******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/worm/fasta/RankLinear2.0_40/pha-2.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrV:20065265-20065345 1.0000 80 chrV:18596418-18596498 1.0000 80 chrV:18843181-18843261 1.0000 80 chrV:20761908-20761988 1.0000 80 chrV:11665044-11665124 1.0000 80 chrII:2570823-2570903 1.0000 80 chrX:14571440-14571520 1.0000 80 chrV:19633547-19633627 1.0000 80 chrV:9451014-9451094 1.0000 80 chrM:168-248 1.0000 80 chrV:20075034-20075114 1.0000 80 chrV:20061688-20061768 1.0000 80 chrV:20281247-20281327 1.0000 80 chrV:19962227-19962307 1.0000 80 chrV:20073399-20073479 1.0000 80 chrV:4800689-4800769 1.0000 80 chrI:7713922-7714002 1.0000 80 chrV:20431597-20431677 1.0000 80 chrV:18908370-18908450 1.0000 80 chrIV:8002725-8002805 1.0000 80 chrV:19341177-19341257 1.0000 80 chrV:20756351-20756431 1.0000 80 chrV:20749229-20749309 1.0000 80 chrI:6151677-6151757 1.0000 80 chrV:20063844-20063924 1.0000 80 chrM:5529-5609 1.0000 80 chrV:18610143-18610223 1.0000 80 chrV:19391292-19391372 1.0000 80 chrM:5739-5819 1.0000 80 chrII:2455004-2455084 1.0000 80 chrI:3248541-3248621 1.0000 80 chrIV:4247818-4247898 1.0000 80 chrIV:14496620-14496700 1.0000 80 chrV:20832709-20832789 1.0000 80 chrV:20053488-20053568 1.0000 80 chrX:5140286-5140366 1.0000 80 chrV:20002553-20002633 1.0000 80 chrI:3416618-3416698 1.0000 80 chrIV:4588622-4588702 1.0000 80 chrV:18690972-18691052 1.0000 80 chrV:19637511-19637591 1.0000 80 chrIV:6648791-6648871 1.0000 80 chrV:20852170-20852250 1.0000 80 chrV:20280012-20280092 1.0000 80 chrV:11674183-11674263 1.0000 80 chrV:11660780-11660860 1.0000 80 chrV:20760807-20760887 1.0000 80 chrX:15279487-15279567 1.0000 80 chrM:10010-10090 1.0000 80 chrV:20218778-20218858 1.0000 80 chrX:9494814-9494894 1.0000 80 chrI:6175164-6175244 1.0000 80 chrM:2866-2946 1.0000 80 chrV:18913310-18913390 1.0000 80 chrII:4130437-4130517 1.0000 80 chrV:20018583-20018663 1.0000 80 chrV:19723004-19723084 1.0000 80 chrX:12005946-12006026 1.0000 80 chrV:16699847-16699927 1.0000 80 chrV:3587770-3587850 1.0000 80 chrIV:14875009-14875089 1.0000 80 chrII:15264706-15264786 1.0000 80 chrV:18832988-18833068 1.0000 80 chrV:13576078-13576158 1.0000 80 chrV:20410475-20410555 1.0000 80 chrM:3669-3749 1.0000 80 chrX:7067757-7067837 1.0000 80 chrI:13499092-13499172 1.0000 80 chrIV:12816239-12816319 1.0000 80 chrX:5480404-5480484 1.0000 80 chrX:5123050-5123130 1.0000 80 chrM:10830-10910 1.0000 80 chrIV:2217347-2217427 1.0000 80 chrI:14325526-14325606 1.0000 80 chrM:9379-9459 1.0000 80 chrV:20137542-20137622 1.0000 80 chrI:6882147-6882227 1.0000 80 chrX:1517657-1517737 1.0000 80 chrV:19964945-19965025 1.0000 80 chrIV:1751644-1751724 1.0000 80 chrV:19082504-19082584 1.0000 80 chrM:1406-1486 1.0000 80 chrIII:1218311-1218391 1.0000 80 chrV:19127026-19127106 1.0000 80 chrV:19584597-19584677 1.0000 80 chrX:4484369-4484449 1.0000 80 chrX:6097695-6097775 1.0000 80 chrM:7034-7114 1.0000 80 chrIII:3499994-3500074 1.0000 80 chrIV:13955716-13955796 1.0000 80 chrV:20729133-20729213 1.0000 80 chrIV:4399312-4399392 1.0000 80 chrX:2216851-2216931 1.0000 80 chrIII:8132566-8132646 1.0000 80 chrII:7034185-7034265 1.0000 80 chrIII:13527869-13527949 1.0000 80 chrX:14331022-14331102 1.0000 80 chrV:10716976-10717056 1.0000 80 chrV:9451214-9451294 1.0000 80 chrI:11280942-11281022 1.0000 80 chrV:19153419-19153499 1.0000 80 chrX:12181795-12181875 1.0000 80 chrIV:5753335-5753415 1.0000 80 chrI:232343-232423 1.0000 80 chrX:4962531-4962611 1.0000 80 chrI:12815565-12815645 1.0000 80 chrX:2047209-2047289 1.0000 80 chrI:9168756-9168836 1.0000 80 chrX:8638852-8638932 1.0000 80 chrI:12846644-12846724 1.0000 80 chrV:11083839-11083919 1.0000 80 chrII:8899424-8899504 1.0000 80 chrM:8296-8376 1.0000 80 chrX:2460034-2460114 1.0000 80 chrI:9731426-9731506 1.0000 80 chrI:14948224-14948304 1.0000 80 chrV:13176492-13176572 1.0000 80 chrX:9225429-9225509 1.0000 80 chrI:11202451-11202531 1.0000 80 chrM:7240-7320 1.0000 80 chrI:13422630-13422710 1.0000 80 chrIII:10432218-10432298 1.0000 80 chrV:13646000-13646080 1.0000 80 chrIII:10094699-10094779 1.0000 80 