCTTCT 1 chrIII:12369663-12369743 ( 27) CCGCTTCT 1 chrIII:558999-559079 ( 11) CCTCTTCT 1 chrIV:8627467-8627547 ( 15) CCTCCTCT 1 chrI:1481673-1481753 ( 50) CCTCCTCT 1 chrIV:7486347-7486427 ( 43) CTGTGTCT 1 chrV:13396521-13396601 ( 7) CCTCCTCT 1 chrIV:7320112-7320192 ( 58) CTGTTTCT 1 chrI:10035056-10035136 ( 63) CTGTCTCT 1 chrII:15256012-15256092 ( 13) CTGTCTCT 1 chrX:11798176-11798256 ( 19) CTTTTTCT 1 chrIV:51480-51560 ( 34) CTTTTTCT 1 chrII:7892056-7892136 ( 45) CCCCTTCT 1 chrII:6491964-6492044 ( 31) CTTCGTTT 1 chrV:9561867-9561947 ( 7) CTGCTTTT 1 chrI:11095784-11095864 ( 10) CCCCCTCT 1 chrIII:8663257-8663337 ( 49) CCCCCTCT 1 chrII:9574573-9574653 ( 68) CCCCCTCT 1 chrI:4005778-4005858 ( 38) CTTCTTTT 1 chrX:4662639-4662719 ( 20) CTTCCTTT 1 chrIV:3636791-3636871 ( 65) CTTCCTTT 1 chrI:10175378-10175458 ( 19) CTTCCTTT 1 chrV:8130360-8130440 ( 15) CCGTGTCT 1 chrII:66508-66588 ( 4) CTCTTTCT 1 chrII:6868121-6868201 ( 52) CCGTTTCT 1 chrIII:8512471-8512551 ( 43) CTCCGTTT 1 chrIII:433124-433204 ( 66) CCGTCTCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTKCBTCT MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.50978 E= 3.0e-007 -1257 193 -1257 -1257 -1257 9 -1257 159 -1257 -42 80 52 -1257 167 -1257 -55 -1257 17 63 30 -1257 -1257 -1257 206 -1257 175 -1257 -107 -1257 -1257 -1257 206 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTKCBTCT MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 61 E= 3.0e-007 0.000000 1.000000 0.000000 0.000000 0.000000 0.278689 0.000000 0.721311 0.000000 0.196721 0.459016 0.344262 0.000000 0.836066 0.000000 0.163934 0.000000 0.295082 0.409836 0.295082 0.000000 0.000000 0.000000 1.000000 0.000000 0.885246 0.000000 0.114754 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTKCBTCT MEME-3 regular expression -------------------------------------------------------------------------------- C[TC][GT]C[GCT]TCT -------------------------------------------------------------------------------- Time 19.19 secs. ******************************************************************************** ******************************************************************************** MOTIF GCGCGCGC MEME-4 width = 8 sites = 29 llr = 257 E-value = 1.3e-004 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCGCGCGC MEME-4 Description -------------------------------------------------------------------------------- Simplified A ::1:::1: pos.-specific C :8:a1a:a probability G 9:9:9:8: matrix T 12:::::: bits 2.1 1.9 * * * 1.7 * * * 1.5 * **** * Relative 1.3 ******** Entropy 1.1 ******** (12.8 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GCGCGCGC consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCGCGC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIV:1420283-1420363 27 2.32e-05 GCAGTGAAGC GCGCGCGC ACGCGACGCG chrIV:7320112-7320192 38 2.32e-05 AGAAAGAGGC GCGCGCGC ACGCGTAtgt chrIII:10094752-10094832 5 2.32e-05 CGCC GCGCGCGC AAACACAGAC chrIV:3636791-3636871 53 2.32e-05 CCTCGCACGC GCGCGCGC TCTGCTTCCT chrX:8163713-8163793 31 2.32e-05 GGTCGCGCAA GCGCGCGC CTCCTAGTTG chrIII:7659644-7659724 64 2.32e-05 CTGTGAGTGA GCGCGCGC TCGCGTTTT chrIII:4947448-4947528 24 2.32e-05 CTGTTTGCGC GCGCGCGC CTCGCCTCGT chrI:10407666-10407746 65 2.32e-05 TGGTCGTTGC GCGCGCGC GAGCGACA chrX:16591671-16591751 37 2.32e-05 GACGGACGgc gcgcgcgc gcgcgcgGAA chrIII:8794911-8794991 6 2.32e-05 GGAGC GCGCGCGC GCGAGTGTGA chrI:2831500-2831580 20 2.32e-05 GGTGGTGTAT