******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/worm/fasta/RankLinear2.0_40/pop-1.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrM:5420-5500 1.0000 80 chrM:7608-7688 1.0000 80 chrI:933476-933556 1.0000 80 chrI:2803308-2803388 1.0000 80 chrM:10807-10887 1.0000 80 chrI:2829206-2829286 1.0000 80 chrM:10194-10274 1.0000 80 chrX:5056378-5056458 1.0000 80 chrM:8264-8344 1.0000 80 chrM:3012-3092 1.0000 80 chrIII:3499995-3500075 1.0000 80 chrM:7278-7358 1.0000 80 chrV:18720248-18720328 1.0000 80 chrIII:931564-931644 1.0000 80 chrIV:8334360-8334440 1.0000 80 chrI:2826958-2827038 1.0000 80 chrM:1259-1339 1.0000 80 chrX:12692139-12692219 1.0000 80 chrV:12510126-12510206 1.0000 80 chrM:3989-4069 1.0000 80 chrV:1244202-1244282 1.0000 80 chrM:4299-4379 1.0000 80 chrM:2161-2241 1.0000 80 chrM:6103-6183 1.0000 80 chrX:8156136-8156216 1.0000 80 chrI:7711734-7711814 1.0000 80 chrM:9177-9257 1.0000 80 chrI:11609209-11609289 1.0000 80 chrIV:9316196-9316276 1.0000 80 chrM:4619-4699 1.0000 80 chrV:5284523-5284603 1.0000 80 chrV:7231017-7231097 1.0000 80 chrIII:3664371-3664451 1.0000 80 chrM:12417-12497 1.0000 80 chrIII:1824665-1824745 1.0000 80 chrV:14876371-14876451 1.0000 80 chrX:9296760-9296840 1.0000 80 chrI:1575701-1575781 1.0000 80 chrII:6898218-6898298 1.0000 80 chrII:7001562-7001642 1.0000 80 chrX:12693243-12693323 1.0000 80 chrI:2821527-2821607 1.0000 80 chrM:5633-5713 1.0000 80 chrX:14115641-14115721 1.0000 80 chrII:3597139-3597219 1.0000 80 chrIII:9104262-9104342 1.0000 80 chrII:9258342-9258422 1.0000 80 chrIV:7488640-7488720 1.0000 80 chrIV:16399213-16399293 1.0000 80 chrIV:9048255-9048335 1.0000 80 chrX:8646456-8646536 1.0000 80 chrV:4510494-4510574 1.0000 80 chrX:14490097-14490177 1.0000 80 chrIV:9269086-9269166 1.0000 80 chrIV:11071029-11071109 1.0000 80 chrX:16928243-16928323 1.0000 80 chrIII:12613557-12613637 1.0000 80 chrIV:16388389-16388469 1.0000 80 chrII:3999714-3999794 1.0000 80 chrII:7708719-7708799 1.0000 80 chrII:10990837-10990917 1.0000 80 chrI:3873959-3874039 1.0000 80 chrI:7715740-7715820 1.0000 80 chrX:4964445-4964525 1.0000 80 chrIV:16400920-16401000 1.0000 80 chrI:4032659-4032739 1.0000 80 chrX:1120403-1120483 1.0000 80 chrIII:3175138-3175218 1.0000 80 chrX:8818113-8818193 1.0000 80 chrII:4942519-4942599 1.0000 80 chrX:5319377-5319457 1.0000 80 chrIII:8106627-8106707 1.0000 80 chrX:9225485-9225565 1.0000 80 chrV:14855770-14855850 1.0000 80 chrIII:13721376-13721456 1.0000 80 chrX:10821366-10821446 1.0000 80 chrV:18712277-18712357 1.0000 80 chrX:8386205-8386285 1.0000 80 chrI:7472339-7472419 1.0000 80 chrX:5407429-5407509 1.0000 80 chrI:6136558-6136638 1.0000 80 chrI:1651425-1651505 1.0000 80 chrII:3521452-3521532 1.0000 80 chrV:12780433-12780513 1.0000 80 chrIII:3916810-3916890 1.0000 80 chrX:12890290-12890370 1.0000 80 chrV:13396518-13396598 1.0000 80 chrV:10717162-10717242 1.0000 80 chrII:10169386-10169466 1.0000 80 chrX:5707996-5708076 1.0000 80 chrI:14606039-14606119 1.0000 80 chrM:9383-9463 1.0000 80 chrIV:13029951-13030031 1.0000 80 chrI:11670290-11670370 1.0000 80 chrX:1858822-1858902 1.0000 80 chrV:11844899-11844979 1.0000 80 chrII:7811023-7811103 1.0000 80 chrII:5772823-5772903 1.0000 80 chrII:8547125-8547205 1.0000 80 chrIV:16398340-16398420 1.0000 80 chrI:6532057-6532137 1.0000 80 chrIII:4568703-4568783 1.0000 80 chrIV:9191332-9191412 1.0000 80 chrIV:3524796-3524876 1.0000 80 chrIV:11026159-11026239 1.0000 80 chrI:9268922-9269002 1.0000 80 chrV:11075906-11075986 1.0000 80 chrII:15263291-15263371 1.0000 80 chrIII:8650354-8650434 1.0000 80 chrX:1880872-1880952 1.0000 80 chrIV:15561523-15561603 1.0000 80 chrI:14721586-14721666 1.0000 80 chrIII:10432331-10432411 1.0000 80 chrIII:10624798-10624878 1.0000 80 chrX:12458155-12458235 1.0000 80 chrI:4176037-4176117 1.0000 80 chrIV:1388211-1388291 1.0000 80 chrV:15551823-15551903 1.0000 80 chrII:5293397-5293477 1.0000 80 chrX:3348006-3348086 1.0000 80 chrIV:9477738-9477818 1.0000 80 chrIII:4171152-4171232 1.0000 80 chrI:2935738-2935818 1.0000 80 chrX:2885448-2885528 1.0000 80 chrII:9566214-9566294 1.0000 80 chrIII:1122399-1122479 1.0000 80 chrX:13653747-13653827 1.0000 80 chrV:4731531-4731611 1.0000 80 chrI:9988922-9989002 1.0000 80 chrV:19126041-19126121 1.0000 80 chrX:5686319-5686399 1.0000 80 chrII:6248619-6248699 1.0000 80 chrII:3567733-3567813 1.0000 80 chrII:4701515-4701595 1.0000 80 chrIV:842772-842852 1.0000 80 chrIII:535347-535427 1.0000 80 chrI:11095799-11095879 1.0000 80 chrX:7951709-7951789 1.0000 80 chrV:14697068-14697148 1.0000 80 chrIV:143951-144031 1.0000 80 chrX:9637838-9637918 1.0000 80 chrIV:2805647-2805727 1.0000 80 chrIII:1601627-1601707 1.0000 80 chrX:6220064-6220144 1.0000 80 chrV:11113332-11113412 1.0000 80 chrII:11635237-11635317 1.0000 80 chrX:13511954-13512034 1.0000 80 chrX:14804857-14804937 1.0000 80 chrV:11239376-11239456 1.0000 80 chrII:10548979-10549059 1.0000 80 chrI:1958523-1958603 1.0000 80 chrIII:7030520-7030600 1.0000 80 chrX:6903115-6903195 1.0000 80 chrX:12367692-12367772 1.0000 80 chrV:13962199-13962279 1.0000 80 chrX:9337950-9338030 1.0000 80 chrIII:6158750-6158830 1.0000 80 chrX:16604671-16604751 1.0000 80 chrI:11505528-11505608 1.0000 80 chrV:20694135-20694215 1.0000 80 chrIII:11371395-11371475 1.0000 80 chrX:9932523-9932603 1.0000 80 chrIII:9861673-9861753 1.0000 80 chrX:5812263-5812343 1.0000 80 chrX:11935146-11935226 1.0000 80 chrX:1837848-1837928 1.0000 80 chrX:10963816-10963896 1.0000 80 chrI:11517284-11517364 1.0000 80 chrII:11959356-11959436 1.0000 80 chrI:9605729-9605809 1.0000 80 chrX:593398-593478 1.0000 80 chrX:6593558-6593638 1.0000 80 chrV:1474588-1474668 1.0000 80 chrIII:5555092-5555172 1.0000 80 chrIII:10707201-10707281 1.0000 80 chrIV:16776111-16776191 1.0000 80 chrIII:4470905-4470985 1.0000 80 chrII:4238058-4238138 1.0000 80 chrV:9503532-9503612 1.0000 80 chrIV:16382257-16382337 1.0000 80 chrII:9774820-9774900 1.0000 80 chrIII:6453817-6453897 1.0000 80 chrX:12563760-12563840 1.0000 80 chrX:6371353-6371433 1.0000 80 chrX:2536582-2536662 1.0000 80 chrV:11610631-11610711 1.0000 80 chrII:10388190-10388270 1.0000 80 chrIII:5295005-5295085 1.0000 80 chrI:5176376-5176456 1.0000 80 chrX:15742019-15742099 1.0000 80 chrI:10593162-10593242 1.0000 80 chrX:13121284-13121364 1.0000 80 chrIV:17087574-17087654 1.0000 80 chrX:12661176-12661256 1.0000 80 