******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/worm/fasta/RankLinear2.0_40/pqm-1.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrII:6123173-6123253 1.0000 80 chrII:240212-240292 1.0000 80 chrX:13937571-13937651 1.0000 80 chrIV:17179744-17179824 1.0000 80 chrV:20526241-20526321 1.0000 80 chrIV:11771169-11771249 1.0000 80 chrIV:17179255-17179335 1.0000 80 chrII:2090757-2090837 1.0000 80 chrV:8217276-8217356 1.0000 80 chrIV:4530353-4530433 1.0000 80 chrV:8781304-8781384 1.0000 80 chrIV:1075626-1075706 1.0000 80 chrII:9010135-9010215 1.0000 80 chrIII:2053577-2053657 1.0000 80 chrV:16175395-16175475 1.0000 80 chrV:11403237-11403317 1.0000 80 chrV:13893764-13893844 1.0000 80 chrI:9738561-9738641 1.0000 80 chrI:4517062-4517142 1.0000 80 chrIII:2239913-2239993 1.0000 80 chrX:9863064-9863144 1.0000 80 chrIII:1323705-1323785 1.0000 80 chrI:4161197-4161277 1.0000 80 chrV:2810330-2810410 1.0000 80 chrIV:3310976-3311056 1.0000 80 chrX:2203889-2203969 1.0000 80 chrI:10409046-10409126 1.0000 80 chrV:13577019-13577099 1.0000 80 chrII:65666-65746 1.0000 80 chrII:1386655-1386735 1.0000 80 chrIII:9622255-9622335 1.0000 80 chrIV:11257621-11257701 1.0000 80 chrII:6781335-6781415 1.0000 80 chrIV:10482722-10482802 1.0000 80 chrV:12745159-12745239 1.0000 80 chrIII:2253199-2253279 1.0000 80 chrI:1015086-1015166 1.0000 80 chrII:2923784-2923864 1.0000 80 chrX:7064831-7064911 1.0000 80 chrII:10134418-10134498 1.0000 80 chrV:17714460-17714540 1.0000 80 chrX:4818999-4819079 1.0000 80 chrII:6883889-6883969 1.0000 80 chrV:19697548-19697628 1.0000 80 chrIII:2508066-2508146 1.0000 80 chrIV:6276013-6276093 1.0000 80 chrIII:3370164-3370244 1.0000 80 chrX:4282527-4282607 1.0000 80 chrI:12545087-12545167 1.0000 80 chrV:11403847-11403927 1.0000 80 chrIV:14885772-14885852 1.0000 80 chrX:5831971-5832051 1.0000 80 chrIV:1266309-1266389 1.0000 80 chrIV:9540464-9540544 1.0000 80 chrV:17662370-17662450 1.0000 80 chrII:764595-764675 1.0000 80 chrIV:3944613-3944693 1.0000 80 chrIV:1379144-1379224 1.0000 80 chrIII:6693401-6693481 1.0000 80 chrV:18324727-18324807 1.0000 80 chrIII:3253890-3253970 1.0000 80 chrIV:4486891-4486971 1.0000 80 chrIII:8291818-8291898 1.0000 80 chrV:7075839-7075919 1.0000 80 chrX:10929320-10929400 1.0000 80 chrV:16143338-16143418 1.0000 80 chrII:9094590-9094670 1.0000 80 chrI:10833553-10833633 1.0000 80 chrX:15097935-15098015 1.0000 80 chrIV:12599316-12599396 1.0000 80 chrII:14964996-14965076 1.0000 80 chrX:2836893-2836973 1.0000 80 chrIII:1289304-1289384 1.0000 80 chrIII:5840347-5840427 1.0000 80 chrII:7779084-7779164 1.0000 80 chrX:10340184-10340264 1.0000 80 chrV:15323587-15323667 1.0000 80 chrIV:9159171-9159251 1.0000 80 chrIV:10543550-10543630 1.0000 80 chrV:6524924-6525004 1.0000 80 chrIII:6117015-6117095 1.0000 80 chrV:17694460-17694540 1.0000 80 chrIV:7326939-7327019 1.0000 80 chrX:3193984-3194064 1.0000 80 chrX:13919769-13919849 1.0000 80 chrV:5821898-5821978 1.0000 80 chrV:1390014-1390094 1.0000 80 chrIII:4039904-4039984 1.0000 80 chrII:2323295-2323375 1.0000 80 chrIV:1148929-1149009 1.0000 80 chrV:8018075-8018155 1.0000 80 chrIII:8051116-8051196 1.0000 80 chrII:334168-334248 1.0000 80 chrII:13073234-13073314 1.0000 80 chrIV:6048614-6048694 1.0000 80 chrIII:778498-778578 1.0000 80 chrIV:12890615-12890695 1.0000 80 chrIV:4482717-4482797 1.0000 80 chrX:10479544-10479624 1.0000 80 chrIV:10439063-10439143 1.0000 80 chrV:13138084-13138164 1.0000 80 chrV:6347113-6347193 1.0000 80 chrI:3858242-3858322 1.0000 80 chrX:17694846-17694926 1.0000 80 chrIII:9913881-9913961 1.0000 80 chrIV:11289113-11289193 1.0000 80 chrI:2019484-2019564 1.0000 80 chrII:5748551-5748631 1.0000 80 chrI:7849229-7849309 1.0000 80 chrV:5512704-5512784 1.0000 80 chrI:5031196-5031276 1.0000 80 chrII:1101586-1101666 1.0000 80 chrV:10281590-10281670 1.0000 80 chrIII:13733963-13734043 1.0000 80 chrI:8731621-8731701 1.0000 80 chrX:11556497-11556577 1.0000 80 chrX:3613803-3613883 1.0000 80 chrII:112412-112492 1.0000 80 chrIII:9255946-9256026 1.0000 80 chrIV:3922051-3922131 1.0000 80 chrX:7317076-7317156 1.0000 80 chrV:2324462-2324542 1.0000 80 chrIII:12318935-12319015 1.0000 80 chrX:17601519-17601599 1.0000 80 chrII:9498853-9498933 1.0000 80 chrV:4935258-4935338 1.0000 80 chrX:14208019-14208099 1.0000 80 chrV:11941824-11941904 1.0000 80 chrI:5287376-5287456 1.0000 80 chrIII:6819690-6819770 1.0000 80 chrV:15432648-15432728 1.0000 80 chrIV:14050579-14050659 1.0000 80 chrII:2677748-2677828 1.0000 80 chrV:5560026-5560106 1.0000 80 chrX:3256925-3257005 1.0000 80 chrII:6520242-6520322 1.0000 80 chrI:5408457-5408537 1.0000 80 chrX:17256909-17256989 1.0000 80 chrI:4438001-4438081 1.0000 80 chrX:2841921-2842001 1.0000 80 chrII:13671046-13671126 1.0000 80 chrI:13692870-13692950 1.0000 80 chrX:6098550-6098630 1.0000 80 chrX:2320721-2320801 1.0000 80 chrIII:2266102-2266182 1.0000 80 chrIV:8757938-8758018 1.0000 80 chrV:20147775-20147855 1.0000 80 chrX:2838759-2838839 1.0000 80 chrIV:8380440-8380520 1.0000 80 chrV:16174293-16174373 1.0000 80 chrI:3710779-3710859 1.0000 80 chrI:6283256-6283336 1.0000 80 chrIII:4506329-4506409 1.0000 80 chrIII:4668343-4668423 1.0000 80 chrI:4593590-4593670 1.0000 80 chrIII:11949375-11949455 1.0000 80 chrI:7354324-7354404 1.0000 80 chrIV:3988774-3988854 1.0000 80 chrI:8218473-8218553 1.0000 80 chrV:8386298-8386378 1.0000 80 chrX:4480933-4481013 1.0000 80 chrIII:3475620-3475700 1.0000 80 chrV:11975411-11975491 1.0000 80 chrIII:10134624-10134704 1.0000 80 chrII:8625263-8625343 1.0000 80 chrII:1949301-1949381 1.0000 80 chrX:7578510-7578590 1.0000 80 chrI:4158237-4158317 1.0000 80 chrIII:8400606-8400686 1.0000 80 chrIV:17171938-17172018 1.0000 80 chrII:5323979-5324059 1.0000 80 chrII:14959422-14959502 1.0000 80 chrIV:17342323-17342403 1.0000 80 chrV:4630487-4630567 1.0000 80 chrX:3031672-3031752 1.0000 80 chrV:11647967-11648047 1.0000 80 chrII:915392-915472 1.0000 80 chrII:4770018-4770098 1.0000 80 chrV:13212706-13212786 1.0000 80 chrII:1995888-1995968 1.0000 80 chrX:3235545-3235625 1.0000 80 chrV:6489102-6489182 1.0000 80 chrII:8384517-8384597 1.0000 80 chrIII:13059488-13059568 1.0000 80 chrI:1815689-1815769 1.0000 80 chrIII:1698994-1699074 1.0000 80 chrIII:2050001-2050081 1.0000 80 chrII:1728409-1728489 1.0000 80 chrV:13268207-13268287 1.0000 80 chrX:7576111-7576191 1.0000 80 chrII:5585988-5586068 1.0000 80 chrI:6081570-6081650 1.0000 80 chrIII:1602805-1602885 1.0000 80 chrV:18462499-18462579 1.0000 80 chrIII:12317730-12317810 1.0000 80 chrX:17140797-17140877 1.0000 80 chrII:13468163-13468243 1.0000 80 chrI:5376425-5376505 1.0000 80 chrX:17471829-17471909 1.0000 80 chrV:15298807-15298887 1.0000 80 chrII:943915-943995 1.0000 80 chrV:332770-332850 1.0000 80 chrV:5820037-5820117 1.0000 80 chrV:19051512-19051592 1.0000 80 chrIII:2586359-2586439 1.0000 80 chrX:15276431-15276511 1.0000 80 chrV:5027832-5027912 1.0000 80 chrV:13730937-13731017 1.0000 80 chrIII:8748785-8748865 1.0000 80 chrII:5553676-5553756 1.0000 80 chrI:1836268-1836348 1.0000 80 chrIV:13327198-13327278 1.0000 80 chrX:3576416-3576496 1.0000 80 chrI:986794-986874 1.0000 80 chrII:4552265-4552345 1.0000 80 chrV:8019932-8020012 1.0000 80 chrII:7273727-7273807 1.0000 80 chrII:3786673-3786753 1.0000 80 chrV:8795636-8795716 1.0000 80 chrV:9924656-9924736 1.0000 80 chrIII:154342-154422 1.0000 80 chrII:9157273-9157353 1.0000 80 chrII:6283331-6283411 1.0000 80 chrIII:9474707-9474787 1.0000 80 chrV:11080761-11080841 1.0000 80 chrIII:5981338-5981418 1.0000 80 chrI:6418817-6418897 1.0000 80 chrI:10104949-10105029 1.0000 80 chrV:18246254-18246334 1.0000 80 chrI:14051891-14051971 1.0000 80 chrII:5751513-5751593 1.0000 80 chrV:5067488-5067568 1.0000 80 chrIV:8450691-8450771 1.0000 80 chrIII:1392918-1392998 1.0000 80 chrII:5912307-5912387 1.0000 80 chrII:10594981-10595061 1.0000 80 chrV:8768639-8768719 1.0000 80 chrV:10399419-10399499 1.0000 80 chrIII:8479452-8479532 1.0000 80 chrIV:15689244-15689324 1.0000 80 chrV:11648558-11648638 1.0000 80 chrX:8492796-8492876 1.0000 80 chrV:9373630-9373710 1.0000 80 chrII:4674363-4674443 1.0000 80 chrIV:3900012-3900092 1.0000 80 chrIV:8032315-8032395 1.0000 80 chrIV:15393358-15393438 1.0000 80 chrIV:3158323-3158403 1.0000 80 chrIII:3887799-3887879 1.0000 80 chrV:13716686-13716766 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/worm/inference_raw/MEME/RankLinear2.0_40_pqm-1/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/worm/fasta/RankLinear2.0_40/pqm-1.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.31 C 0.186 G 0.19 T 0.314 Background letter frequencies (from file dataset with add-one prior applied): A 0.31 C 0.186 G 0.19 T 0.314 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF CTKATMAG MEME-1 width = 8 sites = 192 llr = 1319 E-value = 2.1e-131 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTKATMAG MEME-1 Description -------------------------------------------------------------------------------- Simplified A 1::a:4a1 pos.