******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/worm/fasta/RankLinear2.0_40/pha-4.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrV:20745423-20745503 1.0000 80 chrIII:13530997-13531077 1.0000 80 chrII:14684562-14684642 1.0000 80 chrV:20753944-20754024 1.0000 80 chrII:14967245-14967325 1.0000 80 chrII:4779896-4779976 1.0000 80 chrX:5142581-5142661 1.0000 80 chrV:20756763-20756843 1.0000 80 chrI:6593482-6593562 1.0000 80 chrII:8732498-8732578 1.0000 80 chrII:8735010-8735090 1.0000 80 chrV:9451653-9451733 1.0000 80 chrX:16085250-16085330 1.0000 80 chrII:8731463-8731543 1.0000 80 chrX:5781405-5781485 1.0000 80 chrX:13945219-13945299 1.0000 80 chrII:8731989-8732069 1.0000 80 chrV:20746967-20747047 1.0000 80 chrIV:3720791-3720871 1.0000 80 chrIII:1226444-1226524 1.0000 80 chrV:13576055-13576135 1.0000 80 chrX:9103178-9103258 1.0000 80 chrII:15219160-15219240 1.0000 80 chrX:2047170-2047250 1.0000 80 chrIV:1657204-1657284 1.0000 80 chrI:13028606-13028686 1.0000 80 chrII:6409862-6409942 1.0000 80 chrII:5398950-5399030 1.0000 80 chrIV:4674465-4674545 1.0000 80 chrI:14625133-14625213 1.0000 80 chrX:9602143-9602223 1.0000 80 chrX:9100909-9100989 1.0000 80 chrI:7714050-7714130 1.0000 80 chrII:10510369-10510449 1.0000 80 chrX:9092020-9092100 1.0000 80 chrIII:7322144-7322224 1.0000 80 chrI:4420785-4420865 1.0000 80 chrIII:710189-710269 1.0000 80 chrX:9452233-9452313 1.0000 80 chrV:20749190-20749270 1.0000 80 chrV:12196804-12196884 1.0000 80 chrIII:3307590-3307670 1.0000 80 chrIII:3669652-3669732 1.0000 80 chrIV:5603502-5603582 1.0000 80 chrV:9673610-9673690 1.0000 80 chrX:9396502-9396582 1.0000 80 chrIII:7317480-7317560 1.0000 80 chrI:11091032-11091112 1.0000 80 chrIV:12048092-12048172 1.0000 80 chrII:11221891-11221971 1.0000 80 chrX:12005980-12006060 1.0000 80 chrIV:11568727-11568807 1.0000 80 chrIV:10811575-10811655 1.0000 80 chrII:9230706-9230786 1.0000 80 chrIV:13759517-13759597 1.0000 80 chrX:10770177-10770257 1.0000 80 chrII:4648982-4649062 1.0000 80 chrIII:8719916-8719996 1.0000 80 chrX:12181773-12181853 1.0000 80 chrIII:11425612-11425692 1.0000 80 chrV:13209705-13209785 1.0000 80 chrIV:6576166-6576246 1.0000 80 chrII:9186026-9186106 1.0000 80 chrIV:14605259-14605339 1.0000 80 chrIV:5565255-5565335 1.0000 80 chrX:2482769-2482849 1.0000 80 chrIII:11947628-11947708 1.0000 80 chrX:16412164-16412244 1.0000 80 chrIII:8354837-8354917 1.0000 80 chrII:8702077-8702157 1.0000 80 chrIII:2294862-2294942 1.0000 80 chrV:20752801-20752881 1.0000 80 chrX:14559675-14559755 1.0000 80 chrIV:7523884-7523964 1.0000 80 chrI:11673424-11673504 1.0000 80 chrIII:9664995-9665075 1.0000 80 chrIV:1375437-1375517 1.0000 80 chrIV:6500959-6501039 1.0000 80 chrIV:10867539-10867619 1.0000 80 chrV:19428049-19428129 1.0000 80 chrI:1290476-1290556 1.0000 80 chrX:2700791-2700871 1.0000 80 chrV:10718557-10718637 1.0000 80 chrIV:1881950-1882030 1.0000 80 chrI:13508781-13508861 1.0000 80 chrII:10203957-10204037 1.0000 80 chrX:3227054-3227134 1.0000 80 chrX:3826300-3826380 1.0000 80 chrV:15497865-15497945 1.0000 80 chrX:10618772-10618852 1.0000 80 chrV:7847850-7847930 1.0000 80 chrIII:8733450-8733530 1.0000 80 chrII:6937219-6937299 1.0000 80 chrI:7969382-7969462 1.0000 80 chrIV:11694308-11694388 1.0000 80 chrV:8445796-8445876 1.0000 80 chrII:10136915-10136995 1.0000 80 chrI:1392934-1393014 1.0000 80 chrII:7183660-7183740 1.0000 80 chrII:11393965-11394045 1.0000 80 chrX:647797-647877 1.0000 80 chrII:9285078-9285158 1.0000 80 chrV:2259936-2260016 1.0000 80 chrII:8733919-8733999 1.0000 80 chrX:13743507-13743587 1.0000 80 chrX:3307078-3307158 1.0000 80 chrX:11664343-11664423 1.0000 80 chrI:6077412-6077492 1.0000 80 chrV:10247113-10247193 1.0000 80 chrIII:622911-622991 1.0000 80 chrX:11597926-11598006 1.0000 80 chrV:19496605-19496685 1.0000 80 chrII:202141-202221 1.0000 80 chrV:12486955-12487035 1.0000 80 chrII:8899539-8899619 1.0000 80 chrIII:9352758-9352838 1.0000 80 chrV:6480554-6480634 1.0000 80 chrI:6958791-6958871 1.0000 80 chrII:4971612-4971692 1.0000 80 chrIII:13732879-13732959 1.0000 80 chrII:11305749-11305829 1.0000 80 chrX:2367240-2367320 1.0000 80 chrX:5772970-5773050 1.0000 80 chrI:14902887-14902967 1.0000 80 chrIII:9358531-9358611 1.0000 80 chrV:11207907-11207987 1.0000 80 chrX:10624365-10624445 1.0000 80 chrIV:4852069-4852149 1.0000 80 chrII:7343827-7343907 1.0000 80 chrIV:14119300-14119380 1.0000 80 chrII:12456152-12456232 1.0000 80 chrI:5518852-5518932 1.0000 80 chrV:2218997-2219077 1.0000 80 chrIV:13865297-13865377 1.0000 80 chrI:4977421-4977501 1.0000 80 chrIV:3232120-3232200 1.0000 80 chrII:8451527-8451607 1.0000 80 chrIII:13254318-13254398 1.0000 80 chrX:15879799-15879879 1.0000 80 chrIII:8136649-8136729 1.0000 80 chrII:8095460-8095540 1.0000 80 chrIII:9446635-9446715 1.0000 80 chrI:7176762-7176842 1.0000 80 chrII:6417064-6417144 1.0000 80 chrIV:14617663-14617743 1.0000 80 chrIV:8002629-8002709 1.0000 80 chrI:14948187-14948267 1.0000 80 chrX:7953859-7953939 1.0000 80 chrX:5454617-5454697 1.0000 80 chrII:6837198-6837278 1.0000 80 chrX:6729768-6729848 1.0000 80 chrII:8733521-8733601 1.0000 80 chrI:6412690-6412770 1.0000 80 chrX:8658119-8658199 1.0000 80 chrIII:908120-908200 1.0000 80 chrI:4434036-4434116 1.0000 80 chrX:16150353-16150433 1.0000 80 chrV:4800717-4800797 1.0000 80 chrX:432593-432673 1.0000 80 chrI:260297-260377 1.0000 80 chrX:16814181-16814261 1.0000 80 chrIV:5600473-5600553 1.0000 80 chrX:17330694-17330774 1.0000 80 chrIV:10421457-10421537 1.0000 80 chrII:8985673-8985753 1.0000 80 chrIII:5980473-5980553 1.0000 80 chrIII:6346106-6346186 1.0000 80 chrII:7030270-7030350 1.0000 80 chrII:14043366-14043446 1.0000 80 chrV:8964328-8964408 1.0000 80 chrI:9087257-9087337 1.0000 80 chrI:11280826-11280906 1.0000 80 chrV:14736333-14736413 1.0000 80 chrX:6932257-6932337 1.0000 80 chrII:10988807-10988887 1.0000 80 chrI:13031519-13031599 1.0000 80 chrII:7623603-7623683 1.0000 80 chrI:6577197-6577277 1.0000 80 chrX:3317678-3317758 1.0000 80 chrI:6882075-6882155 1.0000 80 chrX:12179086-12179166 1.0000 80 chrIII:5665454-5665534 1.0000 80 chrII:2195697-2195777 1.0000 80 chrII:12104675-12104755 1.0000 80 chrIV:2785192-2785272 1.0000 80 chrIII:8297069-8297149 1.0000 80 chrIII:95127-95207 1.0000 80 chrII:4693356-4693436 1.0000 80 chrX:13669797-13669877 1.0000 80 chrIII:8491723-8491803 1.0000 80 chrI:5606908-5606988 1.0000 80 chrX:16332033-16332113 1.0000 80 chrX:9102274-9102354 1.0000 80 chrII:8734646-8734726 1.0000 80 chrX:2368666-2368746 1.0000 80 chrX:854361-854441 1.0000 80 chrIV:9032718-9032798 1.0000 80 chrIV:12999208-12999288 1.0000 80 chrV:9440815-9440895 1.0000 80 chrIII:13187045-13187125 1.0000 80 chrI:9839479-9839559 1.0000 80 chrIII:12178286-12178366 1.0000 80 chrV:11950788-11950868 1.0000 80 chrII:2455005-2455085 1.0000 80 chrIV:5360033-5360113 1.0000 80 chrIII:5233298-5233378 1.0000 80 chrI:14320462-14320542 1.0000 80 chrV:11321874-11321954 1.0000 80 chrX:15508133-15508213 1.0000 80 chrV:5850559-5850639 1.0000 80 chrIII:13713077-13713157 1.0000 80 chrIII:13000680-13000760 1.0000 80 chrIII:517563-517643 1.0000 80 chrIII:12920041-12920121 1.0000 80 chrI:14325442-14325522 1.0000 80 chrV:11675187-11675267 1.0000 80 chrI:4745410-4745490 1.0000 80 chrX:2498063-2498143 1.0000 80 chrIV:7099518-7099598 1.0000 80 chrI:7548400-7548480 1.0000 80 chrX:11248231-11248311 1.0000 80 chrV:19153426-19153506 1.0000 80 chrII:8225049-8225129 1.0000 80 chrV:12737864-12737944 1.0000 80 chrI:2974851-2974931 1.0000 80 chrV:7065666-7065746 1.0000 80 chrI:6712963-6713043 1.0000 80 chrII:4002371-4002451 1.0000 80 chrIV:8170408-8170488 1.0000 80 chrX:15520047-15520127 1.0000 80 chrV:1570207-1570287 1.0000 80 chrII:6926251-6926331 1.0000 80 chrII:13196911-13196991 1.0000 80 chrV:7811865-7811945 1.0000 80 chrII:7034219-7034299 1.0000 80 chrI:6151607-6151687 1.0000 80 chrV:20068548-20068628 1.0000 80 chrIV:9667217-9667297 1.0000 80 chrII:8732704-8732784 1.0000 80 chrIII:558953-559033 1.0000 80 chrI:13499045-13499125 1.0000 80 chrII:5937538-5937618 1.0000 80 chrV:16040585-16040665 1.0000 80 chrV:8796988-8797068 1.0000 80 chrII:7810177-7810257 1.0000 80 chrIV:9368396-9368476 1.0000 80 chrX:2698881-2698961 1.0000 80 chrIV:13169588-13169668 1.0000 80 chrI:6945731-6945811 1.0000 80 chrII:10549455-10549535 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/worm/inference_raw/MEME/RankLinear2.0_40_pha-4/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/worm/fasta/RankLinear2.0_40/pha-4.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.267 C 0.236 G 0.221 T 0.275 Background letter frequencies (from file dataset with add-one prior applied): A 0.267 C 0.236 G 0.221 T 0.275 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF TGTAAAYA MEME-1 width = 8 sites = 95 llr = 711 E-value = 5.1e-040 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGTAAAYA MEME-1 Description -------------------------------------------------------------------------------- Simplified A 22:79a:a pos.