chrII:8107270-8107350 1.0000 80 chrI:2514314-2514394 1.0000 80 chrX:14312578-14312658 1.0000 80 chrIV:8252998-8253078 1.0000 80 chrIII:8874234-8874314 1.0000 80 chrX:1379564-1379644 1.0000 80 chrX:15297543-15297623 1.0000 80 chrI:14737436-14737516 1.0000 80 chrV:6267580-6267660 1.0000 80 chrX:6292307-6292387 1.0000 80 chrII:5781988-5782068 1.0000 80 chrIII:6887746-6887826 1.0000 80 chrI:13297685-13297765 1.0000 80 chrIV:6556759-6556839 1.0000 80 chrII:6853178-6853258 1.0000 80 chrX:13264759-13264839 1.0000 80 chrII:14143918-14143998 1.0000 80 chrII:5292358-5292438 1.0000 80 chrX:3970163-3970243 1.0000 80 chrIV:14825071-14825151 1.0000 80 chrIII:4378794-4378874 1.0000 80 chrX:9999851-9999931 1.0000 80 chrIV:322623-322703 1.0000 80 chrIII:8678543-8678623 1.0000 80 chrIII:5602189-5602269 1.0000 80 chrI:9267124-9267204 1.0000 80 chrX:10132641-10132721 1.0000 80 chrIII:8937706-8937786 1.0000 80 chrII:12494708-12494788 1.0000 80 chrX:11757859-11757939 1.0000 80 chrIV:11549848-11549928 1.0000 80 chrIII:5211296-5211376 1.0000 80 chrI:488362-488442 1.0000 80 chrII:8075452-8075532 1.0000 80 chrIII:12874847-12874927 1.0000 80 chrIII:10461283-10461363 1.0000 80 chrII:5032736-5032816 1.0000 80 chrX:9467675-9467755 1.0000 80 chrV:13003486-13003566 1.0000 80 chrX:3697726-3697806 1.0000 80 chrIV:14838323-14838403 1.0000 80 chrX:13527435-13527515 1.0000 80 chrI:14113227-14113307 1.0000 80 chrI:6105745-6105825 1.0000 80 chrX:16590948-16591028 1.0000 80 chrI:2410098-2410178 1.0000 80 chrX:16147856-16147936 1.0000 80 chrIV:8375530-8375610 1.0000 80 chrIV:14034192-14034272 1.0000 80 chrV:19643168-19643248 1.0000 80 chrX:12106153-12106233 1.0000 80 chrIII:835893-835973 1.0000 80 chrII:5105243-5105323 1.0000 80 chrX:2613255-2613335 1.0000 80 chrV:6888960-6889040 1.0000 80 chrIII:1923600-1923680 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/worm/inference_raw/MEME/RankLinear2.0_40_pop-1/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/worm/fasta/RankLinear2.0_40/pop-1.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.254 C 0.246 G 0.254 T 0.247 Background letter frequencies (from file dataset with add-one prior applied): A 0.254 C 0.246 G 0.254 T 0.247 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF TYGAACCC MEME-1 width = 8 sites = 32 llr = 294 E-value = 1.4e-011 ******************************************************************************** -------------------------------------------------------------------------------- Motif TYGAACCC MEME-1 Description -------------------------------------------------------------------------------- Simplified A :::a9::2 pos.-specific C :6:::aa8 probability G ::a:1::: matrix T a4::1::: bits 2.0 * ** * 1.8 * ** ** 1.6 * ** ** 1.4 * ** ** Relative 1.2 * ***** Entropy 1.0 ******** (13.3 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TCGAACCC consensus T A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TYGAACCC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:12106153-12106233 9 1.48e-05 TGCGGGGC TCGAACCC GCGACAACCA chrV:19643168-19643248 23 1.48e-05 TGGGTGGGAA TCGAACCC GGAAGCTGTG chrIV:14838323-14838403 12 1.48e-05 GGGGACGGGT TCGAACCC AGGACACTAT chrIV:11549848-11549928 27 1.48e-05 GCCACGAGAA TCGAACCC GTGATGCATA chrI:13297685-13297765 3 1.48e-05 GC TCGAACCC GCGACAACCA chrX:1379564-1379644 54 1.48e-05 TCGGGGGGAA TCGAACCC CCGTCGAATG chrX:6903115-6903195 14 1.48e-05 AGAGTGGGAT TCGAACCC ACGCCCCCGA chrII:3567733-3567813 46 1.48e-05 AATGCGGGGC TCGAACCC GCGACAACCA chrIV:1388211-1388291 20 1.48e-05 ATGCCGGGAA TCGAACCC GGGCCGCGTG chrIII:8650354-8650434 42 1.48e-05 GAACCGGGAA TCGAACCC GGGACCTCTC chrX:16928243-16928323 43 1.48e-05 cgaccgggaa tcgaaccc gggccgcccg chrV:13003486-13003566 38 2.97e-05 GTATGGGGAA TTGAACCC CAGCCCTCTC chrX:9467675-9467755 69 2.97e-05 GAACCGGGGA TTGAACCC GGGA chrIV:322623-322703 24 2.97e-05 cggccgggaa ttgaaccc gggtctcgca chrX:16604671-16604751 64 2.97e-05 CGGCCGGGAA TTGAACCC GGGTCTCGC chrX:13511954-13512034 31 2.97e-05 GAACCGGGGA TTGAACCC GGGACCTCTC chrX:9637838-9637918 29 2.97e-05 GTATGGGGAA TTGAACCC CAGCCCTCTC chrX:12458155-12458235 36 2.97e-05 GTATGGGGAA TTGAACCC CAGCCCTCTC chrX:12890290-12890370 10 2.97e-05 CACGGGGAA TTGAACCC CGGACTTCTC chrI:6105745-6105825 17 4.50e-05 CGGCTGGGGG TCGAACCA GCGACCCGCT chrIII:7030520-7030600 52 4.50e-05 CATGCTGGAA TCGAACCA GCGACCTTCT chrII:3521452-3521532 50 4.50e-05 GCGGCTGGAA TCGAACCA GCGTCGCCAC chrIII:11371395-11371475 30 6.04e-05 TTCATTGGTT TTGAACCA GTGACCTTCA chrV:20694135-20694215 1 6.04e-05 . TTGAACCA GGGACCTCTC chrV:14855770-14855850 32 6.04e-05 GCACCCGGAG TTGAACCA GGGACCTCTC chrX:8818113-8818193 2 6.04e-05 G TTGAACCA GGGACCTCTC chrII:11959356-11959436 73 7.48e-05 GGCCGCCGGT TCGATCCC chrI:9268922-9269002 21 7.48e-05 GAGCCGGGGA TCGATCCC GGGACCTCTC chrX:8386205-8386285 53 8.96e-05 GATTGCAGGT TCGAGCCC TGCCTGGGTC chrI:1575701-1575781 73 8.96e-05 GATTGCAGGT TCGAGCCC chrX:6220064-6220144 21 1.34e-04 ACGGCAGGAT TCGAACCT ACAATCTTCT chrI:11095799-11095879 16 1.49e-04 CACGTAGAGG TCGAATCC GAGAGACCGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TYGAACCC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:12106153-12106233 1.5e-05 8_[+1]_64 chrV:19643168-19643248 1.5e-05 22_[+1]_50 chrIV:14838323-14838403 1.5e-05 11_[+1]_61 chrIV:11549848-11549928 1.5e-05 26_[+1]_46 chrI:13297685-13297765 1.5e-05 2_[+1]_70 chrX:1379564-1379644 1.5e-05 53_[+1]_19 chrX:6903115-6903195 1.5e-05 13_[+1]_59 chrII:3567733-3567813 1.5e-05 45_[+1]_27 chrIV:1388211-1388291 1.5e-05 19_[+1]_53 chrIII:8650354-8650434 1.5e-05 41_[+1]_31 chrX:16928243-16928323 1.5e-05 42_[+1]_30 chrV:13003486-13003566 3e-05 37_[+1]_35 chrX:9467675-9467755 3e-05 68_[+1]_4 chrIV:322623-322703 3e-05 23_[+1]_49 chrX:16604671-16604751 3e-05 63_[+1]_9 chrX:13511954-13512034 3e-05 30_[+1]_42 chrX:9637838-9637918 3e-05 28_[+1]_44 chrX:12458155-12458235 3e-05 35_[+1]_37 chrX:12890290-12890370 3e-05 9_[+1]_63 chrI:6105745-6105825 4.5e-05 16_[+1]_56 chrIII:7030520-7030600 4.5e-05 51_[+1]_21 chrII:3521452-3521532 4.5e-05 49_[+1]_23 chrIII:11371395-11371475 6e-05 29_[+1]_43 chrV:20694135-20694215 6e-05 [+1]_72 chrV:14855770-14855850 6e-05 31_[+1]_41 chrX:8818113-8818193 6e-05 1_[+1]_71 chrII:11959356-11959436 7.5e-05 72_[+1] chrI:9268922-9269002 7.5e-05 20_[+1]_52 chrX:8386205-8386285 9e-05 52_[+1]_20 chrI:1575701-1575781 9e-05 72_[+1] chrX:6220064-6220144 