GCGCGCGC TGTCGGTAGT chrII:3055701-3055781 33 2.32e-05 ACAAGACAAC GCGCGCGC ACGTTCTCTG chrIV:5860895-5860975 1 2.32e-05 . GCGCGCGC CCCCCGCATG chrV:10715896-10715976 36 4.44e-05 CGGCAGACGG GTGCGCGC TCGTCTCGCG chrX:15566798-15566878 22 4.44e-05 CGCGAAAAAT GTGCGCGC GGGGGGGGGG chrX:4662639-4662719 67 4.44e-05 TCGTCAGACA GTGCGCGC ATACAA chrI:7711801-7711881 13 4.44e-05 TGCGCAAGCT GTGCGCGC AAGTGGTAGT chrII:12778544-12778624 4 4.44e-05 TCC GTGCGCGC CTCTCCACTT chrV:6879707-6879787 19 6.50e-05 TGCATCTTTT GCGCGCAC CAACGGTCCT chrX:1319938-1320018 65 6.50e-05 CAACACACAC GCGCGCAC CGAGGCAC chrIV:10817235-10817315 4 6.50e-05 AAC GCGCGCAC GCGGGCAATC chrX:12629410-12629490 55 6.50e-05 CTACGCGCAC GCGCGCAC GTTAGCCACT chrV:9561867-9561947 26 8.55e-05 CACCCCTCTC GCACGCGC ATATAAGGGG chrII:11567329-11567409 49 1.07e-04 TCTCTTAGTC TCGCGCGC TCTCTCCCTA chrI:7217461-7217541 45 1.07e-04 ACCGTACCGT TCGCGCGC AACACACCGT chrI:10035056-10035136 34 1.30e-04 GCCGTCAGAC GCGCCCGC TCACTGCCGT chrII:13575680-13575760 11 1.70e-04 GCGTCAGCAA GCGCGCTC TATCGATTCC chrIV:14872428-14872508 4 1.88e-04 ACA GTACGCGC GTCCATAGGT chrIV:3233592-3233672 39 2.29e-04 ACGCAAGTGT GTGCCCGC GGGCCGGTCC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCGCGC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:1420283-1420363 2.3e-05 26_[+4]_46 chrIV:7320112-7320192 2.3e-05 37_[+4]_35 chrIII:10094752-10094832 2.3e-05 4_[+4]_68 chrIV:3636791-3636871 2.3e-05 52_[+4]_20 chrX:8163713-8163793 2.3e-05 30_[+4]_42 chrIII:7659644-7659724 2.3e-05 63_[+4]_9 chrIII:4947448-4947528 2.3e-05 23_[+4]_49 chrI:10407666-10407746 2.3e-05 64_[+4]_8 chrX:16591671-16591751 2.3e-05 36_[+4]_36 chrIII:8794911-8794991 2.3e-05 5_[+4]_67 chrI:2831500-2831580 2.3e-05 19_[+4]_53 chrII:3055701-3055781 2.3e-05 32_[+4]_40 chrIV:5860895-5860975 2.3e-05 [+4]_72 chrV:10715896-10715976 4.4e-05 35_[+4]_37 chrX:15566798-15566878 4.4e-05 21_[+4]_51 chrX:4662639-4662719 4.4e-05 66_[+4]_6 chrI:7711801-7711881 4.4e-05 12_[+4]_60 chrII:12778544-12778624 4.4e-05 3_[+4]_69 chrV:6879707-6879787 6.5e-05 18_[+4]_54 chrX:1319938-1320018 6.5e-05 64_[+4]_8 chrIV:10817235-10817315 6.5e-05 3_[+4]_69 chrX:12629410-12629490 6.5e-05 54_[+4]_18 chrV:9561867-9561947 8.5e-05 25_[+4]_47 chrII:11567329-11567409 0.00011 48_[+4]_24 chrI:7217461-7217541 0.00011 44_[+4]_28 chrI:10035056-10035136 0.00013 33_[+4]_39 chrII:13575680-13575760 0.00017 10_[+4]_62 chrIV:14872428-14872508 0.00019 3_[+4]_69 chrIV:3233592-3233672 0.00023 38_[+4]_34 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCGCGC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCGCGCGC width=8 seqs=29 chrIV:1420283-1420363 ( 27) GCGCGCGC 1 chrIV:7320112-7320192 ( 38) GCGCGCGC 1 chrIII:10094752-10094832 ( 5) GCGCGCGC 1 chrIV:3636791-3636871 ( 53) GCGCGCGC 1 chrX:8163713-8163793 ( 31) GCGCGCGC 1 chrIII:7659644-7659724 ( 64) GCGCGCGC 1 chrIII:4947448-4947528 ( 24) GCGCGCGC 1 chrI:10407666-10407746 ( 65) GCGCGCGC 1 chrX:16591671-16591751 ( 37) GCGCGCGC 1 chrIII:8794911-8794991 ( 6) GCGCGCGC 1 chrI:2831500-2831580 ( 20) GCGCGCGC 1 chrII:3055701-3055781 ( 33) GCGCGCGC 1 chrIV:5860895-5860975 ( 1) GCGCGCGC 1 chrV:10715896-10715976 ( 36) GTGCGCGC 1 chrX:15566798-15566878 ( 22) GTGCGCGC 1 chrX:4662639-4662719 ( 67) GTGCGCGC 1 chrI:7711801-7711881 ( 13) GTGCGCGC 1 chrII:12778544-12778624 ( 4) GTGCGCGC 1 chrV:6879707-6879787 ( 19) GCGCGCAC 1 chrX:1319938-1320018 ( 65) GCGCGCAC 1 chrIV:10817235-10817315 ( 4) GCGCGCAC 