******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/worm/fasta/RankLinear2.0_40/pax-1.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrIV:10304542-10304622 1.0000 80 chrIV:17275527-17275607 1.0000 80 chrIV:341421-341501 1.0000 80 chrX:3307033-3307113 1.0000 80 chrIV:13086120-13086200 1.0000 80 chrIV:5806522-5806602 1.0000 80 chrX:5996412-5996492 1.0000 80 chrV:20062689-20062769 1.0000 80 chrX:9078788-9078868 1.0000 80 chrIII:10783211-10783291 1.0000 80 chrV:11945196-11945276 1.0000 80 chrX:7999101-7999181 1.0000 80 chrV:11335916-11335996 1.0000 80 chrIII:9353975-9354055 1.0000 80 chrI:14135768-14135848 1.0000 80 chrI:1295635-1295715 1.0000 80 chrI:4878569-4878649 1.0000 80 chrV:20335110-20335190 1.0000 80 chrX:10931628-10931708 1.0000 80 chrIV:6984826-6984906 1.0000 80 chrX:16422640-16422720 1.0000 80 chrX:9103235-9103315 1.0000 80 chrIII:5424563-5424643 1.0000 80 chrII:9313491-9313571 1.0000 80 chrV:20068548-20068628 1.0000 80 chrII:8223540-8223620 1.0000 80 chrIII:6073127-6073207 1.0000 80 chrX:4575349-4575429 1.0000 80 chrV:20761941-20762021 1.0000 80 chrII:13739564-13739644 1.0000 80 chrV:2264650-2264730 1.0000 80 chrIII:5980461-5980541 1.0000 80 chrIV:14833728-14833808 1.0000 80 chrX:7518857-7518937 1.0000 80 chrM:561-641 1.0000 80 chrM:6727-6807 1.0000 80 chrM:13602-13682 1.0000 80 chrIII:13182156-13182236 1.0000 80 chrIII:8512420-8512500 1.0000 80 chrIII:9092443-9092523 1.0000 80 chrII:9082237-9082317 1.0000 80 chrIII:13186085-13186165 1.0000 80 chrIII:8136664-8136744 1.0000 80 chrM:13129-13209 1.0000 80 chrII:11782595-11782675 1.0000 80 chrV:9724324-9724404 1.0000 80 chrI:7798738-7798818 1.0000 80 chrX:16944016-16944096 1.0000 80 chrM:3995-4075 1.0000 80 chrIV:8200420-8200500 1.0000 80 chrI:9733581-9733661 1.0000 80 chrV:11083709-11083789 1.0000 80 chrV:20749205-20749285 1.0000 80 chrX:13141399-13141479 1.0000 80 chrII:12349113-12349193 1.0000 80 chrIV:953923-954003 1.0000 80 chrI:14525865-14525945 1.0000 80 chrIII:12920054-12920134 1.0000 80 chrX:11297907-11297987 1.0000 80 chrI:3915921-3916001 1.0000 80 chrM:4196-4276 1.0000 80 chrV:8964277-8964357 1.0000 80 chrIV:6767388-6767468 1.0000 80 chrI:11693574-11693654 1.0000 80 chrX:14982737-14982817 1.0000 80 chrI:4308233-4308313 1.0000 80 chrM:10468-10548 1.0000 80 chrIV:10066669-10066749 1.0000 80 chrI:10830958-10831038 1.0000 80 chrII:8481235-8481315 1.0000 80 chrIV:8133814-8133894 1.0000 80 chrV:5983077-5983157 1.0000 80 chrX:10026409-10026489 1.0000 80 chrIII:13778879-13778959 1.0000 80 chrV:20341711-20341791 1.0000 80 chrI:7480194-7480274 1.0000 80 chrV:12897361-12897441 1.0000 80 chrX:9102262-9102342 1.0000 80 chrII:10232043-10232123 1.0000 80 chrIII:6170215-6170295 1.0000 80 chrIV:2704169-2704249 1.0000 80 chrIII:548696-548776 1.0000 80 chrX:8564589-8564669 1.0000 80 chrV:11340019-11340099 1.0000 80 chrX:12005813-12005893 1.0000 80 chrX:4462533-4462613 1.0000 80 chrI:5606941-5607021 1.0000 80 chrII:2454899-2454979 1.0000 80 chrI:3106621-3106701 1.0000 80 chrIV:14032891-14032971 1.0000 80 chrIII:2548498-2548578 1.0000 80 chrI:8046232-8046312 1.0000 80 chrX:13675521-13675601 1.0000 80 chrIV:6474887-6474967 1.0000 80 chrII:11637411-11637491 1.0000 80 chrX:11297266-11297346 1.0000 80 chrV:10718654-10718734 1.0000 80 chrM:7608-7688 1.0000 80 chrII:5081359-5081439 1.0000 80 chrII:13306408-13306488 1.0000 80 chrI:5590802-5590882 1.0000 80 chrX:7151358-7151438 1.0000 80 chrX:13669843-13669923 1.0000 80 chrM:11498-11578 1.0000 80 chrI:6047895-6047975 1.0000 80 chrIV:8334116-8334196 1.0000 80 chrI:6577182-6577262 1.0000 80 chrI:3466842-3466922 1.0000 80 chrM:11709-11789 1.0000 80 chrI:14808113-14808193 1.0000 80 chrII:11220957-11221037 1.0000 80 chrV:15664164-15664244 1.0000 80 chrI:10585394-10585474 1.0000 80 chrIII:9776309-9776389 1.0000 80 chrI:14067005-14067085 1.0000 80 chrII:11636474-11636554 1.0000 80 chrIII:3339737-3339817 1.0000 80 chrI:9839287-9839367 1.0000 80 chrI:15034057-15034137 1.0000 80 chrIII:13313927-13314007 1.0000 80 chrII:10785196-10785276 1.0000 80 chrI:9042895-9042975 1.0000 80 chrIV:7652739-7652819 1.0000 80 chrIII:13002280-13002360 1.0000 80 chrV:14736417-14736497 1.0000 80 chrV:13659852-13659932 1.0000 80 chrIII:8124456-8124536 1.0000 80 chrI:13688765-13688845 1.0000 80 chrII:66415-66495 1.0000 80 chrX:5123098-5123178 1.0000 80 chrIII:1220113-1220193 1.0000 80 chrIV:15573974-15574054 1.0000 80 