0.00013 20_[+1]_52 chrI:11095799-11095879 0.00015 15_[+1]_57 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TYGAACCC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TYGAACCC width=8 seqs=32 chrX:12106153-12106233 ( 9) TCGAACCC 1 chrV:19643168-19643248 ( 23) TCGAACCC 1 chrIV:14838323-14838403 ( 12) TCGAACCC 1 chrIV:11549848-11549928 ( 27) TCGAACCC 1 chrI:13297685-13297765 ( 3) TCGAACCC 1 chrX:1379564-1379644 ( 54) TCGAACCC 1 chrX:6903115-6903195 ( 14) TCGAACCC 1 chrII:3567733-3567813 ( 46) TCGAACCC 1 chrIV:1388211-1388291 ( 20) TCGAACCC 1 chrIII:8650354-8650434 ( 42) TCGAACCC 1 chrX:16928243-16928323 ( 43) TCGAACCC 1 chrV:13003486-13003566 ( 38) TTGAACCC 1 chrX:9467675-9467755 ( 69) TTGAACCC 1 chrIV:322623-322703 ( 24) TTGAACCC 1 chrX:16604671-16604751 ( 64) TTGAACCC 1 chrX:13511954-13512034 ( 31) TTGAACCC 1 chrX:9637838-9637918 ( 29) TTGAACCC 1 chrX:12458155-12458235 ( 36) TTGAACCC 1 chrX:12890290-12890370 ( 10) TTGAACCC 1 chrI:6105745-6105825 ( 17) TCGAACCA 1 chrIII:7030520-7030600 ( 52) TCGAACCA 1 chrII:3521452-3521532 ( 50) TCGAACCA 1 chrIII:11371395-11371475 ( 30) TTGAACCA 1 chrV:20694135-20694215 ( 1) TTGAACCA 1 chrV:14855770-14855850 ( 32) TTGAACCA 1 chrX:8818113-8818193 ( 2) TTGAACCA 1 chrII:11959356-11959436 ( 73) TCGATCCC 1 chrI:9268922-9269002 ( 21) TCGATCCC 1 chrX:8386205-8386285 ( 53) TCGAGCCC 1 chrI:1575701-1575781 ( 73) TCGAGCCC 1 chrX:6220064-6220144 ( 21) TCGAACCT 1 chrI:11095799-11095879 ( 16) TCGAATCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TYGAACCC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.15308 E= 1.4e-011 -1164 -1164 -1164 202 -1164 135 -1164 60 -1164 -1164 198 -1164 198 -1164 -1164 -1164 179 -1164 -202 -198 -1164 198 -1164 -298 -1164 202 -1164 -1164 -21 161 -1164 -298 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TYGAACCC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 32 E= 1.4e-011 0.000000 0.000000 0.000000 1.000000 0.000000 0.625000 0.000000 0.375000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.875000 0.000000 0.062500 0.062500 0.000000 0.968750 0.000000 0.031250 0.000000 1.000000 0.000000 0.000000 0.218750 0.750000 0.000000 0.031250 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TYGAACCC MEME-1 regular expression -------------------------------------------------------------------------------- T[CT]GAACC[CA] -------------------------------------------------------------------------------- Time 6.66 secs. ******************************************************************************** ******************************************************************************** MOTIF TAGCTCAG MEME-2 width = 8 sites = 16 llr = 166 E-value = 1.4e-003 ******************************************************************************** -------------------------------------------------------------------------------- Motif TAGCTCAG MEME-2 Description -------------------------------------------------------------------------------- Simplified A :a::::9: pos.-specific C :::a:a1: probability G ::a:2::a matrix T a:::8::: bits 2.0 **** * * 1.8 **** * * 1.6 **** *** 1.4 **** *** Relative 1.2 ******** Entropy 1.0 ******** (15.0 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TAGCTCAG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAGCTCAG MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrII:5032736-5032816 41 1.54e-05 ATGGCCGCCA TAGCTCAG TCGGTTAGAG chrII:12494708-12494788 40 1.54e-05 TCGGCCGCCA TAGCTCAG TCGGTTAGAG chrX:12563760-12563840 35 1.54e-05 TGTGCCCTTA TAGCTCAG TGGTAGAGCG chrV:9503532-9503612 37 1.54e-05 GTCGGGGGTA TAGCTCAG GGGTAGAGCG chrX:6593558-6593638 45 1.54e-05 ACTGCCTCGA TAGCTCAG TTGGGAGAGC chrI:11505528-11505608 30 1.54e-05 ATCGGGGGTA TAGCTCAG TGGCAGAGCA chrX:14804857-14804937 27 1.54e-05 CACGGGGGTA TAGCTCAG TGGCAGAGCA chrIII:535347-535427 42 1.54e-05 GTGCCGTCGA TAGCTCAG TTGGTAGAGC chrV:19126041-19126121 10 1.54e-05 CTGCCTCGA TAGCTCAG TTGGGAGAGC chrIV:16398340-16398420 51 1.54e-05 TGCGGGGGTA TAGCTCAG TGGTAGAGCG chrI:6136558-6136638 46 1.54e-05 GCCGCCCGGT TAGCTCAG TCGGTAGAGC chrII:7001562-7001642 72 1.54e-05 GTTACCTGTG TAGCTCAG G chrX:3697726-3697806 37 3.12e-05 CGTGCTTCCG TAGCGCAG TAGGCAGCGC chrIII:1122399-1122479 42 3.12e-05 TGTTGCCGTT TAGCGCAG GCGGGAGTGG chrIII:8106627-8106707 33 3.12e-05 GCCGCTTCCG TAGCGCAG TAGGCAGCGC chrII:4238058-4238138 63 4.61e-05 CGTTGCAACT TAGCTCCG CCCACCCTTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAGCTCAG MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:5032736-5032816 1.5e-05 40_[+2]_32 chrII:12494708-12494788 1.5e-05 39_[+2]_33 chrX:12563760-12563840 1.5e-05 34_[+2]_38 chrV:9503532-9503612 1.5e-05 36_[+2]_36 chrX:6593558-6593638 1.5e-05 44_[+2]_28 chrI:11505528-11505608 1.5e-05 29_[+2]_43 chrX:14804857-14804937 1.5e-05 26_[+2]_46 chrIII:535347-535427 1.5e-05 41_[+2]_31 chrV:19126041-19126121 1.5e-05 9_[+2]_63 chrIV:16398340-16398420 1.5e-05 50_[+2]_22 chrI:6136558-6136638 1.5e-05 45_[+2]_27 chrII:7001562-7001642 1.5e-05 71_[+2]_1 chrX:3697726-3697806 3.1e-05 36_[+2]_36 chrIII:1122399-1122479 3.1e-05 41_[+2]_31 chrIII:8106627-8106707 3.1e-05 32_[+2]_40 chrII:4238058-4238138 4.6e-05 62_[+2]_10 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAGCTCAG MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TAGCTCAG width=8 seqs=16 chrII:5032736-5032816 ( 41) TAGCTCAG 1 chrII:12494708-12494788 ( 40) TAGCTCAG 1 chrX:12563760-12563840 ( 35) TAGCTCAG 1 chrV:9503532-9503612 ( 37) TAGCTCAG 1 chrX:6593558-6593638 ( 45) TAGCTCAG 1 chrI:11505528-11505608 ( 30) TAGCTCAG 1 chrX:14804857-14804937 ( 27) TAGCTCAG 1 chrIII:535347-535427 ( 42) TAGCTCAG 1 chrV:19126041-19126121 ( 10) TAGCTCAG 1 chrIV:16398340-16398420 ( 51) TAGCTCAG 1 chrI:6136558-6136638 ( 46) TAGCTCAG 1 chrII:7001562-7001642 ( 72) TAGCTCAG 1 chrX:3697726-3697806 ( 37) TAGCGCAG 1 chrIII:1122399-1122479 ( 42) TAGCGCAG 1 chrIII:8106627-8106707 ( 33) TAGCGCAG 1 chrII:4238058-4238138 ( 63) TAGCTCCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAGCTCAG MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.1543 E= 1.4e-003 -1064 -1064 -1064 202 198 -1064 -1064 -1064 -1064 -1064 198 -1064 -1064 202 -1064 -1064 -1064 -1064 -44 172 -1064 202 -1064 -1064 189 -197 -1064 -1064 -1064 -1064 198 -1064 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAGCTCAG MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 16 E= 1.4e-003 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.187500 0.812500 0.000000 1.000000 0.000000 0.000000 0.937500 0.062500 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAGCTCAG MEME-2 regular expression -------------------------------------------------------------------------------- TAGCTCAG -------------------------------------------------------------------------------- Time 10.31 secs. ******************************************************************************** ******************************************************************************** MOTIF TGCAAAAA MEME-3 width = 8 sites = 28 llr = 242 E-value = 7.5e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGCAAAAA MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::29aa9a pos.