chrI:6173076-6173156 1.0000 80 chrIII:445613-445693 1.0000 80 chrII:5092448-5092528 1.0000 80 chrX:15881173-15881253 1.0000 80 chrIII:13658083-13658163 1.0000 80 chrIV:7023244-7023324 1.0000 80 chrV:6270239-6270319 1.0000 80 chrII:8748143-8748223 1.0000 80 chrX:8156135-8156215 1.0000 80 chrV:20072275-20072355 1.0000 80 chrX:12515792-12515872 1.0000 80 chrIII:3476388-3476468 1.0000 80 chrIII:512212-512292 1.0000 80 chrI:9141765-9141845 1.0000 80 chrV:18677405-18677485 1.0000 80 chrII:4582871-4582951 1.0000 80 chrII:2452719-2452799 1.0000 80 chrIII:7736946-7737026 1.0000 80 chrI:14070757-14070837 1.0000 80 chrX:8925580-8925660 1.0000 80 chrV:19617363-19617443 1.0000 80 chrV:4798439-4798519 1.0000 80 chrV:19881392-19881472 1.0000 80 chrV:7231006-7231086 1.0000 80 chrV:9583110-9583190 1.0000 80 chrX:3945869-3945949 1.0000 80 chrM:2111-2191 1.0000 80 chrI:14229251-14229331 1.0000 80 chrIII:11091816-11091896 1.0000 80 chrX:3472411-3472491 1.0000 80 chrIV:5600288-5600368 1.0000 80 chrX:12179072-12179152 1.0000 80 chrII:15263194-15263274 1.0000 80 chrIV:3227717-3227797 1.0000 80 chrII:10549461-10549541 1.0000 80 chrV:7745968-7746048 1.0000 80 chrIII:10090230-10090310 1.0000 80 chrV:6796969-6797049 1.0000 80 chrI:1175808-1175888 1.0000 80 chrV:5678242-5678322 1.0000 80 chrIV:14013824-14013904 1.0000 80 chrI:7711794-7711874 1.0000 80 chrV:20483753-20483833 1.0000 80 chrM:4611-4691 1.0000 80 chrIV:1687223-1687303 1.0000 80 chrIV:5371068-5371148 1.0000 80 chrIV:1905374-1905454 1.0000 80 chrI:12225480-12225560 1.0000 80 chrII:8532081-8532161 1.0000 80 chrIII:8650340-8650420 1.0000 80 chrI:1842100-1842180 1.0000 80 chrV:18807022-18807102 1.0000 80 chrX:5360739-5360819 1.0000 80 chrII:7001587-7001667 1.0000 80 chrX:5686273-5686353 1.0000 80 chrX:12693370-12693450 1.0000 80 chrX:855906-855986 1.0000 80 chrIII:10856987-10857067 1.0000 80 chrIV:3943919-3943999 1.0000 80 chrI:1251609-1251689 1.0000 80 chrIII:3664377-3664457 1.0000 80 chrI:14066976-14067056 1.0000 80 chrII:14685587-14685667 1.0000 80 chrV:9424677-9424757 1.0000 80 chrI:7194885-7194965 1.0000 80 chrII:11403341-11403421 1.0000 80 chrIV:3231917-3231997 1.0000 80 chrX:15347855-15347935 1.0000 80 chrIII:640581-640661 1.0000 80 chrX:9296778-9296858 1.0000 80 chrIII:4542537-4542617 1.0000 80 chrI:5768801-5768881 1.0000 80 chrV:11675099-11675179 1.0000 80 chrM:7612-7692 1.0000 80 chrIV:6984737-6984817 1.0000 80 chrII:6832777-6832857 1.0000 80 chrIV:174479-174559 1.0000 80 chrI:9249378-9249458 1.0000 80 chrV:18827671-18827751 1.0000 80 chrI:9087268-9087348 1.0000 80 chrI:13470435-13470515 1.0000 80 chrIV:3233299-3233379 1.0000 80 chrM:11031-11111 1.0000 80 chrI:3873924-3874004 1.0000 80 chrI:2297459-2297539 1.0000 80 chrII:14438273-14438353 1.0000 80 chrV:18981130-18981210 1.0000 80 chrM:9179-9259 1.0000 80 chrIII:8417404-8417484 1.0000 80 chrX:5473719-5473799 1.0000 80 chrX:9078268-9078348 1.0000 80 chrII:7343858-7343938 1.0000 80 chrIV:10869652-10869732 1.0000 80 chrV:20694180-20694260 1.0000 80 chrI:14606072-14606152 1.0000 80 chrX:17330663-17330743 1.0000 80 chrM:1205-1285 1.0000 80 chrV:1821483-1821563 1.0000 80 chrII:6858984-6859064 1.0000 80 chrIV:16169821-16169901 1.0000 80 chrV:15610495-15610575 1.0000 80 chrX:2043406-2043486 1.0000 80 chrI:2487836-2487916 1.0000 80 chrM:12620-12700 1.0000 80 chrI:10807175-10807255 1.0000 80 chrV:11335935-11336015 1.0000 80 chrX:9495040-9495120 1.0000 80 chrII:5399293-5399373 1.0000 80 chrV:2278733-2278813 1.0000 80 chrII:5836533-5836613 1.0000 80 chrII:14857075-14857155 1.0000 80 chrV:12353229-12353309 1.0000 80 chrIII:8250406-8250486 1.0000 80 chrV:4491673-4491753 1.0000 80 chrI:5311564-5311644 1.0000 80 chrIII:3175108-3175188 1.0000 80 chrX:12890248-12890328 1.0000 80 chrI:1575720-1575800 1.0000 80 chrI:13371242-13371322 1.0000 80 chrIV:16388424-16388504 1.0000 80 chrI:7140018-7140098 1.0000 80 chrM:2313-2393 1.0000 80 chrI:6532069-6532149 1.0000 80 chrX:13945641-13945721 1.0000 80 chrII:14822581-14822661 1.0000 80 chrII:7814313-7814393 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/worm/inference_raw/MEME/RankLinear2.0_40_pha-2/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/worm/fasta/RankLinear2.0_40/pha-2.