1 chrX:12629410-12629490 ( 55) GCGCGCAC 1 chrV:9561867-9561947 ( 26) GCACGCGC 1 chrII:11567329-11567409 ( 49) TCGCGCGC 1 chrI:7217461-7217541 ( 45) TCGCGCGC 1 chrI:10035056-10035136 ( 34) GCGCCCGC 1 chrII:13575680-13575760 ( 11) GCGCGCTC 1 chrIV:14872428-14872508 ( 4) GTACGCGC 1 chrIV:3233592-3233672 ( 39) GTGCCCGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCGCGC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.93691 E= 1.3e-004 -1150 -1150 182 -180 -1150 153 -1150 1 -175 -1150 182 -1150 -1150 193 -1150 -1150 -1150 -193 182 -1150 -1150 193 -1150 -1150 -75 -1150 165 -280 -1150 193 -1150 -1150 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCGCGC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 29 E= 1.3e-004 0.000000 0.000000 0.931034 0.068966 0.000000 0.758621 0.000000 0.241379 0.068966 0.000000 0.931034 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.068966 0.931034 0.000000 0.000000 1.000000 0.000000 0.000000 0.137931 0.000000 0.827586 0.034483 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCGCGC MEME-4 regular expression -------------------------------------------------------------------------------- G[CT]GCGCGC -------------------------------------------------------------------------------- Time 22.60 secs. ******************************************************************************** ******************************************************************************** MOTIF ACACAGAM MEME-5 width = 8 sites = 37 llr = 294 E-value = 3.0e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif ACACAGAM MEME-5 Description -------------------------------------------------------------------------------- Simplified A a:7:a:a3 pos.-specific C :8:9:2:5 probability G :231:6:1 matrix T :::::2:: bits 2.1 * * * 1.9 * * * 1.7 * * * 1.5 * ** * Relative 1.3 ***** * Entropy 1.1 ***** * (11.5 bits) 0.8 ***** * 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel ACACAGAC consensus G A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACACAGAM MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrII:6858970-6859050 26 1.42e-05 AAGATCGTCG ACACAGAC GTAGAGCGAC chrIII:10094752-10094832 15 1.42e-05 GCGCGCGCAA ACACAGAC ACCCTAGCCG chrIV:10817235-10817315 64 1.42e-05 TGTCTCCGCA ACACAGAC CCCAACCCG chrI:11095784-11095864 51 2.67e-05 GAGACCGGAG ACACAGAA AGCAACGAGA chrX:9822752-9822832 51 2.67e-05 GCCCCTGAGA ACACAGAA CACAGCAAGA chrV:13396521-13396601 55 2.67e-05 ACATACGCAT ACACAGAA GCGAAGAAGG chrX:15566798-15566878 67 6.97e-05 AGTGCGCAGC ACACATAC ATAGCA chrX:2885487-2885567 20 6.97e-05 TGACCACACC ACACATAC GCACACACTG chrII:15256012-15256092 68 6.97e-05 CGCCAAATAC ACACATAC ACTTA chrX:14312578-14312658 15 6.97e-05 AAAAGTGCAG ACGCAGAC ACACCAATTG chrX:1319938-1320018 57 6.97e-05 CGACGCTGCA ACACACAC GCGCGCACCG chrI:7861616-7861696 71 6.97e-05 GATTCCTCTC ACGCAGAC AA chrIII:12369663-12369743 2 6.97e-05 A ACACACAC TATTTCCGAA chrX:9941548-9941628 42 6.97e-05 GGCACATGAG ACGCAGAC AGTTGAGGGA chrIII:8794911-8794991 45 6.97e-05 GAGAGTAGAG ACGCAGAC AAATAGTGGT chrI:2603778-2603858 65 6.97e-05 TCTGCcaaac acacacac tcgcacac chrI:7969029-7969109 1 6.97e-05 . ACACATAC ACATATGTTG chrIII:3273234-3273314 70 8.39e-05 aggagaCAAC ACACAGAG TCC chrV:9856669-9856749 11 8.39e-05 AACATACGAA ACACAGAG GCATGTCTTG chrI:4673968-4674048 8 8.39e-05 ATGGAGG ACACAGAG GAACGAAACG chrIV:7486347-7486427 32 8.39e-05 TTTGTCTGCG ACACAGAG TCTCTGTGTC chrX:10395932-10396012 27 