-specific C :18:::1: probability G 18:1::1: matrix T 91:::::: bits 2.0 ** 1.8 ** * 1.6 * ** * 1.4 * **** * Relative 1.2 ******** Entropy 1.0 ******** (12.5 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TGCAAAAA consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCAAAAA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrI:14113227-14113307 43 1.63e-05 GTGCGCCACT TGCAAAAA GGGGCGGAGT chrIII:5295005-5295085 45 1.63e-05 GCCACGCTGC TGCAAAAA CAACACCCTC chrV:11610631-11610711 18 1.63e-05 GCGCTCATCT TGCAAAAA ATGTGCGCGG chrV:13962199-13962279 19 1.63e-05 GCGCGGCAAC TGCAAAAA AGGGCGGAGC chrV:4731531-4731611 60 1.63e-05 GCGGGGACAT TGCAAAAA CGCGCGCGCG chrX:12458155-12458235 8 1.63e-05 TTAATAA TGCAAAAA ACTTATGGAG chrV:11075906-11075986 56 1.63e-05 TGAGAAACAG TGCAAAAA ATCAAGAGAA chrII:3521452-3521532 22 1.63e-05 TATTCGCTTC TGCAAAAA GGAGTTGCCT chrV:14876371-14876451 6 1.63e-05 GAATT TGCAAAAA AGAATGCCCC chrX:9467675-9467755 23 3.32e-05 TTTCTTTGAA TGAAAAAA TTCTTCGAGA chrIV:14825071-14825151 51 3.32e-05 TTTTTCGATG TGAAAAAA ATCCCTCTAC chrII:10388190-10388270 12 3.32e-05 GTAAAATGTG TGAAAAAA GTGCGCGGCG chrII:4238058-4238138 34 4.95e-05 GCGGCACACT TGCGAAAA TGCGTGCGGC chrIII:3499995-3500075 65 4.95e-05 AAAGAGGATC TGCGAAAA TGGGATCT chrIV:2805647-2805727 68 6.53e-05 TTTTGCAAGA TCCAAAAA AATTA chrV:14855770-14855850 3 6.53e-05 AT TCCAAAAA GTATTTAGGG chrM:4299-4379 66 6.53e-05 TTGGTTACGG TCCAAAAA GATGCAC chrIII:6887746-6887826 69 1.13e-04 CGTGCTGTGA TGCAAAGA CTTG chrIII:7030520-7030600 22 1.13e-04 CTAAGATTTC TTCAAAAA AATTCGGTGC chrIII:4171152-4171232 48 1.13e-04 GTGCCAGGGT TGCAAAGA ACGCTCCGCC chrIII:3916810-3916890 12 1.13e-04 GCGGCGACTT TGCAAACA CTGCGCGCGC chrV:18712277-18712357 22 1.13e-04 CCGCAAAATA TTCAAAAA CAGATAAACG chrII:7708719-7708799 20 1.13e-04 CGGGGCTATC TGCAAACA ATGCAATGCG chrX:16604671-16604751 37 1.30e-04 AAAGTTATTA GGCAAAAA GATTCTCCCC chrIII:12613557-12613637 4 1.30e-04 AAA GGCAAAAA AATTTCAAAT chrI:3873959-3874039 17 1.46e-04 cgccgcacat tgcAAAAC TGCAAATGGG chrII:5105243-5105323 65 1.63e-04 AGAGAACCTG TGAGAAAA AAGGGTGT chrI:1958523-1958603 4 1.63e-04 AAA TGAGAAAA ACGGGAATTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCAAAAA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:14113227-14113307 1.6e-05 42_[+3]_30 chrIII:5295005-5295085 1.6e-05 44_[+3]_28 chrV:11610631-11610711 1.6e-05 17_[+3]_55 chrV:13962199-13962279 1.6e-05 18_[+3]_54 chrV:4731531-4731611 1.6e-05 59_[+3]_13 chrX:12458155-12458235 1.6e-05 7_[+3]_65 chrV:11075906-11075986 1.6e-05 55_[+3]_17 chrII:3521452-3521532 1.6e-05 21_[+3]_51 chrV:14876371-14876451 1.6e-05 5_[+3]_67 chrX:9467675-9467755 3.3e-05 22_[+3]_50 chrIV:14825071-14825151 3.3e-05 50_[+3]_22 chrII:10388190-10388270 3.3e-05 11_[+3]_61 chrII:4238058-4238138 4.9e-05 33_[+3]_39 chrIII:3499995-3500075 4.9e-05 64_[+3]_8 chrIV:2805647-2805727 6.5e-05 67_[+3]_5 chrV:14855770-14855850 6.5e-05 2_[+3]_70 chrM:4299-4379 6.5e-05 65_[+3]_7 chrIII:6887746-6887826 0.00011 68_[+3]_4 chrIII:7030520-7030600 0.00011 21_[+3]_51 chrIII:4171152-4171232 0.00011 47_[+3]_25 chrIII:3916810-3916890 0.00011 11_[+3]_61 chrV:18712277-18712357 0.00011 21_[+3]_51 chrII:7708719-7708799 0.00011 19_[+3]_53 chrX:16604671-16604751 0.00013 36_[+3]_36 chrIII:12613557-12613637 0.00013 3_[+3]_69 chrI:3873959-3874039 0.00015 16_[+3]_56 chrII:5105243-5105323 0.00016 64_[+3]_8 chrI:1958523-1958603 0.00016 3_[+3]_69 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCAAAAA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGCAAAAA width=8 seqs=28 chrI:14113227-14113307 ( 43) TGCAAAAA 1 chrIII:5295005-5295085 ( 45) TGCAAAAA 1 chrV:11610631-11610711 ( 18) TGCAAAAA 1 chrV:13962199-13962279 ( 19) TGCAAAAA 1 chrV:4731531-4731611 ( 60) TGCAAAAA 1 chrX:12458155-12458235 ( 8) TGCAAAAA 1 chrV:11075906-11075986 ( 56) TGCAAAAA 1 chrII:3521452-3521532 ( 22) TGCAAAAA 1 chrV:14876371-14876451 ( 6) TGCAAAAA 1 chrX:9467675-9467755 ( 23) TGAAAAAA 1 chrIV:14825071-14825151 ( 51) TGAAAAAA 1 chrII:10388190-10388270 ( 12) TGAAAAAA 1 chrII:4238058-4238138 ( 34) TGCGAAAA 1 chrIII:3499995-3500075 ( 65) TGCGAAAA 1 chrIV:2805647-2805727 ( 68) TCCAAAAA 1 chrV:14855770-14855850 ( 3) TCCAAAAA 1 chrM:4299-4379 ( 66) TCCAAAAA 1 chrIII:6887746-6887826 ( 69) TGCAAAGA 1 chrIII:7030520-7030600 ( 22) TTCAAAAA 1 chrIII:4171152-4171232 ( 48) TGCAAAGA 1 chrIII:3916810-3916890 ( 12) TGCAAACA 1 chrV:18712277-18712357 ( 22) TTCAAAAA 1 chrII:7708719-7708799 ( 20) TGCAAACA 1 chrX:16604671-16604751 ( 37) GGCAAAAA 1 chrIII:12613557-12613637 ( 4) GGCAAAAA 1 chrI:3873959-3874039 ( 17) TGCAAAAC 1 chrII:5105243-5105323 ( 65) TGAGAAAA 1 chrI:1958523-1958603 ( 4) TGAGAAAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCAAAAA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.18967 E= 7.5e+000 -1145 -1145 -183 191 -1145 -120 170 -179 -51 174 -1145 -1145 176 -1145 -83 -1145 198 -1145 -1145 -1145 198 -1145 -1145 -1145 176 -178 -183 -1145 193 -278 -1145 -1145 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCAAAAA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 28 E= 7.5e+000 0.000000 0.000000 0.071429 0.928571 0.000000 0.107143 0.821429 0.071429 0.178571 0.821429 0.000000 0.000000 0.857143 0.000000 0.142857 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.857143 0.071429 0.071429 0.000000 0.964286 0.035714 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCAAAAA MEME-3 regular expression -------------------------------------------------------------------------------- TGCAAAAA -------------------------------------------------------------------------------- Time 13.98 secs. ******************************************************************************** ******************************************************************************** MOTIF CGYGCGGC MEME-4 width = 8 sites = 54 llr = 402 E-value = 4.6e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif CGYGCGGC MEME-4 Description -------------------------------------------------------------------------------- Simplified A :3:::::: pos.