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.272 C 0.222 G 0.224 T 0.282 Background letter frequencies (from file dataset with add-one prior applied): A 0.272 C 0.222 G 0.224 T 0.282 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF CCSCGCGC MEME-1 width = 8 sites = 26 llr = 246 E-value = 9.5e-009 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCSCGCGC MEME-1 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C 8938:a:a probability G 21719:a: matrix T :::11::: bits 2.2 * * 2.0 *** 1.7 * **** 1.5 * **** Relative 1.3 ******** Entropy 1.1 ******** (13.6 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CCGCGCGC consensus G C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCSCGCGC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrI:9087268-9087348 23 6.06e-06 TCGCTCGTTT CCGCGCGC ACTTTTCGCG chrIII:3664377-3664457 44 6.06e-06 TTGCAACACG CCGCGCGC ATTTCGCAAC chrIII:10094699-10094779 56 6.06e-06 CGCGTCCCCG CCGCGCGC GCAAACACAG chrV:10716976-10717056 57 6.06e-06 GTCAACCCTC CCGCGCGC GCGAGAGCCC chrIV:4588622-4588702 26 6.06e-06 AGAGAAGAGG CCGCGCGC CCCACGAGAA chrIV:6984737-6984817 72 1.21e-05 GATCAAAACG CCCCGCGC G chrX:5360739-5360819 28 1.21e-05 CGGAAAGAGA CCCCGCGC ACACGAGAGA chrV:7231006-7231086 28 1.21e-05 GAGTCGCAAC CCCCGCGC ACTTTTTATG chrX:9494814-9494894 50 1.21e-05 GGCTTAGGTG CCCCGCGC GGAAAGAGCG chrIV:14496620-14496700 55 1.21e-05 CTCCGCCGTC CCCCGCGC AAGCGCAAGA chrV:18807022-18807102 7 1.82e-05 CAGCAG GCGCGCGC GGTACACTTA chrIV:5371068-5371148 60 1.82e-05 CAACTCCGCG GCGCGCGC TTCCGCAACC chrII:15263194-15263274 6 1.82e-05 CGCGC GCGCGCGC GCTCTTCGGT chrX:2216851-2216931 19 1.82e-05 GCACGCGGCA GCGCGCGC GGGGACAGGC chrIV:2217347-2217427 62 1.82e-05 GCGCCTGCGA GCGCGCGC GGGAAAACTA chrV:20852170-20852250 24 1.82e-05 CGCAAGACGC GCGCGCGC TTTCTGCAAG chrI:1175808-1175888 68 3.19e-05 CTTGCAAAAA CCGTGCGC CCACC chrV:11665044-11665124 70 3.19e-05 TGCGTGTCTC CCGTGCGC CTT chrM:2313-2393 13 3.81e-05 CTGAACTTAA CCGGGCGC CATTTGATTT chrV:3587770-3587850 46 4.42e-05 GCGCAATCCG CGGCGCGC GATTTCGCAA chrV:18913310-18913390 28 4.42e-05 GGGCGCCATG CGGCGCGC TCCCTTGCGG chrII:8748143-8748223 27 5.18e-05 CTCAAGTGCT CCGCTCGC GCGGTGTATG chrV:20073399-20073479 1 5.94e-05 . CCCTGCGC GGAACTATTC chrX:3945869-3945949 49 6.55e-05 AAAGCAGACG CCCGGCGC AGGCAGTGTA chrX:12515792-12515872 11 8.51e-05 GTATTCTTTT CCCCTCGC CTCTTCCACA chrIII:4542537-4542617 53 1.11e-04 GCCGTTTTAG CCCCGCCC CTTGAAATAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCSCGCGC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:9087268-9087348 6.1e-06 22_[+1]_50 chrIII:3664377-3664457 6.1e-06 43_[+1]_29 chrIII:10094699-10094779 6.1e-06 55_[+1]_17 chrV:10716976-10717056 6.1e-06 56_[+1]_16 chrIV:4588622-4588702 6.1e-06 25_[+1]_47 chrIV:6984737-6984817 1.2e-05 71_[+1]_1 chrX:5360739-5360819 1.2e-05 27_[+1]_45 chrV:7231006-7231086 1.2e-05 27_[+1]_45 chrX:9494814-9494894 1.2e-05 49_[+1]_23 chrIV:14496620-14496700 1.2e-05 54_[+1]_18 chrV:18807022-18807102 1.8e-05 6_[+1]_66 chrIV:5371068-5371148 1.8e-05 59_[+1]_13 chrII:15263194-15263274 1.8e-05 5_[+1]_67 chrX:2216851-2216931 1.8e-05 18_[+1]_54 chrIV:2217347-2217427 1.8e-05 61_[+1]_11 chrV:20852170-20852250 1.8e-05 23_[+1]_49 chrI:1175808-1175888 3.2e-05 67_[+1]_5 chrV:11665044-11665124 3.2e-05 69_[+1]_3 chrM:2313-2393 3.8e-05 12_[+1]_60 chrV:3587770-3587850 4.4e-05 45_[+1]_27 chrV:18913310-18913390 4.4e-05 27_[+1]_45 chrII:8748143-8748223 5.2e-05 26_[+1]_46 chrV:20073399-20073479 5.9e-05 [+1]_72 chrX:3945869-3945949 6.5e-05 48_[+1]_24 chrX:12515792-12515872 8.5e-05 10_[+1]_62 chrIII:4542537-4542617 0.00011 52_[+1]_20 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCSCGCGC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCSCGCGC width=8 seqs=26 chrI:9087268-9087348 ( 23) CCGCGCGC 1 chrIII:3664377-3664457 ( 44) CCGCGCGC 1 chrIII:10094699-10094779 ( 56) CCGCGCGC 1 chrV:10716976-10717056 ( 57) CCGCGCGC 1 chrIV:4588622-4588702 ( 26) CCGCGCGC 1 chrIV:6984737-6984817 ( 72) CCCCGCGC 1 chrX:5360739-5360819 ( 28) CCCCGCGC 1 