-specific C 5::::6:2 probability G 2:4::::6 matrix T 2a6:a::1 bits 2.4 2.2 1.9 1.7 * ** Relative 1.5 * ** * Entropy 1.2 * **** (9.9 bits) 1.0 ****** 0.7 ******* 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CTTATCAG consensus G G A C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTKATMAG MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIV:3900012-3900092 8 3.14e-05 AACACTC CTTATCAG AATTGCTTCT chrIV:15689244-15689324 45 3.14e-05 ATCAGTCGAC CTTATCAG TTCACCAAGT chrI:14051891-14051971 38 3.14e-05 GTGGCGACTT CTTATCAG TAGCTATCAG chrII:7273727-7273807 54 3.14e-05 TGTGCTTATC CTTATCAG TTGGTTTGTC chrI:1836268-1836348 21 3.14e-05 CCATAATTTC CTTATCAG TCCTCCAGTT chrII:943915-943995 57 3.14e-05 AGATGTCATC CTTATCAG CAACCTATTG chrV:15298807-15298887 55 3.14e-05 TAGGAGGGAG CTTATCAG GCTTATCAAA chrX:17471829-17471909 27 3.14e-05 AAATGTTCTT CTTATCAG CTGACATCAC chrII:1728409-1728489 67 3.14e-05 GATTAGTTTT CTTATCAG GTTGTG chrV:13212706-13212786 2 3.14e-05 T CTTATCAG CTGGTCCACG chrII:4770018-4770098 59 3.14e-05 ATTGACAGCT CTTATCAG GGAGGGTGTG chrII:5323979-5324059 26 3.14e-05 CATAGTGTCT CTTATCAG CTGCGTGTTT chrX:4480933-4481013 28 3.14e-05 TTTTTTCAGC CTTATCAG TGCACTGATA chrI:3710779-3710859 37 3.14e-05 GATAGGGTTT CTTATCAG TTTCAACTAA chrV:16174293-16174373 33 3.14e-05 GTAAGCAATT CTTATCAG CAGTGGTGAT chrI:13692870-13692950 12 3.14e-05 GGGGTGCCTT CTTATCAG CTATTTAATC chrIII:12318935-12319015 71 3.14e-05 TTCTCTGGCC CTTATCAG TG chrIII:9255946-9256026 62 3.14e-05 AGGTTGCTTT CTTATCAG TTCTCACTGT chrX:3613803-3613883 48 3.14e-05 TACATTGCTC CTTATCAG TTTTATCGCT chrI:3858242-3858322 25 3.14e-05 ATTTTGATTC CTTATCAG TTCACACACA chrV:8018075-8018155 51 3.14e-05 TGCATGGCAC CTTATCAG TATGTGTTAA chrIV:7326939-7327019 22 3.14e-05 TTAACAACAT CTTATCAG TTTTTGGTGC chrX:2836893-2836973 42 3.14e-05 TCACTCCCGT CTTATCAG TGAGCCTGGA chrII:14964996-14965076 27 3.14e-05 GATTTTAGTA CTTATCAG CCCATTTATT chrX:15097935-15098015 3 3.14e-05 TT CTTATCAG TCTTGTCATC chrIII:3253890-3253970 72 3.14e-05 TAAGCCATTC CTTATCAG T chrIV:11771169-11771249 36 3.14e-05 CGTATATGAT CTTATCAG TGATGGAAAA chrIV:15393358-15393438 6 6.32e-05 CACTG CTGATAAG GTAATGACGT chrIV:8032315-8032395 13 6.32e-05 GAGACGTAAA CTGATAAG AACGACAACT chrIII:1698994-1699074 59 6.32e-05 CTAAAGTTCA CTGATAAG AAAATGTCAA chrII:1995888-1995968 59 6.32e-05 AGTGACACAA CTGATAAG AATTTTTATT chrV:11647967-11648047 46 6.32e-05 CAAAAATTGA CTGATAAG TAACGACGAA chrI:7354324-7354404 56 6.32e-05 AAGAATTCGT CTGATAAG CCACGTAAAC chrII:13671046-13671126 72 6.32e-05 GCTCCGCACG CTGATAAG C chrI:4438001-4438081 6 6.32e-05 TAACA CTGATAAG AGGTGATTAA chrV:4935258-4935338 27 6.32e-05 TCAAGCATTA CTGATAAG CAGCAAATAA chrIV:10439063-10439143 48 6.32e-05 ACAATTGCCA CTGATAAG CCTCATTCAA chrV:17694460-17694540 4 6.32e-05 ACA CTGATAAG CAATCATTCG chrV:15323587-15323667 49 6.32e-05 TTCCTTGTAA CTGATAAG GATTTTACGT chrI:10833553-10833633 46 6.32e-05 GTGTTGTGTA CTGATAAG GAAGGCAGAT chrV:7075839-7075919 46 6.32e-05 TATAGTGTGA CTGATAAG CGAGCACGAC chrIV:3310976-3311056 73 6.32e-05 TTTTGGTATA CTGATAAG chrIII:1323705-1323785 32 6.32e-05 AAATGCCAAA CTGATAAG ATGTTTGACT chrIII:2239913-2239993 31 6.32e-05 TGTATAGGAA CTGATAAG AAATTGTTGG chrIII:2053577-2053657 59 6.32e-05 ACTGATAACG CTGATAAG AAAATGGAAG chrV:8217276-8217356 67 6.32e-05 GAGCTGGAGA CTGATAAG ATGATA chrIV:17179744-17179824 23 6.32e-05 AAAAGTGACT CTGATAAG GAGCGAGGAG chrX:13937571-13937651 73 6.32e-05 CTACGATTCG CTGATAAG chrII:4674363-4674443 26 1.27e-04 CCGAACTTAT GTTATCAG TTCTTCCGTA chrIII:8479452-8479532 44 1.27e-04 TCAGGAGATT GTTATCAG TTTATCAGTG chrII:5912307-5912387 70 1.27e-04 GAAAAATGTT GTTATCAG GTA chrV:8019932-8020012 33 1.27e-04 TATTTAATAT GTTATCAG TCACCTCATC chrX:17140797-17140877 33 1.27e-04 ACACCACGTT GTTATCAG TACATATGAA chrIII:1602805-1602885 13 1.27e-04 AAAAAGTGAT GTTATCAG TAAGTATGAT chrII:915392-915472 73 1.27e-04 AATTGATCGT GTTATCAG chrII:14959422-14959502 51 1.27e-04 GCTGTCAATG GTTATCAG TGGTATTGTA chrIII:3475620-3475700 56 1.27e-04 CGCCGGATGT GTTATCAG TTAAGCAAGT chrIII:2266102-2266182 40 1.27e-04 GTAGCAAGGC GTTATCAG TTCTGCTCTT chrX:2320721-2320801 3 1.27e-04 TT GTTATCAG GGAGAACTAC chrII:6520242-6520322 22 1.27e-04 CCATGTTCTG GTTATCAG CAAAAAGGAA chrV:2324462-2324542 51 1.27e-04 CAAAGAATTC GTTATCAG TGTTTATAAC chrV:1390014-1390094 60 1.27e-04 TTGGGGTATC GTTATCAG AGAATTAGCA chrIV:9159171-9159251 44 1.27e-04 GATTCAGGCA GTTATCAG AACACTATCA chrII:9094590-9094670 18 1.27e-04 TGCACATTTT GTTATCAG TTCGTTGAAA chrX:10929320-10929400 5 1.27e-04 AACG GTTATCAG AGGAAAGAGA chrIII:8291818-8291898 51 1.27e-04 ACACCGACAG GTTATCAG CAATTTTTAT chrIV:4486891-4486971 35 1.27e-04 ATTGTGAGCT GTTATCAG TGTCGGAAAC chrIV:1379144-1379224 49 1.27e-04 GAGGGCGAAG GTTATCAG TTTCAGTGTA chrX:4282527-4282607 47 1.27e-04 TTGCGTTTCT GTTATCAG TTAGTGTAAA chrIII:2508066-2508146 53 1.27e-04 GAGAGACGAC GTTATCAG TTAACGGAGC chrII:10134418-10134498 33 1.27e-04 AACAAATATT GTTATCAG TGGGTTCAAG chrV:13893764-13893844 59 1.27e-04 CACATAAAAT GTTATCAG TCACAGTCTG chrIV:17179255-17179335 32 1.27e-04 CAACACCACG GTTATCAG TTGAAGTTTC chrV:8768639-8768719 2 1.47e-04 T CTTATCAC TAGTCAAGAT chrII:3786673-3786753 11 1.47e-04 ATTCATTACC CTTATCAC ACACATACGC chrII:5553676-5553756 12 1.47e-04 CTTTCAATTT CTTATCAC ATCTGGAAAA chrII:13468163-13468243 67 1.47e-04 CGGGAGAGCA CTTATCAC CATTTT chrIII:10134624-10134704 48 1.47e-04 GTCCTTCTCT CTTATCAC TTTGCTCAGC chrIV:3988774-3988854 34 1.47e-04 CTCACAGTCC CTTATCAC AAAACTCAAA chrIV:9540464-9540544 49 1.47e-04 TTGCGTAACA CTTATCAC TAAACGGCTT chrII:2923784-2923864 64 1.47e-04 TTTCCCAACC CTTATCAC CGATTTTTT chrIII:9622255-9622335 16 1.47e-04 CCAAGTGTTG CTTATCAC AAAGATTTTC chrII:65666-65746 51 1.47e-04 GTAATATGCT CTTATCAC TTGTATTGAA chrV:20526241-20526321 17 1.47e-04 TCACAATTTC CTTATCAC CGATAAGGCT chrII:9157273-9157353 58 1.87e-04 AATAATGTTG GTGATAAG GAAATGGCAA chrV:5820037-5820117 65 1.87e-04 CTTGAAAATG GTGATAAG GATGATTC chrIII:2050001-2050081 52 1.87e-04 AGACCACTTG GTGATAAG CTATCAATAG chrIII:13059488-13059568 54 1.87e-04 GAACCGTCAA GTGATAAG AAACAGCAAA chrIII:4668343-4668423 61 1.87e-04 AGTATTCCAT GTGATAAG AAAGAGCAAA chrIII:13733963-13734043 26 1.87e-04 GGTGATAACT GTGATAAG GAAGTAGAGA chrIII:1289304-1289384 53 1.87e-04 GGGGATGTGA GTGATAAG AACTAATTAA chrV:17714460-17714540 68 1.87e-04 GATAAGTGGT GTGATAAG TGGTG chrII:240212-240292 63 1.87e-04 TCAAAAAGTG GTGATAAG AATCGAGAAT chrIV:3158323-3158403 26 2.18e-04 GATTGAGCAG CTGATAAC AGAGAAATGT chrIII:154342-154422 33 2.18e-04 ACTCTATCAG CTGATAAC CCGTTCTTCC chrV:5027832-5027912 71 2.18e-04 AATGATATAA CTGATAAC AC chrI:5376425-5376505 43 2.18e-04 TGTTTGTCAA CTGATAAC CTCCTTTTTT chrX:3031672-3031752 67 2.18e-04 TTATGGTGCA CTGATAAC AGTTGT chrII:9498853-9498933 19 2.18e-04 CAAATTTATG CTGATAAC TTTCTTATCA chrIII:9913881-9913961 60 2.18e-04 ATGCTATTTA CTGATAAC ATCCACTCTT chrIV:10543550-10543630 26 2.18e-04 GCGGGAAATG CTGATAAC CTCCTTATCA chrII:764595-764675 28 2.18e-04 TAATCACTCA CTGATAAC GAGCATAATA chrII:6883889-6883969 12 2.18e-04 GAAGTGAGAA CTGATAAC CACTACCGCC chrI:1015086-1015166 23 2.18e-04 ATCACCACTA CTGATAAC GAGGAAATCA chrIII:2253199-2253279 36 2.18e-04 GAAGAGGTAA CTGATAAC AAAACACAAT chrX:7576111-7576191 5 3.03e-04 TATC TTTATCAG TTGGCCTCAA chrI:8218473-8218553 25 3.03e-04 CATTCAACAT TTTATCAG TGAATAGACC chrI:6283256-6283336 25 3.03e-04 TTGCACCGCT TTTATCAG TTATTACCGT chrII:2677748-2677828 33 3.03e-04 ACACACGTCA CTGATCAA ACTATCAGTG chrII:1101586-1101666 56 3.03e-04 TTTCGCAGTT TTTATCAG TGAATTTGAA chrII:5748551-5748631 63 3.03e-04 AGTACGCTGT TTTATCAG TTCCAACCAA chrIV:1266309-1266389 47 3.03e-04 CGGTTTGAAC TTTATCAG TGTAAACGAA chrI:986794-986874 51 3.55e-04 TAATCATTGC GTTATCAC ATAGTTGACA chrV:13268207-13268287 65 3.55e-04 TTACTCATTT GTTATCAC TATTCTTT chrX:7578510-7578590 58 3.87e-04 AGGCGTTGCG CTTATCAA TTTTTTTTAC chrII:8625263-8625343 22 3.87e-04 TGAGTGAGCT CTTATCAA AAAGGACACT chrV:11941824-11941904 52 3.87e-04 AGCAGCTCCT CTTATCAA TTTTGAATTT chrIV:6048614-6048694 64 3.87e-04 ATTTGGTGGT CTTATCAA GAATGCTGA chrII:334168-334248 68 3.87e-04 TACTCTAACT CTTATCAA TTACC chrIII:8051116-8051196 6 3.87e-04 TTTTC CTTATCAA ATAATTTATC chrII:2323295-2323375 47 3.87e-04 AGGCTTAATT CTTATCAA CGAGTTTGCG chrI:12545087-12545167 5 3.87e-04 TTCC CTTATCAA GAAATTTCCC chrI:10409046-10409126 67 3.87e-04 CGAGTTCTTC CTTATCAA GGTCTT chrI:4161197-4161277 13 3.87e-04 ATACAGTTTC CTTATCAA TTTCTGTTTA chrIV:13327198-13327278 13 4.39e-04 CAATAAACCG ATTATCAG TCCTTCCACT chrIII:8400606-8400686 50 4.39e-04 GTATTTCTAC ATTATCAG CACACAATTC chrX:3256925-3257005 10 4.39e-04 ACCAAATGT ATTATCAG TTTTCTCCGA chrIV:1148929-1149009 13 4.39e-04 TCAATAAATC ATTATCAG TTGTCGTCGA chrIII:3887799-3887879 65 4.92e-04 TGTCGATTGT TTGATAAG ATGAGCGG chrV:9373630-9373710 10 4.92e-04 CAAGACTTT TTGATAAG TTATCAATAA chrV:10399419-10399499 21 4.92e-04 TGATAGTGAG TTGATAAG AAAAGTACAA chrV:11080761-11080841 17 4.92e-04 ATACAGCATT TTGATAAG CGAACAGATA chrV:4630487-4630567 