-specific C 916:81:a probability G :729:9a: matrix T 1:312::: bits 2.0 * 1.8 ** 1.6 * ** 1.4 * * *** Relative 1.2 * * *** Entropy 1.0 * ***** (10.7 bits) 0.8 ** ***** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CGCGCGGC consensus AT T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGYGCGGC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIII:10461283-10461363 15 1.52e-05 GTGTAAAATG CGCGCGGC ACACTTGCGA chrV:13962199-13962279 8 1.52e-05 TAAACTG CGCGCGGC AACTGCAAAA chrIII:4171152-4171232 13 1.52e-05 ATGTCATCTG CGCGCGGC ATATCTGCAA chrIII:4568703-4568783 20 1.52e-05 ATGAAAATGT CGCGCGGC GGAATTGCGA chrII:4238058-4238138 44 3.05e-05 TGCGAAAATG CGTGCGGC GCGTTGCAAC chrIII:1824665-1824745 35 3.05e-05 AACTAAACCC CGTGCGGC GCTCTTGCAA chrIV:9316196-9316276 25 3.05e-05 TGAATAAAAC CGTGCGGC GGAATTGCGA chrIII:4470905-4470985 45 4.58e-05 TCCATTAGGC CACGCGGC CACGAGAGCA chrX:6220064-6220144 70 4.58e-05 TCCATTGCGC CACGCGGC CAC chrX:1858822-1858902 36 4.58e-05 GGTTTTCACC CACGCGGC CCGGGTTCGA chrX:8646456-8646536 63 4.58e-05 GGTTTTCACC CACGCGGC CCGGGTTCGA chrII:6898218-6898298 15 4.58e-05 GGTTTTCACC CACGCGGC CCGGGTTCGA chrX:2613255-2613335 26 6.15e-05 gcctgccacg cgggcggc ccgggttcga chrX:12106153-12106233 62 6.15e-05 CTGAGCTAAC CGGGCGGC AATGGCATTA chrI:2514314-2514394 17 6.15e-05 CGTGGTGTTG CGGGCGGC AGGCGAACGT chrI:10593162-10593242 13 6.15e-05 gcctgccacg cgggcggc ccgggttcga chrX:10132641-10132721 40 7.68e-05 GCTGACTGGC CGCGTGGC GCAATGGATA chrI:9267124-9267204 1 7.68e-05 . CGCGTGGC CTAATGGATA chrX:13121284-13121364 8 7.68e-05 ggccgcc cgcgtggc aggcgagcat chrII:9566214-9566294 30 7.68e-05 TTTTCATGGC CGCGTGGC CTAATGGATA chrIV:3524796-3524876 26 7.68e-05 GGTGTCTGGC CGCGTGGC GCAATGGATA chrX:16928243-16928323 59 7.68e-05 ccgggccgcc cgcgtggc aggcgagcat chrI:5176376-5176456 72 9.21e-05 TGCGAAATAC CATGCGGC G chrII:10388190-10388270 72 1.22e-04 CCCATTTTTC CGCGCCGC C chrI:14606039-14606119 19 1.22e-04 GCTGGAAAAG TGCGCGGC AGACTTGCAC chrI:3873959-3874039 5 1.22e-04 tagg cgcgccgc acattgcAAA chrIV:143951-144031 34 1.53e-04 CGGTCATGGC CGTGTGGC CTAATGGATA chrV:14697068-14697148 11 1.53e-04 GGACACTCGG CAGGCGGC TACGCGGGAA chrX:14115641-14115721 53 1.53e-04 CTTTCGTGGC CGTGTGGC CTAATGGATA chrX:6903115-6903195 64 1.83e-04 CGCCTTAGAC CGCTCGGC CATCTCTCC chrV:6888960-6889040 48 2.44e-04 CGCCGATGCA CGGGTGGC GCAGTTGGTT chrI:14113227-14113307 9 2.44e-04 CGCAAAAC TGTGCGGC GGTGTTGCAA chrX:12367692-12367772 33 2.44e-04 GACGAGAGAC CGTGCCGC ATCGGAATAG chrI:1958523-1958603 22 2.44e-04 ACGGGAATTG TGTGCGGC GGTGTTGCGC chrV:11113332-11113412 28 2.44e-04 CCAAACgcaa tgtgcggc acgcgttttc chrIII:3175138-3175218 45 2.44e-04 TGCGGAACAC CGTGCCGC TTGCTTGCAA chrIII:10432331-10432411 6 2.74e-04 AAACC TACGCGGC CCCCATTATC chrV:11075906-11075986 22 2.74e-04 GGAAAAAATG TACGCGGC GACAATGACG chrIII:3664371-3664451 46 2.74e-04 TCGCTTGCAA CACGCCGC GCGCATTTCG chrV:19643168-19643248 39 3.51e-04 CCGGAAGCTG TGGGCGGC AGGCGAGCGC chrIII:5555092-5555172 24 3.51e-04 CCAAACTGTG CGCGGGGC ACTTGCGCAA chrII:4942519-4942599 72 3.51e-04 GCATCATTTG CGGGCCGC C chrII:5105243-5105323 37 3.81e-04 GCACGCTAAC CACTCGGC CACACATGTC chrIII:12874847-12874927 5 3.81e-04 CCCC CCTGCGGC GCGGTTTTCT chrX:11757859-11757939 39 3.81e-04 ACGCCTTAAC CACTCGGC CATCGTGCTG chrX:1837848-1837928 35 3.81e-04 GCGCGCTCGC CACTCGGC CGCGCAGGGC chrX:5812263-5812343 65 3.81e-04 AAGCTATCCG CCTGCGGC AACGCGGA chrIII:11371395-11371475 70 3.81e-04 AACACACTGC CACTCGGC CAC chrII:3521452-3521532 37 3.81e-04 AAAGGAGTTG CCTGCGGC TGGAATCGAA chrIII:1923600-1923680 15 4.26e-04 GGCGCGCGAG CGCGCGGT CGGTCAATCT chrI:14721586-14721666 38 4.26e-04 GCAATGCGCG CGCGCGGT TTTCGCAATA chrI:1575701-1575781 3 4.26e-04 GA CGCGTCGC GTCATCGTGG chrX:5707996-5708076 35 4.88e-04 TTTTAGTGAT CAGGTGGC CGAGTGGTTA chrIII:3499995-3500075 16 5.48e-04 TTCCCGCTTT CGTGGGGC CTCAAACCCG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGYGCGGC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:10461283-10461363 1.5e-05 14_[+4]_58 chrV:13962199-13962279 1.5e-05 7_[+4]_65 chrIII:4171152-4171232 1.5e-05 12_[+4]_60 chrIII:4568703-4568783 1.5e-05 19_[+4]_53 chrII:4238058-4238138 3.1e-05 43_[+4]_29 chrIII:1824665-1824745 3.1e-05 34_[+4]_38 chrIV:9316196-9316276 3.1e-05 24_[+4]_48 chrIII:4470905-4470985 4.6e-05 44_[+4]_28 chrX:6220064-6220144 4.6e-05 69_[+4]_3 chrX:1858822-1858902 4.6e-05 35_[+4]_37 chrX:8646456-8646536 4.6e-05 62_[+4]_10 chrII:6898218-6898298 4.6e-05 14_[+4]_58 chrX:2613255-2613335 6.2e-05 25_[+4]_47 chrX:12106153-12106233 6.2e-05 61_[+4]_11 chrI:2514314-2514394 6.2e-05 16_[+4]_56 chrI:10593162-10593242 6.2e-05 12_[+4]_60 chrX:10132641-10132721 7.7e-05 39_[+4]_33 chrI:9267124-9267204 7.7e-05 [+4]_72 chrX:13121284-13121364 7.7e-05 7_[+4]_65 chrII:9566214-9566294 7.7e-05 29_[+4]_43 chrIV:3524796-3524876 7.7e-05 25_[+4]_47 chrX:16928243-16928323 7.7e-05 58_[+4]_14 chrI:5176376-5176456 9.2e-05 71_[+4]_1 chrII:10388190-10388270 0.00012 71_[+4]_1 chrI:14606039-14606119 0.00012 18_[+4]_54 chrI:3873959-3874039 0.00012 4_[+4]_68 chrIV:143951-144031 0.00015 33_[+4]_39 chrV:14697068-14697148 0.00015 10_[+4]_62 chrX:14115641-14115721 0.00015 52_[+4]_20 chrX:6903115-6903195 0.00018 63_[+4]_9 chrV:6888960-6889040 0.00024 47_[+4]_25 chrI:14113227-14113307 0.00024 8_[+4]_64 chrX:12367692-12367772 0.00024 32_[+4]_40 chrI:1958523-1958603 0.00024 21_[+4]_51 chrV:11113332-11113412 0.00024 27_[+4]_45 chrIII:3175138-3175218 0.00024 44_[+4]_28 chrIII:10432331-10432411 0.00027 5_[+4]_67 chrV:11075906-11075986 0.00027 21_[+4]_51 chrIII:3664371-3664451 0.00027 45_[+4]_27 chrV:19643168-19643248 0.00035 38_[+4]_34 chrIII:5555092-5555172 0.00035 23_[+4]_49 chrII:4942519-4942599 0.00035 71_[+4]_1 chrII:5105243-5105323 0.00038 36_[+4]_36 chrIII:12874847-12874927 0.00038 4_[+4]_68 chrX:11757859-11757939 0.00038 38_[+4]_34 chrX:1837848-1837928 0.00038 34_[+4]_38 chrX:5812263-5812343 0.00038 64_[+4]_8 chrIII:11371395-11371475 