1.36e-04 ATTTGAGGAA ACGCAGAA ACGGAGAGAC chrII:15263206-15263286 32 1.36e-04 GTGCGAAGAG ACGCAGAA CGTCTCGCAT chrII:9574573-9574653 54 1.36e-04 TACCTAACTA ACACATAA TTGAGTCCCC chrI:1069995-1070075 61 1.49e-04 GTGCATGTGC AGACAGAA GATGGAGGAG chrX:4265752-4265832 16 1.49e-04 AACAGCCCGT AGACAGAA GAGACGCAGA chrV:10273926-10274006 5 1.94e-04 GAAA ACAGAGAC TCTCTTTCTC chrI:4320845-4320925 18 2.37e-04 CAAATCGGCA ACACATAG TACTCTCTCC chrIV:7320112-7320192 12 2.80e-04 TCTCATTTTC AGGCAGAC CGACGGAGAG chrIV:51480-51560 14 2.80e-04 TATGGCCCCT AGACACAC CGATTTCTCT chrII:11185166-11185246 2 2.80e-04 C AGACATAC GTGTACTGAC chrIII:9052687-9052767 43 2.80e-04 GGCTGATGCG AGACACAC CCGGGCGCCA chrIII:3820294-3820374 17 2.80e-04 GTGGGGTTAG AGGCAGAC GACGAAAGAG chrII:12222709-12222789 37 3.07e-04 AGGGAAAACG ACGCACAA GTCTTTGCTG chrX:993134-993214 8 3.07e-04 AGAGAAA ACGCACAA AGAGCCGATG chrIII:7116820-7116900 25 3.34e-04 GCAAGAGACG ACAGAGAA AAGATTGAGT chrIV:5754169-5754249 51 3.34e-04 GAAGAGACCG ACAGAGAA ATGCGAGAAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACACAGAM MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:6858970-6859050 1.4e-05 25_[+5]_47 chrIII:10094752-10094832 1.4e-05 14_[+5]_58 chrIV:10817235-10817315 1.4e-05 63_[+5]_9 chrI:11095784-11095864 2.7e-05 50_[+5]_22 chrX:9822752-9822832 2.7e-05 50_[+5]_22 chrV:13396521-13396601 2.7e-05 54_[+5]_18 chrX:15566798-15566878 7e-05 66_[+5]_6 chrX:2885487-2885567 7e-05 19_[+5]_53 chrII:15256012-15256092 7e-05 67_[+5]_5 chrX:14312578-14312658 7e-05 14_[+5]_58 chrX:1319938-1320018 7e-05 56_[+5]_16 chrI:7861616-7861696 7e-05 70_[+5]_2 chrIII:12369663-12369743 7e-05 1_[+5]_71 chrX:9941548-9941628 7e-05 41_[+5]_31 chrIII:8794911-8794991 7e-05 44_[+5]_28 chrI:2603778-2603858 7e-05 64_[+5]_8 chrI:7969029-7969109 7e-05 [+5]_72 chrIII:3273234-3273314 8.4e-05 69_[+5]_3 chrV:9856669-9856749 8.4e-05 10_[+5]_62 chrI:4673968-4674048 8.4e-05 7_[+5]_65 chrIV:7486347-7486427 8.4e-05 31_[+5]_41 chrX:10395932-10396012 0.00014 26_[+5]_46 chrII:15263206-15263286 0.00014 31_[+5]_41 chrII:9574573-9574653 0.00014 53_[+5]_19 chrI:1069995-1070075 0.00015 60_[+5]_12 chrX:4265752-4265832 0.00015 15_[+5]_57 chrV:10273926-10274006 0.00019 4_[+5]_68 chrI:4320845-4320925 0.00024 17_[+5]_55 chrIV:7320112-7320192 0.00028 11_[+5]_61 chrIV:51480-51560 0.00028 13_[+5]_59 chrII:11185166-11185246 0.00028 1_[+5]_71 chrIII:9052687-9052767 0.00028 42_[+5]_30 chrIII:3820294-3820374 0.00028 16_[+5]_56 chrII:12222709-12222789 0.00031 36_[+5]_36 chrX:993134-993214 0.00031 7_[+5]_65 chrIII:7116820-7116900 0.00033 24_[+5]_48 chrIV:5754169-5754249 0.00033 50_[+5]_22 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACACAGAM MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ACACAGAM width=8 seqs=37 chrII:6858970-6859050 ( 26) ACACAGAC 1 chrIII:10094752-10094832 ( 15) ACACAGAC 1 chrIV:10817235-10817315 ( 64) ACACAGAC 1 chrI:11095784-11095864 ( 51) ACACAGAA 1 chrX:9822752-9822832 ( 51) ACACAGAA 1 chrV:13396521-13396601 ( 55) ACACAGAA 1 chrX:15566798-15566878 ( 67) ACACATAC 1 chrX:2885487-2885567 ( 20) ACACATAC 1 chrII:15256012-15256092 ( 68) ACACATAC 1 chrX:14312578-14312658 ( 15) ACGCAGAC 1 chrX:1319938-1320018 ( 57) ACACACAC 1 chrI:7861616-7861696 ( 71) ACGCAGAC 1 chrIII:12369663-12369743 ( 2) ACACACAC 1 chrX:9941548-9941628 ( 42) ACGCAGAC 1 chrIII:8794911-8794991 ( 45) ACGCAGAC 1 chrI:2603778-2603858 ( 65) ACACACAC 1 chrI:7969029-7969109 ( 1) ACACATAC 1 