chrIV:7486331-7486411 1.0000 80 chrIII:9126015-9126095 1.0000 80 chrIII:11425641-11425721 1.0000 80 chrI:10687989-10688069 1.0000 80 chrV:15143992-15144072 1.0000 80 chrI:4175019-4175099 1.0000 80 chrIII:6948071-6948151 1.0000 80 chrII:6943912-6943992 1.0000 80 chrV:6044041-6044121 1.0000 80 chrM:2449-2529 1.0000 80 chrI:108254-108334 1.0000 80 chrIII:5318524-5318604 1.0000 80 chrM:9498-9578 1.0000 80 chrI:5106157-5106237 1.0000 80 chrIV:16410240-16410320 1.0000 80 chrIV:3162317-3162397 1.0000 80 chrI:70101-70181 1.0000 80 chrIII:7376243-7376323 1.0000 80 chrIII:4313600-4313680 1.0000 80 chrV:20713205-20713285 1.0000 80 chrX:10991843-10991923 1.0000 80 chrM:9701-9781 1.0000 80 chrII:10948812-10948892 1.0000 80 chrIII:5584878-5584958 1.0000 80 chrIII:4109457-4109537 1.0000 80 chrX:10852093-10852173 1.0000 80 chrIV:16022560-16022640 1.0000 80 chrIV:5600348-5600428 1.0000 80 chrI:6541986-6542066 1.0000 80 chrV:5795865-5795945 1.0000 80 chrIII:3532226-3532306 1.0000 80 chrII:9063568-9063648 1.0000 80 chrIV:261764-261844 1.0000 80 chrI:6882057-6882137 1.0000 80 chrIV:11036397-11036477 1.0000 80 chrIV:14959654-14959734 1.0000 80 chrI:6175153-6175233 1.0000 80 chrV:9347012-9347092 1.0000 80 chrII:9284933-9285013 1.0000 80 chrX:1842326-1842406 1.0000 80 chrI:10435832-10435912 1.0000 80 chrX:10695172-10695252 1.0000 80 chrX:2981843-2981923 1.0000 80 chrI:6173073-6173153 1.0000 80 chrV:11674097-11674177 1.0000 80 chrIII:789886-789966 1.0000 80 chrIV:12999273-12999353 1.0000 80 chrIII:7317396-7317476 1.0000 80 chrX:13401413-13401493 1.0000 80 chrX:14701512-14701592 1.0000 80 chrIII:5855978-5856058 1.0000 80 chrI:5261742-5261822 1.0000 80 chrM:7813-7893 1.0000 80 chrI:3876922-3877002 1.0000 80 chrI:9271145-9271225 1.0000 80 chrIII:4721024-4721104 1.0000 80 chrII:4650110-4650190 1.0000 80 chrII:484595-484675 1.0000 80 chrI:3787720-3787800 1.0000 80 chrV:6101777-6101857 1.0000 80 chrII:11916311-11916391 1.0000 80 chrV:9247636-9247716 1.0000 80 chrI:11795292-11795372 1.0000 80 chrIII:3670980-3671060 1.0000 80 chrI:7472603-7472683 1.0000 80 chrI:6579951-6580031 1.0000 80 chrM:1314-1394 1.0000 80 chrIII:558107-558187 1.0000 80 chrIV:10734668-10734748 1.0000 80 chrI:5999364-5999444 1.0000 80 chrI:9087355-9087435 1.0000 80 chrIII:5423631-5423711 1.0000 80 chrI:826206-826286 1.0000 80 chrI:13653917-13653997 1.0000 80 chrII:14244642-14244722 1.0000 80 chrIV:6576878-6576958 1.0000 80 chrV:14136330-14136410 1.0000 80 chrI:14948161-14948241 1.0000 80 chrIV:16169850-16169930 1.0000 80 chrX:4962527-4962607 1.0000 80 chrII:12262760-12262840 1.0000 80 chrIII:3279381-3279461 1.0000 80 chrI:10122067-10122147 1.0000 80 chrIV:3338834-3338914 1.0000 80 chrIII:13713110-13713190 1.0000 80 chrII:5092517-5092597 1.0000 80 chrIV:255647-255727 1.0000 80 chrI:13475632-13475712 1.0000 80 chrIII:12688175-12688255 1.0000 80 chrI:7961885-7961965 1.0000 80 chrII:14404345-14404425 1.0000 80 chrI:9128829-9128909 1.0000 80 chrV:17921627-17921707 1.0000 80 chrM:10977-11057 1.0000 80 chrX:5475173-5475253 1.0000 80 chrII:8748162-8748242 1.0000 80 chrX:2089639-2089719 1.0000 80 chrIV:12268573-12268653 1.0000 80 chrI:15035924-15036004 1.0000 80 chrIII:3677543-3677623 1.0000 80 chrIV:6648820-6648900 1.0000 80 chrI:9581578-9581658 1.0000 80 chrI:6077401-6077481 1.0000 80 chrV:20424337-20424417 1.0000 80 chrV:2281658-2281738 1.0000 80 chrIV:6585566-6585646 1.0000 80 chrIII:12429867-12429947 1.0000 80 chrIV:8893942-8894022 1.0000 80 chrIII:11825787-11825867 1.0000 80 chrIII:86476-86556 1.0000 80 chrV:19644082-19644162 1.0000 80 chrI:5653596-5653676 1.0000 80 chrX:13396715-13396795 1.0000 80 chrIV:5091273-5091353 1.0000 80 chrII:11537444-11537524 1.0000 80 chrI:1842003-1842083 1.0000 80 chrI:5420433-5420513 1.0000 80 chrII:8325313-8325393 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/worm/inference_raw/MEME/RankLinear2.0_40_pax-1/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/worm/fasta/RankLinear2.0_40/pax-1.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.277 C 0.21 G 0.208 T 0.305 Background letter frequencies (from file dataset with add-one prior applied): A 0.277 C 0.21 G 0.208 T 0.305 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF AGAGASRS MEME-1 width = 8 sites = 45 llr = 377 E-value = 7.1e-013 ******************************************************************************** -------------------------------------------------------------------------------- Motif AGAGASRS MEME-1 Description -------------------------------------------------------------------------------- Simplified A a:a:a:51 pos.