-specific C 1:231:5: probability G :8:::::: matrix T 7:8:::5: bits 2.2 2.0 * * 1.7 * * 1.5 * * * Relative 1.3 ** ** * Entropy 1.1 ******* (10.8 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TGTAAACA consensus C T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTAAAYA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:16814181-16814261 55 2.00e-05 CGTTGCGCAG TGTAAACA AAGATGGGAT chrX:6729768-6729848 51 2.00e-05 GTTTTGACGG TGTAAACA ACGGCCCCAT chrIV:3232120-3232200 33 2.00e-05 GCGCACAATT TGTAAACA CATATATATA chrII:12456152-12456232 41 2.00e-05 TGCAGTGCTA TGTAAACA GCGGCCGGCA chrV:11207907-11207987 57 2.00e-05 GGTCAAATTG TGTAAACA TGCAAATAGC chrI:14902887-14902967 17 2.00e-05 AACAGGTCCA TGTAAACA TGTGTACACT chrIII:9352758-9352838 36 2.00e-05 CTATTTACTT TGTAAACA GTGGTGGAAA chrI:1392934-1393014 14 2.00e-05 ACGGGGAATG TGTAAACA GCCCGGCGAA chrV:19428049-19428129 55 2.00e-05 cctaAGGAAA TGTAAACA GGCATGTGTA chrX:10770177-10770257 27 2.00e-05 GCATCGTTAG TGTAAACA TTACGAGTGT chrX:12005980-12006060 25 2.00e-05 GTGTAACGTG TGTAAACA TGCACGGAGC chrIV:12048092-12048172 65 2.00e-05 GTCTCAAAAA TGTAAACA CACTTCAC chrI:11091032-11091112 41 2.00e-05 CGCACCCTCA TGTAAACA ATTGAATGAC chrV:9673610-9673690 55 2.00e-05 TTTATGCGGG TGTAAACA TTCAATAGAC chrV:1570207-1570287 55 4.34e-05 TAGTGTCAAA TGTAAATA ATGGAATATA chrIII:5665454-5665534 63 4.34e-05 CACACAACAC TGTAAATA ATAGATATTT chrI:6577197-6577277 8 4.34e-05 TTACTAT TGTAAATA CCATCCCTCA chrII:6837198-6837278 28 4.34e-05 ACCGCACTTG TGTAAATA TTGACACAGT chrX:7953859-7953939 49 4.34e-05 ATAGCACAAA TGtaaata agcaaataaa chrIV:11694308-11694388 53 4.34e-05 GATTGTGGTA TGTAAATA TGGGTAACTA chrV:15497865-15497945 72 4.34e-05 TCTCCATGTA TGTAAATA T chrIII:7322144-7322224 27 4.34e-05 GACTTTTCCA TGTAAATA TACACATTTT chrX:2047170-2047250 16 4.34e-05 TAAGCCAATA TGTAAATA CAAATACGAC chrX:13945219-13945299 37 4.34e-05 CTCTTACTTA TGTAAATA AGTCAGTGCG chrX:16085250-16085330 55 4.34e-05 CCGACTGTTT TGTAAATA AACGGTCTAC chrII:4779896-4779976 64 4.34e-05 TAACGGCTTT TGTAAATA CGCGTTGGA chrIII:13530997-13531077 17 4.34e-05 CGATGGCTAC TGTAAATA ACAAACGAGA chrX:2368666-2368746 40 6.11e-05 CGCCCACATT TGTCAACA CACGGTTCTT chrX:3317678-3317758 45 6.11e-05 GAATACATAA TGTCAACA AACGGGGCTA chrX:647797-647877 17 6.11e-05 GCTGGTTCAA TGTCAACA ATAGTGGTTG chrIV:10867539-10867619 51 6.11e-05 CTCGCTGTGT TGTCAACA AGTGCAAAGT chrX:16412164-16412244 41 6.11e-05 AATCAATAAG TGTCAACA AGCAGCGGCG chrIV:6576166-6576246 51 6.11e-05 ACCAACCGTC TGTCAACA ATGACACGGG chrX:9602143-9602223 61 6.11e-05 AGTTTTGGAA TGTCAACA TTTGCATGTT chrIV:4674465-4674545 60 6.11e-05 CAAATTACTG TGTCAACA TGGACATGAA chrIV:3720791-3720871 35 6.11e-05 TACACTTGTG TGTCAACA AATATTGATT chrX:5781405-5781485 41 6.11e-05 AGCTGCACAA TGTCAACA CACAAGGCGG chrV:8796988-8797068 50 8.18e-05 CACATTGTAT TGTCAATA AAGGTGAAGA chrI:7548400-7548480 62 8.18e-05 CGATATGTAA TGTCAATA AACGGGCAGG chrV:2218997-2219077 3 8.18e-05 TA TGTCAATA ACCGCAGTCT chrI:1290476-1290556 55 8.18e-05 ACTTGGCCTA TGTCAATA AAAATACCAT chrIII:11947628-11947708 31 8.18e-05 TGAAATAGAA TGTCAATA GAAGAGGCGA chrI:13028606-13028686 48 8.18e-05 CTTCTTAACA TGTCAATA TTTACCCCTT chrI:6593482-6593562 48 8.18e-05 TGCGCATCAG TGTCAATA TTGACATTGA chrII:14967245-14967325 11 8.18e-05 CCGCGATCTT TGTCAATA TTTGGCTCCT chrII:8702077-8702157 55 9.90e-05 TTATTTACAC TGCAAACA ACTCACAGAA chrII:8735010-8735090 40 9.90e-05 GGTTCTTTCT TGCAAACA AAACCTAGTA chrX:2498063-2498143 58 1.18e-04 GTTGTATCAG AGTAAACA TGGGGGACCT chrIV:13865297-13865377 30 1.18e-04 TTTTTCACAA AGTAAACA TGGGAAACTG chrIV:13759517-13759597 14 1.18e-04 CGGCGATCTG AGTAAACA AACAAGAAGG chrII:9285078-9285158 69 1.43e-04 AATTTGTTTA TATAAACA GTGA chrIII:9664995-9665075 3 1.43e-04 TT TATAAACA AACACCCTTG chrV:20756763-20756843 53 1.43e-04 TGTTATTTGT TATAAaca cacacacaca chrI:13508781-13508861 7 1.63e-04 CCTGTG TGCAAATA TATGATCTAC chrIII:7317480-7317560 12 1.63e-04 ttcattcACA TGCAAATA CAAACATTGC chrX:5142581-5142661 17 1.63e-04 CATGCCGGGT TGCAAATA AACTTCCACA chrV:20753944-20754024 41 1.63e-04 CTCCTTCCCA TGCAAATA TTTGACAATT chrV:20745423-20745503 69 1.63e-04 GACAGTGCTG TGCAAATA AACT chrX:2698881-2698961 23 2.03e-04 GAGAGAGGGA AGTAAATA AGGAAAGCAG chrIV:8170408-8170488 21 2.03e-04 GCCAAAGTGT TGTACACA TACAGAGAGA chrV:12737864-12737944 23 2.03e-04 TATATTTAAA AGTAAATA TGAACGAACG chrIII:13187045-13187125 42 2.03e-04 CACCGAAAAA AGTAAATA TAGTGTGAGA chrI:6077412-6077492 69 2.03e-04 CTGTACCGAG AGTAAATA GAGG chrX:2700791-2700871 58 2.03e-04 CTCTCGCATT TGTACACA ATATGCGCGC chrIII:5233298-5233378 15 2.69e-04 TCTACTCTTG TGTACATA AAGGCCCTGG chrX:432593-432673 44 2.69e-04 AGGCGCGCAT TGTACATA CCTATGTTTG chrII:8451527-8451607 38 2.69e-04 TGTCTCTTTA TGTACATA GGCAAACTGC chrIII:1226444-1226524 1 2.69e-04 . TGTACATA CACAGAATAT chrIII:5980473-5980553 37 2.89e-04 gaagagcaaa cgtaaata aagatgaaga chrII:4002371-4002451 64 3.43e-04 TTTTCATTAG TATCAACA ACAGTGTTT chrIII:622911-622991 37 3.96e-04 GAACAAAATC AGTCAATA TTTACATGGT chrIII:8733450-8733530 53 3.96e-04 GACACTTTTT AGTCAATA TTGACATTAC chrIII:2294862-2294942 50 3.96e-04 TTGACTAGAC AGTCAATA TTTACCTTCT chrX:12181773-12181853 52 3.96e-04 TTGTCCGTTA AGTCAATA AGCATGCAAT chrIII:8719916-8719996 14 3.96e-04 TGACTCACTT TGTCCACA ACGCGCGCGG chrIII:3669652-3669732 16 4.53e-04 ATAAGCCTGT AGCAAACA ATAGTCTATG chrV:4800717-4800797 12 4.92e-04 CACTTCATTT TACAAACA CATAGACTGG chrX:3826300-3826380 45 4.92e-04 CACAATTACA TACAAACA TCTACACATA chrIV:14605259-14605339 19 4.92e-04 CAATACACCA TACAAACA TTTTGATCTT chrII:15219160-15219240 33 4.92e-04 TTGTGTGCTC TACAAACA TCCCGCGCTC chrII:12104675-12104755 33 5.34e-04 TGACACTCCG AATAAACA AAAAGGGCAT chrII:7183660-7183740 53 5.34e-04 CGTCACTTTT CGTCAATA TTGACTTTTC chrIII:3307590-3307670 35 5.34e-04 AGCAGAAGAA AATAAACA AACATTTCGG chrV:5850559-5850639 43 6.24e-04 Tacacgcaca cgcaaaca cacgaaacac chrII:6417064-6417144 24 6.24e-04 CTGAACGGTG CGCAAACA CGTACAGAAG chrV:10718557-10718637 34 6.24e-04 ACAAAGGTTA TACAAATA CAGGACGAGA chrIV:1881950-1882030 29 6.73e-04 GAGGAGGACA TATACACA GAGAAGAGTA chrX:9092020-9092100 46 6.73e-04 GTTTACTCTA TATACACA CACCCTTTCG chrII:8731989-8732069 50 6.73e-04 TGTGTGGAAA TATACACA AACAAGTGAC chrX:8658119-8658199 59 7.12e-04 CGACACCGAA CATAAACA TACACTCAGA chrIV:8002629-8002709 58 7.12e-04 ACAAAACTGT CATAAACA CTTTTTGGAG chrII:14684562-14684642 8 7.12e-04 CAACTAG CATAAaca catcacacac chrV:6480554-6480634 28 7.49e-04 ATCTATGACA CGCAAATA GTATCGTGAC chrX:14559675-14559755 38 7.49e-04 GACCAAAAGA AGTACATA CTGTTGGAAA chrV:19153426-19153506 11 1.00e-03 CCTCCTCAAA GGTAAATA CAGGTGTCTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTAAAYA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:16814181-16814261 2e-05 54_[+1]_18 chrX:6729768-6729848 2e-05 50_[+1]_22 chrIV:3232120-3232200 2e-05 32_[+1]_40 chrII:12456152-12456232 2e-05 40_[+1]_32 chrV:11207907-11207987 2e-05 56_[+1]_16 chrI:14902887-14902967 2e-05 16_[+1]_56 chrIII:9352758-9352838 2e-05 35_[+1]_37 chrI:1392934-1393014 2e-05 13_[+1]_59 chrV:19428049-19428129 2e-05 54_[+1]_18 chrX:10770177-10770257 2e-05 26_[+1]_46 chrX:12005980-12006060 2e-05 24_[+1]_48 chrIV:12048092-12048172 2e-05 64_[+1]_8 chrI:11091032-11091112 2e-05 40_[+1]_32 chrV:9673610-9673690 2e-05 54_[+1]_18 chrV:1570207-1570287 4.3e-05 54_[+1]_18 chrIII:5665454-5665534 4.3e-05 62_[+1]_10 chrI:6577197-6577277 4.3e-05 7_[+1]_65 chrII:6837198-6837278 4.3e-05 27_[+1]_45 chrX:7953859-7953939 4.3e-05 48_[+1]_24 chrIV:11694308-11694388 4.3e-05 52_[+1]_20 chrV:15497865-15497945 4.3e-05 71_[+1]_1 chrIII:7322144-7322224 4.3e-05 26_[+1]_46 chrX:2047170-2047250 4.3e-05 15_[+1]_57 chrX:13945219-13945299 4.3e-05 36_[+1]_36 chrX:16085250-16085330 4.3e-05 54_[+1]_18 chrII:4779896-4779976 4.3e-05 63_[+1]_9 chrIII:13530997-13531077 4.3e-05 16_[+1]_56 chrX:2368666-2368746 6.1e-05 39_[+1]_33 chrX:3317678-3317758 6.1e-05 44_[+1]_28 chrX:647797-647877 6.1e-05 16_[+1]_56 chrIV:10867539-10867619 6.1e-05 50_[+1]_22 chrX:16412164-16412244 6.1e-05 40_[+1]_32 chrIV:6576166-6576246 6.1e-05 50_[+1]_22 chrX:9602143-9602223 6.1e-05 60_[+1]_12 chrIV:4674465-4674545 6.1e-05 59_[+1]_13 chrIV:3720791-3720871 6.1e-05 34_[+1]_38 chrX:5781405-5781485 6.1e-05 40_[+1]_32 chrV:8796988-8797068 8.2e-05 49_[+1]_23 chrI:7548400-7548480 8.2e-05 61_[+1]_11 chrV:2218997-2219077 8.2e-05 2_[+1]_70 chrI:1290476-1290556 8.2e-05 54_[+1]_18 chrIII:11947628-11947708 8.2e-05 30_[+1]_42 chrI:13028606-13028686 8.2e-05 47_[+1]_25 chrI:6593482-6593562 8.2e-05 47_[+1]_25 chrII:14967245-14967325 8.2e-05 10_[+1]_62 chrII:8702077-8702157 9.9e-05 54_[+1]_18 chrII:8735010-8735090 9.9e-05 39_[+1]_33 chrX:2498063-2498143 0.00012 57_[+1]_15 chrIV:13865297-13865377 0.00012 29_[+1]_43 chrIV:13759517-13759597 0.00012 13_[+1]_59 chrII:9285078-9285158 0.00014 68_[+1]_4 chrIII:9664995-9665075 0.00014 2_[+1]_70 chrV:20756763-20756843 0.00014 52_[+1]_20 chrI:13508781-13508861 0.00016 6_[+1]_66 chrIII:7317480-7317560 0.00016 11_[+1]_61 chrX:5142581-5142661 0.00016 16_[+1]_56 chrV:20753944-20754024 0.00016 40_[+1]_32 chrV:20745423-20745503 0.00016 68_[+1]_4 chrX:2698881-2698961 0.0002 22_[+1]_50 chrIV:8170408-8170488 0.0002 20_[+1]_52 chrV:12737864-12737944 0.0002 22_[+1]_50 chrIII:13187045-13187125 0.0002 41_[+1]_31 chrI:6077412-6077492 0.0002 68_[+1]_4 chrX:2700791-2700871 0.0002 57_[+1]_15 chrIII:5233298-5233378 0.00027 14_[+1]_58 chrX:432593-432673 0.00027 43_[+1]_29 chrII:8451527-8451607 0.00027 37_[+1]_35 chrIII:1226444-1226524 0.00027 [+1]_72 chrIII:5980473-5980553 0.00029 36_[+1]_36 chrII:4002371-4002451 0.00034 63_[+1]_9 chrIII:622911-622991 0.0004 36_[+1]_36 chrIII:8733450-8733530 0.0004 52_[+1]_20 chrIII:2294862-2294942 0.0004 49_[+1]_23 chrX:12181773-12181853 0.0004 51_[+1]_21 chrIII:8719916-8719996 0.0004 13_[+1]_59 chrIII:3669652-3669732 0.00045 15_[+1]_57 chrV:4800717-4800797 0.00049 11_[+1]_61 chrX:3826300-3826380 0.00049 44_[+1]_28 chrIV:14605259-14605339 0.00049 18_[+1]_54 chrII:15219160-15219240 0.00049 32_[+1]_40 chrII:12104675-12104755 0.00053 32_[+1]_40 chrII:7183660-7183740 0.00053 52_[+1]_20 chrIII:3307590-3307670 0.00053 34_[+1]_38 chrV:5850559-5850639 0.00062 42_[+1]_30 chrII:6417064-6417144 0.00062 23_[+1]_49 chrV:10718557-10718637 0.00062 33_[+1]_39 chrIV:1881950-1882030 0.00067 28_[+1]_44 chrX:9092020-9092100 0.00067 45_[+1]_27 chrII:8731989-8732069 