chrIII:3273234-3273314 ( 70) ACACAGAG 1 chrV:9856669-9856749 ( 11) ACACAGAG 1 chrI:4673968-4674048 ( 8) ACACAGAG 1 chrIV:7486347-7486427 ( 32) ACACAGAG 1 chrX:10395932-10396012 ( 27) ACGCAGAA 1 chrII:15263206-15263286 ( 32) ACGCAGAA 1 chrII:9574573-9574653 ( 54) ACACATAA 1 chrI:1069995-1070075 ( 61) AGACAGAA 1 chrX:4265752-4265832 ( 16) AGACAGAA 1 chrV:10273926-10274006 ( 5) ACAGAGAC 1 chrI:4320845-4320925 ( 18) ACACATAG 1 chrIV:7320112-7320192 ( 12) AGGCAGAC 1 chrIV:51480-51560 ( 14) AGACACAC 1 chrII:11185166-11185246 ( 2) AGACATAC 1 chrIII:9052687-9052767 ( 43) AGACACAC 1 chrIII:3820294-3820374 ( 17) AGGCAGAC 1 chrII:12222709-12222789 ( 37) ACGCACAA 1 chrX:993134-993214 ( 8) ACGCACAA 1 chrIII:7116820-7116900 ( 25) ACAGAGAA 1 chrIV:5754169-5754249 ( 51) ACAGAGAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACACAGAM MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.81773 E= 3.0e+002 210 -1185 -1185 -1185 -1185 163 -48 -1185 165 -1185 3 -1185 -1185 181 -170 -1185 210 -1185 -1185 -1185 -1185 -47 123 -35 210 -1185 -1185 -1185 48 104 -97 -1185 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACACAGAM MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 37 E= 3.0e+002 1.000000 0.000000 0.000000 0.000000 0.000000 0.810811 0.189189 0.000000 0.729730 0.000000 0.270270 0.000000 0.000000 0.918919 0.081081 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.189189 0.621622 0.189189 1.000000 0.000000 0.000000 0.000000 0.324324 0.540541 0.135135 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACACAGAM MEME-5 regular expression -------------------------------------------------------------------------------- AC[AG]CAGA[CA] -------------------------------------------------------------------------------- Time 25.92 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:8058083-8058163 3.72e-02 20_[+2(4.63e-05)]_52 chrII:9574573-9574653 3.79e-02 80 chrIII:8085512-8085592 9.83e-01 80 chrIII:8069412-8069492 9.15e-01 80 chrX:9102272-9102352 1.87e-02 80 chrX:11032036-11032116 2.43e-01 80 chrX:5818395-5818475 9.93e-03 38_[+3(1.75e-05)]_34 chrV:14177762-14177842 1.43e-03 1_[+2(4.63e-05)]_71 chrIV:14032834-14032914 2.42e-01 80 chrX:1005156-1005236 1.00e+00 80 chrV:6970198-6970278 1.24e-01 80 chrIII:8663257-8663337 1.10e-05 14_[+1(1.43e-05)]_1_[+2(1.59e-05)]_\ 22_[+2(3.18e-05)]_19 chrX:15310401-15310481 2.80e-01 80 chrV:6541917-6541997 7.35e-03 56_[+2(1.59e-05)]_16 chrI:3759181-3759261 3.45e-01 80 chrIV:5860895-5860975 1.17e-03 [+4(2.32e-05)]_72 chrIV:14391926-14392006 1.95e-01 80 chrX:12629410-12629490 4.42e-03 54_[+4(6.50e-05)]_18 chrI:4320845-4320925 5.55e-03 80 chrIV:11871340-11871420 7.78e-02 71_[+3(8.13e-05)]_1 chrI:7217461-7217541 3.03e-02 80 chrI:10232609-10232689 2.60e-01 80 chrI:8783831-8783911 2.97e-02 69_[+3(1.75e-05)]_3 chrV:9692363-9692443 1.79e-05 20_[+3(8.13e-05)]_32_[+1(3.96e-05)]_\ 4_[+1(1.43e-05)] chrX:2879712-2879792 2.28e-03 50_[+2(1.59e-05)]_22 chrIV:6646975-6647055 8.22e-01 80 chrII:12778544-12778624 4.04e-02 3_[+4(4.44e-05)]_69 chrII:3055701-3055781 1.36e-02 32_[+4(2.32e-05)]_40 chrIV:10817235-10817315 4.97e-04 3_[+4(6.50e-05)]_52_[+5(1.42e-05)]_\ 9 chrIV:9910439-9910519 2.30e-01 80 chrI:6153687-6153767 6.20e-01 80 chrIV:8066702-8066782 1.07e-01 16_[+1(8.13e-05)]_19_[+1(8.13e-05)]_\ 29 chrII:6844845-6844925 8.22e-02 80 chrX:11608183-11608263 2.86e-01 80 chrII:66508-66588 4.83e-02 80 chrX:9068212-9068292 1.62e-02 