-specific C :::::6:3 probability G :a:a:444 matrix T :::::111 bits 2.3 * * 2.0 * * 1.8 ***** 1.6 ***** Relative 1.4 ***** Entropy 1.1 ***** (12.1 bits) 0.9 ****** 0.7 ******* 0.5 ******** 0.2 ******** 0.0 -------- Multilevel AGAGACAG consensus GGC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAGASRS MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrV:14136330-14136410 33 8.35e-06 TTCATagatg agagacgg cacgcgagac chrI:108254-108334 50 8.35e-06 AACAACTAAG AGAGACGG GAGGAGAGAT chrIII:3279381-3279461 45 1.95e-05 GCAGACAGTA AGAGACAG TAGAGAGTTT chrV:14736417-14736497 22 1.95e-05 AGAGGGGCAA AGAGACAG AGACATAACG chrIII:3339737-3339817 60 1.95e-05 tagaagggac agagacag agagagaacg chrV:12897361-12897441 4 1.95e-05 ATG AGAGACAG AGAGACATAC chrII:9313491-9313571 8 1.95e-05 AGTATTG AGAGACAG AGATAGGCAA chrV:20424337-20424417 71 2.79e-05 ATAATCTAGA AGAGACGC AG chrI:9581578-9581658 13 2.79e-05 TGTCCTTAAA AGAGACGC AGAGAAAAAG chrIII:3677543-3677623 47 2.79e-05 CCCagagatg agagacgc agagaaacag chrII:14244642-14244722 48 2.79e-05 TGAGCCCGTG AGAGACGC AGACATTAAC chrIV:14959654-14959734 26 2.79e-05 TAGAAAGATG AGAGACGC AGAGAGTGTG chrI:9042895-9042975 29 2.79e-05 AGCATACTGC AGAGACGC AGATTAAGAA chrIII:13313927-13314007 57 2.79e-05 TGTTTTGAAA AGAGACGC AGAGAACGGT chrII:12349113-12349193 42 2.79e-05 GTGGAGACCC AGAGACGC AGAGATTGAA chrIV:5806522-5806602 20 2.79e-05 ataagaaaga agagaCGC AAAGAAATAT chrX:4962527-4962607 48 3.62e-05 GAGTAGAGCG AGAGAGGG CATTTTGAGA chrIII:8136664-8136744 37 3.62e-05 CTTGACCGAG AGAGAGGG AGAAAGAAAA chrIV:14833728-14833808 45 3.62e-05 AATGACCCGT AGAGAGGG GGAAAAGAGA chrV:20068548-20068628 21 4.74e-05 ACATTGGGAC AGAGACAC ACAGCTACAG chrIII:10783211-10783291 8 4.74e-05 TCTCTAC AGAGACAC GCTACTGAAA chrI:13475632-13475712 4 5.84e-05 gag agagagag atacgagaga chrIV:15573974-15574054 58 5.84e-05 GGTTGgagag agagagag agtgaagaga chrIV:14032891-14032971 24 5.84e-05 GAGGGTGAAC AGAGAGAG ACAAGTGTCT chrX:16422640-16422720 9 5.84e-05 AGAGGGGG AGAGAGAG TTTATTTTCT chrI:6173073-6173153 19 6.68e-05 GCACACGTAC AGAGAGGC CTCTCTTCTT chrV:6044041-6044121 19 7.79e-05 TGTTTACTTT AGAGAGAC CACGTAACCG chrV:9247636-9247716 1 9.02e-05 . AGAGACGT AGACGTTTAG chrIV:6474887-6474967 34 9.02e-05 GTGACAAACA AGAGACGT AGAGATACAT chrIII:3670980-3671060 51 1.02e-04 AACGAGAATA AGAGACTG AGTAAATATT chrIII:13182156-13182236 57 1.02e-04 CGATTTAGTG AGAGACTG TTCTCCTATT chrI:6579951-6580031 7 1.19e-04 ACGGCT AGAGACAT TATGAAAATA chrIII:5855978-5856058 2 1.19e-04 C AGAGACAT TCTACGCTTT chrI:3106621-3106701 55 1.19e-04 GTGGAGGCGC AGAGACAT TTTGCATTCA chrIII:4721024-4721104 1 1.81e-04 . AGAGAGTG TGGGATTGCA chrIII:4109457-4109537 68 1.81e-04 GTTTGTATAA AGAGAGTG AAAAA chrI:13688765-13688845 26 1.81e-04 tgggaaaatg agagagtg tgagagagaa chrIII:6170215-6170295 53 1.81e-04 gagaagaagg agagacaa tgatgaagaa chrI:9271145-9271225 43 1.97e-04 ATCTCCAAAA AGAGAGAT GACAAAAAAG chrII:4650110-4650190 4 2.08e-04 CCG AGAGAGGA AATTGAGATG chrIII:6948071-6948151 20 2.48e-04 ACACACAGAC AGAGAGAA AAAGAAAGAA chrI:7798738-7798818 3 2.48e-04 AT AGAGAGAA ATAGTTGAAA chrI:7480194-7480274 58 2.64e-04 AAGAATTGCA AGAGATAG AGAATTAGAC chrI:6882057-6882137 3 2.76e-04 GA AGAGATGC AGACGGCTCC chrIII:11425641-11425721 65 2.92e-04 GGAAAACCTG AGAGATAC GAGACGAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAGASRS MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:14136330-14136410 8.4e-06 32_[+1]_40 chrI:108254-108334 8.4e-06 49_[+1]_23 chrIII:3279381-3279461 1.9e-05 44_[+1]_28 chrV:14736417-14736497 1.9e-05 21_[+1]_51 chrIII:3339737-3339817 1.9e-05 59_[+1]_13 chrV:12897361-12897441 1.9e-05 3_[+1]_69 chrII:9313491-9313571 1.9e-05 7_[+1]_65 chrV:20424337-20424417 2.8e-05 70_[+1]_2 chrI:9581578-9581658 2.8e-05 12_[+1]_60 chrIII:3677543-3677623 2.8e-05 46_[+1]_26 chrII:14244642-14244722 2.8e-05 47_[+1]_25 chrIV:14959654-14959734 2.8e-05 25_[+1]_47 chrI:9042895-9042975 2.8e-05 28_[+1]_44 chrIII:13313927-13314007 2.8e-05 56_[+1]_16 chrII:12349113-12349193 2.8e-05 41_[+1]_31 chrIV:5806522-5806602 2.8e-05 19_[+1]_53 chrX:4962527-4962607 3.6e-05 47_[+1]_25 chrIII:8136664-8136744 3.6e-05 36_[+1]_36 chrIV:14833728-14833808 3.6e-05 44_[+1]_28 chrV:20068548-20068628 4.7e-05 20_[+1]_52 chrIII:10783211-10783291 4.7e-05 