chrV:7231006-7231086 ( 28) CCCCGCGC 1 chrX:9494814-9494894 ( 50) CCCCGCGC 1 chrIV:14496620-14496700 ( 55) CCCCGCGC 1 chrV:18807022-18807102 ( 7) GCGCGCGC 1 chrIV:5371068-5371148 ( 60) GCGCGCGC 1 chrII:15263194-15263274 ( 6) GCGCGCGC 1 chrX:2216851-2216931 ( 19) GCGCGCGC 1 chrIV:2217347-2217427 ( 62) GCGCGCGC 1 chrV:20852170-20852250 ( 24) GCGCGCGC 1 chrI:1175808-1175888 ( 68) CCGTGCGC 1 chrV:11665044-11665124 ( 70) CCGTGCGC 1 chrM:2313-2393 ( 13) CCGGGCGC 1 chrV:3587770-3587850 ( 46) CGGCGCGC 1 chrV:18913310-18913390 ( 28) CGGCGCGC 1 chrII:8748143-8748223 ( 27) CCGCTCGC 1 chrV:20073399-20073479 ( 1) CCCTGCGC 1 chrX:3945869-3945949 ( 49) CCCGGCGC 1 chrX:12515792-12515872 ( 11) CCCCTCGC 1 chrIII:4542537-4542617 ( 53) CCCCGCCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCSCGCGC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.3895 E= 9.5e-009 -1134 179 4 -1134 -1134 206 -154 -1134 -1134 64 154 -1134 -1134 186 -154 -129 -1134 -1134 204 -187 -1134 217 -1134 -1134 -1134 -253 210 -1134 -1134 217 -1134 -1134 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCSCGCGC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 26 E= 9.5e-009 0.000000 0.769231 0.230769 0.000000 0.000000 0.923077 0.076923 0.000000 0.000000 0.346154 0.653846 0.000000 0.000000 0.807692 0.076923 0.115385 0.000000 0.000000 0.923077 0.076923 0.000000 1.000000 0.000000 0.000000 0.000000 0.038462 0.961538 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCSCGCGC MEME-1 regular expression -------------------------------------------------------------------------------- [CG]C[GC]CGCGC -------------------------------------------------------------------------------- Time 5.21 secs. ******************************************************************************** ******************************************************************************** MOTIF AMACASAC MEME-2 width = 8 sites = 33 llr = 270 E-value = 3.0e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif AMACASAC MEME-2 Description -------------------------------------------------------------------------------- Simplified A a47:91a: pos.-specific C :6:9:5:a probability G ::3:13:: matrix T :::1:1:: bits 2.2 * 2.0 * ** 1.7 * * ** 1.5 * ** ** Relative 1.3 * ** ** Entropy 1.1 ***** ** (11.8 bits) 0.9 ***** ** 0.7 ***** ** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel ACACACAC consensus AG G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AMACASAC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrI:13371242-13371322 21 1.33e-05 GTTTAGACAC ACACACAC AGAGTGGGAG chrIII:8417404-8417484 40 1.33e-05 CCTTCAGTAT acacacac acacacacac chrIV:3231917-3231997 18 1.33e-05 GAGGACACAG ACACACAC GCATAGTTTC chrI:1251609-1251689 19 1.33e-05 tcacacacac acacacac acatacaGTC chrV:7745968-7746048 30 1.33e-05 CCCTTTGCAG ACACACAC TTCACTGGAC chrIV:3227717-3227797 40 1.33e-05 CCTTACGCAC ACACACAC ACTTTTTACT chrIV:12816239-12816319 11 1.33e-05 GCAAAAGCAC ACACACAC ACATCTATTC chrV:20756351-20756431 71 1.33e-05 GTCCACAAAC ACACACAC AA chrII:6858984-6859064 12 2.67e-05 AAGATCGTCG ACACAGAC GTAGAGCGAC chrIII:10094699-10094779 68 2.67e-05 GCGCGCGCAA ACACAGAC ACCCT chrIV:174479-174559 38 5.39e-05 GATAAGATAC AAACACAC CTAGGAGATT chrX:9225429-9225509 36 5.39e-05 CATAGCGGTA AAACACAC GCTGCCGCGC chrX:7067757-7067837 16 5.39e-05 AACAGTTACT AAACACAC AACTAGTTGC chrI:7194885-7194965 60 8.14e-05 GTGTACATAG ACGCAGAC ATTCTTTCTC chrI:12846644-12846724 4 8.14e-05 AAG ACGCAGAC AATGTTAAAG chrX:9494814-9494894 15 8.14e-05 GCATATAGTG ACGCAGAC TCCATGACAA chrV:20280012-20280092 73 8.14e-05 CAGTACAAAC AAACAGAC chrIV:16169821-16169901 69 9.48e-05 GGAGGCATCA AAGCACAC ATTA chrIV:14875009-14875089 55 9.48e-05 GAGAGAGAGA AAGCACAC ATACACATGA chrV:9424677-9424757 25 1.42e-04 AAGCGCAGAG AAGCAGAC GAGCACTCGT chrII:8532081-8532161 4 1.42e-04 TAC ACACATAC CCGAATGGAC chrX:3945869-3945949 40 1.42e-04 GCCGCAGAGA AAGCAGAC GCCCGGCGCA chrI:9731426-9731506 31 1.42e-04 CATGAAGAGA AAGCAGAC CCAACGAGAG chrIV:4399312-4399392 13 1.42e-04 TGTGCCGTAC ACACATAC ACATATTGCA chrII:10549461-10549541 64 1.69e-04 ACGCGGACGC ACATACAC AAGGGTGTG chrI:6151677-6151757 2 1.69e-04 C ACACGCAC