49_[+3(9.72e-05)]_15_[+2(4.63e-05)] chrIII:13182166-13182246 4.74e-01 80 chrII:7892056-7892136 2.08e-03 8_[+2(7.62e-05)]_64 chrX:6252097-6252177 1.34e-02 11_[+2(3.18e-05)]_61 chrX:12180823-12180903 4.05e-01 80 chrI:10175378-10175458 9.13e-02 80 chrIV:13013402-13013482 1.18e-01 80 chrX:17315038-17315118 2.68e-01 80 chrX:13155690-13155770 2.92e-01 80 chrIII:8512471-8512551 2.50e-02 31_[+2(3.18e-05)]_41 chrIV:6646048-6646128 1.91e-03 38_[+2(4.63e-05)]_34 chrII:2849468-2849548 1.39e-01 36_[+3(4.94e-05)]_36 chrI:2831500-2831580 5.83e-05 19_[+4(2.32e-05)]_40_[+3(1.75e-05)]_\ 5 chrIV:11125379-11125459 1.92e-02 5_[+3(1.75e-05)]_67 chrIII:11557054-11557134 2.10e-05 45_[+2(1.59e-05)]_9_[+1(1.43e-05)]_\ 10 chrV:13396521-13396601 1.58e-03 42_[+5(6.97e-05)]_4_[+5(2.67e-05)]_\ 18 chrV:13704089-13704169 2.76e-01 80 chrV:12038971-12039051 2.52e-01 80 chrIII:3820294-3820374 1.18e-01 80 chrV:12026995-12027075 6.42e-02 69_[+1(2.70e-05)]_3 chrI:7969029-7969109 2.27e-02 [+5(6.97e-05)]_47_[+1(9.39e-05)]_17 chrIII:4447799-4447879 6.56e-01 80 chrV:5065230-5065310 1.81e-01 80 chrX:10372685-10372765 3.59e-01 80 chrI:3785326-3785406 1.90e-02 7_[+2(1.59e-05)]_65 chrI:2603778-2603858 3.18e-05 5_[+3(1.75e-05)]_49_[+5(6.97e-05)]_\ 10 chrX:5275387-5275467 3.75e-01 80 chrIII:4667049-4667129 3.23e-01 80 chrIV:14872428-14872508 1.14e-04 32_[+3(1.75e-05)]_16_[+2(3.18e-05)]_\ 16 chrI:11554630-11554710 1.22e-03 59_[+3(1.75e-05)]_13 chrI:14070891-14070971 9.68e-02 61_[+1(3.96e-05)]_11 chrIII:4037443-4037523 7.12e-02 80 chrI:973165-973245 3.23e-03 33_[+1(1.43e-05)]_39 chrIV:8183423-8183503 1.72e-01 80 chrIV:7486347-7486427 5.15e-03 31_[+5(8.39e-05)]_41 chrIII:2304954-2305034 2.01e-03 54_[+3(1.75e-05)]_18 chrIV:9196937-9197017 5.88e-03 80 chrIII:7711103-7711183 4.05e-02 19_[+1(3.96e-05)]_53 chrIII:8794911-8794991 1.48e-03 3_[+4(2.32e-05)]_33_[+5(6.97e-05)]_\ 10_[+4(4.44e-05)]_10 chrI:13782066-13782146 9.22e-01 80 chrV:4810768-4810848 1.59e-01 80 chrX:9941548-9941628 3.49e-02 41_[+5(6.97e-05)]_31 chrX:16591671-16591751 4.93e-02 34_[+4(2.32e-05)]_[+4(2.32e-05)]_30 chrX:7475197-7475277 1.17e-01 80 chrI:4673968-4674048 3.87e-02 7_[+5(8.39e-05)]_65 chrIII:558999-559079 3.34e-02 66_[+2(6.08e-05)]_6 chrIII:12369663-12369743 2.33e-03 1_[+5(6.97e-05)]_71 chrIII:9052687-9052767 2.64e-01 80 chrI:10478143-10478223 2.92e-02 13_[+1(1.43e-05)]_59 chrIV:1055959-1056039 1.62e-02 45_[+2(3.18e-05)]_27 chrV:9856669-9856749 2.49e-02 10_[+5(8.39e-05)]_62 chrIV:828596-828676 9.18e-02 17_[+1(5.07e-05)]_55 chrX:993134-993214 2.76e-03 33_[+1(8.13e-05)]_39 chrI:6154460-6154540 2.13e-01 80 chrX:1064213-1064293 4.53e-01 80 chrIII:6137625-6137705 1.17e-01 80 chrX:871156-871236 2.09e-02 80 chrII:15263206-15263286 3.06e-01 80 chrIII:4948806-4948886 4.23e-02 80 chrIII:13721257-13721337 4.54e-01 80 chrI:3101923-3102003 8.52e-01 80 chrX:2552407-2552487 2.25e-01 80 chrIII:9817287-9817367 4.78e-01 80 chrII:6868121-6868201 2.72e-01 80 chrIII:4505875-4505955 7.73e-03 80 chrI:7861616-7861696 3.47e-03 70_[+5(6.97e-05)]_2 chrI:6608107-6608187 3.44e-03 34_[+1(8.13e-05)]_38 chrII:13030964-13031044 1.62e-01 80 chrX:13675598-13675678 6.07e-01 80 chrIII:3273234-3273314 7.35e-03 33_[+1(1.43e-05)]_[+1(1.43e-05)]_20_\ [+5(8.39e-05)]_3 chrIII:8513138-8513218 9.55e-01 80 chrI:1481673-1481753 1.56e-01 80 chrX:10435647-10435727 5.58e-02 32_[+1(8.13e-05)]_40 chrII:8128855-8128935 4.08e-02 80 chrIII:8070197-8070277 8.50e-01 80 chrIII:668419-668499 