7_[+1]_65 chrI:13475632-13475712 5.8e-05 3_[+1]_69 chrIV:15573974-15574054 5.8e-05 57_[+1]_15 chrIV:14032891-14032971 5.8e-05 23_[+1]_49 chrX:16422640-16422720 5.8e-05 8_[+1]_64 chrI:6173073-6173153 6.7e-05 18_[+1]_54 chrV:6044041-6044121 7.8e-05 18_[+1]_54 chrV:9247636-9247716 9e-05 [+1]_72 chrIV:6474887-6474967 9e-05 33_[+1]_39 chrIII:3670980-3671060 0.0001 50_[+1]_22 chrIII:13182156-13182236 0.0001 56_[+1]_16 chrI:6579951-6580031 0.00012 6_[+1]_66 chrIII:5855978-5856058 0.00012 1_[+1]_71 chrI:3106621-3106701 0.00012 54_[+1]_18 chrIII:4721024-4721104 0.00018 [+1]_72 chrIII:4109457-4109537 0.00018 67_[+1]_5 chrI:13688765-13688845 0.00018 25_[+1]_47 chrIII:6170215-6170295 0.00018 52_[+1]_20 chrI:9271145-9271225 0.0002 42_[+1]_30 chrII:4650110-4650190 0.00021 3_[+1]_69 chrIII:6948071-6948151 0.00025 19_[+1]_53 chrI:7798738-7798818 0.00025 2_[+1]_70 chrI:7480194-7480274 0.00026 57_[+1]_15 chrI:6882057-6882137 0.00028 2_[+1]_70 chrIII:11425641-11425721 0.00029 64_[+1]_8 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAGASRS MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AGAGASRS width=8 seqs=45 chrV:14136330-14136410 ( 33) AGAGACGG 1 chrI:108254-108334 ( 50) AGAGACGG 1 chrIII:3279381-3279461 ( 45) AGAGACAG 1 chrV:14736417-14736497 ( 22) AGAGACAG 1 chrIII:3339737-3339817 ( 60) AGAGACAG 1 chrV:12897361-12897441 ( 4) AGAGACAG 1 chrII:9313491-9313571 ( 8) AGAGACAG 1 chrV:20424337-20424417 ( 71) AGAGACGC 1 chrI:9581578-9581658 ( 13) AGAGACGC 1 chrIII:3677543-3677623 ( 47) AGAGACGC 1 chrII:14244642-14244722 ( 48) AGAGACGC 1 chrIV:14959654-14959734 ( 26) AGAGACGC 1 chrI:9042895-9042975 ( 29) AGAGACGC 1 chrIII:13313927-13314007 ( 57) AGAGACGC 1 chrII:12349113-12349193 ( 42) AGAGACGC 1 chrIV:5806522-5806602 ( 20) AGAGACGC 1 chrX:4962527-4962607 ( 48) AGAGAGGG 1 chrIII:8136664-8136744 ( 37) AGAGAGGG 1 chrIV:14833728-14833808 ( 45) AGAGAGGG 1 chrV:20068548-20068628 ( 21) AGAGACAC 1 chrIII:10783211-10783291 ( 8) AGAGACAC 1 chrI:13475632-13475712 ( 4) AGAGAGAG 1 chrIV:15573974-15574054 ( 58) AGAGAGAG 1 chrIV:14032891-14032971 ( 24) AGAGAGAG 1 chrX:16422640-16422720 ( 9) AGAGAGAG 1 chrI:6173073-6173153 ( 19) AGAGAGGC 1 chrV:6044041-6044121 ( 19) AGAGAGAC 1 chrV:9247636-9247716 ( 1) AGAGACGT 1 chrIV:6474887-6474967 ( 34) AGAGACGT 1 chrIII:3670980-3671060 ( 51) AGAGACTG 1 chrIII:13182156-13182236 ( 57) AGAGACTG 1 chrI:6579951-6580031 ( 7) AGAGACAT 1 chrIII:5855978-5856058 ( 2) AGAGACAT 1 chrI:3106621-3106701 ( 55) AGAGACAT 1 chrIII:4721024-4721104 ( 1) AGAGAGTG 1 chrIII:4109457-4109537 ( 68) AGAGAGTG 1 chrI:13688765-13688845 ( 26) AGAGAGTG 1 chrIII:6170215-6170295 ( 53) AGAGACAA 1 chrI:9271145-9271225 ( 43) AGAGAGAT 1 chrII:4650110-4650190 ( 4) AGAGAGGA 1 chrIII:6948071-6948151 ( 20) AGAGAGAA 1 chrI:7798738-7798818 ( 3) AGAGAGAA 1 chrI:7480194-7480274 ( 58) AGAGATAG 1 chrI:6882057-6882137 ( 3) AGAGATGC 1 chrIII:11425641-11425721 ( 65) AGAGATAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAGASRS MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.2095 E= 7.1e-013 185 -1214 -1214 -1214 -1214 -1214 227 -1214 185 -1214 -1214 -1214 -1214 -1214 227 -1214 185 -1214 -1214 -1214 -1214 146 78 -219 75 -1214 102 -146 -164 66 110 -119 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAGASRS MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 45 E= 7.1e-013 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.577778 0.355556 0.066667 0.466667 0.000000 0.422222 0.111111 0.088889 0.333333 0.444444 0.133333 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAGASRS MEME-1 regular expression -------------------------------------------------------------------------------- AGAGA[CG][AG][GC] -------------------------------------------------------------------------------- Time 10.58 secs. ******************************************************************************** ******************************************************************************** MOTIF TGCGTCTC MEME-2 width = 8 sites = 48 llr = 395 E-value = 2.1e-012 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGCGTCTC MEME-2 Description -------------------------------------------------------------------------------- Simplified A ::::::1: pos.