0.00067 49_[+1]_23 chrX:8658119-8658199 0.00071 58_[+1]_14 chrIV:8002629-8002709 0.00071 57_[+1]_15 chrII:14684562-14684642 0.00071 7_[+1]_65 chrV:6480554-6480634 0.00075 27_[+1]_45 chrX:14559675-14559755 0.00075 37_[+1]_35 chrV:19153426-19153506 0.001 10_[+1]_62 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTAAAYA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGTAAAYA width=8 seqs=95 chrX:16814181-16814261 ( 55) TGTAAACA 1 chrX:6729768-6729848 ( 51) TGTAAACA 1 chrIV:3232120-3232200 ( 33) TGTAAACA 1 chrII:12456152-12456232 ( 41) TGTAAACA 1 chrV:11207907-11207987 ( 57) TGTAAACA 1 chrI:14902887-14902967 ( 17) TGTAAACA 1 chrIII:9352758-9352838 ( 36) TGTAAACA 1 chrI:1392934-1393014 ( 14) TGTAAACA 1 chrV:19428049-19428129 ( 55) TGTAAACA 1 chrX:10770177-10770257 ( 27) TGTAAACA 1 chrX:12005980-12006060 ( 25) TGTAAACA 1 chrIV:12048092-12048172 ( 65) TGTAAACA 1 chrI:11091032-11091112 ( 41) TGTAAACA 1 chrV:9673610-9673690 ( 55) TGTAAACA 1 chrV:1570207-1570287 ( 55) TGTAAATA 1 chrIII:5665454-5665534 ( 63) TGTAAATA 1 chrI:6577197-6577277 ( 8) TGTAAATA 1 chrII:6837198-6837278 ( 28) TGTAAATA 1 chrX:7953859-7953939 ( 49) TGTAAATA 1 chrIV:11694308-11694388 ( 53) TGTAAATA 1 chrV:15497865-15497945 ( 72) TGTAAATA 1 chrIII:7322144-7322224 ( 27) TGTAAATA 1 chrX:2047170-2047250 ( 16) TGTAAATA 1 chrX:13945219-13945299 ( 37) TGTAAATA 1 chrX:16085250-16085330 ( 55) TGTAAATA 1 chrII:4779896-4779976 ( 64) TGTAAATA 1 chrIII:13530997-13531077 ( 17) TGTAAATA 1 chrX:2368666-2368746 ( 40) TGTCAACA 1 chrX:3317678-3317758 ( 45) TGTCAACA 1 chrX:647797-647877 ( 17) TGTCAACA 1 chrIV:10867539-10867619 ( 51) TGTCAACA 1 chrX:16412164-16412244 ( 41) TGTCAACA 1 chrIV:6576166-6576246 ( 51) TGTCAACA 1 chrX:9602143-9602223 ( 61) TGTCAACA 1 chrIV:4674465-4674545 ( 60) TGTCAACA 1 chrIV:3720791-3720871 ( 35) TGTCAACA 1 chrX:5781405-5781485 ( 41) TGTCAACA 1 chrV:8796988-8797068 ( 50) TGTCAATA 1 chrI:7548400-7548480 ( 62) TGTCAATA 1 chrV:2218997-2219077 ( 3) TGTCAATA 1 chrI:1290476-1290556 ( 55) TGTCAATA 1 chrIII:11947628-11947708 ( 31) TGTCAATA 1 chrI:13028606-13028686 ( 48) TGTCAATA 1 chrI:6593482-6593562 ( 48) TGTCAATA 1 chrII:14967245-14967325 ( 11) TGTCAATA 1 chrII:8702077-8702157 ( 55) TGCAAACA 1 chrII:8735010-8735090 ( 40) TGCAAACA 1 chrX:2498063-2498143 ( 58) AGTAAACA 1 chrIV:13865297-13865377 ( 30) AGTAAACA 1 chrIV:13759517-13759597 ( 14) AGTAAACA 1 chrII:9285078-9285158 ( 69) TATAAACA 1 chrIII:9664995-9665075 ( 3) TATAAACA 1 chrV:20756763-20756843 ( 53) TATAAACA 1 chrI:13508781-13508861 ( 7) TGCAAATA 1 chrIII:7317480-7317560 ( 12) TGCAAATA 1 chrX:5142581-5142661 ( 17) TGCAAATA 1 chrV:20753944-20754024 ( 41) TGCAAATA 1 chrV:20745423-20745503 ( 69) TGCAAATA 1 chrX:2698881-2698961 ( 23) AGTAAATA 1 chrIV:8170408-8170488 ( 21) TGTACACA 1 chrV:12737864-12737944 ( 23) AGTAAATA 1 chrIII:13187045-13187125 ( 42) AGTAAATA 1 chrI:6077412-6077492 ( 69) AGTAAATA 1 chrX:2700791-2700871 ( 58) TGTACACA 1 chrIII:5233298-5233378 ( 15) TGTACATA 1 chrX:432593-432673 ( 44) TGTACATA 1 chrII:8451527-8451607 ( 38) TGTACATA 1 chrIII:1226444-1226524 ( 1) TGTACATA 1 chrIII:5980473-5980553 ( 37) CGTAAATA 1 chrII:4002371-4002451 ( 64) TATCAACA 1 chrIII:622911-622991 ( 37) AGTCAATA 1 chrIII:8733450-8733530 ( 53) AGTCAATA 1 chrIII:2294862-2294942 ( 50) AGTCAATA 1 chrX:12181773-12181853 ( 52) AGTCAATA 1 chrIII:8719916-8719996 ( 14) TGTCCACA 1 chrIII:3669652-3669732 ( 16) AGCAAACA 1 chrV:4800717-4800797 ( 12) TACAAACA 1 chrX:3826300-3826380 ( 45) TACAAACA 1 chrIV:14605259-14605339 ( 19) TACAAACA 1 chrII:15219160-15219240 ( 33) TACAAACA 1 chrII:12104675-12104755 ( 33) AATAAACA 1 chrII:7183660-7183740 ( 53) CGTCAATA 1 chrIII:3307590-3307670 ( 35) AATAAACA 1 chrV:5850559-5850639 ( 43) CGCAAACA 1 chrII:6417064-6417144 ( 24) CGCAAACA 1 chrV:10718557-10718637 ( 34) TACAAATA 1 chrIV:1881950-1882030 ( 29) TATACACA 1 chrX:9092020-9092100 ( 46) TATACACA 1 chrII:8731989-8732069 ( 50) TATACACA 1 chrX:8658119-8658199 ( 59) CATAAACA 1 chrIV:8002629-8002709 ( 58) CATAAACA 1 chrII:14684562-14684642 ( 8) CATAAACA 1 chrV:6480554-6480634 ( 28) CGCAAATA 1 chrX:14559675-14559755 ( 38) AGTACATA 1 chrV:19153426-19153506 ( 11) GGTAAATA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTAAAYA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.01665 E= 5.1e-040 -76 -149 -439 144 -58 -1321 189 -1321 -1321 -49 -1321 160 146 16 -1321 -1321 173 -103 -1321 -1321 190 -1321 -1321 -1321 -1321 118 -1321 75 190 -1321 -1321 -1321 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTAAAYA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 95 E= 5.1e-040 0.157895 0.084211 0.010526 0.747368 0.178947 0.000000 0.821053 0.000000 0.000000 0.168421 0.000000 0.831579 0.736842 0.263158 0.000000 0.000000 0.884211 0.115789 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.536842 0.000000 0.463158 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTAAAYA MEME-1 regular expression -------------------------------------------------------------------------------- TGT[AC]AA[CT]A -------------------------------------------------------------------------------- Time 5.35 secs. ******************************************************************************** ******************************************************************************** MOTIF TGTTTRCW MEME-2 width = 8 sites = 103 llr = 709 E-value = 6.8e-023 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGTTTRCW MEME-2 Description -------------------------------------------------------------------------------- Simplified A :2:::514 pos.-specific C ::::::71 probability G :8:2:5:1 matrix T a:a8a:23 bits 2.2 2.0 * * 1.7 * * 1.5 * * * Relative 1.3 *** * Entropy 1.1 ****** (9.9 bits) 0.9 ******* 0.7 ******* 0.4 ******* 0.2 ******** 0.0 -------- Multilevel TGTTTGCA consensus A G ATT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTTTRCW MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIV:5360033-5360113 32 1.76e-05 TTATTGTCGG TGTTTGCA TAATAActca chrII:8985673-8985753 10 1.76e-05 TCCGGTCAT TGTTTGCA TTTGCTCAAC chrIII:11425612-11425692 22 1.76e-05 TAAATGTGCA TGTTTGCA CACTGGCGCA chrII:12104675-12104755 50 3.89e-05 AAAAAGGGCA TGTTTACA CACACATGGG chrX:6932257-6932337 33 3.89e-05 CTATTTGCCG TGTTTACA CACTGTATAA chrIII:13254318-13254398 23 3.89e-05 CTGTATATTC TGTTTACA CTGCCCCCTG chrX:11664343-11664423 2 3.89e-05 A TGTTTACA TGAGAATAAG chrV:7847850-7847930 27 3.89e-05 CATTCCGTCT TGTTTACA CCTACGGCAG chrIV:5565255-5565335 24 3.89e-05 GAGAAAAAGG TGTTTACA TTTCGAGGCG chrII:9186026-9186106 52 3.89e-05 TGGTACGCAC TGTTTACA TTCTATGGAA chrIV:11568727-11568807 15 3.89e-05 CTCCAATCCG TGTTTACA GACCTTGGAA chrIV:5603502-5603582 57 3.89e-05 TGTGTATGTT TGTTTACA TGTCGAATCG chrX:9100909-9100989 11 3.89e-05 CTTTCTTCAG TGTTTACA TTGCGTACTG chrIV:1657204-1657284 27 3.89e-05 CTTTTCGCGC TGTTTACA AATGGAGAGA chrIII:13000680-13000760 51 5.70e-05 TGCATGTATT TGTTTGCT TTTGAATGTA chrI:14320462-14320542 72 5.70e-05 GTTCCGCAAA TGTTTGCT A chrV:9440815-9440895 44 5.70e-05 GTGTCCGGTA TGTTTGCT CTCGCGCCGG chrI:9087257-9087337 4 5.70e-05 CCG TGTTTGCT CACACGCGGC chrX:17330694-17330774 32 5.70e-05 TCGTTCACCA TGTTTGCT CTGTTTGGAT chrI:7176762-7176842 67 5.70e-05 AATTGCGATT TGTTTGCT TTTCGT chrIII:13732879-13732959 67 5.70e-05 TCTCTTACAG TGTTTGCT TTCAGA chrIV:12048092-12048172 17 5.70e-05 TCTTTGCAAA TGTTTGCT TCCAAAAGTG chrIV:9368396-9368476 8 7.89e-05 ACTGTGT TGTTTACT GGTACAACAT chrII:4002371-4002451 47 7.89e-05 CGGCGTGGGC TGTTTACT TTTCATTAGT chrV:11675187-11675267 36 7.89e-05 TAAGAGGCCG TGTTTACT TTGGCTCGTC chrI:4977421-4977501 10 7.89e-05 TCAATGTTC TGTTTACT TCTGCCGACC chrV:13209705-13209785 40 7.89e-05 TGGAGAACAT TGTTTACT AGGTAACAGA chrX:9092020-9092100 35 7.89e-05 TCTCTCCTCC TGTTTACT CTATATACAC chrIV:9667217-9667297 5 1.09e-04 TATG TGTTTGCG CAAGTGGTGC chrII:7034219-7034299 59 1.09e-04 TATGTGTGGT TGTTTGCG TAAGTTACAG chrI:2974851-2974931 35 1.09e-04 AGGCATCGCG TGTTTGCG CCCGGCCCGT chrIII:12920041-12920121 69 1.09e-04 GGGGCTTGAC TGTTTGCC TACG chrII:2455005-2455085 31 1.09e-04 ATTGACAGTT TGTTTGCC GGCGGCGGGC chrX:432593-432673 56 1.09e-04 TACATACCTA TGTTTGCC ATTTTCTTTG chrIV:10867539-10867619 20 1.09e-04 ACTGTTGCGG TGTTTGCC GGCCACCGCG chrV:11950788-11950868 37 1.60e-04 CTCGTTCATT TGTTTACC TTTAATGTTT chrII:10136915-10136995 25 1.60e-04 CACACACTGG TGTTTACC TCTTTTTCTC chrII:11221891-11221971 10 1.60e-04 TACTTGACT TGTTTACC CATCACGTAC chrI:7714050-7714130 33 1.60e-04 CTGTTCTGCC TGTTTACC CAGATTTACA chrII:5398950-5399030 35 1.60e-04 GAATGGCGCA TGTTTACC AGTGAGTCGG chrX:9103178-9103258 8 1.60e-04 AACACTG TGTTTACC TTTTGCTCGT chrI:14948187-14948267 53 1.80e-04 tgtgagtgtg tgtttgta tgtTGACACA chrII:202141-202221 10 1.80e-04 ATGCAAGTT TGTTTGTA TTTCATATAT chrIII:908120-908200 20 1.97e-04 CAGAGAGCAC TGTGTACA CGAAGGAGTG chrI:14902887-14902967 25 1.97e-04 CATGTAAACA TGTGTACA CTTGCCGAGC chrIV:13169588-13169668 42 2.58e-04 TGTTGAGGTC TGTGTGCT CTGAAGAGCA chrV:19153426-19153506 46 2.58e-04 CCCCGCTATC TATTTGCA TACATCGTAA chrIV:14617663-14617743 35 2.58e-04 GTAGGTCAAA TATTTGCA CACCCCGCCT chrV:2218997-2219077 50 2.58e-04 GATTTTATTC TATTTGCA CTTTTGAACT chrII:15219160-15219240 24 2.58e-04 TGAGTGTGTT TGTGTGCT CTACAAACAT chrX:10770177-10770257 62 2.79e-04 TACCTAATTT TGTTTGTT TTATGCGAGA chrI:6712963-6713043 47 3.22e-04 TGTAAGAGTG TGTGTACT TTTGAGAGAG chrI:260297-260377 9 3.22e-04 ATGCTTAT TATTTACA CATTTGTGTG chrX:8658119-8658199 18 3.22e-04 TATGAACATT TATTTACA ACTAGACCTT chrIII:9446635-9446715 19 3.22e-04 TTTTTCGCTC TATTTACA ATTGAGACAC chrX:14559675-14559755 11 3.22e-04 AGCCAGCTGC TATTTACA AAAGACTCGG chrII:8702077-8702157 46 3.22e-04 CATTTTCGCT TATTTACA CTGCAAACAA chrII:9230706-9230786 