52 4.92e-04 CATAAAGTGT TTGATAAG CCGTGAAAGG chrII:1949301-1949381 65 4.92e-04 GACAAGATTC TTGATAAG AAATACTT chrX:2838759-2838839 29 4.92e-04 CAAAAGAAAA TTGATAAG ACATGATAAC chrI:5408457-5408537 35 4.92e-04 GACGGAGGGA TTGATAAG AAAATGGGAG chrV:10281590-10281670 33 4.92e-04 TGAATGATAA TTGATAAG AAGGCAAGAA chrV:11403847-11403927 68 4.92e-04 GCCCGTTGCT TTGATAAG CAAAC chrV:13577019-13577099 26 4.92e-04 CAGACAACAA TTGATAAG GTTCAATTGG chrII:2090757-2090837 59 4.92e-04 CAATGCACAC TTGATAAG GACAAAAACT chrIII:4039904-4039984 42 5.31e-04 GAAAATGGCA GTGATAAC AAGCCATGGA chrIV:12599316-12599396 14 5.31e-04 TGTTATCAAA TTGATCAC AGAATTAGAA chrV:8781304-8781384 57 5.31e-04 GAGAGTGGCT GTGATAAC AGAGACAACA chrIV:8450691-8450771 44 6.70e-04 ACTATATCAC CTTATCAT CATTACGTCG chrIII:8748785-8748865 13 6.70e-04 GGTATGATGT CTGATAAA AAGGGTGTAT chrV:18462499-18462579 17 6.70e-04 CACTAATTTT CTTATCAT TAGTGATAAT chrV:8386298-8386378 55 6.70e-04 GGCACACTTG CTGATAAA CTAATGCAGT chrIV:3922051-3922131 68 6.70e-04 CATGATGTCA CTGATAAA CAAAC chrIV:4482717-4482797 45 6.70e-04 GCACACAAAA CTGATAAA CCCCCGACGA chrIII:6693401-6693481 35 6.70e-04 ACTGTTATCA TTTATAAG TGTATGAGCA chrIV:3944613-3944693 19 6.70e-04 CTTGTGCTTC CTTATCAT TTTTCGTTTT chrV:2810330-2810410 43 6.70e-04 TTAAATTTTT CTTATCAT CGATGATAAT chrV:11403237-11403317 36 6.70e-04 ATATCAGACA CTGATAAA ATAGTTTAGA chrV:9924656-9924736 40 7.35e-04 CGATTATCGC TTTATCAC AGAACTACGT chrX:10479544-10479624 17 7.35e-04 GAAATACCAA TTTATCAC TAGTTTGATT chrIV:11257621-11257701 47 7.35e-04 TCGATCAAAT TTTATCAC ATCAAACCCC chrV:332770-332850 66 8.21e-04 CAATTTTCCT GTTATCAA ACTGTGG chrII:112412-112492 5 8.21e-04 TTCA GTTATCAA TCGAAGATTA chrIV:11289113-11289193 29 8.21e-04 CCATCAAAAT GTTATCAA TTTATCACTT chrX:17694846-17694926 1 8.21e-04 . GTTATCAA AGTAGAAAAG chrX:6098550-6098630 73 8.61e-04 CAACGGTGCA ATGATAAG chrX:11556497-11556577 1 8.61e-04 . CTGATCGG TCATCTTTTT chrI:5031196-5031276 70 8.61e-04 GAAAGTCTTG ATGATAAG GCA chrI:7849229-7849309 6 8.61e-04 TAGAA ATGATAAG ATAGCAAACA chrX:9863064-9863144 65 8.61e-04 ATATTGTAAG ATGATAAG ATCTAAAA chrI:9738561-9738641 12 8.61e-04 GAAGGAAACG ATGATAAG AGACGGTTTG chrV:13716686-13716766 34 1.03e-03 GCGGAGCACA CTGATAAT AATTGTATTT chrIII:5981338-5981418 71 1.03e-03 ATGGACACAA CTGATAAT CA chrIV:17171938-17172018 65 1.03e-03 GGAAGGAATA CTGATAAT GATAATGA chrI:4517062-4517142 53 1.03e-03 TTCAAAACTA CTGATAAT AATTGCGCAC chrII:9010135-9010215 61 1.03e-03 GGGTGATAAT ATTATCAC CAAGAGCAGG chrIV:4530353-4530433 20 1.03e-03 CCTTGATAAA CTGATAAT ATGAACCATA chrV:8795636-8795716 53 1.06e-03 ATCACTAGAG TTGATAAC ATGCGTAGGA chrIII:6819690-6819770 19 1.06e-03 TGAAAAGAGA TTGATAAC CACGTGAAGT chrIV:6276013-6276093 38 1.06e-03 ACTGACTTAA TTGATAAC GAAACTGATG chrV:13730937-13731017 8 1.22e-03 CAAAACG GTTATCAT CAAATAACGT chrV:16175395-16175475 53 1.22e-03 TTCATAGGAA GTGATAAA AATGAATGGT chrIV:1075626-1075706 72 1.22e-03 TGAGTAATTT GTTATCAT T chrI:6418817-6418897 46 1.38e-03 TATGTATTTT TTTATCAA TTTCCGAATA chrV:5067488-5067568 59 1.44e-03 CTATTGGCAA ATGATAAC AACCACAAAC chrII:5585988-5586068 63 1.44e-03 ACTATAAATC ATGATAAC CACTCCAGTT chrII:7779084-7779164 48 1.44e-03 ACAGCACAAG ATGATAAC TGTATGAAAT chrV:17662370-17662450 60 1.44e-03 TATGATGGAA ATGATAAC GAGTATCGCA chrII:8384517-8384597 50 1.50e-03 TTTTGTCATC ATGATCAA ACTATCGGAG chrII:13073234-13073314 56 1.50e-03 CAGCCACGGG GTTATCGG CGACGGTTCA chrX:3576416-3576496 65 1.63e-03 CTCTTAATTT CTTATCGC TTCGTTAC chrV:19697548-19697628 4 1.63e-03 ATT CTTATCGC ATTTTCTTCG chrII:6123173-6123253 26 1.63e-03 TCCCAGTACT CTTATCGC TGCGTCTCGC chrV:5560026-5560106 16 1.69e-03 GTCTTTTGTG ATTATCAA CAGGCGGGGA chrX:13919769-13919849 23 1.85e-03 GCTGTTTTGT TTTATCAT TTTTGCATGC chrX:5831971-5832051 31 2.18e-03 GATTATGATG ATGATAAA AAGGGTTTTT chrII:6781335-6781415 64 2.26e-03 TATTCTTTTC TTGATAAT CTGCAAGCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTKATMAG MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:3900012-3900092 3.1e-05 7_[+1]_65 chrIV:15689244-15689324 3.1e-05 44_[+1]_28 chrI:14051891-14051971 3.1e-05 37_[+1]_35 chrII:7273727-7273807 3.1e-05 53_[+1]_19 chrI:1836268-1836348 3.1e-05 20_[+1]_52 chrII:943915-943995 3.1e-05 56_[+1]_16 chrV:15298807-15298887 3.1e-05 54_[+1]_18 chrX:17471829-17471909 3.1e-05 26_[+1]_46 chrII:1728409-1728489 3.1e-05 66_[+1]_6 chrV:13212706-13212786 3.1e-05 1_[+1]_71 chrII:4770018-4770098 3.1e-05 58_[+1]_14 chrII:5323979-5324059 3.1e-05 25_[+1]_47 chrX:4480933-4481013 3.1e-05 27_[+1]_45 chrI:3710779-3710859 3.1e-05 36_[+1]_36 chrV:16174293-16174373 3.1e-05 32_[+1]_40 chrI:13692870-13692950 3.1e-05 11_[+1]_61 chrIII:12318935-12319015 3.1e-05 70_[+1]_2 chrIII:9255946-9256026 3.1e-05 61_[+1]_11 chrX:3613803-3613883 3.1e-05 47_[+1]_25 chrI:3858242-3858322 3.1e-05 24_[+1]_48 chrV:8018075-8018155 3.1e-05 50_[+1]_22 chrIV:7326939-7327019 3.1e-05 21_[+1]_51 chrX:2836893-2836973 3.1e-05 41_[+1]_31 chrII:14964996-14965076 3.1e-05 26_[+1]_46 chrX:15097935-15098015 3.1e-05 2_[+1]_70 chrIII:3253890-3253970 3.1e-05 71_[+1]_1 chrIV:11771169-11771249 3.1e-05 35_[+1]_37 chrIV:15393358-15393438 6.3e-05 5_[+1]_67 chrIV:8032315-8032395 6.3e-05 12_[+1]_60 chrIII:1698994-1699074 6.3e-05 58_[+1]_14 chrII:1995888-1995968 6.3e-05 58_[+1]_14 chrV:11647967-11648047 6.3e-05 45_[+1]_27 chrI:7354324-7354404 6.3e-05 55_[+1]_17 chrII:13671046-13671126 6.3e-05 71_[+1]_1 chrI:4438001-4438081 6.3e-05 5_[+1]_67 chrV:4935258-4935338 6.3e-05 26_[+1]_46 chrIV:10439063-10439143 6.3e-05 47_[+1]_25 chrV:17694460-17694540 6.3e-05 3_[+1]_69 chrV:15323587-15323667 6.3e-05 48_[+1]_24 chrI:10833553-10833633 6.3e-05 45_[+1]_27 chrV:7075839-7075919 6.3e-05 45_[+1]_27 chrIV:3310976-3311056 6.3e-05 72_[+1] chrIII:1323705-1323785 6.3e-05 31_[+1]_41 chrIII:2239913-2239993 6.3e-05 30_[+1]_42 chrIII:2053577-2053657 6.3e-05 58_[+1]_14 chrV:8217276-8217356 6.3e-05 66_[+1]_6 chrIV:17179744-17179824 6.3e-05 22_[+1]_50 chrX:13937571-13937651 6.3e-05 72_[+1] chrII:4674363-4674443 0.00013 25_[+1]_47 chrIII:8479452-8479532 0.00013 43_[+1]_29 chrII:5912307-5912387 0.00013 69_[+1]_3 chrV:8019932-8020012 0.00013 32_[+1]_40 chrX:17140797-17140877 0.00013 32_[+1]_40 chrIII:1602805-1602885 0.00013 12_[+1]_60 chrII:915392-915472 0.00013 72_[+1] chrII:14959422-14959502 0.00013 50_[+1]_22 chrIII:3475620-3475700 0.00013 55_[+1]_17 chrIII:2266102-2266182 0.00013 39_[+1]_33 chrX:2320721-2320801 0.00013 2_[+1]_70 chrII:6520242-6520322 0.00013 21_[+1]_51 chrV:2324462-2324542 0.00013 50_[+1]_22 chrV:1390014-1390094 0.00013 59_[+1]_13 chrIV:9159171-9159251 0.00013 43_[+1]_29 chrII:9094590-9094670 0.00013 17_[+1]_55 chrX:10929320-10929400 0.00013 4_[+1]_68 chrIII:8291818-8291898 0.00013 50_[+1]_22 chrIV:4486891-4486971 0.00013 34_[+1]_38 chrIV:1379144-1379224 0.00013 48_[+1]_24 chrX:4282527-4282607 0.00013 46_[+1]_26 chrIII:2508066-2508146 0.00013 52_[+1]_20 chrII:10134418-10134498 0.00013 32_[+1]_40 chrV:13893764-13893844 0.00013 58_[+1]_14 chrIV:17179255-17179335 0.00013 31_[+1]_41 chrV:8768639-8768719 0.00015 1_[+1]_71 chrII:3786673-3786753 0.00015 10_[+1]_62 chrII:5553676-5553756 0.00015 11_[+1]_61 chrII:13468163-13468243 0.00015 66_[+1]_6 chrIII:10134624-10134704 0.00015 47_[+1]_25 chrIV:3988774-3988854 0.00015 33_[+1]_39 chrIV:9540464-9540544 0.00015 48_[+1]_24 chrII:2923784-2923864 0.00015 63_[+1]_9 chrIII:9622255-9622335 0.00015 15_[+1]_57 chrII:65666-65746 0.00015 50_[+1]_22 chrV:20526241-20526321 0.00015 16_[+1]_56 chrII:9157273-9157353 0.00019 57_[+1]_15 chrV:5820037-5820117 0.00019 64_[+1]_8 chrIII:2050001-2050081 0.00019 51_[+1]_21 chrIII:13059488-13059568 0.00019 53_[+1]_19 chrIII:4668343-4668423 0.00019 60_[+1]_12 chrIII:13733963-13734043 0.00019 25_[+1]_47 chrIII:1289304-1289384 0.00019 52_[+1]_20 chrV:17714460-17714540 0.00019 67_[+1]_5 chrII:240212-240292 0.00019 62_[+1]_10 chrIV:3158323-3158403 0.00022 25_[+1]_47 chrIII:154342-154422 0.00022 32_[+1]_40 chrV:5027832-5027912 0.00022 70_[+1]_2 chrI:5376425-5376505 0.00022 42_[+1]_30 chrX:3031672-3031752 0.00022 66_[+1]_6 chrII:9498853-9498933 0.00022 18_[+1]_54 chrIII:9913881-9913961 0.00022 59_[+1]_13 chrIV:10543550-10543630 0.00022 25_[+1]_47 chrII:764595-764675 0.00022 27_[+1]_45 chrII:6883889-6883969 0.00022 11_[+1]_61 chrI:1015086-1015166 0.00022 22_[+1]_50 chrIII:2253199-2253279 0.00022 35_[+1]_37 chrX:7576111-7576191 0.0003 4_[+1]_68 chrI:8218473-8218553 0.0003 24_[+1]_48 chrI:6283256-6283336 0.0003 24_[+1]_48 chrII:2677748-2677828 0.0003 32_[+1]_40 chrII:1101586-1101666 0.0003 55_[+1]_17 chrII:5748551-5748631 0.0003 62_[+1]_10 chrIV:1266309-1266389 0.0003 46_[+1]_26 chrI:986794-986874 0.00035 50_[+1]_22 chrV:13268207-13268287 0.00035 64_[+1]_8 chrX:7578510-7578590 0.00039 57_[+1]_15 chrII:8625263-8625343 0.00039 21_[+1]_51 chrV:11941824-11941904 0.00039 51_[+1]_21 chrIV:6048614-6048694 0.00039 63_[+1]_9 chrII:334168-334248 0.00039 67_[+1]_5 chrIII:8051116-8051196 0.00039 5_[+1]_67 chrII:2323295-2323375 0.00039 