TATCCAATAT chrX:12890248-12890328 14 2.37e-04 AGTCTCACAA AAACAAAC AATGAAAAAG chrI:5311564-5311644 58 2.37e-04 GTCATTACAA AAACAAAC AAATAAATGT chrX:5360739-5360819 45 2.37e-04 CACACGAGAG ACGCAAAC GGTCCGCAGA chrV:18596418-18596498 45 2.37e-04 TACACTGTAC AAACATAC CTCCCAACAC chrV:4800689-4800769 47 2.65e-04 TTTTACAAAC ACATAGAC TGGACTGAGC chrI:9141765-9141845 73 3.22e-04 TGCAAGTGTG ACGCGCAC chrX:14571440-14571520 47 3.22e-04 TGAAAAAGAA AAATACAC TTTGTTTGAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AMACASAC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:13371242-13371322 1.3e-05 20_[+2]_52 chrIII:8417404-8417484 1.3e-05 39_[+2]_33 chrIV:3231917-3231997 1.3e-05 17_[+2]_55 chrI:1251609-1251689 1.3e-05 18_[+2]_54 chrV:7745968-7746048 1.3e-05 29_[+2]_43 chrIV:3227717-3227797 1.3e-05 39_[+2]_33 chrIV:12816239-12816319 1.3e-05 10_[+2]_62 chrV:20756351-20756431 1.3e-05 70_[+2]_2 chrII:6858984-6859064 2.7e-05 11_[+2]_61 chrIII:10094699-10094779 2.7e-05 67_[+2]_5 chrIV:174479-174559 5.4e-05 37_[+2]_35 chrX:9225429-9225509 5.4e-05 35_[+2]_37 chrX:7067757-7067837 5.4e-05 15_[+2]_57 chrI:7194885-7194965 8.1e-05 59_[+2]_13 chrI:12846644-12846724 8.1e-05 3_[+2]_69 chrX:9494814-9494894 8.1e-05 14_[+2]_58 chrV:20280012-20280092 8.1e-05 72_[+2] chrIV:16169821-16169901 9.5e-05 68_[+2]_4 chrIV:14875009-14875089 9.5e-05 54_[+2]_18 chrV:9424677-9424757 0.00014 24_[+2]_48 chrII:8532081-8532161 0.00014 3_[+2]_69 chrX:3945869-3945949 0.00014 39_[+2]_33 chrI:9731426-9731506 0.00014 30_[+2]_42 chrIV:4399312-4399392 0.00014 12_[+2]_60 chrII:10549461-10549541 0.00017 63_[+2]_9 chrI:6151677-6151757 0.00017 1_[+2]_71 chrX:12890248-12890328 0.00024 13_[+2]_59 chrI:5311564-5311644 0.00024 57_[+2]_15 chrX:5360739-5360819 0.00024 44_[+2]_28 chrV:18596418-18596498 0.00024 44_[+2]_28 chrV:4800689-4800769 0.00027 46_[+2]_26 chrI:9141765-9141845 0.00032 72_[+2] chrX:14571440-14571520 0.00032 46_[+2]_26 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AMACASAC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AMACASAC width=8 seqs=33 chrI:13371242-13371322 ( 21) ACACACAC 1 chrIII:8417404-8417484 ( 40) ACACACAC 1 chrIV:3231917-3231997 ( 18) ACACACAC 1 chrI:1251609-1251689 ( 19) ACACACAC 1 chrV:7745968-7746048 ( 30) ACACACAC 1 chrIV:3227717-3227797 ( 40) ACACACAC 1 chrIV:12816239-12816319 ( 11) ACACACAC 1 chrV:20756351-20756431 ( 71) ACACACAC 1 chrII:6858984-6859064 ( 12) ACACAGAC 1 chrIII:10094699-10094779 ( 68) ACACAGAC 1 chrIV:174479-174559 ( 38) AAACACAC 1 chrX:9225429-9225509 ( 36) AAACACAC 1 chrX:7067757-7067837 ( 16) AAACACAC 1 chrI:7194885-7194965 ( 60) ACGCAGAC 1 chrI:12846644-12846724 ( 4) ACGCAGAC 1 chrX:9494814-9494894 ( 15) ACGCAGAC 1 chrV:20280012-20280092 ( 73) AAACAGAC 1 chrIV:16169821-16169901 ( 69) AAGCACAC 1 chrIV:14875009-14875089 ( 55) AAGCACAC 1 chrV:9424677-9424757 ( 25) AAGCAGAC 1 chrII:8532081-8532161 ( 4) ACACATAC 1 chrX:3945869-3945949 ( 40) AAGCAGAC 1 chrI:9731426-9731506 ( 31) AAGCAGAC 1 chrIV:4399312-4399392 ( 13) ACACATAC 1 chrII:10549461-10549541 ( 64) ACATACAC 1 chrI:6151677-6151757 ( 2) ACACGCAC 1 chrX:12890248-12890328 ( 14) AAACAAAC 1 chrI:5311564-5311644 ( 58) AAACAAAC 1 chrX:5360739-5360819 ( 45) ACGCAAAC 1 chrV:18596418-18596498 ( 45) AAACATAC 1 chrV:4800689-4800769 ( 47) ACATAGAC 1 chrI:9141765-9141845 ( 73) ACGCGCAC 1 chrX:14571440-14571520 ( 47) AAATACAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AMACASAC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.4541 E= 3.0e+001 188 -1169 -1169 -1169 53 145 -1169 -1169 136 -1169 43 -1169 -1169 203 -1169 -163 179 -1169 -189 -1169 -158 121 43 -163 188 -1169 -1169 -1169 -1169 217 -1169 -1169 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AMACASAC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 33 E= 3.0e+001 1.000000 0.000000 0.000000 0.000000 0.393939 0.606061 0.000000 0.000000 0.696970 0.000000 0.303030 0.000000 0.000000 0.909091 0.000000 0.090909 0.939394 0.000000 0.060606 0.000000 0.090909 0.515152 0.303030 0.090909 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AMACASAC MEME-2 regular expression -------------------------------------------------------------------------------- A[CA][AG]CA[CG]AC -------------------------------------------------------------------------------- Time 10.85 secs. ******************************************************************************** ******************************************************************************** MOTIF CCCCYTCC MEME-3 width = 8 sites = 2 llr = 22 E-value = 2.1e+005 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCCCYTCC MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C aaaa5:aa probability G :::::::: matrix T ::::5a:: bits 2.2 **** ** 2.0 **** ** 1.7 **** *** 1.5 **** *** Relative 1.3 **** *** Entropy 1.1 ******** (15.9 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CCCCCTCC consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCCYTCC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrV:20761908-20761988 46 7.49e-06 GACTGGATTA CCCCCTCC CAAAAAGTCA chrIV:3943919-3943999 6 1.70e-05 TTTGC CCCCTTCC TCCCTCTTTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCCYTCC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:20761908-20761988 7.5e-06 45_[+3]_27 chrIV:3943919-3943999 1.7e-05 5_[+3]_67 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCCYTCC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCCCYTCC width=8 seqs=2 chrV:20761908-20761988 ( 46) CCCCCTCC 1 chrIV:3943919-3943999 ( 6) CCCCTTCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCCYTCC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 13.1555 E= 2.1e+005 -765 217 -765 -765 -765 217 -765 -765 -765 217 -765 -765 -765 217 -765 -765 -765 117 -765 82 -765 -765 -765 182 -765 217 -765 -765 -765 217 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCCYTCC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 2.1e+005 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.500000 0.000000 0.500000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCCYTCC MEME-3 regular expression -------------------------------------------------------------------------------- CCCC[CT]TCC -------------------------------------------------------------------------------- Time 14.62 secs. ******************************************************************************** ******************************************************************************** MOTIF CCCCCCCC MEME-4 width = 8 sites = 5 llr = 57 E-value = 1.4e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCCCCCCC MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C aaa8aaaa probability G :::::::: matrix T :::2:::: bits 2.2 *** **** 2.0 *** **** 1.7 *** **** 1.5 *** **** Relative 1.3 ******** Entropy 1.1 ******** (16.6 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CCCCCCCC consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCCCCCC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrV:4491673-4491753 57 5.90e-06 TCTTTGCCCC CCCCCCCC CCTTCCCCAA chrIV:1905374-1905454 38 5.90e-06 cctccccccc cccccccc TGCTTTTGCT chrI:14070757-14070837 46 5.90e-06 CTGTTCTTCA cccccccc cccccccccc chrV:20756351-20756431 35 5.90e-06 GGAAcccccc cccccccc cccccccccc chrV:19723004-19723084 8 1.34e-05 CGCCCTT CCCTCCCC GCCGACCATC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCCCCCC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:4491673-4491753 5.9e-06 56_[+4]_16 chrIV:1905374-1905454 5.9e-06 37_[+4]_35 chrI:14070757-14070837 5.9e-06 45_[+4]_27 chrV:20756351-20756431 5.9e-06 34_[+4]_38 chrV:19723004-19723084 1.3e-05 7_[+4]_65 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCCCCCC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCCCCCCC width=8 seqs=5 chrV:4491673-4491753 ( 57) CCCCCCCC 1 chrIV:1905374-1905454 ( 38) CCCCCCCC 1 chrI:14070757-14070837 ( 46) CCCCCCCC 1 chrV:20756351-20756431 ( 35) CCCCCCCC 1 chrV:19723004-19723084 ( 8) CCCTCCCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCCCCCC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 12.7769 E= 1.4e+003 -897 217 -897 -897 -897 217 -897 -897 -897 217 -897 -897 -897 185 -897 -49 -897 217 -897 -897 -897 217 -897 -897 -897 217 -897 -897 -897 217 -897 -897 