0.00038 69_[+4]_3 chrII:3521452-3521532 0.00038 36_[+4]_36 chrIII:1923600-1923680 0.00043 14_[+4]_58 chrI:14721586-14721666 0.00043 37_[+4]_35 chrI:1575701-1575781 0.00043 2_[+4]_70 chrX:5707996-5708076 0.00049 34_[+4]_38 chrIII:3499995-3500075 0.00055 15_[+4]_57 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGYGCGGC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CGYGCGGC width=8 seqs=54 chrIII:10461283-10461363 ( 15) CGCGCGGC 1 chrV:13962199-13962279 ( 8) CGCGCGGC 1 chrIII:4171152-4171232 ( 13) CGCGCGGC 1 chrIII:4568703-4568783 ( 20) CGCGCGGC 1 chrII:4238058-4238138 ( 44) CGTGCGGC 1 chrIII:1824665-1824745 ( 35) CGTGCGGC 1 chrIV:9316196-9316276 ( 25) CGTGCGGC 1 chrIII:4470905-4470985 ( 45) CACGCGGC 1 chrX:6220064-6220144 ( 70) CACGCGGC 1 chrX:1858822-1858902 ( 36) CACGCGGC 1 chrX:8646456-8646536 ( 63) CACGCGGC 1 chrII:6898218-6898298 ( 15) CACGCGGC 1 chrX:2613255-2613335 ( 26) CGGGCGGC 1 chrX:12106153-12106233 ( 62) CGGGCGGC 1 chrI:2514314-2514394 ( 17) CGGGCGGC 1 chrI:10593162-10593242 ( 13) CGGGCGGC 1 chrX:10132641-10132721 ( 40) CGCGTGGC 1 chrI:9267124-9267204 ( 1) CGCGTGGC 1 chrX:13121284-13121364 ( 8) CGCGTGGC 1 chrII:9566214-9566294 ( 30) CGCGTGGC 1 chrIV:3524796-3524876 ( 26) CGCGTGGC 1 chrX:16928243-16928323 ( 59) CGCGTGGC 1 chrI:5176376-5176456 ( 72) CATGCGGC 1 chrII:10388190-10388270 ( 72) CGCGCCGC 1 chrI:14606039-14606119 ( 19) TGCGCGGC 1 chrI:3873959-3874039 ( 5) CGCGCCGC 1 chrIV:143951-144031 ( 34) CGTGTGGC 1 chrV:14697068-14697148 ( 11) CAGGCGGC 1 chrX:14115641-14115721 ( 53) CGTGTGGC 1 chrX:6903115-6903195 ( 64) CGCTCGGC 1 chrV:6888960-6889040 ( 48) CGGGTGGC 1 chrI:14113227-14113307 ( 9) TGTGCGGC 1 chrX:12367692-12367772 ( 33) CGTGCCGC 1 chrI:1958523-1958603 ( 22) TGTGCGGC 1 chrV:11113332-11113412 ( 28) TGTGCGGC 1 chrIII:3175138-3175218 ( 45) CGTGCCGC 1 chrIII:10432331-10432411 ( 6) TACGCGGC 1 chrV:11075906-11075986 ( 22) TACGCGGC 1 chrIII:3664371-3664451 ( 46) CACGCCGC 1 chrV:19643168-19643248 ( 39) TGGGCGGC 1 chrIII:5555092-5555172 ( 24) CGCGGGGC 1 chrII:4942519-4942599 ( 72) CGGGCCGC 1 chrII:5105243-5105323 ( 37) CACTCGGC 1 chrIII:12874847-12874927 ( 5) CCTGCGGC 1 chrX:11757859-11757939 ( 39) CACTCGGC 1 chrX:1837848-1837928 ( 35) CACTCGGC 1 chrX:5812263-5812343 ( 65) CCTGCGGC 1 chrIII:11371395-11371475 ( 70) CACTCGGC 1 chrII:3521452-3521532 ( 37) CCTGCGGC 1 chrIII:1923600-1923680 ( 15) CGCGCGGT 1 chrI:14721586-14721666 ( 38) CGCGCGGT 1 chrI:1575701-1575781 ( 3) CGCGTCGC 1 chrX:5707996-5708076 ( 35) CAGGTGGC 1 chrIII:3499995-3500075 ( 16) CGTGGGGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGYGCGGC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.96686 E= 4.6e+000 -1240 182 -1240 -93 13 -214 139 -1240 -1240 118 -61 17 -1240 -1240 184 -142 -1240 163 -277 -28 -1240 -92 178 -1240 -1240 -1240 198 -1240 -1240 197 -1240 -274 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGYGCGGC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 54 E= 4.6e+000 0.000000 0.870370 0.000000 0.129630 0.277778 0.055556 0.666667 0.000000 0.000000 0.555556 0.166667 0.277778 0.000000 0.000000 0.907407 0.092593 0.000000 0.759259 0.037037 0.203704 0.000000 0.129630 0.870370 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.962963 0.000000 0.037037 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGYGCGGC MEME-4 regular expression -------------------------------------------------------------------------------- C[GA][CT]G[CT]GGC -------------------------------------------------------------------------------- Time 17.57 secs. ******************************************************************************** ******************************************************************************** MOTIF GCTCTRCC MEME-5 width = 8 sites = 21 llr = 191 E-value = 7.5e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCTCTRCC MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::6:: pos.-specific C :a:a21aa probability G a:2::3:: matrix T ::8:8::: bits 2.0 ** * ** 1.8 ** * ** 1.6 ** * ** 1.4 ** * ** Relative 1.2 ***** ** Entropy 1.0 ***** ** (13.1 bits) 0.8 ***** ** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GCTCTACC consensus G CG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTCTRCC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:12106153-12106233 42 1.44e-05 AGAGTCTGGT GCTCTACC GACTGAGCTA chrV:13003486-13003566 71 1.44e-05 CTAAGGGAGC GCTCTACC AC chrI:13297685-13297765 36 1.44e-05 AGAGTCTGGT GCTCTACC GACTGAGCTA chrIII:6887746-6887826 30 1.44e-05 AAAGTCTCAC GCTCTACC AACTGAGCTA chrX:6292307-6292387 19 1.44e-05 CAAAGCGAGC GCTCTACC CCTGAGCTAT chrX:9637838-9637918 62 1.44e-05 CTAAGGGAGC GCTCTACC ACTGAGCTAT chrX:12458155-12458235 69 1.44e-05 CTAAGGGAGC GCTCTACC ACTG chrX:12890290-12890370 43 1.44e-05 CGAAGCGAGC GCTCTACC CCTGAGCTAT chrV:20694135-20694215 34 2.88e-05 GCAGTCGAAT GCTCTGCC ACTGAGCTAT chrV:14855770-14855850 65 2.88e-05 GCAGTCGAAT GCTCTGCC ACTGAGCT chrX:8818113-8818193 35 2.88e-05 GCAGTCGAAT GCTCTGCC ACTGAGCTAT chrIII:8678543-8678623 2 5.80e-05 C GCGCTACC ATTGCGCCAA chrII:3999714-3999794 71 5.80e-05 GACCTTGTCT GCTCCACC AG chrX:5319377-5319457 56 7.20e-05 TCAGTCGTAC GCTCTCCC AACTGAGCTA chrV:14876371-14876451 66 7.20e-05 TCAGTCGTAC GCTCTCCC AACTGAG chrIII:4171152-4171232 58 1.01e-04 TGCAAAGAAC GCTCCGCC CACAAACATT chrI:14606039-14606119 43 1.01e-04 GCACCCCCTG GCTCCGCC CATTTTTCTG chrX:5407429-5407509 32 1.01e-04 TGAGACTGAC GCGCTGCC TACTGCGCTA chrII:9774820-9774900 69 1.16e-04 GTTACCCACT GCGCCACC GAGG chrII:4942519-4942599 51 1.16e-04 CGTTACCACT GCGCCACC CGTGCATCAT chrIV:16398340-16398420 66 1.44e-04 CAGTGGTAGA GCGCTCCC TTAGCAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTCTRCC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:12106153-12106233 1.4e-05 41_[+5]_31 chrV:13003486-13003566 1.4e-05 70_[+5]_2 chrI:13297685-13297765 1.4e-05 35_[+5]_37 chrIII:6887746-6887826 1.4e-05 29_[+5]_43 chrX:6292307-6292387 1.4e-05 18_[+5]_54 chrX:9637838-9637918 1.4e-05 61_[+5]_11 chrX:12458155-12458235 1.4e-05 68_[+5]_4 chrX:12890290-12890370 1.4e-05 42_[+5]_30 chrV:20694135-20694215 2.9e-05 33_[+5]_39 chrV:14855770-14855850 2.9e-05 64_[+5]_8 chrX:8818113-8818193 2.9e-05 34_[+5]_38 chrIII:8678543-8678623 5.8e-05 1_[+5]_71 chrII:3999714-3999794 5.8e-05 70_[+5]_2 chrX:5319377-5319457 7.2e-05 55_[+5]_17 chrV:14876371-14876451 7.2e-05 65_[+5]_7 chrIII:4171152-4171232 