-specific C :361:9:a probability G :718:1:: matrix T a:3:a19: bits 2.3 * 2.0 * 1.8 * * 1.6 * *** * Relative 1.4 ** *** * Entropy 1.1 ** ***** (11.9 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TGCGTCTC consensus CT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCGTCTC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrV:20424337-20424417 20 1.14e-05 tctcactctc tgcgtctc tctgtctctc chrI:5999364-5999444 30 1.14e-05 TCGAAATATC TGCGTCTC TCACATTTAT chrIV:12999273-12999353 26 1.14e-05 TTTTGCACTC TGCGTCTC CGTGATCAGT chrV:11674097-11674177 37 1.14e-05 GATTATGCTC TGCGTCTC TTCAATCAAC chrI:6882057-6882137 63 1.14e-05 TTTTTAAGTC TGCGTCTC ACTGAACTTG chrI:70101-70181 28 1.14e-05 TCTACCTGCC TGCGTCTC CTCGGTACCA chrV:15143992-15144072 17 1.14e-05 TCTCACTTTC TGCGTCTC TTCAGTTTTG chrIII:1220113-1220193 42 1.14e-05 TAAGTATGTC TGCGTCTC TCCGACGTCC chrII:5081359-5081439 28 1.14e-05 AGTCTTTCTC TGCGTCTC CTCTTCTTGT chrIV:14032891-14032971 41 1.14e-05 GACAAGTGTC TGCGTCTC AAGGGTCAAC chrV:20749205-20749285 37 1.14e-05 CATTTTCTTC TGCGTCTC TTTGACCCAA chrIII:13182156-13182236 10 1.14e-05 cGAAATCTC TGCGTCTC TATTAACAAG chrIV:6585566-6585646 18 2.28e-05 GCATTGTGTC TCCGTCTC CATAATTTAT chrIII:13002280-13002360 72 2.28e-05 TCTGCTCATC TCCGTCTC T chrIII:548696-548776 4 2.28e-05 CTC TCCGTCTC TCATTTTCCC chrIV:6648820-6648900 6 3.94e-05 TTCTC TGTGTCTC TCTGATTCAC chrIII:13713110-13713190 12 3.94e-05 TCGTGCTCTC TGTGTCTC GCCCGACTAT chrIII:5318524-5318604 73 3.94e-05 gctcgtatcc tgtgtctc chrIV:7486331-7486411 60 3.94e-05 ACAGAGTCTC TGTGTCTC AAATTTACAT chrI:9839287-9839367 31 3.94e-05 TTTTATATCC TGTGTCTC TTATATATTT chrI:10435832-10435912 27 6.21e-05 AATGTGCCGA TGGGTCTC GCCACGAAAT chrI:4175019-4175099 28 6.21e-05 AAATACGGGA TGGGTCTC ACCACGGCCA chrI:5590802-5590882 54 6.21e-05 TCACATACAG TGCCTCTC TTCAACCAAG chrV:20068548-20068628 50 6.21e-05 ACCCCATGCC TGGGTCTC CAGTAACCTC chrV:2281658-2281738 65 7.88e-05 GTCATTCTTT TCTGTCTC TCGGCAAC chrI:10585394-10585474 20 7.88e-05 ACACTTTGTC TCTGTCTC TCGAGGTCAC chrIV:11036397-11036477 33 8.91e-05 TCGTTTTCTC TGCGTCAC AACGCCACGT chrIV:255647-255727 3 1.23e-04 GT TGCGTGTC TGCAAGTCCG chrIV:6576878-6576958 57 1.23e-04 TATCTCTTTC TCCCTCTC TTGCGTTTTA chrIV:7652739-7652819 28 1.23e-04 GCGCCAGTGA TGCGTGTC TAATGCCGGC chrX:13675521-13675601 24 1.23e-04 TCTAACCACC TGCGTGTC TGCATATCCG chrII:2454899-2454979 17 1.23e-04 ACAGCTCTGC TCGGTCTC CTCGAAATCC chrX:8564589-8564669 32 1.23e-04 CTGCTTCTTT TCGGTCTC TTGCGATTCT chrX:9102262-9102342 19 1.23e-04 CCCACTTCTC TCCCTCTC GTACTCTTTG chrV:9347012-9347092 50 1.31e-04 CAAATTCAAA TGCGTCCC CGAATAATTG chrII:11220957-11221037 33 1.56e-04 CTGCGGGTAC TGTCTCTC TCTCTTTTTC chrII:10232043-10232123 71 1.56e-04 CCGAATTGAG TGTCTCTC TT chrIV:6767388-6767468 37 1.72e-04 TCTATCCATC TGCGTTTC TATTGCTATG chrI:9733581-9733661 40 1.72e-04 TGTGATTGTT TGCGTTTC TTCTCATAAA chrI:10830958-10831038 5 1.94e-04 TTTC TCCGTCAC TCGGAAACCA chrV:11945196-11945276 67 2.28e-04 ATGTACTTGG TGTGTCAC CGGACA chrIV:12268573-12268653 27 2.69e-04 CCGAGGAACA GCCGTCTC ACTAAATTGA chrI:9128829-9128909 41 2.69e-04 CTAATTCTCT TCTCTCTC CTACCTATTT chrIII:7317396-7317476 73 2.69e-04 attttgttca tctctctc chrIV:8334116-8334196 66 2.80e-04 AACACTGAGA TGTGTCCC TGCAGGG chrIII:4313600-4313680 13 3.08e-04 AATACGACAC TCCGTTTC CCGCTAAACA chrIII:13186085-13186165 22 3.08e-04 ACTACAAGTA GGTGTCTC TGACATTCTC chrX:13401413-13401493 43 3.25e-04 TGTTTCGAAA TGCTTCTC GCATCTTTTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCGTCTC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:20424337-20424417 1.1e-05 19_[+2]_53 chrI:5999364-5999444 1.1e-05 29_[+2]_43 chrIV:12999273-12999353 1.1e-05 25_[+2]_47 chrV:11674097-11674177 1.1e-05 36_[+2]_36 chrI:6882057-6882137 1.1e-05 62_[+2]_10 chrI:70101-70181 1.1e-05 27_[+2]_45 chrV:15143992-15144072 1.1e-05 16_[+2]_56 chrIII:1220113-1220193 1.1e-05 41_[+2]_31 chrII:5081359-5081439 1.1e-05 27_[+2]_45 chrIV:14032891-14032971 1.1e-05 40_[+2]_32 chrV:20749205-20749285 1.1e-05 36_[+2]_36 chrIII:13182156-13182236 1.1e-05 9_[+2]_63 chrIV:6585566-6585646 2.3e-05 17_[+2]_55 chrIII:13002280-13002360 2.3e-05 71_[+2]_1 chrIII:548696-548776 2.3e-05 3_[+2]_69 chrIV:6648820-6648900 3.9e-05 5_[+2]_67 chrIII:13713110-13713190 3.9e-05 11_[+2]_61 chrIII:5318524-5318604 3.9e-05 72_[+2] chrIV:7486331-7486411 3.9e-05 59_[+2]_13 chrI:9839287-9839367 3.9e-05 30_[+2]_42 chrI:10435832-10435912 6.2e-05 26_[+2]_46 chrI:4175019-4175099 6.2e-05 27_[+2]_45 chrI:5590802-5590882 6.2e-05 53_[+2]_19 chrV:20068548-20068628 6.2e-05 49_[+2]_23 chrV:2281658-2281738 7.9e-05 64_[+2]_8 chrI:10585394-10585474 7.9e-05 19_[+2]_53 