46_[+1]_26 chrI:12545087-12545167 0.00039 4_[+1]_68 chrI:10409046-10409126 0.00039 66_[+1]_6 chrI:4161197-4161277 0.00039 12_[+1]_60 chrIV:13327198-13327278 0.00044 12_[+1]_60 chrIII:8400606-8400686 0.00044 49_[+1]_23 chrX:3256925-3257005 0.00044 9_[+1]_63 chrIV:1148929-1149009 0.00044 12_[+1]_60 chrIII:3887799-3887879 0.00049 64_[+1]_8 chrV:9373630-9373710 0.00049 9_[+1]_63 chrV:10399419-10399499 0.00049 20_[+1]_52 chrV:11080761-11080841 0.00049 16_[+1]_56 chrV:4630487-4630567 0.00049 51_[+1]_21 chrII:1949301-1949381 0.00049 64_[+1]_8 chrX:2838759-2838839 0.00049 28_[+1]_44 chrI:5408457-5408537 0.00049 34_[+1]_38 chrV:10281590-10281670 0.00049 32_[+1]_40 chrV:11403847-11403927 0.00049 67_[+1]_5 chrV:13577019-13577099 0.00049 25_[+1]_47 chrII:2090757-2090837 0.00049 58_[+1]_14 chrIII:4039904-4039984 0.00053 41_[+1]_31 chrIV:12599316-12599396 0.00053 13_[+1]_59 chrV:8781304-8781384 0.00053 56_[+1]_16 chrIV:8450691-8450771 0.00067 43_[+1]_29 chrIII:8748785-8748865 0.00067 12_[+1]_60 chrV:18462499-18462579 0.00067 16_[+1]_56 chrV:8386298-8386378 0.00067 54_[+1]_18 chrIV:3922051-3922131 0.00067 67_[+1]_5 chrIV:4482717-4482797 0.00067 44_[+1]_28 chrIII:6693401-6693481 0.00067 34_[+1]_38 chrIV:3944613-3944693 0.00067 18_[+1]_54 chrV:2810330-2810410 0.00067 42_[+1]_30 chrV:11403237-11403317 0.00067 35_[+1]_37 chrV:9924656-9924736 0.00074 39_[+1]_33 chrX:10479544-10479624 0.00074 16_[+1]_56 chrIV:11257621-11257701 0.00074 46_[+1]_26 chrV:332770-332850 0.00082 65_[+1]_7 chrII:112412-112492 0.00082 4_[+1]_68 chrIV:11289113-11289193 0.00082 28_[+1]_44 chrX:17694846-17694926 0.00082 [+1]_72 chrX:6098550-6098630 0.00086 72_[+1] chrX:11556497-11556577 0.00086 [+1]_72 chrI:5031196-5031276 0.00086 69_[+1]_3 chrI:7849229-7849309 0.00086 5_[+1]_67 chrX:9863064-9863144 0.00086 64_[+1]_8 chrI:9738561-9738641 0.00086 11_[+1]_61 chrV:13716686-13716766 0.001 33_[+1]_39 chrIII:5981338-5981418 0.001 70_[+1]_2 chrIV:17171938-17172018 0.001 64_[+1]_8 chrI:4517062-4517142 0.001 52_[+1]_20 chrII:9010135-9010215 0.001 60_[+1]_12 chrIV:4530353-4530433 0.001 19_[+1]_53 chrV:8795636-8795716 0.0011 52_[+1]_20 chrIII:6819690-6819770 0.0011 18_[+1]_54 chrIV:6276013-6276093 0.0011 37_[+1]_35 chrV:13730937-13731017 0.0012 7_[+1]_65 chrV:16175395-16175475 0.0012 52_[+1]_20 chrIV:1075626-1075706 0.0012 71_[+1]_1 chrI:6418817-6418897 0.0014 45_[+1]_27 chrV:5067488-5067568 0.0014 58_[+1]_14 chrII:5585988-5586068 0.0014 62_[+1]_10 chrII:7779084-7779164 0.0014 47_[+1]_25 chrV:17662370-17662450 0.0014 59_[+1]_13 chrII:8384517-8384597 0.0015 49_[+1]_23 chrII:13073234-13073314 0.0015 55_[+1]_17 chrX:3576416-3576496 0.0016 64_[+1]_8 chrV:19697548-19697628 0.0016 3_[+1]_69 chrII:6123173-6123253 0.0016 25_[+1]_47 chrV:5560026-5560106 0.0017 15_[+1]_57 chrX:13919769-13919849 0.0018 22_[+1]_50 chrX:5831971-5832051 0.0022 30_[+1]_42 chrII:6781335-6781415 0.0023 63_[+1]_9 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTKATMAG MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTKATMAG width=8 seqs=192 chrIV:3900012-3900092 ( 8) CTTATCAG 1 chrIV:15689244-15689324 ( 45) CTTATCAG 1 chrI:14051891-14051971 ( 38) CTTATCAG 1 chrII:7273727-7273807 ( 54) CTTATCAG 1 chrI:1836268-1836348 ( 21) CTTATCAG 1 chrII:943915-943995 ( 57) CTTATCAG 1 chrV:15298807-15298887 ( 55) CTTATCAG 1 chrX:17471829-17471909 ( 27) CTTATCAG 1 chrII:1728409-1728489 ( 67) CTTATCAG 1 chrV:13212706-13212786 ( 2) CTTATCAG 1 chrII:4770018-4770098 ( 59) CTTATCAG 1 chrII:5323979-5324059 ( 26) CTTATCAG 1 chrX:4480933-4481013 ( 28) CTTATCAG 1 chrI:3710779-3710859 ( 37) CTTATCAG 1 chrV:16174293-16174373 ( 33) CTTATCAG 1 chrI:13692870-13692950 ( 12) CTTATCAG 1 chrIII:12318935-12319015 ( 71) CTTATCAG 1 chrIII:9255946-9256026 ( 62) CTTATCAG 1 chrX:3613803-3613883 ( 48) CTTATCAG 1 chrI:3858242-3858322 ( 25) CTTATCAG 1 chrV:8018075-8018155 ( 51) CTTATCAG 1 chrIV:7326939-7327019 ( 22) CTTATCAG 1 chrX:2836893-2836973 ( 42) CTTATCAG 1 chrII:14964996-14965076 ( 27) CTTATCAG 1 chrX:15097935-15098015 ( 3) CTTATCAG 1 chrIII:3253890-3253970 ( 72) CTTATCAG 1 chrIV:11771169-11771249 ( 36) CTTATCAG 1 chrIV:15393358-15393438 ( 6) CTGATAAG 1 chrIV:8032315-8032395 ( 13) CTGATAAG 1 chrIII:1698994-1699074 ( 59) CTGATAAG 1 chrII:1995888-1995968 ( 59) CTGATAAG 1 chrV:11647967-11648047 ( 46) CTGATAAG 1 chrI:7354324-7354404 ( 56) CTGATAAG 1 chrII:13671046-13671126 ( 72) CTGATAAG 1 chrI:4438001-4438081 ( 6) CTGATAAG 1 chrV:4935258-4935338 ( 27) CTGATAAG 1 chrIV:10439063-10439143 ( 48) CTGATAAG 1 chrV:17694460-17694540 ( 4) CTGATAAG 1 chrV:15323587-15323667 ( 49) CTGATAAG 1 chrI:10833553-10833633 ( 46) CTGATAAG 1 chrV:7075839-7075919 ( 46) CTGATAAG 1 chrIV:3310976-3311056 ( 73) CTGATAAG 1 chrIII:1323705-1323785 ( 32) CTGATAAG 1 chrIII:2239913-2239993 ( 31) CTGATAAG 1 chrIII:2053577-2053657 ( 59) CTGATAAG 1 chrV:8217276-8217356 ( 67) CTGATAAG 1 chrIV:17179744-17179824 ( 23) CTGATAAG 1 chrX:13937571-13937651 ( 73) CTGATAAG 1 chrII:4674363-4674443 ( 26) GTTATCAG 1 chrIII:8479452-8479532 ( 44) GTTATCAG 1 chrII:5912307-5912387 ( 70) GTTATCAG 1 chrV:8019932-8020012 ( 33) GTTATCAG 1 chrX:17140797-17140877 ( 33) GTTATCAG 1 chrIII:1602805-1602885 ( 13) GTTATCAG 1 chrII:915392-915472 ( 73) GTTATCAG 1 chrII:14959422-14959502 ( 51) GTTATCAG 1 chrIII:3475620-3475700 ( 56) GTTATCAG 1 chrIII:2266102-2266182 ( 40) GTTATCAG 1 chrX:2320721-2320801 ( 3) GTTATCAG 1 chrII:6520242-6520322 ( 22) GTTATCAG 1 chrV:2324462-2324542 ( 51) GTTATCAG 1 chrV:1390014-1390094 ( 60) GTTATCAG 1 chrIV:9159171-9159251 ( 44) GTTATCAG 1 chrII:9094590-9094670 ( 18) GTTATCAG 1 chrX:10929320-10929400 ( 5) GTTATCAG 1 chrIII:8291818-8291898 ( 51) GTTATCAG 1 chrIV:4486891-4486971 ( 35) GTTATCAG 1 chrIV:1379144-1379224 ( 49) GTTATCAG 1 chrX:4282527-4282607 ( 47) GTTATCAG 1 chrIII:2508066-2508146 ( 53) GTTATCAG 1 chrII:10134418-10134498 ( 33) GTTATCAG 1 chrV:13893764-13893844 ( 59) GTTATCAG 1 chrIV:17179255-17179335 ( 32) GTTATCAG 1 chrV:8768639-8768719 ( 2) CTTATCAC 1 chrII:3786673-3786753 ( 11) CTTATCAC 1 chrII:5553676-5553756 ( 12) CTTATCAC 1 chrII:13468163-13468243 ( 67) CTTATCAC 1 chrIII:10134624-10134704 ( 48) CTTATCAC 1 chrIV:3988774-3988854 ( 34) CTTATCAC 1 chrIV:9540464-9540544 ( 49) CTTATCAC 1 chrII:2923784-2923864 ( 64) CTTATCAC 1 chrIII:9622255-9622335 ( 16) CTTATCAC 1 chrII:65666-65746 ( 51) CTTATCAC 1 chrV:20526241-20526321 ( 17) CTTATCAC 1 chrII:9157273-9157353 ( 58) GTGATAAG 1 chrV:5820037-5820117 ( 65) GTGATAAG 1 chrIII:2050001-2050081 ( 52) GTGATAAG 1 chrIII:13059488-13059568 ( 54) GTGATAAG 1 chrIII:4668343-4668423 ( 61) GTGATAAG 1 chrIII:13733963-13734043 ( 26) GTGATAAG 1 chrIII:1289304-1289384 ( 53) GTGATAAG 1 chrV:17714460-17714540 ( 68) GTGATAAG 1 chrII:240212-240292 ( 63) GTGATAAG 1 chrIV:3158323-3158403 ( 26) CTGATAAC 1 chrIII:154342-154422 ( 33) CTGATAAC 1 chrV:5027832-5027912 ( 71) CTGATAAC 1 chrI:5376425-5376505 ( 43) CTGATAAC 1 chrX:3031672-3031752 ( 67) CTGATAAC 1 chrII:9498853-9498933 ( 19) CTGATAAC 1 chrIII:9913881-9913961 ( 60) CTGATAAC 1 chrIV:10543550-10543630 ( 26) CTGATAAC 1 chrII:764595-764675 ( 28) CTGATAAC 1 chrII:6883889-6883969 ( 12) CTGATAAC 1 chrI:1015086-1015166 ( 23) CTGATAAC 1 chrIII:2253199-2253279 ( 36) CTGATAAC 1 chrX:7576111-7576191 ( 5) TTTATCAG 1 chrI:8218473-8218553 ( 25) TTTATCAG 1 chrI:6283256-6283336 ( 25) TTTATCAG 1 chrII:2677748-2677828 ( 33) CTGATCAA 1 chrII:1101586-1101666 ( 56) TTTATCAG 1 chrII:5748551-5748631 ( 63) TTTATCAG 1 chrIV:1266309-1266389 ( 47) TTTATCAG 1 chrI:986794-986874 ( 51) GTTATCAC 1 chrV:13268207-13268287 ( 65) GTTATCAC 1 chrX:7578510-7578590 ( 58) CTTATCAA 1 chrII:8625263-8625343 ( 22) CTTATCAA 1 chrV:11941824-11941904 ( 52) CTTATCAA 1 chrIV:6048614-6048694 ( 64) CTTATCAA 1 chrII:334168-334248 ( 68) CTTATCAA 1 chrIII:8051116-8051196 ( 6) CTTATCAA 1 chrII:2323295-2323375 ( 47) CTTATCAA 1 chrI:12545087-12545167 ( 5) CTTATCAA 1 chrI:10409046-10409126 ( 67) CTTATCAA 1 chrI:4161197-4161277 ( 13) CTTATCAA 1 chrIV:13327198-13327278 ( 13) ATTATCAG 1 chrIII:8400606-8400686 ( 50) ATTATCAG 1 chrX:3256925-3257005 ( 10) ATTATCAG 1 chrIV:1148929-1149009 ( 13) ATTATCAG 1 chrIII:3887799-3887879 ( 65) TTGATAAG 1 chrV:9373630-9373710 ( 10) TTGATAAG 1 chrV:10399419-10399499 ( 21) TTGATAAG 1 chrV:11080761-11080841 ( 17) TTGATAAG 1 chrV:4630487-4630567 ( 52) TTGATAAG 1 chrII:1949301-1949381 ( 65) TTGATAAG 1 chrX:2838759-2838839 ( 29) TTGATAAG 1 chrI:5408457-5408537 ( 35) TTGATAAG 1 chrV:10281590-10281670 ( 33) TTGATAAG 1 chrV:11403847-11403927 ( 68) TTGATAAG 1 chrV:13577019-13577099 ( 26) TTGATAAG 1 chrII:2090757-2090837 ( 59) TTGATAAG 1 chrIII:4039904-4039984 ( 42) GTGATAAC 1 chrIV:12599316-12599396 ( 14) TTGATCAC 1 chrV:8781304-8781384 ( 57) GTGATAAC 1 chrIV:8450691-8450771 ( 44) CTTATCAT 1 chrIII:8748785-8748865 ( 13) CTGATAAA 1 chrV:18462499-18462579 ( 17) CTTATCAT 1 chrV:8386298-8386378 ( 55) CTGATAAA 1 chrIV:3922051-3922131 ( 68) CTGATAAA 1 chrIV:4482717-4482797 ( 45) CTGATAAA 1 chrIII:6693401-6693481 ( 35) TTTATAAG 1 chrIV:3944613-3944693 ( 19) CTTATCAT 1 chrV:2810330-2810410 ( 43) CTTATCAT 1 chrV:11403237-11403317 ( 36) CTGATAAA 1 chrV:9924656-9924736 ( 40) TTTATCAC 1 chrX:10479544-10479624 ( 17) TTTATCAC 1 chrIV:11257621-11257701 ( 47) TTTATCAC 1 chrV:332770-332850 ( 66) GTTATCAA 1 chrII:112412-112492 ( 5) GTTATCAA 1 chrIV:11289113-11289193 ( 29) GTTATCAA 1 chrX:17694846-17694926 ( 1) GTTATCAA 1 chrX:6098550-6098630 ( 73) ATGATAAG 1 chrX:11556497-11556577 ( 1) CTGATCGG 1 chrI:5031196-5031276 ( 70) ATGATAAG 1 chrI:7849229-7849309 ( 6) ATGATAAG 1 chrX:9863064-9863144 ( 65) ATGATAAG 1 chrI:9738561-9738641 ( 12) ATGATAAG 1 chrV:13716686-13716766 ( 34) CTGATAAT 1 chrIII:5981338-5981418 ( 71) CTGATAAT 1 chrIV:17171938-17172018 ( 65) CTGATAAT 1 chrI:4517062-4517142 ( 53) CTGATAAT 1 chrII:9010135-9010215 ( 61) ATTATCAC 1 chrIV:4530353-4530433 ( 20) CTGATAAT 1 chrV:8795636-8795716 ( 53) TTGATAAC 1 chrIII:6819690-6819770 ( 19) TTGATAAC 1 chrIV:6276013-6276093 ( 38) TTGATAAC 1 chrV:13730937-13731017 ( 8) GTTATCAT 1 chrV:16175395-16175475 ( 53) GTGATAAA 1 chrIV:1075626-1075706 ( 72) GTTATCAT 1 chrI:6418817-6418897 ( 46) TTTATCAA 1 chrV:5067488-5067568 ( 59) ATGATAAC 1 chrII:5585988-5586068 ( 63) ATGATAAC 1 chrII:7779084-7779164 ( 48) ATGATAAC 1 chrV:17662370-17662450 ( 60) ATGATAAC 1 chrII:8384517-8384597 ( 50) ATGATCAA 1 chrII:13073234-13073314 ( 56) GTTATCGG 1 chrX:3576416-3576496 ( 65) CTTATCGC 1 chrV:19697548-19697628 ( 4) CTTATCGC 1 chrII:6123173-6123253 ( 26) CTTATCGC 1 chrV:5560026-5560106 ( 16) ATTATCAA 1 chrX:13919769-13919849 ( 23) TTTATCAT 1 chrX:5831971-5832051 ( 31) ATGATAAA 1 chrII:6781335-6781415 ( 64) TTGATAAT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTKATMAG MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 7.00693 E= 2.1e-131 -181 149 33 -106 -1423 -1423 -1423 167 -1423 -1423 122 83 169 -1423 -1423 -1423 -1423 -1423 -1423 167 46 162 -1423 -1423 165 -1423 -287 -1423 -125 24 162 -221 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTKATMAG MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 192 E= 2.1e-131 0.088542 0.520833 0.239583 0.151042 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.442708 0.557292 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.427083 0.572917 0.000000 0.000000 0.973958 0.000000 0.026042 0.000000 0.130208 0.218750 0.583333 0.067708 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTKATMAG MEME-1 regular expression -------------------------------------------------------------------------------- [CG]T[TG]AT[CA]A[GC] -------------------------------------------------------------------------------- Time 4.66 secs. ******************************************************************************** ******************************************************************************** MOTIF GATAAGAG MEME-2 width = 8 sites = 31 llr = 262 E-value = 4.0e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif GATAAGAG MEME-2 Description -------------------------------------------------------------------------------- Simplified A :a3aa:6: pos.-specific C :::::::2 probability G a:1::a28 matrix T ::6:::2: bits 2.4 * * 2.2 * * 1.9 * * 1.7 ** * * * Relative 1.5 ** *** * Entropy 1.2 ** *** * (12.2 bits) 1.0 ** *** * 0.7 ** *** * 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GATAAGAG consensus A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GATAAGAG MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrI:10104949-10105029 2 1.99e-05 T GATAAGAG AAAAGCGTCG chrX:15276431-15276511 22 1.99e-05 CATCGGCAAA GATAAGAG AAAATTAAAT chrII:13468163-13468243 23 1.99e-05 TTAATACCTT GATAAGAG TTGTACCAAC chrIII:1602805-1602885 40 1.99e-05 TAACAAATAT GATAAGAG AAATCAGAGA chrX:7576111-7576191 73 1.99e-05 GGGAAAATGA GATAAGAG chrI:4158237-4158317 4 1.99e-05 AGA GATAAGAG ACCTAACCTC chrI:8218473-8218553 61 1.99e-05 TAAACATTTT GATAAGAG ATGGAGAAAT chrI:13692870-13692950 48 1.99e-05 AAAAAAAAGT GATAAGAG AAATCACTGT chrII:5323979-5324059 70 3.21e-05 AAATGTCAGT GATAAGGG AGA chrV:13716686-13716766 56 5.17e-05 GTATTTGTGG GAAAAGAG CAAACTAGTC chrIII:6819690-6819770 10 5.17e-05 AGCAGCATT GAAAAGAG ATTGATAACC chrIII:5840347-5840427 46 5.17e-05 GGCTTTGCAT GAAAAGAG AGCCGCTTTT chrIII:9622255-9622335 40 5.17e-05 TTTCAGCTGG GAAAAGAG CCTATCTTCT chrII:5912307-5912387 38 8.39e-05 agtgagagaa gagaagag agcagagaga chrIII:13059488-13059568 30 8.39e-05 GAGAACATTT GATAAGTG ATAACCGAAC chrV:17714460-17714540 58 8.39e-05 AATAATAAAT GATAAGTG GTGTGATAAG chrX:2203889-2203969 50 8.39e-05 AAAAGATGGA GAGAAGAG ATAAGATTGC chrV:11080761-11080841 43 1.15e-04 TAACACCAGA GATAAGAC TATCACTGAA chrV:5027832-5027912 24 1.15e-04 ATGTACTACG GAAAAGGG GAAATATTTG chrIII:2050001-2050081 38 1.15e-04 GGAAAAATGT GATAAGAC CACTTGGTGA chrIV:14050579-14050659 50 1.15e-04 GACTGCTAGA GATAAGAC ATAGAACAGC chrIV:12599316-12599396 41 1.15e-04 AATTGATAGA GAAAAGGG GAATAATGGG chrIV:11771169-11771249 70 1.15e-04 TACACGAACT GATAAGAC TGA chrI:5408457-5408537 60 1.23e-04 GAGAAATAGG GAGAAGGG AGGGTAAACA chrV:5560026-5560106 32 1.55e-04 AACAGGCGGG GAAAAGTG GACACGTTTC chrIV:4482717-4482797 11 1.55e-04 AGCTCATTTC GATAAGGC GAAGGTTGGT chrIII:4039904-4039984 21 1.55e-04 ATAAACAAAC GAAAAGTG GCTGAAAATG chrII:7779084-7779164 5 1.55e-04 TTCT GAAAAGTG CACTCAATGC chrV:20526241-20526321 26 1.55e-04 CCTTATCACC GATAAGGC TCTTTCCAGG chrIV:1379144-1379224 8 1.86e-04 TATCAGT GATAAGCG CCCCTGAACC chrI:9738561-9738641 51 2.53e-04 ATGGCCAATT GATAGGAG AATCAGAGAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GATAAGAG MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:10104949-10105029 2e-05 1_[+2]_71 chrX:15276431-15276511 2e-05 21_[+2]_51 chrII:13468163-13468243 2e-05 22_[+2]_50 chrIII:1602805-1602885 2e-05 39_[+2]_33 chrX:7576111-7576191 2e-05 72_[+2] chrI:4158237-4158317 2e-05 3_[+2]_69 chrI:8218473-8218553 2e-05 60_[+2]_12 chrI:13692870-13692950 2e-05 47_[+2]_25 chrII:5323979-5324059 3.2e-05 69_[+2]_3 chrV:13716686-13716766 5.2e-05 55_[+2]_17 chrIII:6819690-6819770 5.2e-05 9_[+2]_63 chrIII:5840347-5840427 5.2e-05 45_[+2]_27 chrIII:9622255-9622335 5.2e-05 39_[+2]_33 chrII:5912307-5912387 8.4e-05 37_[+2]_35 chrIII:13059488-13059568 8.4e-05 29_[+2]_43 chrV:17714460-17714540 8.4e-05 57_[+2]_15 chrX:2203889-2203969 8.4e-05 49_[+2]_23 chrV:11080761-11080841 0.00012 42_[+2]_30 chrV:5027832-5027912 0.00012 23_[+2]_49 chrIII:2050001-2050081 0.00012 37_[+2]_35 chrIV:14050579-14050659 0.00012 49_[+2]_23 chrIV:12599316-12599396 0.00012 40_[+2]_32 chrIV:11771169-11771249 0.00012 69_[+2]_3 chrI:5408457-5408537 0.00012 59_[+2]_13 chrV:5560026-5560106 0.00015 31_[+2]_41 chrIV:4482717-4482797 0.00015 10_[+2]_62 chrIII:4039904-4039984 0.00015 20_[+2]_52 chrII:7779084-7779164 0.00015 4_[+2]_68 chrV:20526241-20526321 0.00015 25_[+2]_47 chrIV:1379144-1379224 0.00019 7_[+2]_65 chrI:9738561-9738641 0.00025 50_[+2]_22 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GATAAGAG MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GATAAGAG width=8 seqs=31 chrI:10104949-10105029 ( 2) GATAAGAG 1 chrX:15276431-15276511 ( 22) GATAAGAG 1 chrII:13468163-13468243 ( 23) GATAAGAG 1 chrIII:1602805-1602885 ( 40) GATAAGAG 1 chrX:7576111-7576191 ( 73) GATAAGAG 1 chrI:4158237-4158317 ( 4) GATAAGAG 1 chrI:8218473-8218553 ( 61) GATAAGAG 1 chrI:13692870-13692950 ( 48) GATAAGAG 1 chrII:5323979-5324059 ( 70) GATAAGGG 1 chrV:13716686-13716766 ( 56) GAAAAGAG 1 chrIII:6819690-6819770 ( 10) GAAAAGAG 1 chrIII:5840347-5840427 ( 46) GAAAAGAG 1 chrIII:9622255-9622335 ( 40) GAAAAGAG 1 chrII:5912307-5912387 ( 38) GAGAAGAG 1 chrIII:13059488-13059568 ( 30) GATAAGTG 1 chrV:17714460-17714540 ( 58) GATAAGTG 1 chrX:2203889-2203969 ( 50) GAGAAGAG 1 chrV:11080761-11080841 ( 43) GATAAGAC 1 chrV:5027832-5027912 ( 24) GAAAAGGG 1 chrIII:2050001-2050081 ( 38) GATAAGAC 1 chrIV:14050579-14050659 ( 50) GATAAGAC 1 chrIV:12599316-12599396 ( 41) GAAAAGGG 1 chrIV:11771169-11771249 ( 70) GATAAGAC 1 chrI:5408457-5408537 ( 60) GAGAAGGG 1 chrV:5560026-5560106 ( 32) GAAAAGTG 1 chrIV:4482717-4482797 ( 11) GATAAGGC 1 chrIII:4039904-4039984 ( 21) GAAAAGTG 1 chrII:7779084-7779164 ( 5) GAAAAGTG 1 chrV:20526241-20526321 ( 26) GATAAGGC 1 chrIV:1379144-1379224 ( 8) GATAAGCG 1 chrI:9738561-9738641 ( 51) GATAGGAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GATAAGAG MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.4993 E= 4.0e-001 -1160 -1160 240 -1160 169 -1160 -1160 -1160 -9 -1160 -97 96 169 -1160 -1160 -1160 164 -1160 -256 -1160 -1160 -1160 240 -1160 98 -252 3 -96 -1160 6 209 -1160 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GATAAGAG MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 31 E= 4.0e-001 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.290323 0.000000 0.096774 0.612903 1.000000 0.000000 0.000000 0.000000 0.967742 0.000000 0.032258 0.000000 0.000000 0.000000 1.000000 0.000000 0.612903 0.032258 0.193548 0.161290 0.000000 0.193548 0.806452 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GATAAGAG MEME-2 regular expression -------------------------------------------------------------------------------- GA[TA]AAGAG -------------------------------------------------------------------------------- Time 7.94 secs. ******************************************************************************** ******************************************************************************** MOTIF CCGCCCAC MEME-3 width = 8 sites = 2 llr = 26 E-value = 4.6e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCGCCCAC MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::::::a: pos.