48 3.22e-04 TATCGTCCCA TGTGTACT CACATTCTCT chrIII:3669652-3669732 52 3.22e-04 ACATCGTCTT TGTGTACT GGCGACAGGA chrV:9451653-9451733 29 3.22e-04 TTTCTATCTT TATTTACA TTTCCCGTTT chrIII:13530997-13531077 73 3.22e-04 AACAAGAGAG TATTTACA chrIV:10421457-10421537 9 3.94e-04 AATACAAC TGTGTGCG CACAATGCGC chrIII:517563-517643 7 4.55e-04 ACTCTT TGTTTGTC GTGATGTCGC chrIII:9352758-9352838 27 4.55e-04 ATTAGGCTCC TATTTACT TTGTAAACAG chrII:4648982-4649062 21 4.55e-04 TTTCTCCCAC TATTTACT GTCCTCCTGT chrX:9452233-9452313 15 4.55e-04 AAGTGTGCAC TGTTTGTG ATAGGGCGTC chrIII:710189-710269 68 4.55e-04 AATTGTTGTG TGTTTGTG CAAAT chrX:9602143-9602223 16 4.55e-04 CAAGTGCGTG TGTTTGTG TGTATGCACA chrII:6409862-6409942 18 4.55e-04 TCACACCGTA TGTTTGTC TAAAATGAAG chrV:14736333-14736413 54 5.05e-04 ACAGTATTTA TGTTTGAA CAGGGAATGA chrIV:3232120-3232200 62 5.05e-04 TGCGTGTGCT TGTTTGAA CTAACAGGGG chrIV:4852069-4852149 17 5.05e-04 GCATGTGCAC TGTTTGAA ATTTGAAGGG chrIV:7099518-7099598 48 5.63e-04 AGTGAAACAG TGTGTGTA ATGCACTTGG chrIV:9032718-9032798 59 5.63e-04 Cgtgtgcgtc tgtgtgta tgtgtctgag chrII:14043366-14043446 69 5.63e-04 ACACAgtgtg tgtgtgta tgtg chrI:7969382-7969462 45 5.63e-04 TTTGTCTCTT TGTGTGTA TGTGACAGAC chrIV:1375437-1375517 29 5.63e-04 TCCAGAGCTC TGTGTGTA TCTGCGTCTT chrX:2482769-2482849 45 5.63e-04 CCCGACGCAA TGTGTGTA CCTGCCATGC chrX:5781405-5781485 70 5.63e-04 CACGACTTTT TGTTTATC AAA chrII:8731463-8731543 57 6.24e-04 AAGAAGACAA TGTTTAAA TGTTCTCCAG chrX:16085250-16085330 7 6.24e-04 ACGTTT TATTTGCC TTTCAAACCC chrI:14325442-14325522 62 7.25e-04 ATTCCGTTCG TGTTTGAT GTATATTtgt chrV:11321874-11321954 33 7.25e-04 ACAATTGTTA TATTTACG TTAGAACGAA chrV:8964328-8964408 14 7.25e-04 TCAATAGTAG TATTTACG ATACGCGTTG chrI:5518852-5518932 29 7.25e-04 AGTTCCCGCA TATTTACC ATGCATATCT chrII:10203957-10204037 50 7.25e-04 CGACTGGCTT TGTTTGAT CAGGCAAATA chrIII:8297069-8297149 66 7.81e-04 CACGTGTATA TGTGTGTT GACATAA chrIII:5665454-5665534 47 7.81e-04 TACAGTGTGT TGTTGGCA CACAACACTG chrI:11673424-11673504 58 7.81e-04 TGTACATTTT TGTGTGTT ATACCTGAAC chrX:2498063-2498143 21 8.27e-04 AATTTATGTG TATGTACA TTCAAATACG chrIV:12999208-12999288 9 8.94e-04 ATCGCCCG TATTTATA TTATACATAT chrIV:5600473-5600553 37 8.94e-04 caacACGGGC TGTTGACA AACAAAAGAG chrIII:8354837-8354917 35 8.94e-04 TTCCCGTCCC TGTTGACA TAATTGTTCC chrX:5142581-5142661 40 8.94e-04 CCACACACAT TGTGTATT TATTCCGCAT chrX:9396502-9396582 34 9.86e-04 GCATTGCGCA TGTTTGAG CCCATTTCGT chrV:20756763-20756843 39 9.86e-04 ATTTTCTAAA TATTTGTT ATTTGTTATA chrII:8731989-8732069 38 1.04e-03 TCCTTTTCCG TGTGTGTG GAAATATACA chrV:7065666-7065746 47 1.14e-03 TGAGAGCATG TGTTGACT AACATATTGA chrIV:13865297-13865377 6 1.14e-03 TTCCA TGTTGACT TTGGAATTTT chrV:20753944-20754024 65 1.18e-03 AATTTCGCAG TGTGTATG TGATATCA chrI:4434036-4434116 32 1.22e-03 GCTCATTGTC TGTGTAAA GTACAAAAAC chrI:4420785-4420865 62 1.22e-03 CACAGATATG TATGTGCG AATGTAACAT chrIII:9358531-9358611 18 1.29e-03 AGCGCATTTC TATTTGTG AGAACCTAGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTTTRCW MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:5360033-5360113 1.8e-05 31_[+2]_41 chrII:8985673-8985753 1.8e-05 9_[+2]_63 chrIII:11425612-11425692 1.8e-05 21_[+2]_51 chrII:12104675-12104755 3.9e-05 49_[+2]_23 chrX:6932257-6932337 3.9e-05 32_[+2]_40 chrIII:13254318-13254398 3.9e-05 22_[+2]_50 chrX:11664343-11664423 3.9e-05 1_[+2]_71 chrV:7847850-7847930 3.9e-05 26_[+2]_46 chrIV:5565255-5565335 3.9e-05 23_[+2]_49 chrII:9186026-9186106 3.9e-05 51_[+2]_21 chrIV:11568727-11568807 3.9e-05 14_[+2]_58 chrIV:5603502-5603582 3.9e-05 56_[+2]_16 chrX:9100909-9100989 3.9e-05 10_[+2]_62 chrIV:1657204-1657284 3.9e-05 26_[+2]_46 chrIII:13000680-13000760 5.7e-05 50_[+2]_22 chrI:14320462-14320542 5.7e-05 71_[+2]_1 chrV:9440815-9440895 5.7e-05 43_[+2]_29 chrI:9087257-9087337 5.7e-05 3_[+2]_69 chrX:17330694-17330774 5.7e-05 31_[+2]_41 chrI:7176762-7176842 5.7e-05 66_[+2]_6 chrIII:13732879-13732959 5.7e-05 66_[+2]_6 chrIV:12048092-12048172 5.7e-05 16_[+2]_56 chrIV:9368396-9368476 7.9e-05 7_[+2]_65 chrII:4002371-4002451 7.9e-05 46_[+2]_26 chrV:11675187-11675267 7.9e-05 35_[+2]_37 chrI:4977421-4977501 7.9e-05 9_[+2]_63 chrV:13209705-13209785 7.9e-05 39_[+2]_33 chrX:9092020-9092100 7.9e-05 34_[+2]_38 chrIV:9667217-9667297 0.00011 4_[+2]_68 chrII:7034219-7034299 0.00011 58_[+2]_14 chrI:2974851-2974931 0.00011 34_[+2]_38 chrIII:12920041-12920121 0.00011 68_[+2]_4 chrII:2455005-2455085 0.00011 30_[+2]_42 chrX:432593-432673 0.00011 55_[+2]_17 chrIV:10867539-10867619 0.00011 19_[+2]_53 chrV:11950788-11950868 0.00016 36_[+2]_36 chrII:10136915-10136995 0.00016 24_[+2]_48 chrII:11221891-11221971 0.00016 9_[+2]_63 chrI:7714050-7714130 0.00016 32_[+2]_40 chrII:5398950-5399030 0.00016 34_[+2]_38 chrX:9103178-9103258 0.00016 7_[+2]_65 chrI:14948187-14948267 0.00018 52_[+2]_20 chrII:202141-202221 0.00018 9_[+2]_63 chrIII:908120-908200 0.0002 19_[+2]_53 chrI:14902887-14902967 0.0002 24_[+2]_48 chrIV:13169588-13169668 0.00026 41_[+2]_31 chrV:19153426-19153506 0.00026 45_[+2]_27 chrIV:14617663-14617743 0.00026 34_[+2]_38 chrV:2218997-2219077 0.00026 49_[+2]_23 chrII:15219160-15219240 0.00026 23_[+2]_49 chrX:10770177-10770257 0.00028 61_[+2]_11 chrI:6712963-6713043 0.00032 46_[+2]_26 chrI:260297-260377 0.00032 8_[+2]_64 chrX:8658119-8658199 0.00032 17_[+2]_55 chrIII:9446635-9446715 0.00032 18_[+2]_54 chrX:14559675-14559755 0.00032 10_[+2]_62 chrII:8702077-8702157 0.00032 45_[+2]_27 chrII:9230706-9230786 0.00032 47_[+2]_25 chrIII:3669652-3669732 0.00032 51_[+2]_21 chrV:9451653-9451733 0.00032 28_[+2]_44 chrIII:13530997-13531077 0.00032 72_[+2] chrIV:10421457-10421537 0.00039 8_[+2]_64 chrIII:517563-517643 0.00046 6_[+2]_66 chrIII:9352758-9352838 0.00046 26_[+2]_46 chrII:4648982-4649062 0.00046 20_[+2]_52 chrX:9452233-9452313 0.00046 14_[+2]_58 chrIII:710189-710269 0.00046 67_[+2]_5 chrX:9602143-9602223 0.00046 15_[+2]_57 chrII:6409862-6409942 0.00046 17_[+2]_55 chrV:14736333-14736413 0.0005 53_[+2]_19 chrIV:3232120-3232200 0.0005 61_[+2]_11 chrIV:4852069-4852149 0.0005 16_[+2]_56 chrIV:7099518-7099598 0.00056 47_[+2]_25 chrIV:9032718-9032798 0.00056 58_[+2]_14 chrII:14043366-14043446 0.00056 68_[+2]_4 chrI:7969382-7969462 0.00056 44_[+2]_28 chrIV:1375437-1375517 0.00056 28_[+2]_44 chrX:2482769-2482849 0.00056 44_[+2]_28 chrX:5781405-5781485 0.00056 69_[+2]_3 chrII:8731463-8731543 0.00062 56_[+2]_16 chrX:16085250-16085330 0.00062 6_[+2]_66 chrI:14325442-14325522 0.00073 61_[+2]_11 chrV:11321874-11321954 0.00073 32_[+2]_40 chrV:8964328-8964408 0.00073 13_[+2]_59 chrI:5518852-5518932 0.00073 28_[+2]_44 chrII:10203957-10204037 0.00073 49_[+2]_23 chrIII:8297069-8297149 0.00078 65_[+2]_7 chrIII:5665454-5665534 0.00078 46_[+2]_26 chrI:11673424-11673504 0.00078 57_[+2]_15 chrX:2498063-2498143 0.00083 20_[+2]_52 chrIV:12999208-12999288 0.00089 8_[+2]_64 chrIV:5600473-5600553 0.00089 36_[+2]_36 chrIII:8354837-8354917 0.00089 34_[+2]_38 chrX:5142581-5142661 0.00089 39_[+2]_33 chrX:9396502-9396582 0.00099 33_[+2]_39 chrV:20756763-20756843 0.00099 38_[+2]_34 chrII:8731989-8732069 0.001 37_[+2]_35 chrV:7065666-7065746 0.0011 46_[+2]_26 chrIV:13865297-13865377 0.0011 5_[+2]_67 chrV:20753944-20754024 0.0012 64_[+2]_8 chrI:4434036-4434116 0.0012 31_[+2]_41 chrI:4420785-4420865 0.0012 61_[+2]_11 chrIII:9358531-9358611 0.0013 17_[+2]_55 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTTTRCW MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGTTTRCW width=8 seqs=103 chrIV:5360033-5360113 ( 32) TGTTTGCA 1 chrII:8985673-8985753 ( 10) TGTTTGCA 1 chrIII:11425612-11425692 ( 22) TGTTTGCA 1 chrII:12104675-12104755 ( 50) TGTTTACA 1 chrX:6932257-6932337 ( 33) TGTTTACA 1 chrIII:13254318-13254398 ( 23) TGTTTACA 1 chrX:11664343-11664423 ( 2) TGTTTACA 1 chrV:7847850-7847930 ( 27) TGTTTACA 1 chrIV:5565255-5565335 ( 24) TGTTTACA 1 chrII:9186026-9186106 ( 52) TGTTTACA 1 chrIV:11568727-11568807 ( 15) TGTTTACA 1 chrIV:5603502-5603582 ( 57) TGTTTACA 1 chrX:9100909-9100989 ( 11) TGTTTACA 1 chrIV:1657204-1657284 ( 27) TGTTTACA 1 chrIII:13000680-13000760 ( 51) TGTTTGCT 1 chrI:14320462-14320542 ( 72) TGTTTGCT 1 chrV:9440815-9440895 ( 44) TGTTTGCT 1 chrI:9087257-9087337 ( 4) TGTTTGCT 1 chrX:17330694-17330774 ( 32) TGTTTGCT 1 chrI:7176762-7176842 ( 67) TGTTTGCT 1 chrIII:13732879-13732959 ( 67) TGTTTGCT 1 chrIV:12048092-12048172 ( 17) TGTTTGCT 1 chrIV:9368396-9368476 ( 8) TGTTTACT 1 chrII:4002371-4002451 ( 47) TGTTTACT 1 chrV:11675187-11675267 ( 36) TGTTTACT 1 chrI:4977421-4977501 ( 10) TGTTTACT 1 chrV:13209705-13209785 ( 40) TGTTTACT 1 chrX:9092020-9092100 ( 35) TGTTTACT 1 chrIV:9667217-9667297 ( 5) TGTTTGCG 1 chrII:7034219-7034299 ( 59) TGTTTGCG 1 chrI:2974851-2974931 ( 35) TGTTTGCG 1 chrIII:12920041-12920121 ( 69) TGTTTGCC 1 chrII:2455005-2455085 ( 31) TGTTTGCC 1 chrX:432593-432673 ( 56) TGTTTGCC 1 chrIV:10867539-10867619 ( 20) TGTTTGCC 1 chrV:11950788-11950868 ( 37) TGTTTACC 1 chrII:10136915-10136995 ( 25) TGTTTACC 1 chrII:11221891-11221971 ( 10) TGTTTACC 1 chrI:7714050-7714130 ( 33) TGTTTACC 1 chrII:5398950-5399030 ( 35) TGTTTACC 1 chrX:9103178-9103258 ( 8) TGTTTACC 1 chrI:14948187-14948267 ( 53) TGTTTGTA 1 chrII:202141-202221 ( 10) TGTTTGTA 1 chrIII:908120-908200 ( 20) TGTGTACA 1 chrI:14902887-14902967 ( 25) TGTGTACA 1 chrIV:13169588-13169668 ( 42) TGTGTGCT 1 chrV:19153426-19153506 ( 46) TATTTGCA 1 chrIV:14617663-14617743 ( 35) TATTTGCA 1 chrV:2218997-2219077 ( 50) TATTTGCA 1 chrII:15219160-15219240 ( 24) TGTGTGCT 1 chrX:10770177-10770257 ( 62) TGTTTGTT 1 chrI:6712963-6713043 ( 47) TGTGTACT 1 chrI:260297-260377 ( 9) TATTTACA 1 chrX:8658119-8658199 ( 18) TATTTACA 1 chrIII:9446635-9446715 ( 19) TATTTACA 1 chrX:14559675-14559755 ( 11) TATTTACA 1 chrII:8702077-8702157 ( 46) TATTTACA 1 chrII:9230706-9230786 ( 48) TGTGTACT 1 chrIII:3669652-3669732 ( 52) TGTGTACT 1 chrV:9451653-9451733 ( 29) TATTTACA 1 chrIII:13530997-13531077 ( 73) TATTTACA 1 chrIV:10421457-10421537 ( 9) TGTGTGCG 1 chrIII:517563-517643 ( 7) TGTTTGTC 1 chrIII:9352758-9352838 ( 27) TATTTACT 1 chrII:4648982-4649062 ( 21) TATTTACT 1 chrX:9452233-9452313 ( 15) TGTTTGTG 1 chrIII:710189-710269 ( 68) TGTTTGTG 1 chrX:9602143-9602223 ( 16) TGTTTGTG 1 chrII:6409862-6409942 ( 18) TGTTTGTC 1 chrV:14736333-14736413 ( 54) TGTTTGAA 1 chrIV:3232120-3232200 ( 62) TGTTTGAA 1 chrIV:4852069-4852149 ( 17) TGTTTGAA 1 chrIV:7099518-7099598 ( 48) TGTGTGTA 1 chrIV:9032718-9032798 ( 59) TGTGTGTA 1 chrII:14043366-14043446 ( 69) TGTGTGTA 1 chrI:7969382-7969462 ( 45) TGTGTGTA 1 chrIV:1375437-1375517 ( 29) TGTGTGTA 1 chrX:2482769-2482849 ( 45) TGTGTGTA 1 chrX:5781405-5781485 ( 70) TGTTTATC 1 chrII:8731463-8731543 ( 57) TGTTTAAA 1 chrX:16085250-16085330 ( 7) TATTTGCC 1 chrI:14325442-14325522 ( 62) TGTTTGAT 1 chrV:11321874-11321954 ( 33) TATTTACG 1 chrV:8964328-8964408 ( 14) TATTTACG 1 chrI:5518852-5518932 ( 29) TATTTACC 1 chrII:10203957-10204037 ( 50) TGTTTGAT 1 chrIII:8297069-8297149 ( 66) TGTGTGTT 1 chrIII:5665454-5665534 ( 47) TGTTGGCA 1 chrI:11673424-11673504 ( 58) TGTGTGTT 1 chrX:2498063-2498143 ( 21) TATGTACA 1 chrIV:12999208-12999288 ( 9) TATTTATA 1 chrIV:5600473-5600553 ( 37) TGTTGACA 1 chrIII:8354837-8354917 ( 35) TGTTGACA 1 chrX:5142581-5142661 ( 40) TGTGTATT 1 chrX:9396502-9396582 ( 34) TGTTTGAG 1 chrV:20756763-20756843 ( 39) TATTTGTT 1 chrII:8731989-8732069 ( 38) TGTGTGTG 1 chrV:7065666-7065746 ( 47) TGTTGACT 1 chrIV:13865297-13865377 ( 6) TGTTGACT 1 chrV:20753944-20754024 ( 65) TGTGTATG 1 chrI:4434036-4434116 ( 32) TGTGTAAA 1 chrI:4420785-4420865 ( 62) TATGTGCG 1 chrIII:9358531-9358611 ( 18) TATTTGTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTTTRCW MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 7.98401 E= 6.8e-023 -1333 -1333 -1333 186 -39 -1333 185 -1333 -1333 -1333 -1333 186 -1333 -1333 -5 151 -1333 -1333 -219 179 89 -1333 119 -1333 -178 157 -1333 -30 68 -70 -70 8 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTTTRCW MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 103 E= 6.8e-023 0.000000 0.000000 0.000000 1.000000 0.203883 0.000000 0.796117 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.213592 0.786408 0.000000 0.000000 0.048544 0.951456 0.495146 0.000000 0.504854 0.000000 0.077670 0.699029 0.000000 0.223301 0.427184 0.145631 0.135922 0.291262 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTTTRCW MEME-2 regular expression -------------------------------------------------------------------------------- T[GA]T[TG]T[GA][CT][AT] -------------------------------------------------------------------------------- Time 9.13 secs. ******************************************************************************** ******************************************************************************** MOTIF GAGAGASR MEME-3 width = 8 sites = 52 llr = 429 E-value = 1.3e-017 ******************************************************************************** -------------------------------------------------------------------------------- Motif GAGAGASR MEME-3 Description -------------------------------------------------------------------------------- Simplified A 2a:a2a23 pos.-specific C ::::::4: probability G 8:a:8:45 matrix T :::::::2 bits 2.2 * 2.0 *** * 1.7 *** * 1.5 ****** Relative 1.3 ****** Entropy 1.1 ****** (11.9 bits) 0.9 ****** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GAGAGAGG consensus CA sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGAGASR MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:2698881-2698961 13 1.00e-05 AGAGCCTTGA GAGAGAGG GAAGTAAATA chrX:15508133-15508213 2 1.00e-05 G GAGAGAGG GAGGTTTGTC chrIII:8136649-8136729 51 1.00e-05 ACTTGACCGA GAGAGAGG GAGAAAGAAA chrIV:7523884-7523964 61 1.00e-05 GTGTCAATTC GAGAGAGG TGTCAGGCTG chrV:20749190-20749270 11 1.00e-05 TCCTTCCTCC GAGAGAGG ACGTGCTCTA chrI:13499045-13499125 42 2.08e-05 ATGCAAATTA GAGAGACG CAGACACCCA chrX:11248231-11248311 46 2.08e-05 AGATATGGAT GAGAGACG CAGCGCGCGG chrIV:5600473-5600553 70 2.08e-05 GGAGGGGATA GAGAGACG CAG chrII:4971612-4971692 47 2.08e-05 GTGGAGAAGT GAGAGACG CCGACTGTTT chrIV:6500959-6501039 39 2.08e-05 GAGAAAGAGA GAGAGACG TACTCTCTTT chrIV:1657204-1657284 64 2.08e-05 CCTAGAGGCA GAGAGACG CAGACTAGA chrIII:1226444-1226524 35 2.08e-05 GTAGGTATTG GAGAGACG CAGACGGGCA chrII:4779896-4779976 6 2.08e-05 TAATT GAGAGACG CAGTCGCATT chrIII:13530997-13531077 39 2.08e-05 ACGAGAGACA GAGAGACG CAGACACCTG chrI:2974851-2974931 57 3.29e-05 GCCCGTTTCG GAGAGAGA ATTGCACAAG chrIII:13187045-13187125 58 3.29e-05 TATAGTGTGA GAGAGAGA GAGTAAGAGG chrIII:9358531-9358611 44 3.29e-05 GGAAGAGGGA GAGAGAGA GATAGAAACA chrIV:6576166-6576246 11 3.29e-05 gagacagaga gagagaga gacagagaaa chrV:13576055-13576135 28 3.29e-05 TACTATGAAG GAGAGAGA GTGACATACT chrIV:7099518-7099598 25 4.50e-05 TCTTGGATCG GAGAGAAG CAGACAGTGA chrIV:13865297-13865377 63 4.50e-05 GGGGCTGGTT GAGAGAAG GTTATATTGA chrIV:13169588-13169668 68 7.04e-05 CATGGCATCG GAGAGAGT ATGCG chrI:6712963-6713043 58 7.04e-05 GTGTACTTTT GAGAGAGT TTCGAGAAAA chrV:4800717-4800797 51 7.04e-05 TGGGGGAAAT GAGAGAGT TTCGTGCCGC chrIV:4852069-4852149 50 7.04e-05 GGGAGTGAGT GAGAGAGT GTCTACGCGA chrV:8445796-8445876 70 7.04e-05 GAGAATATAA GAGAGACA TAG chrI:13508781-13508861 38 7.04e-05 TACAGTGGCG GAGAGAGT AACAGAAGAA chrV:20745423-20745503 25 7.04e-05 GGGTGAGCAA GAGAGAGT CCATGTGATA chrIV:8170408-8170488 33 8.38e-05 TACACATACA GAGAGACT GTCGAAGTAC chrI:6958791-6958871 65 9.59e-05 AATCCGGAGA AAGAGAGG GCGCAAAA chrII:10510369-10510449 58 9.59e-05 AAGGGTGCGG AAGAGAGG AGACTGAGAA chrX:15520047-15520127 66 1.36e-04 AGGTAGGATG GAGAGAAA ACGGTAA chrI:5606908-5606988 7 1.36e-04 GAGACG AAGAGACG CAGAGAAAAG chrIII:5665454-5665534 19 1.36e-04 GAAAGTTTGG AAGAGACG CAGACAGTGT chrI:6412690-6412770 52 1.36e-04 AAGGTTTCCA GAGAGAAA TAAAGAGAAA chrV:2259936-2260016 61 1.36e-04 AGGGCAAATA GAGAGAAA ATTTGGACTT chrII:11393965-11394045 14 1.36e-04 CGGAGTACAG AAGAGACG CCGCGCGCGG chrIII:8733450-8733530 11 1.36e-04 GGGTGTAAGT GAGAGAAA AAGTGTAAGA chrIII:8491723-8491803 46 1.49e-04 AAGAGATTCA GAGAAACG GGTGTCGGTT chrI:4434036-4434116 13 1.49e-04 CAAAGATCTC GAGAAACG TGCTCATTGT chrII:7343827-7343907 29 1.49e-04 GGTCAAATAA GAGAAACG GCATATTCAA chrIII:622911-622991 20 1.49e-04 CTGCTGTGCA GAGAAACG AACAAAATCA chrV:12737864-12737944 54 1.64e-04 GAGAAAATCG GAGAGAAT GAATTAGCAG chrIII:5980473-5980553 59 2.08e-04 tgaagagatc gagaaaga tgtagaGACG chrX:11597926-11598006 44 2.08e-04 AAGATACACA GAGAAAGA GCTCATGGTA chrX:16412164-16412244 58 2.22e-04 AAGCAGCGGC GAGAAAAG AAGACAAACT chrV:8796988-8797068 4 2.53e-04 AAA AAGAGAGT ATTATACCTC chrII:8225049-8225129 17 2.53e-04 CGCGCGGAAG AAGAGAGT GTGAGAGCAA chrX:15879799-15879879 45 3.00e-04 CAAATTTGCA AAGAGACT TTTCCTCGCG chrX:6932257-6932337 69 3.31e-04 ATAGTAAGGC AAGAAAGG GAGA chrX:6729768-6729848 7 3.48e-04 GGTGGA AAGAGAAA TGTAAATGCG chrIV:5565255-5565335 14 3.82e-04 GGACAGAATG GAGAAAAA GGTGTTTACA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGAGASR MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:2698881-2698961 1e-05 12_[+3]_60 chrX:15508133-15508213 1e-05 1_[+3]_71 chrIII:8136649-8136729 1e-05 50_[+3]_22 chrIV:7523884-7523964 1e-05 60_[+3]_12 chrV:20749190-20749270 1e-05 10_[+3]_62 chrI:13499045-13499125 2.1e-05 41_[+3]_31 chrX:11248231-11248311 2.1e-05 45_[+3]_27 chrIV:5600473-5600553 2.1e-05 69_[+3]_3 chrII:4971612-4971692 2.1e-05 46_[+3]_26 chrIV:6500959-6501039 2.1e-05 38_[+3]_34 chrIV:1657204-1657284 2.1e-05 63_[+3]_9 chrIII:1226444-1226524 2.1e-05 34_[+3]_38 chrII:4779896-4779976 2.1e-05 5_[+3]_67 chrIII:13530997-13531077 2.1e-05 38_[+3]_34 chrI:2974851-2974931 3.3e-05 56_[+3]_16 chrIII:13187045-13187125 3.3e-05 57_[+3]_15 chrIII:9358531-9358611 3.3e-05 43_[+3]_29 chrIV:6576166-6576246 3.3e-05 10_[+3]_62 chrV:13576055-13576135 3.3e-05 27_[+3]_45 chrIV:7099518-7099598 4.5e-05 24_[+3]_48 chrIV:13865297-13865377 4.5e-05 62_[+3]_10 chrIV:13169588-13169668 7e-05 67_[+3]_5 chrI:6712963-6713043 7e-05 57_[+3]_15 chrV:4800717-4800797 7e-05 50_[+3]_22 chrIV:4852069-4852149 7e-05 49_[+3]_23 chrV:8445796-8445876 7e-05 69_[+3]_3 chrI:13508781-13508861 7e-05 37_[+3]_35 chrV:20745423-20745503 7e-05 24_[+3]_48 chrIV:8170408-8170488 8.4e-05 32_[+3]_40 chrI:6958791-6958871 9.6e-05 64_[+3]_8 chrII:10510369-10510449 9.6e-05 57_[+3]_15 chrX:15520047-15520127 0.00014 65_[+3]_7 chrI:5606908-5606988 0.00014 6_[+3]_66 chrIII:5665454-5665534 0.00014 18_[+3]_54 chrI:6412690-6412770 0.00014 51_[+3]_21 chrV:2259936-2260016 0.00014 60_[+3]_12 chrII:11393965-11394045 0.00014 13_[+3]_59 chrIII:8733450-8733530 0.00014 10_[+3]_62 chrIII:8491723-8491803 0.00015 45_[+3]_27 chrI:4434036-4434116 0.00015 12_[+3]_60 chrII:7343827-7343907 0.00015 28_[+3]_44 chrIII:622911-622991 0.00015 19_[+3]_53 chrV:12737864-12737944 0.00016 53_[+3]_19 chrIII:5980473-5980553 0.00021 58_[+3]_14 chrX:11597926-11598006 0.00021 43_[+3]_29 chrX:16412164-16412244 0.00022 57_[+3]_15 chrV:8796988-8797068 0.00025 3_[+3]_69 chrII:8225049-8225129 0.00025 16_[+3]_56 chrX:15879799-15879879 0.0003 44_[+3]_28 chrX:6932257-6932337 0.00033 68_[+3]_4 chrX:6729768-6729848 0.00035 6_[+3]_66 chrIV:5565255-5565335 0.00038 13_[+3]_59 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGAGASR MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GAGAGASR width=8 seqs=52 chrX:2698881-2698961 ( 13) GAGAGAGG 1 chrX:15508133-15508213 ( 2) GAGAGAGG 