0.0001 57_[+5]_15 chrI:14606039-14606119 0.0001 42_[+5]_30 chrX:5407429-5407509 0.0001 31_[+5]_41 chrII:9774820-9774900 0.00012 68_[+5]_4 chrII:4942519-4942599 0.00012 50_[+5]_22 chrIV:16398340-16398420 0.00014 65_[+5]_7 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTCTRCC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCTCTRCC width=8 seqs=21 chrX:12106153-12106233 ( 42) GCTCTACC 1 chrV:13003486-13003566 ( 71) GCTCTACC 1 chrI:13297685-13297765 ( 36) GCTCTACC 1 chrIII:6887746-6887826 ( 30) GCTCTACC 1 chrX:6292307-6292387 ( 19) GCTCTACC 1 chrX:9637838-9637918 ( 62) GCTCTACC 1 chrX:12458155-12458235 ( 69) GCTCTACC 1 chrX:12890290-12890370 ( 43) GCTCTACC 1 chrV:20694135-20694215 ( 34) GCTCTGCC 1 chrV:14855770-14855850 ( 65) GCTCTGCC 1 chrX:8818113-8818193 ( 35) GCTCTGCC 1 chrIII:8678543-8678623 ( 2) GCGCTACC 1 chrII:3999714-3999794 ( 71) GCTCCACC 1 chrX:5319377-5319457 ( 56) GCTCTCCC 1 chrV:14876371-14876451 ( 66) GCTCTCCC 1 chrIII:4171152-4171232 ( 58) GCTCCGCC 1 chrI:14606039-14606119 ( 43) GCTCCGCC 1 chrX:5407429-5407509 ( 32) GCGCTGCC 1 chrII:9774820-9774900 ( 69) GCGCCACC 1 chrII:4942519-4942599 ( 51) GCGCCACC 1 chrIV:16398340-16398420 ( 66) GCGCTCCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTCTRCC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.7488 E= 7.5e+000 -1104 -1104 198 -1104 -1104 202 -1104 -1104 -1104 -1104 -9 162 -1104 202 -1104 -1104 -1104 -5 -1104 162 117 -78 17 -1104 -1104 202 -1104 -1104 -1104 202 -1104 -1104 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTCTRCC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 21 E= 7.5e+000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.238095 0.761905 0.000000 1.000000 0.000000 0.000000 0.000000 0.238095 0.000000 0.761905 0.571429 0.142857 0.285714 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTCTRCC MEME-5 regular expression -------------------------------------------------------------------------------- GC[TG]C[TC][AG]CC -------------------------------------------------------------------------------- Time 21.06 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrM:5420-5500 5.05e-01 80 chrM:7608-7688 9.75e-01 80 chrI:933476-933556 5.00e-01 80 chrI:2803308-2803388 9.79e-01 80 chrM:10807-10887 9.53e-01 80 chrI:2829206-2829286 8.67e-01 80 chrM:10194-10274 9.90e-01 80 chrX:5056378-5056458 5.52e-01 80 chrM:8264-8344 7.54e-01 80 chrM:3012-3092 8.78e-01 80 chrIII:3499995-3500075 5.19e-03 64_[+3(4.95e-05)]_8 chrM:7278-7358 4.23e-01 80 chrV:18720248-18720328 7.85e-01 80 chrIII:931564-931644 9.20e-01 80 chrIV:8334360-8334440 8.00e-01 80 chrI:2826958-2827038 3.05e-01 80 chrM:1259-1339 5.73e-01 80 chrX:12692139-12692219 3.64e-01 80 chrV:12510126-12510206 1.00e+00 80 chrM:3989-4069 8.15e-01 80 chrV:1244202-1244282 5.00e-01 80 chrM:4299-4379 1.99e-01 65_[+3(6.53e-05)]_7 chrM:2161-2241 9.96e-01 80 chrM:6103-6183 9.93e-01 80 chrX:8156136-8156216 2.27e-01 80 chrI:7711734-7711814 9.12e-01 80 chrM:9177-9257 9.25e-01 80 chrI:11609209-11609289 7.06e-01 80 chrIV:9316196-9316276 6.97e-03 24_[+4(3.05e-05)]_48 chrM:4619-4699 9.94e-01 80 chrV:5284523-5284603 9.86e-01 80 chrV:7231017-7231097 4.90e-01 80 chrIII:3664371-3664451 7.68e-02 80 chrM:12417-12497 7.83e-01 80 chrIII:1824665-1824745 2.42e-03 34_[+4(3.05e-05)]_38 chrV:14876371-14876451 1.22e-03 5_[+3(1.63e-05)]_52_[+5(7.20e-05)]_\ 7 chrX:9296760-9296840 2.82e-01 80 chrI:1575701-1575781 1.20e-02 72_[+1(8.96e-05)] chrII:6898218-6898298 2.21e-02 14_[+4(4.58e-05)]_58 chrII:7001562-7001642 8.33e-02 71_[+2(1.54e-05)]_1 chrX:12693243-12693323 4.96e-01 80 chrI:2821527-2821607 9.16e-01 80 chrM:5633-5713 9.92e-01 80 chrX:14115641-14115721 2.19e-01 80 chrII:3597139-3597219 9.74e-01 80 chrIII:9104262-9104342 2.75e-01 80 chrII:9258342-9258422 4.24e-01 80 chrIV:7488640-7488720 3.84e-01 80 chrIV:16399213-16399293 9.48e-01 80 chrIV:9048255-9048335 8.58e-01 80 chrX:8646456-8646536 1.69e-01 62_[+4(4.58e-05)]_10 chrV:4510494-4510574 8.18e-01 80 chrX:14490097-14490177 3.06e-01 80 chrIV:9269086-9269166 6.54e-01 80 chrIV:11071029-11071109 1.00e+00 80 chrX:16928243-16928323 6.83e-04 42_[+1(1.48e-05)]_8_[+4(7.68e-05)]_\ 14 chrIII:12613557-12613637 9.46e-02 80 chrIV:16388389-16388469 5.32e-01 80 chrII:3999714-3999794 7.08e-02 70_[+5(5.80e-05)]_2 chrII:7708719-7708799 1.74e-01 80 chrII:10990837-10990917 6.85e-01 80 chrI:3873959-3874039 9.75e-03 80 chrI:7715740-7715820 7.37e-01 80 chrX:4964445-4964525 6.98e-01 80 chrIV:16400920-16401000 4.13e-01 80 chrI:4032659-4032739 6.26e-01 80 chrX:1120403-1120483 1.00e+00 80 chrIII:3175138-3175218 7.58e-02 80 chrX:8818113-8818193 1.99e-03 1_[+1(6.04e-05)]_25_[+5(2.88e-05)]_\ 38 chrII:4942519-4942599 2.11e-02 80 chrX:5319377-5319457 2.21e-01 55_[+5(7.20e-05)]_17 chrIII:8106627-8106707 6.17e-02 32_[+2(3.12e-05)]_40 chrX:9225485-9225565 3.65e-01 80 chrV:14855770-14855850 4.01e-05 2_[+3(6.53e-05)]_21_[+1(6.04e-05)]_\ 25_[+5(2.88e-05)]_8 chrIII:13721376-13721456 9.67e-01 80 chrX:10821366-10821446 4.15e-01 80 chrV:18712277-18712357 3.60e-01 80 chrX:8386205-8386285 6.81e-03 52_[+1(8.96e-05)]_20 chrI:7472339-7472419 6.32e-01 80 chrX:5407429-5407509 7.93e-02 80 chrI:6136558-6136638 7.38e-03 45_[+2(1.54e-05)]_27 chrI:1651425-1651505 5.20e-01 80 chrII:3521452-3521532 7.09e-05 21_[+3(1.63e-05)]_20_[+1(4.50e-05)]_\ 23 chrV:12780433-12780513 6.92e-01 80 chrIII:3916810-3916890 1.21e-01 80 chrX:12890290-12890370 2.85e-04 9_[+1(2.97e-05)]_25_[+5(1.44e-05)]_\ 30 chrV:13396518-13396598 7.51e-01 80 chrV:10717162-10717242 8.98e-01 80 chrII:10169386-10169466 7.40e-01 80 chrX:5707996-5708076 4.70e-01 80 chrI:14606039-14606119 6.47e-04 80 chrM:9383-9463 4.36e-01 80 chrIV:13029951-13030031 7.80e-01 80 chrI:11670290-11670370 8.76e-01 80 chrX:1858822-1858902 3.09e-02 35_[+4(4.58e-05)]_37 chrV:11844899-11844979 8.14e-02 80 chrII:7811023-7811103 6.29e-01 80 chrII:5772823-5772903 8.34e-01 80 chrII:8547125-8547205 6.45e-01 80 chrIV:16398340-16398420 2.91e-04 50_[+2(1.54e-05)]_22 chrI:6532057-6532137 1.15e-01 80 chrIII:4568703-4568783 1.92e-02 19_[+4(1.52e-05)]_16_[+4(3.05e-05)]_\ 29 chrIV:9191332-9191412 4.44e-01 80 chrIV:3524796-3524876 6.26e-02 25_[+4(7.68e-05)]_47 chrIV:11026159-11026239 9.03e-01 80 chrI:9268922-9269002 1.55e-01 20_[+1(7.48e-05)]_52 chrV:11075906-11075986 1.35e-02 55_[+3(1.63e-05)]_17 chrII:15263291-15263371 9.65e-01 80 chrIII:8650354-8650434 