8.76e-03 46_[+2(1.59e-05)]_26 chrX:877095-877175 3.87e-03 80 chrV:20424437-20424517 2.20e-02 16_[+1(2.70e-05)]_56 chrI:4005778-4005858 7.35e-03 1_[+2(1.59e-05)]_[+2(1.59e-05)]_63 chrI:9128825-9128905 3.80e-02 44_[+2(1.59e-05)]_28 chrX:9113958-9114038 6.84e-02 80 chrIII:8503453-8503533 3.69e-03 27_[+2(1.59e-05)]_6_[+2(1.59e-05)]_\ 6_[+2(1.59e-05)]_[+2(1.59e-05)]_9 chrX:1319938-1320018 1.78e-04 56_[+5(6.97e-05)]_[+4(6.50e-05)]_8 chrX:9822752-9822832 5.26e-02 50_[+5(2.67e-05)]_22 chrI:4933010-4933090 6.95e-01 80 chrX:5729082-5729162 2.38e-01 80 chrX:14636769-14636849 5.13e-01 80 chrV:18723773-18723853 9.56e-05 [+2(6.08e-05)]_55_[+1(1.43e-05)]_9 chrX:5336702-5336782 4.64e-01 80 chrV:8428768-8428848 1.27e-02 40_[+3(1.75e-05)]_32 chrIII:3789831-3789911 1.04e-01 80 chrI:10407666-10407746 6.60e-03 62_[+4(2.32e-05)]_10 chrX:5121927-5122007 4.24e-01 80 chrX:11467507-11467587 2.29e-01 22_[+1(8.13e-05)]_50 chrII:10384935-10385015 9.11e-01 80 chrII:11185166-11185246 4.67e-02 56_[+1(6.70e-05)]_16 chrI:8307658-8307738 9.52e-01 80 chrX:11474354-11474434 1.21e-01 80 chrI:10037819-10037899 1.72e-03 6_[+1(1.43e-05)]_66 chrIV:8782283-8782363 1.85e-01 13_[+2(6.08e-05)]_7_[+2(6.08e-05)]_\ 44 chrX:5686251-5686331 1.35e-01 80 chrIII:4947448-4947528 3.12e-03 19_[+4(2.32e-05)]_53 chrX:14312578-14312658 7.45e-04 14_[+5(6.97e-05)]_58 chrIII:7659644-7659724 6.20e-03 63_[+4(2.32e-05)]_9 chrIV:5754169-5754249 1.23e-01 80 chrI:9077407-9077487 1.81e-03 49_[+3(1.75e-05)]_23 chrIV:13980232-13980312 3.48e-01 80 chrX:13584105-13584185 4.18e-02 80 chrX:10395932-10396012 8.09e-03 80 chrX:14961051-14961131 9.99e-01 80 chrI:6780157-6780237 1.81e-05 25_[+3(1.75e-05)]_23_[+2(3.18e-05)]_\ 16 chrI:1540561-1540641 3.48e-02 80 chrX:8163713-8163793 4.35e-02 30_[+4(2.32e-05)]_42 chrI:10769870-10769950 1.02e-04 1_[+1(1.43e-05)]_19_[+3(8.13e-05)]_\ 44 chrII:5181625-5181705 7.03e-01 80 chrX:13584988-13585068 3.80e-03 80 chrIV:5561320-5561400 1.70e-01 80 chrII:11567329-11567409 4.74e-04 33_[+3(1.75e-05)]_39 chrIV:51480-51560 6.54e-04 24_[+2(6.08e-05)]_48 chrI:4035440-4035520 1.20e-01 80 chrI:1271141-1271221 2.02e-02 80 chrX:8201403-8201483 2.29e-01 80 chrX:10576578-10576658 9.98e-01 80 chrIII:433124-433204 1.85e-02 [+2(1.59e-05)]_[+2(1.59e-05)]_64 chrIV:3636791-3636871 4.92e-04 50_[+4(2.32e-05)]_22 chrI:14945676-14945756 2.25e-02 1_[+2(1.59e-05)]_71 chrV:12039991-12040071 6.13e-01 80 chrII:1246983-1247063 1.23e-02 56_[+2(6.08e-05)]_16 chrV:20713085-20713165 4.40e-01 80 chrX:14146897-14146977 1.45e-02 65_[+2(1.59e-05)]_7 chrIV:7488070-7488150 5.80e-01 80 chrX:9337923-9338003 2.18e-01 80 chrIV:10342452-10342532 1.40e-01 80 chrIII:10634181-10634261 5.49e-02 80 chrV:15497833-15497913 5.75e-01 80 chrI:6280484-6280564 2.04e-01 80 chrIV:8627467-8627547 1.42e-01 80 chrIII:5715682-5715762 5.42e-02 80 chrIII:12558232-12558312 9.20e-01 80 chrII:15256012-15256092 1.04e-04 15_[+2(1.59e-05)]_[+2(1.59e-05)]_36_\ [+5(6.97e-05)]_5 chrX:16446037-16446117 1.48e-01 80 chrII:9646256-9646336 4.21e-02 21_[+1(3.96e-05)]_51 chrIII:888019-888099 1.38e-02 80 chrX:11057302-11057382 2.49e-02 41_[+1(1.43e-05)]_31 chrV:13808645-13808725 1.13e-01 80 chrIII:7116820-7116900 8.70e-03 47_[+1(1.43e-05)]_[+5(9.81e-05)]_17 chrIII:3271928-3272008 3.29e-03 20_[+1(1.43e-05)]_[+1(1.43e-05)]_\ [+1(1.43e-05)]_[+1(1.43e-05)]_[+1(1.43e-05)]_20 chrX:14504440-14504520 8.30e-01 80 chrIV:2998663-2998743 2.54e-01 80 chrII:2220046-2220126 2.37e-01 