-specific C aa:aaa:a probability G ::a::::: matrix T :::::::: bits 2.4 ****** * 2.2 ****** * 1.9 ****** * 1.7 ******** Relative 1.5 ******** Entropy 1.2 ******** (18.7 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CCGCCCAC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGCCCAC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrII:1101586-1101666 8 2.44e-06 CAAATTC CCGCCCAC CCACCTGATT chrX:7064831-7064911 42 2.44e-06 TACCGACGCT CCGCCCAC ATTTTCATCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGCCCAC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:1101586-1101666 2.4e-06 7_[+3]_65 chrX:7064831-7064911 2.4e-06 41_[+3]_31 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGCCCAC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCGCCCAC width=8 seqs=2 chrII:1101586-1101666 ( 8) CCGCCCAC 1 chrX:7064831-7064911 ( 42) CCGCCCAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGCCCAC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 12.3073 E= 4.6e+003 -765 242 -765 -765 -765 242 -765 -765 -765 -765 239 -765 -765 242 -765 -765 -765 242 -765 -765 -765 242 -765 -765 168 -765 -765 -765 -765 242 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGCCCAC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 4.6e+003 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGCCCAC MEME-3 regular expression -------------------------------------------------------------------------------- CCGCCCAC -------------------------------------------------------------------------------- Time 11.14 secs. ******************************************************************************** ******************************************************************************** MOTIF TTCKYYGA MEME-4 width = 8 sites = 36 llr = 288 E-value = 5.0e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTCKYYGA MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::::::a pos.-specific C 2:a:45:: probability G :1:32:a: matrix T 89:745:: bits 2.4 * * 2.2 * * 1.9 * * 1.7 * ** Relative 1.5 * ** Entropy 1.2 ** ** (11.5 bits) 1.0 **** *** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TTCTCCGA consensus C GTT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTCKYYGA MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrV:5820037-5820117 8 1.17e-05 GCGGAAT TTCTCCGA ATTGACGTTA chrX:3256925-3257005 20 1.17e-05 ATTATCAGTT TTCTCCGA CCGTTCTGCG chrV:17662370-17662450 20 1.17e-05 GATACACATC TTCTCCGA AAACTATCAA chrII:2923784-2923864 41 1.17e-05 CTCCCCACTT TTCTCCGA AACTTTTTCC chrII:6781335-6781415 9 1.17e-05 TGTTAATT TTCTCCGA ATTTTTCGTA chrII:6123173-6123253 48 1.17e-05 TCTCGCTCGT TTCTCCGA CAATGACCCT chrX:7578510-7578590 9 3.86e-05 GGTGCGAT TTCTCTGA ATCGCACGAT chrIV:17179255-17179335 47 3.86e-05 CAGTTGAAGT TTCTCTGA AAACTGAGAG chrII:4770018-4770098 31 7.74e-05 TAACCAATTT TTCGCTGA ACGGGGCTCG chrIV:6048614-6048694 5 7.74e-05 TCGA TTCTTCGA TTTATTTTTT chrX:3193984-3194064 62 7.74e-05 GCTTCTAGTG CTCTCCGA CGAGAATAAA chrV:19697548-19697628 15 7.74e-05 TTATCGCATT TTCTTCGA TTATTCTCGC chrII:65666-65746 7 7.74e-05 TTTTTT TTCGCTGA AGAAGCTCGC chrI:10409046-10409126 52 7.74e-05 TTCACCCCAA TTCTTCGA GTTCTTCCTT chrX:7317076-7317156 70 1.06e-04 TGATGAAAGT TTCTGCGA AAT chrV:5027832-5027912 52 1.58e-04 ATAGGGAGGT TTCGGCGA TAATGATATA chrII:1949301-1949381 7 1.58e-04 TCGGTA TTCTTTGA TCGGAAGTAC chrII:112412-112492 69 1.58e-04 AATCGAGAAA TTCGGCGA AAAC chrIII:778498-778578 51 1.58e-04 TAGGGAAATG CTCTCTGA CAACGTGTGA chrIII:9622255-9622335 54 1.58e-04 AGAGCCTATC TTCTTTGA TTCTACAAAG chrIII:5981338-5981418 37 1.97e-04 GGCCGTTTGA CTCTTCGA GGGTGAAAAA chrV:15298807-15298887 21 1.97e-04 AATTATCACC TTCGTTGA TATCATCATT chrV:11647967-11648047 73 1.97e-04 ATTGAACCAA TTCGTTGA chrII:6520242-6520322 54 1.97e-04 GCGTTTCCAT TTCGTTGA AACCGTCCAT chrII:9094590-9094670 26 1.97e-04 TTGTTATCAG TTCGTTGA AAGTGGAGGG chrII:10594981-10595061 49 2.24e-04 GAGTGTCTGC TTCTGTGA TGTCTCCACA chrX:14208019-14208099 35 2.24e-04 CGTTTTTCAG TGCTCCGA GTCTTGTTCT chrX:10340184-10340264 13 2.24e-04 AAGAAGGGTC TGCTCCGA CAAGTTTCTC chrII:1101586-1101666 37 2.31e-04 TCACCGATGA CTCGTCGA TTTTCGCAGT chrIV:10482722-10482802 61 2.31e-04 AGAGAGCGTG CTCGTCGA GTTTATAGCC chrI:2019484-2019564 22 2.55e-04 CAGTTTTTGT TTCGGTGA ATGATTTCCC chrIII:3887799-3887879 36 2.79e-04 GGCGCTTCTT CTCTTTGA GGGAACTTGT chrII:5585988-5586068 40 2.79e-04 TACTTGCCAG CTCTTTGA TAAAGACTAT chrX:8492796-8492876 58 2.91e-04 ATTCAATTGT TGCTCTGA AAAATAGACG chrX:2841921-2842001 34 3.39e-04 GAGACAATAA TGCGCTGA CAAAGACGAA chrIV:11257621-11257701 18 3.39e-04 TATGCTTCCA CTCTGTGA TATCATTATT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTCKYYGA MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:5820037-5820117 1.2e-05 7_[+4]_65 chrX:3256925-3257005 1.2e-05 19_[+4]_53 chrV:17662370-17662450 1.2e-05 19_[+4]_53 chrII:2923784-2923864 1.2e-05 40_[+4]_32 chrII:6781335-6781415 1.2e-05 8_[+4]_64 chrII:6123173-6123253 1.2e-05 47_[+4]_25 chrX:7578510-7578590 3.9e-05 8_[+4]_64 chrIV:17179255-17179335 3.9e-05 46_[+4]_26 chrII:4770018-4770098 7.7e-05 30_[+4]_42 chrIV:6048614-6048694 7.7e-05 4_[+4]_68 chrX:3193984-3194064 7.7e-05 61_[+4]_11 chrV:19697548-19697628 7.7e-05 14_[+4]_58 chrII:65666-65746 7.7e-05 6_[+4]_66 chrI:10409046-10409126 7.7e-05 51_[+4]_21 chrX:7317076-7317156 0.00011 69_[+4]_3 chrV:5027832-5027912 0.00016 51_[+4]_21 chrII:1949301-1949381 0.00016 6_[+4]_66 chrII:112412-112492 0.00016 68_[+4]_4 chrIII:778498-778578 0.00016 50_[+4]_22 chrIII:9622255-9622335 0.00016 53_[+4]_19 chrIII:5981338-5981418 0.0002 36_[+4]_36 chrV:15298807-15298887 0.0002 20_[+4]_52 chrV:11647967-11648047 0.0002 72_[+4] chrII:6520242-6520322 0.0002 53_[+4]_19 chrII:9094590-9094670 0.0002 25_[+4]_47 chrII:10594981-10595061 0.00022 48_[+4]_24 chrX:14208019-14208099 0.00022 34_[+4]_38 chrX:10340184-10340264 0.00022 12_[+4]_60 chrII:1101586-1101666 0.00023 36_[+4]_36 chrIV:10482722-10482802 0.00023 60_[+4]_12 chrI:2019484-2019564 0.00026 21_[+4]_51 chrIII:3887799-3887879 0.00028 35_[+4]_37 chrII:5585988-5586068 0.00028 39_[+4]_33 chrX:8492796-8492876 0.00029 57_[+4]_15 chrX:2841921-2842001 0.00034 33_[+4]_39 chrIV:11257621-11257701 0.00034 17_[+4]_55 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTCKYYGA MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTCKYYGA width=8 seqs=36 chrV:5820037-5820117 ( 8) TTCTCCGA 1 chrX:3256925-3257005 ( 20) TTCTCCGA 1 chrV:17662370-17662450 ( 20) TTCTCCGA 1 chrII:2923784-2923864 ( 41) TTCTCCGA 1 chrII:6781335-6781415 ( 9) TTCTCCGA 1 chrII:6123173-6123253 ( 48) TTCTCCGA 1 chrX:7578510-7578590 ( 9) TTCTCTGA 1 chrIV:17179255-17179335 ( 47) TTCTCTGA 1 chrII:4770018-4770098 ( 31) TTCGCTGA 1 chrIV:6048614-6048694 ( 5) TTCTTCGA 1 chrX:3193984-3194064 ( 62) CTCTCCGA 1 chrV:19697548-19697628 ( 15) TTCTTCGA 1 chrII:65666-65746 ( 7) TTCGCTGA 1 chrI:10409046-10409126 ( 52) TTCTTCGA 1 chrX:7317076-7317156 ( 70) TTCTGCGA 1 chrV:5027832-5027912 ( 52) TTCGGCGA 1 chrII:1949301-1949381 ( 7) TTCTTTGA 1 chrII:112412-112492 ( 69) TTCGGCGA 1 chrIII:778498-778578 ( 51) CTCTCTGA 1 chrIII:9622255-9622335 ( 54) TTCTTTGA 1 chrIII:5981338-5981418 ( 37) CTCTTCGA 1 chrV:15298807-15298887 ( 21) TTCGTTGA 1 chrV:11647967-11648047 ( 73) TTCGTTGA 1 chrII:6520242-6520322 ( 54) TTCGTTGA 1 chrII:9094590-9094670 ( 26) TTCGTTGA 1 chrII:10594981-10595061 ( 49) TTCTGTGA 1 chrX:14208019-14208099 ( 35) TGCTCCGA 1 chrX:10340184-10340264 ( 13) TGCTCCGA 1 chrII:1101586-1101666 ( 37) CTCGTCGA 1 chrIV:10482722-10482802 ( 61) CTCGTCGA 1 chrI:2019484-2019564 ( 22) TTCGGTGA 1 chrIII:3887799-3887879 ( 36) CTCTTTGA 1 chrII:5585988-5586068 ( 40) CTCTTTGA 1 chrX:8492796-8492876 ( 58) TGCTCTGA 1 chrX:2841921-2842001 ( 34) TGCGCTGA 1 chrIV:11257621-11257701 ( 18) CTCTGTGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTCKYYGA MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.389 E= 5.0e+003 -1181 26 -1181 131 -1181 -1181 -77 150 -1181 243 -1181 -1181 -1181 -1181 81 108 -1181 126 -19 31 -1181 143 -1181 67 -1181 -1181 240 -1181 169 -1181 -1181 -1181 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTCKYYGA MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 36 E= 5.0e+003 0.000000 0.222222 0.000000 0.777778 0.000000 0.000000 0.111111 0.888889 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.333333 0.666667 0.000000 0.444444 0.166667 0.388889 0.000000 0.500000 0.000000 0.500000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTCKYYGA MEME-4 regular expression -------------------------------------------------------------------------------- [TC]TC[TG][CT][CT]GA -------------------------------------------------------------------------------- Time 14.36 secs. ******************************************************************************** ******************************************************************************** MOTIF YTCTTATC MEME-5 width = 8 sites = 31 llr = 259 E-value = 5.3e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif YTCTTATC MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::9:: pos.