1 chrIII:8136649-8136729 ( 51) GAGAGAGG 1 chrIV:7523884-7523964 ( 61) GAGAGAGG 1 chrV:20749190-20749270 ( 11) GAGAGAGG 1 chrI:13499045-13499125 ( 42) GAGAGACG 1 chrX:11248231-11248311 ( 46) GAGAGACG 1 chrIV:5600473-5600553 ( 70) GAGAGACG 1 chrII:4971612-4971692 ( 47) GAGAGACG 1 chrIV:6500959-6501039 ( 39) GAGAGACG 1 chrIV:1657204-1657284 ( 64) GAGAGACG 1 chrIII:1226444-1226524 ( 35) GAGAGACG 1 chrII:4779896-4779976 ( 6) GAGAGACG 1 chrIII:13530997-13531077 ( 39) GAGAGACG 1 chrI:2974851-2974931 ( 57) GAGAGAGA 1 chrIII:13187045-13187125 ( 58) GAGAGAGA 1 chrIII:9358531-9358611 ( 44) GAGAGAGA 1 chrIV:6576166-6576246 ( 11) GAGAGAGA 1 chrV:13576055-13576135 ( 28) GAGAGAGA 1 chrIV:7099518-7099598 ( 25) GAGAGAAG 1 chrIV:13865297-13865377 ( 63) GAGAGAAG 1 chrIV:13169588-13169668 ( 68) GAGAGAGT 1 chrI:6712963-6713043 ( 58) GAGAGAGT 1 chrV:4800717-4800797 ( 51) GAGAGAGT 1 chrIV:4852069-4852149 ( 50) GAGAGAGT 1 chrV:8445796-8445876 ( 70) GAGAGACA 1 chrI:13508781-13508861 ( 38) GAGAGAGT 1 chrV:20745423-20745503 ( 25) GAGAGAGT 1 chrIV:8170408-8170488 ( 33) GAGAGACT 1 chrI:6958791-6958871 ( 65) AAGAGAGG 1 chrII:10510369-10510449 ( 58) AAGAGAGG 1 chrX:15520047-15520127 ( 66) GAGAGAAA 1 chrI:5606908-5606988 ( 7) AAGAGACG 1 chrIII:5665454-5665534 ( 19) AAGAGACG 1 chrI:6412690-6412770 ( 52) GAGAGAAA 1 chrV:2259936-2260016 ( 61) GAGAGAAA 1 chrII:11393965-11394045 ( 14) AAGAGACG 1 chrIII:8733450-8733530 ( 11) GAGAGAAA 1 chrIII:8491723-8491803 ( 46) GAGAAACG 1 chrI:4434036-4434116 ( 13) GAGAAACG 1 chrII:7343827-7343907 ( 29) GAGAAACG 1 chrIII:622911-622991 ( 20) GAGAAACG 1 chrV:12737864-12737944 ( 54) GAGAGAAT 1 chrIII:5980473-5980553 ( 59) GAGAAAGA 1 chrX:11597926-11598006 ( 44) GAGAAAGA 1 chrX:16412164-16412244 ( 58) GAGAAAAG 1 chrV:8796988-8797068 ( 4) AAGAGAGT 1 chrII:8225049-8225129 ( 17) AAGAGAGT 1 chrX:15879799-15879879 ( 45) AAGAGACT 1 chrX:6932257-6932337 ( 69) AAGAAAGG 1 chrX:6729768-6729848 ( 7) AAGAGAAA 1 chrIV:5565255-5565335 ( 14) GAGAAAAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGAGASR MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.5697 E= 1.3e-017 -47 -1234 187 -1234 190 -1234 -1234 -1234 -1234 -1234 217 -1234 190 -1234 -1234 -1234 -63 -1234 190 -1234 190 -1234 -1234 -1234 -47 63 100 -1234 1 -1234 123 -38 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGAGASR MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 52 E= 1.3e-017 0.192308 0.000000 0.807692 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.173077 0.000000 0.826923 0.000000 1.000000 0.000000 0.000000 0.000000 0.192308 0.365385 0.442308 0.000000 0.269231 0.000000 0.519231 0.211538 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGAGASR MEME-3 regular expression -------------------------------------------------------------------------------- GAGAGA[GC][GAT] -------------------------------------------------------------------------------- Time 12.87 secs. ******************************************************************************** ******************************************************************************** MOTIF SASACACW MEME-4 width = 8 sites = 60 llr = 456 E-value = 1.0e-008 ******************************************************************************** -------------------------------------------------------------------------------- Motif SASACACW MEME-4 Description -------------------------------------------------------------------------------- Simplified A :a:a:8:6 pos.-specific C 6:5:a:8: probability G 4:3::22: matrix T ::2::::4 bits 2.2 * 2.0 ** 1.7 * ** 1.5 * ** Relative 1.3 * ** * Entropy 1.1 ** **** (11.0 bits) 0.9 ** ***** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CACACACA consensus G G GGT sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SASACACW MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:2698881-2698961 65 1.58e-05 AAGAGACACG CACACACA TAAACGGC chrI:7548400-7548480 9 1.58e-05 acaactca cacacaca catacgctca chrV:5850559-5850639 71 1.58e-05 cacatacaca cacacaca AT chrX:2368666-2368746 2 1.58e-05 a cacacaca cTATCGATCC chrII:2195697-2195777 73 1.58e-05 tgtatgtgGA CACACACA chrI:4434036-4434116 72 1.58e-05 GATCGGAGca cacacaca c chrI:14902887-14902967 42 1.58e-05 ACTTGCCGAG CACACACA TATGTGTAAG chrV:19496605-19496685 46 1.58e-05 cacacacaca cacacaca cacCTCCCGC chrIII:9664995-9665075 28 1.58e-05 TTGAGACGCA CACACACA CACCCTTACG chrIII:11947628-11947708 55 1.58e-05 GCGAAACATA CACACACA CGGACACACT chrIV:14605259-14605339 66 1.58e-05 AGAAGGGCCA CACACACA CGGCGAA chrIII:8719916-8719996 48 1.58e-05 CTTGTTGCCA CACACACA CTGTGATGAA chrV:20756763-20756843 65 1.58e-05 TAAacacaca cacacaca cacaTTTT chrX:5142581-5142661 31 1.58e-05 AATAAACTTC CACACACA TTGTGTATTT chrII:14684562-14684642 19 1.58e-05 ATAAacacat cacacaca ctcacactca chrV:20068548-20068628 24 3.05e-05 TTGGGACAGA GACACACA GCTACAGTAC chrV:6480554-6480634 43 3.05e-05 ATAGTATCGT GACACACA TTTGCGCATA chrX:16332033-16332113 57 4.68e-05 AACAGTCTCT CACACACT CACTCTCTCT chrII:10136915-10136995 15 4.68e-05 CTAGGAGCAA CACACACT GGTGTTTACC chrI:7969382-7969462 58 6.15e-05 GTGTATGTGA CAGACACA CTGCACAAAC chrV:19428049-19428129 19 6.15e-05 GGcacaagca cagacaca tactcaggta chrIII:9446635-9446715 30 9.06e-05 ATTTACAATT GAGACACA CCGCATAAGA chrI:6151607-6151687 71 1.04e-04 TTATGCACAA CACACGCA CT chrII:10549455-10549535 71 1.52e-04 CGCGGACGCA CATACACA AG chrX:7953859-7953939 22 1.52e-04 CGCAGTACAC CACACAGA GCGTCTCAGA chrI:11091032-11091112 67 1.52e-04 ACTCTACATA CATACACA GAGATT chrIII:908120-908200 50 1.64e-04 AAGATCAGCA GACACGCA GATATCCCAA chrIII:12178286-12178366 59 2.09e-04 CCCCCAAGTG GACACAGA AAGAGCGATG chrX:11597926-11598006 36 2.09e-04 AACAGTCCAA GATACACA GAGAAAGAGC chrX:2047170-2047250 64 2.09e-04 AAGCAGGCTC GATACACA TGGCAATAT chrIII:1226444-1226524 55 2.09e-04 GACGGGCAAA GATACACA CTGTATACAG chrII:4779896-4779976 40 2.09e-04 AGTGATGGGG GAGACACT TGAGACTAAC chrIII:558953-559033 29 2.23e-04 CTCAACTCCT CACACGCT CTTCTCACTC chrII:4693356-4693436 22 2.69e-04 TATACCATGC CACACAGT CTAGTTATTA chrII:14043366-14043446 58 2.69e-04 GGGGTTTGAG CACACAgt gtgtgtgtgt chrX:3826300-3826380 59 2.69e-04 AACATCTACA CATACACT TTCCCCGTTG chrV:9673610-9673690 38 2.69e-04 AGCACAGTTG CATACACT TTATGCGGGT chrII:8735010-8735090 72 2.69e-04 TTCACTTTAA CATACACT T chrX:3307078-3307158 17 2.96e-04 CTACTGTGGG GACACGCT TCGTGAACCT chrII:2455005-2455085 50 3.39e-04 GCGGCGGGCC GACACAGT AGTTGATGAC chrIII:95127-95207 50 3.39e-04 GACTATGTAG GAGACGCA GAGAACAAGA chrIII:5980473-5980553 71 3.39e-04 gaaagatgta gaGACGCA GA chrII:6837198-6837278 38 3.39e-04 TGTAAATATT GACACAGT TTTAGTGGGT chrIII:13254318-13254398 43 3.39e-04 GCCCCCTGTA GAGACGCA GAGATGGAAA chrIV:4852069-4852149 70 3.39e-04 CTACGCGATG GAGACGCA GGA chrX:11664343-11664423 50 3.39e-04 TTGTGCCGCC GACACAGT CGGGAAAGAT chrV:2259936-2260016 34 3.39e-04 GGGTTGTTCA GAGACGCA GGTAGACAAA chrII:11221891-11221971 58 3.39e-04 GAGCCCAACG GAGACGCA GACTGGCTAG chrIV:6576166-6576246 1 3.52e-04 . gagacaga gagagagaga chrIV:9368396-9368476 52 3.92e-04 TCTTTGAACA CAGACGCT CCCTCCTCTC chrIV:7099518-7099598 33 4.23e-04 CGGAGAGAAG CAGACAGT GAAACAGTGT chrIII:5665454-5665534 27 4.23e-04 GGAAGAGACG CAGACAGT GTTACAGTGT chrV:20745423-20745503 57 4.23e-04 GAGAGTGTGC CAGACAGT GCTGTGCAAA chrII:8899539-8899619 56 4.61e-04 GAGAAATTAG GAGACGCT GACTGAAACG chrV:8964328-8964408 70 4.90e-04 ACGTTAAAGA GATACAGA GAA chrII:4971612-4971692 29 4.90e-04 GATGCACCAT GAGACAGT GTGGAGAAGT chrIV:10811575-10811655 31 5.19e-04 CATTTCTCTC CATACGCT GCGCCTCTCC chrIV:12999208-12999288 30 5.48e-04 TACATATATA CATACAGT GGCGGCCCGT chrX:17330694-17330774 52 5.74e-04 GTTTGGATAA GATACGCT CTCTTCCCGT chrIII:13000680-13000760 28 6.80e-04 GAAAGTCATC CCCACACA ACCGATGCAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SASACACW MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:2698881-2698961 1.6e-05 64_[+4]_8 chrI:7548400-7548480 1.6e-05 8_[+4]_64 chrV:5850559-5850639 1.6e-05 70_[+4]_2 chrX:2368666-2368746 1.6e-05 1_[+4]_71 chrII:2195697-2195777 1.6e-05 72_[+4] chrI:4434036-4434116 1.6e-05 71_[+4]_1 chrI:14902887-14902967 1.6e-05 41_[+4]_31 chrV:19496605-19496685 1.6e-05 45_[+4]_27 chrIII:9664995-9665075 1.6e-05 27_[+4]_45 chrIII:11947628-11947708 1.6e-05 54_[+4]_18 chrIV:14605259-14605339 1.6e-05 65_[+4]_7 chrIII:8719916-8719996 1.6e-05 47_[+4]_25 chrV:20756763-20756843 1.6e-05 64_[+4]_8 chrX:5142581-5142661 1.6e-05 30_[+4]_42 chrII:14684562-14684642 1.6e-05 18_[+4]_54 chrV:20068548-20068628 3.1e-05 23_[+4]_49 chrV:6480554-6480634 3.1e-05 42_[+4]_30 chrX:16332033-16332113 4.7e-05 56_[+4]_16 chrII:10136915-10136995 4.7e-05 14_[+4]_58 chrI:7969382-7969462 6.2e-05 57_[+4]_15 chrV:19428049-19428129 6.2e-05 18_[+4]_54 chrIII:9446635-9446715 9.1e-05 29_[+4]_43 chrI:6151607-6151687 0.0001 70_[+4]_2 chrII:10549455-10549535 0.00015 70_[+4]_2 chrX:7953859-7953939 0.00015 21_[+4]_51 chrI:11091032-11091112 0.00015 66_[+4]_6 chrIII:908120-908200 0.00016 49_[+4]_23 chrIII:12178286-12178366 0.00021 58_[+4]_14 chrX:11597926-11598006 0.00021 35_[+4]_37 chrX:2047170-2047250 0.00021 63_[+4]_9 chrIII:1226444-1226524 0.00021 54_[+4]_18 chrII:4779896-4779976 0.00021 39_[+4]_33 chrIII:558953-559033 0.00022 28_[+4]_44 chrII:4693356-4693436 0.00027 21_[+4]_51 chrII:14043366-14043446 0.00027 57_[+4]_15 chrX:3826300-3826380 0.00027 58_[+4]_14 chrV:9673610-9673690 0.00027 37_[+4]_35 chrII:8735010-8735090 0.00027 71_[+4]_1 chrX:3307078-3307158 0.0003 16_[+4]_56 chrII:2455005-2455085 0.00034 49_[+4]_23 chrIII:95127-95207 0.00034 49_[+4]_23 chrIII:5980473-5980553 0.00034 70_[+4]_2 chrII:6837198-6837278 0.00034 37_[+4]_35 chrIII:13254318-13254398 0.00034 42_[+4]_30 chrIV:4852069-4852149 