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCCCCCC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 1.4e+003 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.800000 0.000000 0.200000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCCCCCC MEME-4 regular expression -------------------------------------------------------------------------------- CCC[CT]CCCC -------------------------------------------------------------------------------- Time 18.23 secs. ******************************************************************************** ******************************************************************************** MOTIF GCYGCCGC MEME-5 width = 8 sites = 12 llr = 120 E-value = 1.5e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCYGCCGC MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::3:::: pos.-specific C :a6:8a:a probability G a::8::a: matrix T ::4:3::: bits 2.2 ** *** 2.0 ** *** 1.7 ** *** 1.5 ** *** Relative 1.3 ** ***** Entropy 1.1 ******** (14.4 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GCCGCCGC consensus TAT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCYGCCGC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrI:9249378-9249458 53 6.06e-06 CCACCGCAAG GCCGCCGC ACGCTTTTAA chrX:15881173-15881253 71 6.06e-06 ACGGAAAAGC GCCGCCGC CG chrIII:3664377-3664457 62 1.38e-05 ATTTCGCAAC GCTGCCGC ACGTAGTTTA chrV:7231006-7231086 50 1.38e-05 TTTATGCAAT GCTGCCGC ACGAATTCCT chrX:9225429-9225509 44 1.38e-05 TAAAACACAC GCTGCCGC GCTCACCACC chrI:14948224-14948304 54 1.38e-05 ATTTTTATTC GCTGCCGC TCACCGCGCA chrV:18981130-18981210 62 2.11e-05 AGTTTCCTAG GCCACCGC CGGTGTACTC chrX:12181795-12181875 65 2.11e-05 AGAGGACGCC GCCACCGC CGTGTCGC chrV:20852170-20852250 42 2.11e-05 TTTCTGCAAG GCCACCGC ACAGGGGTGG chrIII:8417404-8417484 4 2.88e-05 CCC GCCGTCGC TGACAGCTTT chrI:1842100-1842180 3 2.88e-05 TC GCCGTCGC GTTGTCTCTC chrX:1517657-1517737 12 4.79e-05 GCACCGCACC GCTGTCGC ACAATAATAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCYGCCGC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:9249378-9249458 6.1e-06 52_[+5]_20 chrX:15881173-15881253 6.1e-06 70_[+5]_2 chrIII:3664377-3664457 1.4e-05 61_[+5]_11 chrV:7231006-7231086 1.4e-05 49_[+5]_23 chrX:9225429-9225509 1.4e-05 43_[+5]_29 chrI:14948224-14948304 1.4e-05 53_[+5]_19 chrV:18981130-18981210 2.1e-05 61_[+5]_11 chrX:12181795-12181875 2.1e-05 64_[+5]_8 chrV:20852170-20852250 2.1e-05 41_[+5]_31 chrIII:8417404-8417484 2.9e-05 3_[+5]_69 chrI:1842100-1842180 2.9e-05 2_[+5]_70 chrX:1517657-1517737 4.8e-05 11_[+5]_61 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCYGCCGC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCYGCCGC width=8 seqs=12 chrI:9249378-9249458 ( 53) GCCGCCGC 1 chrX:15881173-15881253 ( 71) GCCGCCGC 1 chrIII:3664377-3664457 ( 62) GCTGCCGC 1 chrV:7231006-7231086 ( 50) GCTGCCGC 1 chrX:9225429-9225509 ( 44) GCTGCCGC 1 chrI:14948224-14948304 ( 54) GCTGCCGC 1 chrV:18981130-18981210 ( 62) GCCACCGC 1 chrX:12181795-12181875 ( 65) GCCACCGC 1 chrV:20852170-20852250 ( 42) GCCACCGC 1 chrIII:8417404-8417484 ( 4) GCCGTCGC 1 chrI:1842100-1842180 ( 3) GCCGTCGC 1 chrX:1517657-1517737 ( 12) GCTGTCGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCYGCCGC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.6697 E= 1.5e+003 -1023 -1023 216 -1023 -1023 217 -1023 -1023 -1023 139 -1023 56 -12 -1023 174 -1023 -1023 176 -1023 -17 -1023 217 -1023 -1023 -1023 -1023 216 -1023 -1023 217 -1023 -1023 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCYGCCGC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 12 E= 1.5e+003 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.583333 0.000000 0.416667 0.250000 0.000000 0.750000 0.000000 0.000000 0.750000 0.000000 0.250000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCYGCCGC MEME-5 regular expression -------------------------------------------------------------------------------- GC[CT][GA][CT]CGC -------------------------------------------------------------------------------- Time 21.89 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:20065265-20065345 6.09e-01 80 chrV:18596418-18596498 5.44e-02 80 chrV:18843181-18843261 1.00e+00 