-specific C 437::1:a probability G ::3::::: matrix T 57:aa:a: bits 2.4 * 2.2 * 1.9 * 1.7 ** ** Relative 1.5 *** ** Entropy 1.2 ****** (12.1 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TTCTTATC consensus CCG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTCTTATC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:3235545-3235625 61 1.94e-05 CCGTGGCAAA CTCTTATC TTTGCCATCT chrIII:8400606-8400686 32 1.94e-05 ACGCAATAAA CTCTTATC GTATTTCTAC chrI:8218473-8218553 8 1.94e-05 GCTTTTT CTCTTATC ATTCAACATT chrV:13138084-13138164 56 1.94e-05 TTATTTGACA CTCTTATC TTAATAATTG chrX:15097935-15098015 44 1.94e-05 CATTAATATG CTCTTATC ATTTTGATTT chrIII:1323705-1323785 62 1.94e-05 TTATCAGAGT CTCTTATC TCTCTAAAAG chrV:8781304-8781384 11 1.94e-05 ttctcttttt ctcttatc tACCTCCCAT chrV:18246254-18246334 54 6.36e-05 AAAAGCCTTT TTCTTATC GATGCTTTCA chrII:3786673-3786753 28 6.36e-05 CACACATACG CCCTTATC ACCTCATAAC chrV:13268207-13268287 22 6.36e-05 CCCATCTTAT TTCTTATC AATATTTCGA chrIV:3988774-3988854 2 6.36e-05 T CCCTTATC AATCCAAAAC chrIII:2266102-2266182 67 6.36e-05 TAAATATACA TTCTTATC AATTTT chrII:9498853-9498933 28 6.36e-05 GCTGATAACT TTCTTATC ATTTTTAGCC chrX:11556497-11556577 64 6.36e-05 CCCGTTTGTG TTCTTATC TAAACCGTC chrV:8018075-8018155 12 6.36e-05 AGTGAGTATA TTCTTATC GTTTTTTTTT chrI:1836268-1836348 2 8.30e-05 C TCCTTATC ACCATAATTT chrIV:10543550-10543630 35 8.30e-05 GCTGATAACC TCCTTATC ATCTTATTTT chrIII:6693401-6693481 26 1.03e-04 TACAAATATA CTGTTATC ATTTATAAGT chrIV:15393358-15393438 34 1.48e-04 ACAAAAACTA TTGTTATC ACTTATCACT chrV:4630487-4630567 29 1.48e-04 TTTTTTCCTC TTGTTATC GCTATCATAA chrV:8217276-8217356 39 1.48e-04 CGTCAATCAA CCGTTATC AGGAATGTTT chrIII:9474707-9474787 30 1.60e-04 ACCCAACCTC CTCTTCTC CTAGATTGCA chrX:10340184-10340264 28 1.60e-04 CGACAAGTTT CTCTTCTC ACCGTGTGCG chrIII:154342-154422 3 1.79e-04 CA TCGTTATC ATATTACACA chrX:3576416-3576496 5 1.79e-04 ATAC TCGTTATC TCTCCGTCTC chrI:6081570-6081650 20 1.79e-04 AAAGAATAAT TCGTTATC TTCCCTGATT chrII:915392-915472 11 1.79e-04 GATAACATTT TCGTTATC TATTTTTCTC chrII:2323295-2323375 28 1.79e-04 GATCACCAGT TCGTTATC AAGGCTTAAT chrII:5751513-5751593 2 2.06e-04 A TTCTTCTC AAACAAAGCG chrIII:8748785-8748865 45 2.06e-04 GTCTAGATCA TTCTTCTC TTTTTTATTG chrII:9010135-9010215 2 2.76e-04 G GTCTTATC GCACACTGGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTCTTATC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:3235545-3235625 1.9e-05 60_[+5]_12 chrIII:8400606-8400686 1.9e-05 31_[+5]_41 chrI:8218473-8218553 1.9e-05 7_[+5]_65 chrV:13138084-13138164 1.9e-05 55_[+5]_17 chrX:15097935-15098015 1.9e-05 43_[+5]_29 chrIII:1323705-1323785 1.9e-05 61_[+5]_11 chrV:8781304-8781384 1.9e-05 10_[+5]_62 chrV:18246254-18246334 6.4e-05 53_[+5]_19 chrII:3786673-3786753 6.4e-05 27_[+5]_45 chrV:13268207-13268287 6.4e-05 21_[+5]_51 chrIV:3988774-3988854 6.4e-05 1_[+5]_71 chrIII:2266102-2266182 6.4e-05 66_[+5]_6 chrII:9498853-9498933 6.4e-05 27_[+5]_45 chrX:11556497-11556577 6.4e-05 63_[+5]_9 chrV:8018075-8018155 6.4e-05 11_[+5]_61 chrI:1836268-1836348 8.3e-05 1_[+5]_71 chrIV:10543550-10543630 8.3e-05 34_[+5]_38 chrIII:6693401-6693481 0.0001 25_[+5]_47 chrIV:15393358-15393438 0.00015 33_[+5]_39 chrV:4630487-4630567 0.00015 28_[+5]_44 chrV:8217276-8217356 0.00015 38_[+5]_34 chrIII:9474707-9474787 0.00016 29_[+5]_43 chrX:10340184-10340264 0.00016 27_[+5]_45 chrIII:154342-154422 0.00018 2_[+5]_70 chrX:3576416-3576496 0.00018 4_[+5]_68 chrI:6081570-6081650 0.00018 19_[+5]_53 chrII:915392-915472 0.00018 10_[+5]_62 chrII:2323295-2323375 0.00018 27_[+5]_45 chrII:5751513-5751593 0.00021 1_[+5]_71 chrIII:8748785-8748865 0.00021 44_[+5]_28 chrII:9010135-9010215 0.00028 1_[+5]_71 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTCTTATC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF YTCTTATC width=8 seqs=31 chrX:3235545-3235625 ( 61) CTCTTATC 1 chrIII:8400606-8400686 ( 32) CTCTTATC 1 chrI:8218473-8218553 ( 8) CTCTTATC 1 chrV:13138084-13138164 ( 56) CTCTTATC 1 chrX:15097935-15098015 ( 44) CTCTTATC 1 chrIII:1323705-1323785 ( 62) CTCTTATC 1 chrV:8781304-8781384 ( 11) CTCTTATC 1 chrV:18246254-18246334 ( 54) TTCTTATC 1 chrII:3786673-3786753 ( 28) CCCTTATC 1 chrV:13268207-13268287 ( 22) TTCTTATC 1 chrIV:3988774-3988854 ( 2) CCCTTATC 1 chrIII:2266102-2266182 ( 67) TTCTTATC 1 chrII:9498853-9498933 ( 28) TTCTTATC 1 chrX:11556497-11556577 ( 64) TTCTTATC 1 chrV:8018075-8018155 ( 12) TTCTTATC 1 chrI:1836268-1836348 ( 2) TCCTTATC 1 chrIV:10543550-10543630 ( 35) TCCTTATC 1 chrIII:6693401-6693481 ( 26) CTGTTATC 1 chrIV:15393358-15393438 ( 34) TTGTTATC 1 chrV:4630487-4630567 ( 29) TTGTTATC 1 chrV:8217276-8217356 ( 39) CCGTTATC 1 chrIII:9474707-9474787 ( 30) CTCTTCTC 1 chrX:10340184-10340264 ( 28) CTCTTCTC 1 chrIII:154342-154422 ( 3) TCGTTATC 1 chrX:3576416-3576496 ( 5) TCGTTATC 1 chrI:6081570-6081650 ( 20) TCGTTATC 1 chrII:915392-915472 ( 11) TCGTTATC 1 chrII:2323295-2323375 ( 28) TCGTTATC 1 chrII:5751513-5751593 ( 2) TTCTTCTC 1 chrIII:8748785-8748865 ( 45) TTCTTCTC 1 chrII:9010135-9010215 ( 2) GTCTTATC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTCTTATC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.90618 E= 5.3e+001 -1160 117 -256 80 -1160 80 -1160 111 -1160 193 61 -1160 -1160 -1160 -1160 167 -1160 -1160 -1160 167 149 -53 -1160 -1160 -1160 -1160 -1160 167 -1160 243 -1160 -1160 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTCTTATC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 31 E= 5.3e+001 0.000000 0.419355 0.032258 0.548387 0.000000 0.322581 0.000000 0.677419 0.000000 0.709677 0.290323 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.870968 0.129032 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTCTTATC MEME-5 regular expression -------------------------------------------------------------------------------- [TC][TC][CG]TTATC -------------------------------------------------------------------------------- Time 17.58 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:6123173-6123253 1.55e-04 23_[+5(1.94e-05)]_16_[+4(1.17e-05)]_\ 25 chrII:240212-240292 2.85e-02 80 chrX:13937571-13937651 5.44e-04 72_[+1(6.32e-05)] chrIV:17179744-17179824 5.90e-03 22_[+1(6.32e-05)]_50 chrV:20526241-20526321 8.70e-04 14_[+5(8.30e-05)]_58 chrIV:11771169-11771249 1.60e-04 35_[+1(3.14e-05)]_24_[+1(6.32e-05)]_\ 5 chrIV:17179255-17179335 1.22e-03 46_[+4(3.86e-05)]_26 chrII:2090757-2090837 1.30e-01 80 chrV:8217276-8217356 6.88e-04 66_[+1(6.32e-05)]_6 chrIV:4530353-4530433 5.63e-01 80 chrV:8781304-8781384 1.83e-04 10_[+5(1.94e-05)]_62 chrIV:1075626-1075706 7.67e-02 80 chrII:9010135-9010215 2.03e-02 80 chrIII:2053577-2053657 9.03e-03 58_[+1(6.32e-05)]_14 chrV:16175395-16175475 1.74e-01 80 chrV:11403237-11403317 3.84e-01 80 chrV:13893764-13893844 3.58e-02 80 chrI:9738561-9738641 2.58e-02 13_[+2(1.99e-05)]_59 chrI:4517062-4517142 2.35e-01 80 chrIII:2239913-2239993 1.81e-02 30_[+1(6.32e-05)]_42 chrX:9863064-9863144 2.15e-01 80 chrIII:1323705-1323785 2.01e-04 31_[+1(6.32e-05)]_22_[+5(1.94e-05)]_\ 11 chrI:4161197-4161277 1.20e-02 10_[+5(8.30e-05)]_62 chrV:2810330-2810410 2.27e-02 40_[+5(6.36e-05)]_32 chrIV:3310976-3311056 2.35e-02 72_[+1(6.32e-05)] chrX:2203889-2203969 1.96e-02 49_[+2(8.39e-05)]_23 chrI:10409046-10409126 6.35e-04 51_[+4(7.74e-05)]_5_[+5(8.30e-05)]_\ 8 chrV:13577019-13577099 1.48e-01 80 chrII:65666-65746 2.18e-04 6_[+4(7.74e-05)]_34_[+5(1.94e-05)]_\ 24 chrII:1386655-1386735 1.71e-01 80 chrIII:9622255-9622335 5.77e-05 39_[+2(5.17e-05)]_33 chrIV:11257621-11257701 1.92e-02 80 chrII:6781335-6781415 6.93e-03 8_[+4(1.17e-05)]_64 chrIV:10482722-10482802 4.17e-02 80 chrV:12745159-12745239 4.96e-01 80 chrIII:2253199-2253279 2.19e-01 80 chrI:1015086-1015166 8.13e-02 80 chrII:2923784-2923864 6.36e-06 40_[+4(1.17e-05)]_13_[+5(6.36e-05)]_\ 11 chrX:7064831-7064911 1.36e-02 41_[+3(2.44e-06)]_31 chrII:10134418-10134498 3.98e-02 80 chrV:17714460-17714540 2.18e-02 57_[+2(8.39e-05)]_4_[+2(8.39e-05)]_\ 3 chrX:4818999-4819079 4.51e-02 80 chrII:6883889-6883969 2.14e-02 80 chrV:19697548-19697628 1.00e-03 1_[+5(6.36e-05)]_5_[+4(7.74e-05)]_\ 58 chrIII:2508066-2508146 5.41e-02 80 chrIV:6276013-6276093 3.14e-01 80 chrIII:3370164-3370244 2.27e-01 80 