0.00034 69_[+4]_3 chrX:11664343-11664423 0.00034 49_[+4]_23 chrV:2259936-2260016 0.00034 33_[+4]_39 chrII:11221891-11221971 0.00034 57_[+4]_15 chrIV:6576166-6576246 0.00035 [+4]_72 chrIV:9368396-9368476 0.00039 51_[+4]_21 chrIV:7099518-7099598 0.00042 32_[+4]_40 chrIII:5665454-5665534 0.00042 26_[+4]_46 chrV:20745423-20745503 0.00042 56_[+4]_16 chrII:8899539-8899619 0.00046 55_[+4]_17 chrV:8964328-8964408 0.00049 69_[+4]_3 chrII:4971612-4971692 0.00049 28_[+4]_44 chrIV:10811575-10811655 0.00052 30_[+4]_42 chrIV:12999208-12999288 0.00055 29_[+4]_43 chrX:17330694-17330774 0.00057 51_[+4]_21 chrIII:13000680-13000760 0.00068 27_[+4]_45 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SASACACW MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF SASACACW width=8 seqs=60 chrX:2698881-2698961 ( 65) CACACACA 1 chrI:7548400-7548480 ( 9) CACACACA 1 chrV:5850559-5850639 ( 71) CACACACA 1 chrX:2368666-2368746 ( 2) CACACACA 1 chrII:2195697-2195777 ( 73) CACACACA 1 chrI:4434036-4434116 ( 72) CACACACA 1 chrI:14902887-14902967 ( 42) CACACACA 1 chrV:19496605-19496685 ( 46) CACACACA 1 chrIII:9664995-9665075 ( 28) CACACACA 1 chrIII:11947628-11947708 ( 55) CACACACA 1 chrIV:14605259-14605339 ( 66) CACACACA 1 chrIII:8719916-8719996 ( 48) CACACACA 1 chrV:20756763-20756843 ( 65) CACACACA 1 chrX:5142581-5142661 ( 31) CACACACA 1 chrII:14684562-14684642 ( 19) CACACACA 1 chrV:20068548-20068628 ( 24) GACACACA 1 chrV:6480554-6480634 ( 43) GACACACA 1 chrX:16332033-16332113 ( 57) CACACACT 1 chrII:10136915-10136995 ( 15) CACACACT 1 chrI:7969382-7969462 ( 58) CAGACACA 1 chrV:19428049-19428129 ( 19) CAGACACA 1 chrIII:9446635-9446715 ( 30) GAGACACA 1 chrI:6151607-6151687 ( 71) CACACGCA 1 chrII:10549455-10549535 ( 71) CATACACA 1 chrX:7953859-7953939 ( 22) CACACAGA 1 chrI:11091032-11091112 ( 67) CATACACA 1 chrIII:908120-908200 ( 50) GACACGCA 1 chrIII:12178286-12178366 ( 59) GACACAGA 1 chrX:11597926-11598006 ( 36) GATACACA 1 chrX:2047170-2047250 ( 64) GATACACA 1 chrIII:1226444-1226524 ( 55) GATACACA 1 chrII:4779896-4779976 ( 40) GAGACACT 1 chrIII:558953-559033 ( 29) CACACGCT 1 chrII:4693356-4693436 ( 22) CACACAGT 1 chrII:14043366-14043446 ( 58) CACACAGT 1 chrX:3826300-3826380 ( 59) CATACACT 1 chrV:9673610-9673690 ( 38) CATACACT 1 chrII:8735010-8735090 ( 72) CATACACT 1 chrX:3307078-3307158 ( 17) GACACGCT 1 chrII:2455005-2455085 ( 50) GACACAGT 1 chrIII:95127-95207 ( 50) GAGACGCA 1 chrIII:5980473-5980553 ( 71) GAGACGCA 1 chrII:6837198-6837278 ( 38) GACACAGT 1 chrIII:13254318-13254398 ( 43) GAGACGCA 1 chrIV:4852069-4852149 ( 70) GAGACGCA 1 chrX:11664343-11664423 ( 50) GACACAGT 1 chrV:2259936-2260016 ( 34) GAGACGCA 1 chrII:11221891-11221971 ( 58) GAGACGCA 1 chrIV:6576166-6576246 ( 1) GAGACAGA 1 chrIV:9368396-9368476 ( 52) CAGACGCT 1 chrIV:7099518-7099598 ( 33) CAGACAGT 1 chrIII:5665454-5665534 ( 27) CAGACAGT 1 chrV:20745423-20745503 ( 57) CAGACAGT 1 chrII:8899539-8899619 ( 56) GAGACGCT 1 chrV:8964328-8964408 ( 70) GATACAGA 1 chrII:4971612-4971692 ( 29) GAGACAGT 1 chrIV:10811575-10811655 ( 31) CATACGCT 1 chrIV:12999208-12999288 ( 30) CATACAGT 1 chrX:17330694-17330774 ( 52) GATACGCT 1 chrIII:13000680-13000760 ( 28) CCCACACA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SASACACW MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.52138 E= 1.0e-008 -1255 135 85 -1255 188 -382 -1255 -1255 -1255 113 36 -46 190 -1255 -1255 -1255 -1255 208 -1255 -1255 152 -1255 8 -1255 -1255 170 8 -1255 125 -1255 -1255 41 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SASACACW MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 60 E= 1.0e-008 0.000000 0.600000 0.400000 0.000000 0.983333 0.016667 0.000000 0.000000 0.000000 0.516667 0.283333 0.200000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.766667 0.000000 0.233333 0.000000 0.000000 0.766667 0.233333 0.000000 0.633333 0.000000 0.000000 0.366667 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SASACACW MEME-4 regular expression -------------------------------------------------------------------------------- [CG]A[CGT]AC[AG][CG][AT] -------------------------------------------------------------------------------- Time 16.39 secs. ******************************************************************************** ******************************************************************************** MOTIF CTGCGTCT MEME-5 width = 8 sites = 12 llr = 135 E-value = 2.1e-004 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTGCGTCT MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C a::a::a: probability G ::a:a::: matrix T :a:::a:a bits 2.2 * *** * 2.0 ******** 1.7 ******** 1.5 ******** Relative 1.3 ******** Entropy 1.1 ******** (16.2 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CTGCGTCT consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCGTCT MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrI:6945731-6945811 27 1.34e-05 GTTCAACTTC CTGCGTCT CTCGTGTTTT chrI:14320462-14320542 8 1.34e-05 TGTAGGT CTGCGTCT CTTGGGATCA chrIV:2785192-2785272 44 1.34e-05 CTTAATAtct ctgcgtct ctcactctct chrI:6882075-6882155 44 1.34e-05 CTTTTTAAGT CTGCGTCT CACTGAACTT chrII:7623603-7623683 12 1.34e-05 CCGAGACATT CTGCGTCT CTACAACTCA chrII:6417064-6417144 54 1.34e-05 GCGAGCTTCT CTGCGTCT ATAAAATCAC chrV:15497865-15497945 55 1.34e-05 GTCGTATGCT CTGCGTCT CTCCATGTAT chrIV:1375437-1375517 38 1.34e-05 CTGTGTGTAT CTGCGTCT TGACCATTCC chrV:20752801-20752881 46 1.34e-05 TCTCGTGTTA CTGCGTCT CTATGTCCAT chrIV:12048092-12048172 51 1.34e-05 CCTACAATAC CTGCGTCT CAAAAATGTA chrV:20749190-20749270 51 1.34e-05 ACATTTTCTT CTGCGTCT CTTTGACCCA chrII:14967245-14967325 40 1.34e-05 CTCTCGCCGT CTGCGTCT CCTACGTTCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCGTCT MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:6945731-6945811 1.3e-05 26_[+5]_46 chrI:14320462-14320542 1.3e-05 7_[+5]_65 chrIV:2785192-2785272 1.3e-05 43_[+5]_29 chrI:6882075-6882155 1.3e-05 43_[+5]_29 chrII:7623603-7623683 1.3e-05 11_[+5]_61 chrII:6417064-6417144 1.3e-05 53_[+5]_19 chrV:15497865-15497945 1.3e-05 54_[+5]_18 chrIV:1375437-1375517 1.3e-05 37_[+5]_35 chrV:20752801-20752881 1.3e-05 45_[+5]_27 chrIV:12048092-12048172 1.3e-05 50_[+5]_22 chrV:20749190-20749270 1.3e-05 50_[+5]_22 chrII:14967245-14967325 1.3e-05 39_[+5]_33 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCGTCT MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTGCGTCT width=8 seqs=12 chrI:6945731-6945811 ( 27) CTGCGTCT 1 chrI:14320462-14320542 ( 8) CTGCGTCT 1 chrIV:2785192-2785272 ( 44) CTGCGTCT 1 chrI:6882075-6882155 ( 44) CTGCGTCT 1 chrII:7623603-7623683 ( 12) CTGCGTCT 1 chrII:6417064-6417144 ( 54) CTGCGTCT 1 chrV:15497865-15497945 ( 55) CTGCGTCT 1 chrIV:1375437-1375517 ( 38) CTGCGTCT 1 chrV:20752801-20752881 ( 46) CTGCGTCT 1 chrIV:12048092-12048172 ( 51) CTGCGTCT 1 chrV:20749190-20749270 ( 51) CTGCGTCT 1 chrII:14967245-14967325 ( 40) CTGCGTCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCGTCT MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.2284 E= 2.1e-004 -1023 208 -1023 -1023 -1023 -1023 -1023 186 -1023 -1023 217 -1023 -1023 208 -1023 -1023 -1023 -1023 217 -1023 -1023 -1023 -1023 186 -1023 208 -1023 -1023 -1023 -1023 -1023 186 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCGTCT MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 12 E= 2.1e-004 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCGTCT MEME-5 regular expression -------------------------------------------------------------------------------- CTGCGTCT -------------------------------------------------------------------------------- Time 19.75 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:20745423-20745503 9.34e-04 24_[+3(7.04e-05)]_48 chrIII:13530997-13531077 2.10e-05 16_[+1(4.34e-05)]_6_[+3(7.04e-05)]_\ [+3(2.08e-05)]_34 chrII:14684562-14684642 2.76e-02 18_[+4(1.58e-05)]_12_[+4(4.68e-05)]_\ 34 chrV:20753944-20754024 9.76e-02 80 chrII:14967245-14967325 1.49e-03 10_[+1(8.18e-05)]_21_[+5(1.34e-05)]_\ 33 chrII:4779896-4779976 1.21e-04 5_[+3(2.08e-05)]_50_[+1(4.34e-05)]_\ 9 chrX:5142581-5142661 5.01e-04 30_[+4(1.58e-05)]_42 chrV:20756763-20756843 1.16e-03 58_[+4(1.58e-05)]_[+4(1.58e-05)]_6 chrI:6593482-6593562 2.55e-02 47_[+1(8.18e-05)]_25 chrII:8732498-8732578 5.21e-01 80 chrII:8735010-8735090 4.63e-02 39_[+1(9.90e-05)]_33 chrV:9451653-9451733 5.43e-01 80 chrX:16085250-16085330 7.80e-03 54_[+1(4.34e-05)]_18 chrII:8731463-8731543 2.41e-01 80 chrX:5781405-5781485 7.65e-03 40_[+1(6.11e-05)]_32 chrX:13945219-13945299 5.70e-02 36_[+1(4.34e-05)]_36 chrII:8731989-8732069 4.15e-02 80 chrV:20746967-20747047 8.85e-01 80 chrIV:3720791-3720871 1.78e-02 34_[+1(6.11e-05)]_38 chrIII:1226444-1226524 2.72e-04 34_[+3(2.08e-05)]_38 chrV:13576055-13576135 1.81e-02 27_[+3(3.29e-05)]_45 chrX:9103178-9103258 5.78e-02 80 chrII:15219160-15219240 3.77e-03 80 chrX:2047170-2047250 2.49e-03 15_[+1(4.34e-05)]_57 chrIV:1657204-1657284 2.33e-04 26_[+2(3.89e-05)]_4_[+3(7.04e-05)]_\ 17_[+3(2.08e-05)]_9 chrI:13028606-13028686 9.04e-03 47_[+1(8.18e-05)]_25 chrII:6409862-6409942 6.34e-02 80 chrII:5398950-5399030 1.51e-01 80 chrIV:4674465-4674545 8.71e-02 59_[+1(6.11e-05)]_13 chrI:14625133-14625213 1.79e-01 80 chrX:9602143-9602223 1.35e-02 60_[+1(6.11e-05)]_12 chrX:9100909-9100989 1.21e-01 10_[+2(3.89e-05)]_62 chrI:7714050-7714130 8.06e-02 80 chrII:10510369-10510449 2.06e-01 57_[+3(9.59e-05)]_15 chrX:9092020-9092100 1.24e-02 34_[+2(7.89e-05)]_38 chrIII:7322144-7322224 3.43e-02 26_[+1(4.34e-05)]_46 chrI:4420785-4420865 1.55e-01 80 chrIII:710189-710269 1.95e-01 80 chrX:9452233-9452313 2.47e-01 80 chrV:20749190-20749270 7.31e-04 10_[+3(1.00e-05)]_32_[+5(1.34e-05)]_\ 22 