4.19e-02 41_[+1(1.48e-05)]_31 chrX:1880872-1880952 9.16e-02 80 chrIV:15561523-15561603 9.78e-01 80 chrI:14721586-14721666 2.79e-02 80 chrIII:10432331-10432411 4.53e-02 80 chrIII:10624798-10624878 8.80e-01 80 chrX:12458155-12458235 1.29e-05 7_[+3(1.63e-05)]_20_[+1(2.97e-05)]_\ 25_[+5(1.44e-05)]_4 chrI:4176037-4176117 9.81e-01 80 chrIV:1388211-1388291 2.36e-03 19_[+1(1.48e-05)]_53 chrV:15551823-15551903 9.98e-01 80 chrII:5293397-5293477 9.54e-01 80 chrX:3348006-3348086 4.27e-01 80 chrIV:9477738-9477818 8.11e-01 80 chrIII:4171152-4171232 1.50e-04 12_[+4(1.52e-05)]_60 chrI:2935738-2935818 5.28e-02 80 chrX:2885448-2885528 8.32e-01 80 chrII:9566214-9566294 3.71e-02 29_[+4(7.68e-05)]_43 chrIII:1122399-1122479 5.43e-03 41_[+2(3.12e-05)]_31 chrX:13653747-13653827 6.29e-01 80 chrV:4731531-4731611 6.09e-02 59_[+3(1.63e-05)]_13 chrI:9988922-9989002 6.26e-01 80 chrV:19126041-19126121 1.11e-02 9_[+2(1.54e-05)]_63 chrX:5686319-5686399 3.99e-01 80 chrII:6248619-6248699 2.80e-01 80 chrII:3567733-3567813 1.09e-02 45_[+1(1.48e-05)]_27 chrII:4701515-4701595 2.30e-01 80 chrIV:842772-842852 7.85e-01 80 chrIII:535347-535427 1.39e-02 41_[+2(1.54e-05)]_31 chrI:11095799-11095879 6.03e-02 80 chrX:7951709-7951789 6.66e-01 80 chrV:14697068-14697148 1.11e-01 80 chrIV:143951-144031 2.66e-01 80 chrX:9637838-9637918 2.13e-03 28_[+1(2.97e-05)]_25_[+5(1.44e-05)]_\ 11 chrIV:2805647-2805727 1.29e-01 67_[+3(6.53e-05)]_5 chrIII:1601627-1601707 7.38e-01 80 chrX:6220064-6220144 9.86e-04 69_[+4(4.58e-05)]_3 chrV:11113332-11113412 3.07e-01 80 chrII:11635237-11635317 4.55e-01 80 chrX:13511954-13512034 6.79e-02 30_[+1(2.97e-05)]_42 chrX:14804857-14804937 1.10e-02 26_[+2(1.54e-05)]_46 chrV:11239376-11239456 3.76e-01 80 chrII:10548979-10549059 2.00e-01 80 chrI:1958523-1958603 2.68e-02 80 chrIII:7030520-7030600 1.47e-02 51_[+1(4.50e-05)]_21 chrX:6903115-6903195 1.94e-04 13_[+1(1.48e-05)]_59 chrX:12367692-12367772 3.60e-01 80 chrV:13962199-13962279 9.32e-04 7_[+4(1.52e-05)]_3_[+3(1.63e-05)]_\ 54 chrX:9337950-9338030 5.78e-01 80 chrIII:6158750-6158830 9.48e-01 80 chrX:16604671-16604751 9.78e-03 63_[+1(2.97e-05)]_9 chrI:11505528-11505608 8.39e-02 29_[+2(1.54e-05)]_43 chrV:20694135-20694215 5.73e-03 [+1(6.04e-05)]_25_[+5(2.88e-05)]_39 chrIII:11371395-11371475 2.91e-03 29_[+1(6.04e-05)]_43 chrX:9932523-9932603 6.41e-01 80 chrIII:9861673-9861753 8.41e-01 80 chrX:5812263-5812343 3.21e-01 80 chrX:11935146-11935226 4.73e-01 80 chrX:1837848-1837928 2.57e-01 80 chrX:10963816-10963896 1.40e-01 80 chrI:11517284-11517364 4.90e-01 80 chrII:11959356-11959436 3.54e-02 72_[+1(7.48e-05)] chrI:9605729-9605809 4.36e-02 80 chrX:593398-593478 3.21e-01 80 chrX:6593558-6593638 1.23e-01 44_[+2(1.54e-05)]_28 chrV:1474588-1474668 4.96e-01 80 chrIII:5555092-5555172 3.34e-02 80 chrIII:10707201-10707281 5.51e-01 80 chrIV:16776111-16776191 2.03e-01 80 chrIII:4470905-4470985 7.38e-02 44_[+4(4.58e-05)]_28 chrII:4238058-4238138 2.21e-06 20_[+4(3.05e-05)]_5_[+3(4.95e-05)]_\ 2_[+4(3.05e-05)]_11_[+2(4.61e-05)]_10 chrV:9503532-9503612 4.27e-03 36_[+2(1.54e-05)]_36 chrIV:16382257-16382337 7.29e-01 80 chrII:9774820-9774900 6.69e-03 80 chrIII:6453817-6453897 1.51e-01 80 chrX:12563760-12563840 2.72e-02 34_[+2(1.54e-05)]_38 chrX:6371353-6371433 3.36e-01 80 chrX:2536582-2536662 6.75e-01 80 chrV:11610631-11610711 2.64e-02 17_[+3(1.63e-05)]_55 chrII:10388190-10388270 3.00e-04 11_[+3(3.32e-05)]_61 chrIII:5295005-5295085 1.98e-02 44_[+3(1.63e-05)]_28 chrI:5176376-5176456 1.45e-01 71_[+4(9.21e-05)]_1 chrX:15742019-15742099 3.17e-01 80 chrI:10593162-10593242 2.06e-02 12_[+4(6.15e-05)]_60 chrX:13121284-13121364 2.85e-02 7_[+4(7.68e-05)]_65 chrIV:17087574-17087654 7.60e-01 80 chrX:12661176-12661256 9.68e-02 80 chrII:8107270-8107350 3.48e-01 80 chrI:2514314-2514394 1.45e-01 16_[+4(6.15e-05)]_56 chrX:14312578-14312658 6.87e-01 80 chrIV:8252998-8253078 5.33e-01 80 chrIII:8874234-8874314 9.06e-01 80 chrX:1379564-1379644 1.21e-02 53_[+1(1.48e-05)]_19 chrX:15297543-15297623 6.36e-01 80 chrI:14737436-14737516 3.83e-01 80 chrV:6267580-6267660 9.03e-01 80 chrX:6292307-6292387 4.23e-03 18_[+5(1.44e-05)]_54 chrII:5781988-5782068 4.19e-02 80 chrIII:6887746-6887826 2.67e-03 29_[+5(1.44e-05)]_43 chrI:13297685-13297765 6.49e-04 2_[+1(1.48e-05)]_25_[+5(1.44e-05)]_\ 37 chrIV:6556759-6556839 5.48e-01 80 chrII:6853178-6853258 7.98e-01 80 chrX:13264759-13264839 2.97e-01 80 chrII:14143918-14143998 6.32e-01 80 chrII:5292358-5292438 6.89e-01 80 chrX:3970163-3970243 9.25e-01 80 chrIV:14825071-14825151 1.25e-01 50_[+3(3.32e-05)]_22 chrIII:4378794-4378874 7.49e-01 80 chrX:9999851-9999931 8.60e-01 80 chrIV:322623-322703 5.16e-02 23_[+1(2.97e-05)]_49 chrIII:8678543-8678623 3.34e-02 1_[+5(5.80e-05)]_71 chrIII:5602189-5602269 9.53e-01 80 chrI:9267124-9267204 2.20e-02 [+4(7.68e-05)]_72 chrX:10132641-10132721 1.48e-01 39_[+4(7.68e-05)]_33 chrIII:8937706-8937786 3.21e-01 80 chrII:12494708-12494788 2.92e-03 39_[+2(1.54e-05)]_33 chrX:11757859-11757939 2.67e-01 80 chrIV:11549848-11549928 5.24e-03 26_[+1(1.48e-05)]_46 chrIII:5211296-5211376 4.69e-01 80 chrI:488362-488442 1.19e-01 80 chrII:8075452-8075532 1.50e-01 80 chrIII:12874847-12874927 5.13e-03 34_[+2(6.14e-05)]_38 chrIII:10461283-10461363 4.80e-03 14_[+4(1.52e-05)]_58 chrII:5032736-5032816 1.90e-02 40_[+2(1.54e-05)]_32 chrX:9467675-9467755 4.71e-03 22_[+3(3.32e-05)]_38_[+1(2.97e-05)]_\ 4 chrV:13003486-13003566 5.05e-04 37_[+1(2.97e-05)]_25_[+5(1.44e-05)]_\ 2 chrX:3697726-3697806 8.03e-02 36_[+2(3.12e-05)]_36 chrIV:14838323-14838403 2.00e-02 11_[+1(1.48e-05)]_61 chrX:13527435-13527515 6.54e-01 80 chrI:14113227-14113307 4.49e-03 42_[+3(1.63e-05)]_30 chrI:6105745-6105825 2.29e-02 16_[+1(4.50e-05)]_56 chrX:16590948-16591028 6.60e-01 80 chrI:2410098-2410178 8.14e-02 80 chrX:16147856-16147936 9.43e-01 80 chrIV:8375530-8375610 9.02e-01 80 chrIV:14034192-14034272 8.51e-01 80 chrV:19643168-19643248 1.15e-02 22_[+1(1.48e-05)]_50 chrX:12106153-12106233 2.77e-05 8_[+1(1.48e-05)]_25_[+5(1.44e-05)]_\ 12_[+4(6.15e-05)]_11 chrIII:835893-835973 6.44e-01 80 chrII:5105243-5105323 2.41e-02 80 chrX:2613255-2613335 2.84e-02 25_[+4(6.15e-05)]_47 chrV:6888960-6889040 3.97e-02 80 chrIII:1923600-1923680 4.05e-01 80 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n08.farnam.hpc.yale.internal ********************************************************************************