chrIV:11036397-11036477 8.9e-05 32_[+2]_40 chrIV:255647-255727 0.00012 2_[+2]_70 chrIV:6576878-6576958 0.00012 56_[+2]_16 chrIV:7652739-7652819 0.00012 27_[+2]_45 chrX:13675521-13675601 0.00012 23_[+2]_49 chrII:2454899-2454979 0.00012 16_[+2]_56 chrX:8564589-8564669 0.00012 31_[+2]_41 chrX:9102262-9102342 0.00012 18_[+2]_54 chrV:9347012-9347092 0.00013 49_[+2]_23 chrII:11220957-11221037 0.00016 32_[+2]_40 chrII:10232043-10232123 0.00016 70_[+2]_2 chrIV:6767388-6767468 0.00017 36_[+2]_36 chrI:9733581-9733661 0.00017 39_[+2]_33 chrI:10830958-10831038 0.00019 4_[+2]_68 chrV:11945196-11945276 0.00023 66_[+2]_6 chrIV:12268573-12268653 0.00027 26_[+2]_46 chrI:9128829-9128909 0.00027 40_[+2]_32 chrIII:7317396-7317476 0.00027 72_[+2] chrIV:8334116-8334196 0.00028 65_[+2]_7 chrIII:4313600-4313680 0.00031 12_[+2]_60 chrIII:13186085-13186165 0.00031 21_[+2]_51 chrX:13401413-13401493 0.00033 42_[+2]_30 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCGTCTC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGCGTCTC width=8 seqs=48 chrV:20424337-20424417 ( 20) TGCGTCTC 1 chrI:5999364-5999444 ( 30) TGCGTCTC 1 chrIV:12999273-12999353 ( 26) TGCGTCTC 1 chrV:11674097-11674177 ( 37) TGCGTCTC 1 chrI:6882057-6882137 ( 63) TGCGTCTC 1 chrI:70101-70181 ( 28) TGCGTCTC 1 chrV:15143992-15144072 ( 17) TGCGTCTC 1 chrIII:1220113-1220193 ( 42) TGCGTCTC 1 chrII:5081359-5081439 ( 28) TGCGTCTC 1 chrIV:14032891-14032971 ( 41) TGCGTCTC 1 chrV:20749205-20749285 ( 37) TGCGTCTC 1 chrIII:13182156-13182236 ( 10) TGCGTCTC 1 chrIV:6585566-6585646 ( 18) TCCGTCTC 1 chrIII:13002280-13002360 ( 72) TCCGTCTC 1 chrIII:548696-548776 ( 4) TCCGTCTC 1 chrIV:6648820-6648900 ( 6) TGTGTCTC 1 chrIII:13713110-13713190 ( 12) TGTGTCTC 1 chrIII:5318524-5318604 ( 73) TGTGTCTC 1 chrIV:7486331-7486411 ( 60) TGTGTCTC 1 chrI:9839287-9839367 ( 31) TGTGTCTC 1 chrI:10435832-10435912 ( 27) TGGGTCTC 1 chrI:4175019-4175099 ( 28) TGGGTCTC 1 chrI:5590802-5590882 ( 54) TGCCTCTC 1 chrV:20068548-20068628 ( 50) TGGGTCTC 1 chrV:2281658-2281738 ( 65) TCTGTCTC 1 chrI:10585394-10585474 ( 20) TCTGTCTC 1 chrIV:11036397-11036477 ( 33) TGCGTCAC 1 chrIV:255647-255727 ( 3) TGCGTGTC 1 chrIV:6576878-6576958 ( 57) TCCCTCTC 1 chrIV:7652739-7652819 ( 28) TGCGTGTC 1 chrX:13675521-13675601 ( 24) TGCGTGTC 1 chrII:2454899-2454979 ( 17) TCGGTCTC 1 chrX:8564589-8564669 ( 32) TCGGTCTC 1 chrX:9102262-9102342 ( 19) TCCCTCTC 1 chrV:9347012-9347092 ( 50) TGCGTCCC 1 chrII:11220957-11221037 ( 33) TGTCTCTC 1 chrII:10232043-10232123 ( 71) TGTCTCTC 1 chrIV:6767388-6767468 ( 37) TGCGTTTC 1 chrI:9733581-9733661 ( 40) TGCGTTTC 1 chrI:10830958-10831038 ( 5) TCCGTCAC 1 chrV:11945196-11945276 ( 67) TGTGTCAC 1 chrIV:12268573-12268653 ( 27) GCCGTCTC 1 chrI:9128829-9128909 ( 41) TCTCTCTC 1 chrIII:7317396-7317476 ( 73) TCTCTCTC 1 chrIV:8334116-8334196 ( 66) TGTGTCCC 1 chrIII:4313600-4313680 ( 13) TCCGTTTC 1 chrIII:13186085-13186165 ( 22) GGTGTCTC 1 chrX:13401413-13401493 ( 43) TGCTTCTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCGTCTC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.01532 E= 2.1e-012 -1223 -1223 -232 165 -1223 47 177 -1223 -1223 152 -100 -6 -1223 -53 200 -387 -1223 -1223 -1223 171 -1223 206 -173 -229 -215 -233 -1223 155 -1223 225 -1223 -1223 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCGTCTC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 48 E= 2.1e-012 0.000000 0.000000 0.041667 0.958333 0.000000 0.291667 0.708333 0.000000 0.000000 0.604167 0.104167 0.291667 0.000000 0.145833 0.833333 0.020833 0.000000 0.000000 0.000000 1.000000 0.000000 0.875000 0.062500 0.062500 0.062500 0.041667 0.000000 0.895833 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCGTCTC MEME-2 regular expression -------------------------------------------------------------------------------- T[GC][CT]GTCTC -------------------------------------------------------------------------------- Time 14.56 secs. ******************************************************************************** ******************************************************************************** MOTIF VRWGCGCG MEME-3 width = 8 sites = 24 llr = 217 E-value = 7.0e-002 ******************************************************************************** -------------------------------------------------------------------------------- Motif VRWGCGCG MEME-3 Description -------------------------------------------------------------------------------- Simplified A 445::::: pos.