80 chrV:20761908-20761988 2.20e-04 45_[+3(7.49e-06)]_27 chrV:11665044-11665124 1.62e-01 69_[+1(3.19e-05)]_3 chrII:2570823-2570903 9.47e-01 80 chrX:14571440-14571520 6.22e-01 80 chrV:19633547-19633627 9.85e-01 80 chrV:9451014-9451094 5.85e-01 80 chrM:168-248 1.00e+00 80 chrV:20075034-20075114 7.74e-01 80 chrV:20061688-20061768 1.08e-01 80 chrV:20281247-20281327 9.51e-01 80 chrV:19962227-19962307 9.99e-01 80 chrV:20073399-20073479 7.64e-03 [+1(5.94e-05)]_72 chrV:4800689-4800769 3.44e-01 80 chrI:7713922-7714002 9.98e-01 80 chrV:20431597-20431677 3.70e-01 80 chrV:18908370-18908450 1.00e+00 80 chrIV:8002725-8002805 3.68e-01 80 chrV:19341177-19341257 9.31e-01 80 chrV:20756351-20756431 1.51e-06 28_[+4(5.90e-06)]_[+4(5.90e-06)]_\ [+4(5.90e-06)]_[+3(5.28e-05)]_8_[+2(1.33e-05)]_4 chrV:20749229-20749309 9.99e-01 80 chrI:6151677-6151757 1.81e-02 80 chrV:20063844-20063924 8.28e-01 80 chrM:5529-5609 1.00e+00 80 chrV:18610143-18610223 1.00e+00 80 chrV:19391292-19391372 9.89e-01 80 chrM:5739-5819 1.00e+00 80 chrII:2455004-2455084 1.55e-01 80 chrI:3248541-3248621 7.11e-01 80 chrIV:4247818-4247898 9.95e-01 80 chrIV:14496620-14496700 1.37e-04 54_[+1(1.21e-05)]_18 chrV:20832709-20832789 9.96e-01 80 chrV:20053488-20053568 9.86e-01 80 chrX:5140286-5140366 8.50e-01 80 chrV:20002553-20002633 1.00e+00 80 chrI:3416618-3416698 1.00e+00 80 chrIV:4588622-4588702 2.50e-04 25_[+1(6.06e-06)]_47 chrV:18690972-18691052 9.99e-01 80 chrV:19637511-19637591 1.00e+00 80 chrIV:6648791-6648871 2.57e-01 80 chrV:20852170-20852250 5.53e-04 21_[+1(1.82e-05)]_12_[+5(2.11e-05)]_\ 31 chrV:20280012-20280092 1.51e-02 72_[+2(8.14e-05)] chrV:11674183-11674263 1.23e-01 80 chrV:11660780-11660860 8.75e-01 80 chrV:20760807-20760887 1.00e+00 80 chrX:15279487-15279567 7.24e-01 80 chrM:10010-10090 1.00e+00 80 chrV:20218778-20218858 3.97e-02 80 chrX:9494814-9494894 3.00e-04 14_[+2(8.14e-05)]_27_[+1(1.21e-05)]_\ 23 chrI:6175164-6175244 9.69e-01 80 chrM:2866-2946 8.71e-01 80 chrV:18913310-18913390 2.40e-04 [+3(1.70e-05)]_19_[+1(4.42e-05)]_45 chrII:4130437-4130517 3.48e-02 80 chrV:20018583-20018663 1.92e-01 80 chrV:19723004-19723084 5.81e-04 7_[+4(1.34e-05)]_65 chrX:12005946-12006026 3.17e-01 80 chrV:16699847-16699927 1.00e+00 80 chrV:3587770-3587850 9.00e-03 45_[+1(4.42e-05)]_27 chrIV:14875009-14875089 2.81e-01 54_[+2(9.48e-05)]_18 chrII:15264706-15264786 7.30e-02 80 chrV:18832988-18833068 1.00e+00 80 chrV:13576078-13576158 2.02e-01 80 chrV:20410475-20410555 8.57e-01 80 chrM:3669-3749 1.00e+00 80 chrX:7067757-7067837 1.32e-01 15_[+2(5.39e-05)]_57 chrI:13499092-13499172 9.98e-01 80 chrIV:12816239-12816319 1.59e-01 8_[+2(1.33e-05)]_64 chrX:5480404-5480484 9.61e-01 80 chrX:5123050-5123130 9.95e-01 80 chrM:10830-10910 1.00e+00 80 chrIV:2217347-2217427 6.82e-04 61_[+1(1.82e-05)]_11 chrI:14325526-14325606 9.98e-01 80 chrM:9379-9459 1.00e+00 80 chrV:20137542-20137622 2.22e-02 80 chrI:6882147-6882227 9.57e-01 80 chrX:1517657-1517737 6.28e-02 11_[+5(4.79e-05)]_61 chrV:19964945-19965025 1.00e+00 80 chrIV:1751644-1751724 3.49e-01 80 chrV:19082504-19082584 8.25e-01 80 chrM:1406-1486 1.00e+00 80 chrIII:1218311-1218391 4.39e-01 80 chrV:19127026-19127106 8.63e-01 80 chrV:19584597-19584677 5.34e-01 80 chrX:4484369-4484449 9.90e-01 80 chrX:6097695-6097775 2.39e-01 63_[+1(9.29e-05)]_9 chrM:7034-7114 1.00e+00 80 chrIII:3499994-3500074 6.24e-01 80 chrIV:13955716-13955796 4.23e-02 80 chrV:20729133-20729213 9.03e-01 80 chrIV:4399312-4399392 3.56e-01 80 chrX:2216851-2216931 2.21e-02 18_[+1(1.82e-05)]_54 chrIII:8132566-8132646 9.93e-01 80 chrII:7034185-7034265 5.85e-01 80 chrIII:13527869-13527949 5.87e-03 80 chrX:14331022-14331102 2.40e-01 80 chrV:10716976-10717056 1.17e-03 56_[+1(6.06e-06)]_16 chrV:9451214-9451294 6.94e-01 80 chrI:11280942-11281022 8.57e-01 80 chrV:19153419-19153499 2.02e-02 80 chrX:12181795-12181875 3.81e-03 64_[+5(2.11e-05)]_8 chrIV:5753335-5753415 9.93e-01 80 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******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c28n01.farnam.hpc.yale.internal ********************************************************************************