chrX:4282527-4282607 1.16e-02 80 chrI:12545087-12545167 5.66e-03 2_[+5(6.36e-05)]_70 chrV:11403847-11403927 6.62e-02 80 chrIV:14885772-14885852 8.11e-01 80 chrX:5831971-5832051 6.14e-01 80 chrIV:1266309-1266389 1.68e-01 80 chrIV:9540464-9540544 4.54e-02 80 chrV:17662370-17662450 5.72e-03 19_[+4(1.17e-05)]_53 chrII:764595-764675 3.44e-02 80 chrIV:3944613-3944693 6.43e-02 16_[+5(8.30e-05)]_56 chrIV:1379144-1379224 1.00e-02 80 chrIII:6693401-6693481 1.66e-02 80 chrV:18324727-18324807 4.84e-01 80 chrIII:3253890-3253970 2.36e-03 14_[+1(6.32e-05)]_49_[+1(3.14e-05)]_\ 1 chrIV:4486891-4486971 8.47e-03 80 chrIII:8291818-8291898 4.25e-02 80 chrV:7075839-7075919 1.01e-02 45_[+1(6.32e-05)]_27 chrX:10929320-10929400 2.39e-02 80 chrV:16143338-16143418 4.98e-01 80 chrII:9094590-9094670 1.34e-03 80 chrI:10833553-10833633 5.27e-02 45_[+1(6.32e-05)]_27 chrX:15097935-15098015 1.04e-03 2_[+1(3.14e-05)]_33_[+5(1.94e-05)]_\ 29 chrIV:12599316-12599396 7.32e-03 80 chrII:14964996-14965076 7.39e-03 26_[+1(3.14e-05)]_46 chrX:2836893-2836973 6.57e-03 41_[+1(3.14e-05)]_31 chrIII:1289304-1289384 7.08e-02 80 chrIII:5840347-5840427 2.48e-02 26_[+2(8.39e-05)]_11_[+2(5.17e-05)]_\ 27 chrII:7779084-7779164 7.94e-02 80 chrX:10340184-10340264 8.21e-03 80 chrV:15323587-15323667 6.25e-02 48_[+1(6.32e-05)]_24 chrIV:9159171-9159251 8.41e-02 80 chrIV:10543550-10543630 2.72e-02 34_[+5(8.30e-05)]_38 chrV:6524924-6525004 3.04e-01 80 chrIII:6117015-6117095 4.44e-01 80 chrV:17694460-17694540 1.14e-01 3_[+1(6.32e-05)]_69 chrIV:7326939-7327019 1.59e-03 21_[+1(3.14e-05)]_51 chrX:3193984-3194064 4.63e-02 61_[+4(7.74e-05)]_11 chrX:13919769-13919849 8.23e-02 80 chrV:5821898-5821978 5.80e-01 80 chrV:1390014-1390094 4.67e-03 80 chrIII:4039904-4039984 5.12e-02 80 chrII:2323295-2323375 4.62e-02 44_[+5(6.36e-05)]_28 chrIV:1148929-1149009 7.95e-02 80 chrV:8018075-8018155 8.11e-03 11_[+5(6.36e-05)]_31_[+1(3.14e-05)]_\ 22 chrIII:8051116-8051196 9.17e-03 3_[+5(8.30e-05)]_69 chrII:334168-334248 8.13e-03 65_[+5(1.94e-05)]_7 chrII:13073234-13073314 9.58e-02 80 chrIV:6048614-6048694 4.13e-03 4_[+4(7.74e-05)]_68 chrIII:778498-778578 4.41e-02 80 chrIV:12890615-12890695 3.69e-01 80 chrIV:4482717-4482797 4.22e-03 80 chrX:10479544-10479624 1.80e-01 80 chrIV:10439063-10439143 2.71e-02 47_[+1(6.32e-05)]_25 chrV:13138084-13138164 2.07e-03 26_[+3(8.23e-05)]_21_[+5(1.94e-05)]_\ 17 chrV:6347113-6347193 2.25e-01 80 chrI:3858242-3858322 1.14e-03 24_[+1(3.14e-05)]_48 chrX:17694846-17694926 5.98e-02 80 chrIII:9913881-9913961 1.11e-01 80 chrIV:11289113-11289193 5.74e-02 80 chrI:2019484-2019564 1.66e-01 80 chrII:5748551-5748631 6.48e-02 80 chrI:7849229-7849309 2.59e-01 80 chrV:5512704-5512784 8.67e-01 80 chrI:5031196-5031276 2.78e-02 80 chrII:1101586-1101666 3.15e-05 7_[+3(2.44e-06)]_65 chrV:10281590-10281670 2.17e-02 80 chrIII:13733963-13734043 9.90e-02 80 chrI:8731621-8731701 6.10e-01 80 chrX:11556497-11556577 9.85e-03 63_[+5(6.36e-05)]_9 chrX:3613803-3613883 3.05e-03 47_[+1(3.14e-05)]_25 chrII:112412-112492 3.46e-03 80 chrIII:9255946-9256026 6.62e-03 61_[+1(3.14e-05)]_11 chrIV:3922051-3922131 1.42e-01 80 chrX:7317076-7317156 1.35e-01 80 chrV:2324462-2324542 1.14e-02 80 chrIII:12318935-12319015 2.53e-04 70_[+1(3.14e-05)]_2 chrX:17601519-17601599 9.61e-01 80 chrII:9498853-9498933 9.47e-03 27_[+5(6.36e-05)]_45 chrV:4935258-4935338 1.80e-01 26_[+1(6.32e-05)]_46 chrX:14208019-14208099 8.54e-02 80 chrV:11941824-11941904 1.42e-02 49_[+5(1.94e-05)]_23 chrI:5287376-5287456 8.16e-01 80 chrIII:6819690-6819770 1.36e-02 9_[+2(5.17e-05)]_63 chrV:15432648-15432728 8.69e-01 80 chrIV:14050579-14050659 9.55e-02 80 chrII:2677748-2677828 1.15e-01 80 chrV:5560026-5560106 1.39e-02 80 chrX:3256925-3257005 2.15e-03 19_[+4(1.17e-05)]_53 chrII:6520242-6520322 1.37e-04 80 chrI:5408457-5408537 7.37e-02 80 chrX:17256909-17256989 8.91e-01 80 chrI:4438001-4438081 1.98e-03 7_[+2(1.99e-05)]_65 chrX:2841921-2842001 1.48e-01 80 chrII:13671046-13671126 2.52e-03 71_[+1(6.32e-05)]_1 chrI:13692870-13692950 5.49e-05 11_[+1(3.14e-05)]_28_[+2(1.99e-05)]_\ 25 chrX:6098550-6098630 1.89e-01 80 chrX:2320721-2320801 9.21e-03 80 chrIII:2266102-2266182 7.14e-03 66_[+5(6.36e-05)]_6 chrIV:8757938-8758018 1.39e-01 80 chrV:20147775-20147855 3.27e-01 80 chrX:2838759-2838839 4.92e-02 80 chrIV:8380440-8380520 6.58e-01 80 chrV:16174293-16174373 5.41e-04 32_[+1(3.14e-05)]_40 chrI:3710779-3710859 2.22e-03 36_[+1(3.14e-05)]_36 chrI:6283256-6283336 5.74e-02 80 chrIII:4506329-4506409 3.85e-01 80 chrIII:4668343-4668423 9.77e-02 80 chrI:4593590-4593670 5.47e-01 80 chrIII:11949375-11949455 2.23e-02 26_[+3(7.87e-06)]_46 chrI:7354324-7354404 3.17e-02 55_[+1(6.32e-05)]_17 chrIV:3988774-3988854 2.04e-03 1_[+5(6.36e-05)]_22_[+5(6.36e-05)]_\ 41 chrI:8218473-8218553 4.11e-05 7_[+5(1.94e-05)]_45_[+2(1.99e-05)]_\ 12 chrV:8386298-8386378 3.74e-01 80 chrX:4480933-4481013 5.01e-03 27_[+1(3.14e-05)]_45 chrIII:3475620-3475700 2.09e-03 80 chrV:11975411-11975491 4.14e-01 80 chrIII:10134624-10134704 1.36e-03 45_[+5(1.94e-05)]_27 chrII:8625263-8625343 1.29e-02 19_[+5(1.94e-05)]_53 chrII:1949301-1949381 3.66e-03 80 chrX:7578510-7578590 4.75e-04 8_[+4(3.86e-05)]_64 chrI:4158237-4158317 6.03e-02 3_[+2(1.99e-05)]_69 chrIII:8400606-8400686 7.80e-04 31_[+5(1.94e-05)]_41 chrIV:17171938-17172018 2.82e-01 80 chrII:5323979-5324059 9.43e-06 23_[+5(1.94e-05)]_38_[+2(3.21e-05)]_\ 3 chrII:14959422-14959502 4.46e-02 80 chrIV:17342323-17342403 3.70e-01 80 chrV:4630487-4630567 7.82e-03 80 chrX:3031672-3031752 5.76e-02 80 chrV:11647967-11648047 7.90e-03 45_[+1(6.32e-05)]_27 chrII:915392-915472 8.07e-03 80 chrII:4770018-4770098 3.89e-05 30_[+4(7.74e-05)]_18_[+5(1.94e-05)]_\ 16 chrV:13212706-13212786 4.80e-03 1_[+1(3.14e-05)]_71 chrII:1995888-1995968 3.93e-02 58_[+1(6.32e-05)]_14 chrX:3235545-3235625 4.77e-02 60_[+5(1.94e-05)]_12 chrV:6489102-6489182 9.70e-01 80 chrII:8384517-8384597 1.94e-01 80 chrIII:13059488-13059568 1.96e-02 29_[+2(8.39e-05)]_43 chrI:1815689-1815769 6.43e-01 80 chrIII:1698994-1699074 4.35e-03 58_[+1(6.32e-05)]_14 chrIII:2050001-2050081 3.77e-03 80 chrII:1728409-1728489 4.98e-04 4_[+1(7.48e-05)]_54_[+1(3.14e-05)]_\ 6 chrV:13268207-13268287 3.74e-02 21_[+5(6.36e-05)]_51 chrX:7576111-7576191 4.30e-03 72_[+2(1.99e-05)] chrII:5585988-5586068 8.98e-02 80 chrI:6081570-6081650 4.99e-02 80 chrIII:1602805-1602885 2.39e-03 39_[+2(1.99e-05)]_33 chrV:18462499-18462579 3.73e-03 14_[+5(6.36e-05)]_58 chrIII:12317730-12317810 3.66e-01 80 chrX:17140797-17140877 1.31e-03 80 chrII:13468163-13468243 6.33e-04 22_[+2(1.99e-05)]_50 chrI:5376425-5376505 2.08e-02 80 chrX:17471829-17471909 1.94e-03 26_[+1(3.14e-05)]_46 chrV:15298807-15298887 5.65e-03 54_[+1(3.14e-05)]_18 chrII:943915-943995 4.99e-03 56_[+1(3.14e-05)]_16 chrV:332770-332850 2.09e-02 80 chrV:5820037-5820117 1.96e-03 7_[+4(1.17e-05)]_65 chrV:19051512-19051592 4.62e-02 80 chrIII:2586359-2586439 2.40e-01 80 chrX:15276431-15276511 1.21e-01 21_[+2(1.99e-05)]_51 chrV:5027832-5027912 1.40e-03 80 chrV:13730937-13731017 7.58e-02 80 chrIII:8748785-8748865 3.79e-02 80 chrII:5553676-5553756 5.57e-03 9_[+5(6.36e-05)]_63 chrI:1836268-1836348 4.03e-03 1_[+5(8.30e-05)]_11_[+1(3.14e-05)]_\ 52 chrIV:13327198-13327278 1.31e-01 80 chrX:3576416-3576496 1.19e-02 62_[+5(6.36e-05)]_10 chrI:986794-986874 2.34e-02 80 chrII:4552265-4552345 8.10e-01 80 chrV:8019932-8020012 1.24e-01 80 chrII:7273727-7273807 9.89e-03 53_[+1(3.14e-05)]_19 chrII:3786673-3786753 5.29e-03 8_[+5(6.36e-05)]_11_[+5(6.36e-05)]_\ 45 chrV:8795636-8795716 4.45e-01 80 chrV:9924656-9924736 3.17e-01 80 chrIII:154342-154422 2.25e-02 80 chrII:9157273-9157353 1.17e-01 80 chrII:6283331-6283411 6.27e-01 80 chrIII:9474707-9474787 2.11e-02 80 chrV:11080761-11080841 5.81e-02 80 chrIII:5981338-5981418 8.98e-02 80 chrI:6418817-6418897 3.61e-01 80 chrI:10104949-10105029 9.21e-02 1_[+2(1.99e-05)]_71 chrV:18246254-18246334 5.37e-02 53_[+5(6.36e-05)]_19 chrI:14051891-14051971 1.73e-03 37_[+1(3.14e-05)]_35 chrII:5751513-5751593 4.32e-02 80 chrV:5067488-5067568 2.63e-01 80 chrIV:8450691-8450771 1.42e-01 80 chrIII:1392918-1392998 2.21e-01 80 chrII:5912307-5912387 1.41e-03 32_[+2(8.39e-05)]_40 chrII:10594981-10595061 1.08e-01 80 chrV:8768639-8768719 2.51e-01 80 chrV:10399419-10399499 1.16e-01 80 chrIII:8479452-8479532 2.77e-03 80 chrIV:15689244-15689324 1.54e-02 31_[+1(3.14e-05)]_5_[+1(3.14e-05)]_\ 28 chrV:11648558-11648638 9.22e-01 80 chrX:8492796-8492876 7.26e-02 80 chrV:9373630-9373710 8.56e-02 80 chrII:4674363-4674443 1.04e-01 80 chrIV:3900012-3900092 2.73e-03 7_[+1(3.14e-05)]_65 chrIV:8032315-8032395 4.29e-02 12_[+1(6.32e-05)]_60 chrIV:15393358-15393438 4.92e-03 5_[+1(6.32e-05)]_67 chrIV:3158323-3158403 2.85e-02 80 chrIII:3887799-3887879 1.19e-03 80 chrV:13716686-13716766 3.74e-02 55_[+2(5.17e-05)]_17 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n02.farnam.hpc.yale.internal ********************************************************************************