chrV:12196804-12196884 2.77e-01 80 chrIII:3307590-3307670 1.62e-01 80 chrIII:3669652-3669732 2.84e-02 80 chrIV:5603502-5603582 1.47e-01 56_[+2(3.89e-05)]_16 chrV:9673610-9673690 1.46e-03 54_[+1(2.00e-05)]_18 chrX:9396502-9396582 2.22e-01 80 chrIII:7317480-7317560 2.15e-01 80 chrI:11091032-11091112 5.73e-03 40_[+1(2.00e-05)]_32 chrIV:12048092-12048172 5.66e-06 16_[+2(5.70e-05)]_26_[+5(1.34e-05)]_\ 6_[+1(2.00e-05)]_8 chrII:11221891-11221971 5.07e-02 80 chrX:12005980-12006060 6.26e-03 24_[+1(2.00e-05)]_48 chrIV:11568727-11568807 7.56e-02 14_[+2(3.89e-05)]_58 chrIV:10811575-10811655 4.73e-02 80 chrII:9230706-9230786 2.66e-01 80 chrIV:13759517-13759597 2.94e-02 80 chrX:10770177-10770257 1.24e-02 26_[+1(2.00e-05)]_46 chrII:4648982-4649062 2.66e-01 80 chrIII:8719916-8719996 6.94e-03 45_[+4(1.58e-05)]_27 chrX:12181773-12181853 3.51e-01 80 chrIII:11425612-11425692 3.53e-02 21_[+2(1.76e-05)]_51 chrV:13209705-13209785 5.94e-02 39_[+2(7.89e-05)]_33 chrIV:6576166-6576246 5.18e-04 6_[+3(3.29e-05)]_[+3(7.04e-05)]_28_\ [+1(6.11e-05)]_22 chrII:9186026-9186106 1.25e-01 51_[+2(3.89e-05)]_21 chrIV:14605259-14605339 4.31e-04 63_[+4(1.58e-05)]_9 chrIV:5565255-5565335 3.75e-03 23_[+2(3.89e-05)]_49 chrX:2482769-2482849 1.29e-01 80 chrIII:11947628-11947708 2.40e-03 30_[+1(8.18e-05)]_16_[+4(1.58e-05)]_\ 2_[+4(7.67e-05)]_8 chrX:16412164-16412244 4.86e-03 40_[+1(6.11e-05)]_32 chrIII:8354837-8354917 1.72e-01 80 chrII:8702077-8702157 2.85e-03 54_[+1(9.90e-05)]_18 chrIII:2294862-2294942 4.57e-02 80 chrV:20752801-20752881 6.43e-02 45_[+5(1.34e-05)]_27 chrX:14559675-14559755 4.46e-02 80 chrIV:7523884-7523964 1.63e-02 60_[+3(1.00e-05)]_12 chrI:11673424-11673504 3.70e-01 80 chrIII:9664995-9665075 3.85e-04 25_[+4(1.58e-05)]_47 chrIV:1375437-1375517 2.45e-02 37_[+5(1.34e-05)]_35 chrIV:6500959-6501039 7.23e-02 38_[+3(2.08e-05)]_34 chrIV:10867539-10867619 1.41e-03 50_[+1(6.11e-05)]_22 chrV:19428049-19428129 2.12e-03 18_[+4(6.15e-05)]_28_[+1(2.00e-05)]_\ 18 chrI:1290476-1290556 1.29e-01 54_[+1(8.18e-05)]_18 chrX:2700791-2700871 3.28e-01 80 chrV:10718557-10718637 1.95e-01 80 chrIV:1881950-1882030 1.07e-01 80 chrI:13508781-13508861 2.11e-04 37_[+3(7.04e-05)]_35 chrII:10203957-10204037 1.88e-01 80 chrX:3227054-3227134 1.85e-01 80 chrX:3826300-3826380 1.24e-01 80 chrV:15497865-15497945 4.68e-04 54_[+5(1.34e-05)]_9_[+1(4.34e-05)]_\ 1 chrX:10618772-10618852 3.96e-01 80 chrV:7847850-7847930 3.75e-02 26_[+2(3.89e-05)]_46 chrIII:8733450-8733530 3.45e-03 80 chrII:6937219-6937299 4.32e-01 80 chrI:7969382-7969462 1.02e-03 57_[+4(6.15e-05)]_15 chrIV:11694308-11694388 8.73e-02 52_[+1(4.34e-05)]_20 chrV:8445796-8445876 4.22e-02 4_[+3(7.04e-05)]_57_[+3(7.04e-05)]_\ 3 chrII:10136915-10136995 2.28e-03 14_[+4(4.68e-05)]_58 chrI:1392934-1393014 1.25e-02 13_[+1(2.00e-05)]_59 chrII:7183660-7183740 3.08e-01 80 chrII:11393965-11394045 7.22e-02 80 chrX:647797-647877 1.28e-01 16_[+1(6.11e-05)]_56 chrII:9285078-9285158 5.37e-03 80 chrV:2259936-2260016 1.64e-02 80 chrII:8733919-8733999 5.73e-01 80 chrX:13743507-13743587 9.19e-01 80 chrX:3307078-3307158 1.75e-01 80 chrX:11664343-11664423 5.70e-03 1_[+2(3.89e-05)]_71 chrI:6077412-6077492 1.80e-01 80 chrV:10247113-10247193 2.78e-01 80 chrIII:622911-622991 6.18e-03 80 chrX:11597926-11598006 1.81e-02 80 chrV:19496605-19496685 4.63e-02 23_[+4(1.58e-05)]_[+4(1.58e-05)]_\ [+4(1.58e-05)]_[+4(1.58e-05)]_25 chrII:202141-202221 2.49e-01 80 chrV:12486955-12487035 4.79e-01 80 chrII:8899539-8899619 9.27e-02 80 chrIII:9352758-9352838 3.46e-03 35_[+1(2.00e-05)]_37 chrV:6480554-6480634 9.84e-03 42_[+4(3.05e-05)]_30 chrI:6958791-6958871 3.44e-02 64_[+3(9.59e-05)]_8 chrII:4971612-4971692 6.84e-03 46_[+3(2.08e-05)]_26 chrIII:13732879-13732959 1.23e-01 66_[+2(5.70e-05)]_6 chrII:11305749-11305829 3.42e-01 80 chrX:2367240-2367320 3.28e-01 80 chrX:5772970-5773050 4.86e-01 80 chrI:14902887-14902967 3.52e-05 16_[+1(2.00e-05)]_17_[+4(1.58e-05)]_\ 31 chrIII:9358531-9358611 1.72e-02 41_[+3(3.29e-05)]_31 chrV:11207907-11207987 2.27e-02 56_[+1(2.00e-05)]_16 chrX:10624365-10624445 7.97e-01 80 chrIV:4852069-4852149 3.91e-03 49_[+3(7.04e-05)]_23 chrII:7343827-7343907 2.46e-01 80 chrIV:14119300-14119380 7.85e-01 80 chrII:12456152-12456232 1.93e-02 9_[+1(2.00e-05)]_23_[+1(2.00e-05)]_\ 32 chrI:5518852-5518932 4.75e-01 80 chrV:2218997-2219077 4.05e-02 2_[+1(8.18e-05)]_70 chrIV:13865297-13865377 1.64e-03 62_[+3(4.50e-05)]_10 chrI:4977421-4977501 4.58e-02 9_[+2(7.89e-05)]_63 chrIV:3232120-3232200 7.01e-03 32_[+1(2.00e-05)]_40 chrII:8451527-8451607 5.04e-02 80 chrIII:13254318-13254398 3.71e-03 22_[+2(3.89e-05)]_50 chrX:15879799-15879879 8.99e-02 80 chrIII:8136649-8136729 3.25e-02 50_[+3(1.00e-05)]_22 chrII:8095460-8095540 8.00e-01 80 chrIII:9446635-9446715 1.08e-02 29_[+4(9.06e-05)]_43 chrI:7176762-7176842 4.46e-02 66_[+2(5.70e-05)]_6 chrII:6417064-6417144 1.60e-03 53_[+5(1.34e-05)]_19 chrIV:14617663-14617743 9.68e-02 80 chrIV:8002629-8002709 2.18e-01 80 chrI:14948187-14948267 3.72e-01 80 chrX:7953859-7953939 2.91e-03 48_[+1(4.34e-05)]_24 chrX:5454617-5454697 8.05e-01 80 chrII:6837198-6837278 1.02e-03 27_[+1(4.34e-05)]_45 chrX:6729768-6729848 1.49e-02 50_[+1(2.00e-05)]_22 chrII:8733521-8733601 7.04e-01 80 chrI:6412690-6412770 2.12e-02 80 chrX:8658119-8658199 9.89e-03 80 chrIII:908120-908200 2.27e-03 80 chrI:4434036-4434116 2.12e-04 69_[+4(1.58e-05)]_3 chrX:16150353-16150433 1.91e-01 80 chrV:4800717-4800797 7.44e-03 50_[+3(7.04e-05)]_22 chrX:432593-432673 3.18e-02 80 chrI:260297-260377 9.26e-02 80 chrX:16814181-16814261 8.03e-02 54_[+1(2.00e-05)]_18 chrIV:5600473-5600553 7.11e-04 69_[+3(2.08e-05)]_3 chrX:17330694-17330774 1.21e-02 31_[+2(5.70e-05)]_41 chrIV:10421457-10421537 2.80e-01 80 chrII:8985673-8985753 2.66e-02 9_[+2(1.76e-05)]_63 chrIII:5980473-5980553 8.29e-03 80 chrIII:6346106-6346186 4.96e-01 80 chrII:7030270-7030350 5.50e-01 80 chrII:14043366-14043446 2.63e-02 80 chrV:8964328-8964408 1.02e-02 80 chrI:9087257-9087337 5.14e-02 3_[+2(5.70e-05)]_69 chrI:11280826-11280906 3.70e-01 80 chrV:14736333-14736413 7.38e-02 80 chrX:6932257-6932337 2.83e-03 32_[+2(3.89e-05)]_40 chrII:10988807-10988887 4.42e-01 80 chrI:13031519-13031599 9.42e-01 80 chrII:7623603-7623683 2.63e-02 11_[+5(1.34e-05)]_61 chrI:6577197-6577277 6.44e-02 7_[+1(4.34e-05)]_65 chrX:3317678-3317758 7.10e-02 44_[+1(6.11e-05)]_28 chrI:6882075-6882155 1.39e-01 43_[+5(1.34e-05)]_29 chrX:12179086-12179166 9.31e-01 80 chrIII:5665454-5665534 1.24e-04 62_[+1(4.34e-05)]_10 chrII:2195697-2195777 5.12e-03 72_[+4(1.58e-05)] chrII:12104675-12104755 1.86e-04 55_[+4(1.58e-05)]_17 chrIV:2785192-2785272 1.56e-02 43_[+5(1.34e-05)]_29 chrIII:8297069-8297149 1.89e-01 80 chrIII:95127-95207 2.44e-01 80 chrII:4693356-4693436 1.03e-02 2_[+5(1.34e-05)]_35_[+5(1.34e-05)]_\ 27 chrX:13669797-13669877 1.95e-01 80 chrIII:8491723-8491803 2.66e-01 80 chrI:5606908-5606988 8.08e-03 80 chrX:16332033-16332113 3.83e-03 27_[+5(1.34e-05)]_21_[+4(4.68e-05)]_\ 16 chrX:9102274-9102354 7.10e-01 80 chrII:8734646-8734726 4.22e-01 80 chrX:2368666-2368746 1.76e-03 1_[+4(1.58e-05)]_30_[+1(6.11e-05)]_\ 33 chrX:854361-854441 4.96e-02 80 chrIV:9032718-9032798 1.38e-01 80 chrIV:12999208-12999288 2.39e-02 80 chrV:9440815-9440895 8.81e-02 43_[+2(5.70e-05)]_29 chrIII:13187045-13187125 1.10e-02 55_[+3(3.29e-05)]_17 chrI:9839479-9839559 9.22e-01 80 chrIII:12178286-12178366 1.41e-01 80 chrV:11950788-11950868 4.05e-01 80 chrII:2455005-2455085 6.41e-03 80 chrIV:5360033-5360113 2.34e-02 31_[+2(1.76e-05)]_41 chrIII:5233298-5233378 4.02e-02 80 chrI:14320462-14320542 2.95e-03 7_[+5(1.34e-05)]_56_[+2(5.70e-05)]_\ 1 chrV:11321874-11321954 2.26e-01 80 chrX:15508133-15508213 1.79e-02 1_[+3(1.00e-05)]_71 chrV:5850559-5850639 6.09e-03 66_[+4(1.58e-05)]_6 chrIII:13713077-13713157 6.95e-02 80 chrIII:13000680-13000760 4.18e-02 50_[+2(5.70e-05)]_22 chrIII:517563-517643 1.42e-01 80 chrIII:12920041-12920121 4.08e-01 80 chrI:14325442-14325522 3.33e-01 80 chrV:11675187-11675267 6.87e-03 35_[+2(7.89e-05)]_37 chrI:4745410-4745490 5.45e-01 80 chrX:2498063-2498143 5.12e-02 80 chrIV:7099518-7099598 2.16e-03 24_[+3(4.50e-05)]_48 chrI:7548400-7548480 7.46e-04 6_[+4(1.58e-05)]_10_[+4(1.58e-05)]_\ 29_[+1(8.18e-05)]_11 chrX:11248231-11248311 3.85e-03 45_[+3(2.08e-05)]_27 chrV:19153426-19153506 1.01e-01 80 chrII:8225049-8225129 7.32e-02 80 chrV:12737864-12737944 1.63e-03 80 chrI:2974851-2974931 4.46e-03 56_[+3(3.29e-05)]_16 chrV:7065666-7065746 2.61e-01 80 chrI:6712963-6713043 8.24e-03 57_[+3(7.04e-05)]_15 chrII:4002371-4002451 2.67e-02 46_[+2(7.89e-05)]_26 chrIV:8170408-8170488 6.27e-05 32_[+3(8.38e-05)]_40 chrX:15520047-15520127 1.73e-01 80 chrV:1570207-1570287 1.28e-01 54_[+1(4.34e-05)]_18 chrII:6926251-6926331 1.32e-01 80 chrII:13196911-13196991 8.78e-01 80 chrV:7811865-7811945 7.76e-01 80 chrII:7034219-7034299 9.77e-02 80 chrI:6151607-6151687 8.39e-02 80 chrV:20068548-20068628 6.11e-04 23_[+4(3.05e-05)]_49 chrIV:9667217-9667297 1.60e-01 80 chrII:8732704-8732784 3.50e-01 80 chrIII:558953-559033 8.32e-02 80 chrI:13499045-13499125 1.00e-02 41_[+3(2.08e-05)]_31 chrII:5937538-5937618 7.67e-01 80 chrV:16040585-16040665 2.56e-01 80 chrV:8796988-8797068 1.75e-02 49_[+1(8.18e-05)]_23 chrII:7810177-7810257 5.21e-01 80 chrIV:9368396-9368476 1.52e-03 7_[+2(7.89e-05)]_65 chrX:2698881-2698961 4.73e-05 12_[+3(1.00e-05)]_44_[+4(1.58e-05)]_\ 8 chrIV:13169588-13169668 1.94e-02 67_[+3(7.04e-05)]_5 chrI:6945731-6945811 1.02e-01 26_[+5(1.34e-05)]_46 chrII:10549455-10549535 2.43e-02 80 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c22n07.farnam.hpc.yale.internal ********************************************************************************