80 chrV:6879707-6879787 1.06e-03 18_[+4(6.50e-05)]_19_[+2(3.18e-05)]_\ 27 chrV:15071439-15071519 6.52e-03 28_[+1(3.96e-05)]_44 chrIV:6576898-6576978 1.66e-02 80 chrX:10597753-10597833 2.81e-03 19_[+1(5.07e-05)]_53 chrX:2432602-2432682 5.30e-02 6_[+3(9.72e-05)]_66 chrIII:6537291-6537371 2.75e-01 80 chrV:10273926-10274006 1.12e-04 16_[+2(4.63e-05)]_56 chrII:7642252-7642332 1.40e-01 80 chrII:14405296-14405376 9.07e-01 80 chrI:7711801-7711881 9.58e-04 12_[+4(4.44e-05)]_23_[+1(2.70e-05)]_\ 29 chrIV:3233592-3233672 8.69e-02 80 chrI:10035056-10035136 2.89e-03 80 chrIII:13717679-13717759 2.27e-02 26_[+3(1.75e-05)]_46 chrI:11095784-11095864 8.89e-04 50_[+5(2.67e-05)]_22 chrIII:10094752-10094832 2.71e-04 4_[+4(2.32e-05)]_2_[+5(1.42e-05)]_\ 58 chrIII:9818960-9819040 1.53e-01 11_[+3(9.72e-05)]_61 chrX:11262469-11262549 6.06e-02 80 chrI:12065424-12065504 3.80e-01 80 chrX:4265752-4265832 8.22e-02 80 chrX:11522286-11522366 7.20e-03 80 chrI:13373042-13373122 9.33e-02 36_[+3(1.75e-05)]_36 chrIV:7320112-7320192 1.28e-06 27_[+1(2.70e-05)]_[+4(2.32e-05)]_37 chrII:6858970-6859050 3.64e-04 25_[+5(1.42e-05)]_26_[+3(1.75e-05)]_\ 13 chrV:9561867-9561947 2.89e-03 25_[+4(8.55e-05)]_47 chrII:6491964-6492044 7.95e-02 80 chrX:10637612-10637692 9.43e-01 80 chrX:13144320-13144400 3.30e-01 80 chrI:3740530-3740610 7.85e-03 [+1(1.43e-05)]_72 chrI:9869259-9869339 6.21e-01 80 chrIV:11027738-11027818 6.53e-01 80 chrI:13951692-13951772 7.16e-01 80 chrI:6459607-6459687 1.68e-01 80 chrX:2885487-2885567 1.50e-03 19_[+5(6.97e-05)]_45_[+1(2.70e-05)] chrIII:9668082-9668162 1.88e-02 47_[+3(1.75e-05)]_25 chrX:7809704-7809784 5.30e-04 12_[+1(1.43e-05)]_60 chrII:12222709-12222789 1.05e-01 80 chrIV:12771583-12771663 2.97e-01 80 chrIII:8874352-8874432 5.78e-01 80 chrX:8477639-8477719 7.08e-01 80 chrII:4506729-4506809 2.51e-05 10_[+1(5.07e-05)]_43_[+3(1.75e-05)]_\ 11 chrIV:1420283-1420363 2.52e-03 24_[+4(2.32e-05)]_48 chrI:1069995-1070075 2.10e-03 [+3(8.13e-05)]_72 chrX:8286910-8286990 2.06e-01 43_[+1(6.70e-05)]_29 chrI:10585373-10585453 4.00e-02 80 chrI:1273942-1274022 6.92e-04 23_[+2(1.59e-05)]_[+2(1.59e-05)]_\ [+2(1.59e-05)]_[+2(1.59e-05)]_25 chrX:16799336-16799416 6.23e-02 16_[+1(9.39e-05)]_56 chrX:4662639-4662719 4.82e-04 66_[+4(4.44e-05)]_6 chrIII:1926584-1926664 5.01e-02 4_[+3(1.75e-05)]_68 chrI:2864107-2864187 6.39e-02 34_[+3(1.75e-05)]_38 chrII:11293535-11293615 3.27e-03 52_[+1(5.07e-05)]_20 chrI:6579906-6579986 6.57e-02 80 chrV:3703991-3704071 4.47e-03 16_[+2(7.62e-05)]_21_[+3(1.75e-05)]_\ 27 chrV:8130360-8130440 1.67e-03 24_[+2(1.59e-05)]_48 chrV:18490611-18490691 1.71e-03 33_[+2(3.18e-05)]_21_[+1(3.96e-05)]_\ 10 chrIV:10346083-10346163 3.11e-05 22_[+1(1.43e-05)]_42_[+2(4.63e-05)] chrIV:2993589-2993669 2.45e-02 40_[+5(6.97e-05)]_16_[+5(6.97e-05)]_\ [+5(6.97e-05)] chrIV:1168693-1168773 4.70e-02 2_[+2(7.62e-05)]_70 chrX:15566798-15566878 7.97e-03 21_[+4(4.44e-05)]_37_[+5(6.97e-05)]_\ 6 chrV:6246765-6246845 2.61e-02 80 chrIII:7570453-7570533 7.44e-04 70_[+1(8.13e-05)]_2 chrV:10715896-10715976 2.45e-03 5_[+1(8.13e-05)]_22_[+4(4.44e-05)]_\ 7_[+4(6.50e-05)]_22 chrX:11798176-11798256 2.03e-01 80 chrII:13575680-13575760 1.21e-02 68_[+2(6.08e-05)]_4 chrI:1062081-1062161 1.02e-02 24_[+1(6.70e-05)]_48 chrX:5984725-5984805 2.18e-01 80 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n07.farnam.hpc.yale.internal ********************************************************************************