-specific C 2:1:a:a: probability G 36:a:a:a matrix T 1:3::::: bits 2.3 ***** 2.0 ***** 1.8 ***** 1.6 ***** Relative 1.4 ***** Entropy 1.1 * ***** (13.0 bits) 0.9 * ***** 0.7 * ***** 0.5 ******* 0.2 ******** 0.0 -------- Multilevel AGAGCGCG consensus GAT sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VRWGCGCG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:2981843-2981923 38 6.33e-06 TATGTACTAC AGAGCGCG GATATTTACT chrIII:5584878-5584958 13 6.33e-06 CGGTTCACCG AGAGCGCG CCTAGATCGT chrX:4462533-4462613 62 6.33e-06 CGTTGTCAAT AGAGCGCG TTTGCATTTT chrI:10830958-10831038 50 6.33e-06 GAATTGAAAT AGAGCGCG TTTGCTGAGG chrIII:12688175-12688255 49 1.11e-05 cgagttcggt ggagcgcg cctgcgttat chrI:3466842-3466922 52 1.11e-05 CTTGTGCGAT GGAGCGCG CTTGCTATTT chrII:12349113-12349193 72 1.11e-05 GGAGTTTATC GGAGCGCG A chrI:826206-826286 44 1.59e-05 AAGGCGCGCG CGAGCGCG ATCGTTTGTC chrX:14982737-14982817 48 3.13e-05 accgcgtgga aaagcgcg tgtactccac chrX:5996412-5996492 20 3.13e-05 TAGGAAACGA AGTGCGCG AGATAGAATA chrX:14701512-14701592 9 5.46e-05 TGCCAAGC CAAGCGCG CCCTTTGCAC chrI:6882057-6882137 36 5.46e-05 CGTGTTACAC CGTGCGCG CGGGAGCTCT chrI:6541986-6542066 59 5.46e-05 TGAATTAATG CAAGCGCG CTCTTTCGTC chrII:66415-66495 33 5.46e-05 TTACTTCCCG CGTGCGCG CTCACTCTTC chrII:8325313-8325393 23 6.86e-05 TGAAATTTGC AATGCGCG CACGCAGTTT chrX:13396715-13396795 63 6.86e-05 TCCGCTAAAC AATGCGCG CTTTTTGTGT chrI:15034057-15034137 45 6.86e-05 TTTGATTCTC AGCGCGCG CAACCAAATT chrIV:2704169-2704249 39 6.86e-05 GTTTGCGTAC AATGCGCG TCAGAGGCAA chrI:15035924-15036004 39 8.62e-05 CGAAATAACG GGCGCGCG TGTTGTTTAG chrIV:341421-341501 73 8.62e-05 CGTTAGCAAT GATGCGCG chrIV:255647-255727 39 1.20e-04 CAGAGAACTT TAAGCGCG ATGTTTGAAA chrIV:10734668-10734748 51 1.20e-04 TTGGCTAAAC TAAGCGCG ATGCGAAATA chrIII:8512420-8512500 13 1.20e-04 CACGGCGGCG TGTGCGCG GTGACTGCGG chrIII:86476-86556 64 1.25e-04 AGCGTCGTCA GACGCGCG CTGCGAGAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VRWGCGCG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:2981843-2981923 6.3e-06 37_[+3]_35 chrIII:5584878-5584958 6.3e-06 12_[+3]_60 chrX:4462533-4462613 6.3e-06 61_[+3]_11 chrI:10830958-10831038 6.3e-06 49_[+3]_23 chrIII:12688175-12688255 1.1e-05 48_[+3]_24 chrI:3466842-3466922 1.1e-05 51_[+3]_21 chrII:12349113-12349193 1.1e-05 71_[+3]_1 chrI:826206-826286 1.6e-05 43_[+3]_29 chrX:14982737-14982817 3.1e-05 47_[+3]_25 chrX:5996412-5996492 3.1e-05 19_[+3]_53 chrX:14701512-14701592 5.5e-05 8_[+3]_64 chrI:6882057-6882137 5.5e-05 35_[+3]_37 chrI:6541986-6542066 5.5e-05 58_[+3]_14 chrII:66415-66495 5.5e-05 32_[+3]_40 chrII:8325313-8325393 6.9e-05 22_[+3]_50 chrX:13396715-13396795 6.9e-05 62_[+3]_10 chrI:15034057-15034137 6.9e-05 44_[+3]_28 chrIV:2704169-2704249 6.9e-05 38_[+3]_34 chrI:15035924-15036004 8.6e-05 38_[+3]_34 chrIV:341421-341501 8.6e-05 72_[+3] chrIV:255647-255727 0.00012 38_[+3]_34 chrIV:10734668-10734748 0.00012 50_[+3]_22 chrIII:8512420-8512500 0.00012 12_[+3]_60 chrIII:86476-86556 0.00013 63_[+3]_9 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VRWGCGCG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF VRWGCGCG width=8 seqs=24 chrX:2981843-2981923 ( 38) AGAGCGCG 1 chrIII:5584878-5584958 ( 13) AGAGCGCG 1 chrX:4462533-4462613 ( 62) AGAGCGCG 1 chrI:10830958-10831038 ( 50) AGAGCGCG 1 chrIII:12688175-12688255 ( 49) GGAGCGCG 1 chrI:3466842-3466922 ( 52) GGAGCGCG 1 chrII:12349113-12349193 ( 72) GGAGCGCG 1 chrI:826206-826286 ( 44) CGAGCGCG 1 chrX:14982737-14982817 ( 48) AAAGCGCG 1 chrX:5996412-5996492 ( 20) AGTGCGCG 1 chrX:14701512-14701592 ( 9) CAAGCGCG 1 chrI:6882057-6882137 ( 36) CGTGCGCG 1 chrI:6541986-6542066 ( 59) CAAGCGCG 1 chrII:66415-66495 ( 33) CGTGCGCG 1 chrII:8325313-8325393 ( 23) AATGCGCG 1 chrX:13396715-13396795 ( 63) AATGCGCG 1 chrI:15034057-15034137 ( 45) AGCGCGCG 1 chrIV:2704169-2704249 ( 39) AATGCGCG 1 chrI:15035924-15036004 ( 39) GGCGCGCG 1 chrIV:341421-341501 ( 73) GATGCGCG 1 chrIV:255647-255727 ( 39) TAAGCGCG 1 chrIV:10734668-10734748 ( 51) TAAGCGCG 1 chrIII:8512420-8512500 ( 13) TGTGCGCG 1 chrIII:86476-86556 ( 64) GACGCGCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VRWGCGCG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.477 E= 7.0e-002 59 -1 27 -129 59 -1123 149 -1123 97 -75 -1123 13 -1123 -1123 227 -1123 -1123 225 -1123 -1123 -1123 -1123 227 -1123 -1123 225 -1123 -1123 -1123 -1123 227 -1123 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VRWGCGCG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 24 E= 7.0e-002 0.416667 0.208333 0.250000 0.125000 0.416667 0.000000 0.583333 0.000000 0.541667 0.125000 0.000000 0.333333 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VRWGCGCG MEME-3 regular expression -------------------------------------------------------------------------------- [AGC][GA][AT]GCGCG -------------------------------------------------------------------------------- Time 18.19 secs. ******************************************************************************** ******************************************************************************** MOTIF YGCTCCRC MEME-4 width = 8 sites = 14 llr = 141 E-value = 1.2e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif YGCTCCRC MEME-4 Description -------------------------------------------------------------------------------- Simplified A ::::::5: pos.-specific C 6:a:aa:a probability G :a:2::5: matrix T 4::8:::: bits 2.3 ** ** * 2.0 ** ** * 1.8 ** ** * 1.6 ** ** * Relative 1.4 ** ** * Entropy 1.1 ******** (14.5 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CGCTCCAC consensus T G G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGCTCCRC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrII:8325313-8325393 49 1.26e-05 TTTGCAAGGC CGCTCCAC GGAGAACAAT chrIII:11825787-11825867 48 1.26e-05 AGTGCAAACG CGCTCCAC CGAACAACCA chrI:7961885-7961965 24 1.26e-05 CAAGCTACCT CGCTCCAC TGCACTTTTC chrX:10695172-10695252 21 1.26e-05 TGTGCAAACA CGCTCCAC TATACCCCTC chrII:10948812-10948892 15 1.26e-05 CGCAATGTCG CGCTCCAC TGAAAACAAA chrI:15034057-15034137 17 1.26e-05 TGTACAAACG CGCTCCAC TGCTAATGCA chrIV:6585566-6585646 55 2.41e-05 CGGTTAAAAC CGCGCCGC ACTCGACATT chrII:8748162-8748242 4 2.41e-05 AAG TGCTCCGC TCGCGCGGTG chrIV:3338834-3338914 36 2.41e-05 TTACACGCGA CGCGCCGC ATTCCTAACc chrV:13659852-13659932 52 2.41e-05 CCGCTCGGAT TGCTCCGC ATTGTCTCTT chrIV:8133814-8133894 62 2.41e-05 GTATTGGTTA TGCTCCGC CTCATCTAGA chrII:8481235-8481315 49 2.41e-05 GTGTCCTCTA TGCTCCGC CCAATTTATC chrV:20062689-20062769 65 2.41e-05 TCCGTGACGC TGCTCCGC GAGCACAT chrV:5795865-5795945 50 3.94e-05 ACCTATCGCT CGCGCCAC ACTCCCCCCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGCTCCRC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:8325313-8325393 1.3e-05 48_[+4]_24 chrIII:11825787-11825867 1.3e-05 47_[+4]_25 chrI:7961885-7961965 1.3e-05 23_[+4]_49 chrX:10695172-10695252 1.3e-05 20_[+4]_52 chrII:10948812-10948892 1.3e-05 14_[+4]_58 chrI:15034057-15034137 1.3e-05 16_[+4]_56 chrIV:6585566-6585646 2.4e-05 54_[+4]_18 chrII:8748162-8748242 2.4e-05 3_[+4]_69 chrIV:3338834-3338914 2.4e-05 35_[+4]_37 chrV:13659852-13659932 2.4e-05 51_[+4]_21 chrIV:8133814-8133894 2.4e-05 61_[+4]_11 chrII:8481235-8481315 2.4e-05 48_[+4]_24 chrV:20062689-20062769 2.4e-05 64_[+4]_8 chrV:5795865-5795945 3.9e-05 49_[+4]_23 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGCTCCRC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF YGCTCCRC width=8 seqs=14 chrII:8325313-8325393 ( 49) CGCTCCAC 1 chrIII:11825787-11825867 ( 48) CGCTCCAC 1 chrI:7961885-7961965 ( 24) CGCTCCAC 1 chrX:10695172-10695252 ( 21) CGCTCCAC 1 chrII:10948812-10948892 ( 15) CGCTCCAC 1 chrI:15034057-15034137 ( 17) CGCTCCAC 1 chrIV:6585566-6585646 ( 55) CGCGCCGC 1 chrII:8748162-8748242 ( 4) TGCTCCGC 1 chrIV:3338834-3338914 ( 36) CGCGCCGC 1 chrV:13659852-13659932 ( 52) TGCTCCGC 1 chrIV:8133814-8133894 ( 62) TGCTCCGC 1 chrII:8481235-8481315 ( 49) TGCTCCGC 1 chrV:20062689-20062769 ( 65) TGCTCCGC 1 chrV:5795865-5795945 ( 50) CGCGCCAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGCTCCRC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.9532 E= 1.2e+001 -1045 161 -1045 23 -1045 -1045 227 -1045 -1045 225 -1045 -1045 -1045 -1045 4 136 -1045 225 -1045 -1045 -1045 225 -1045 -1045 85 -1045 127 -1045 -1045 225 -1045 -1045 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGCTCCRC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 14 E= 1.2e+001 0.000000 0.642857 0.000000 0.357143 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.214286 0.785714 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.500000 0.000000 0.500000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGCTCCRC MEME-4 regular expression -------------------------------------------------------------------------------- [CT]GC[TG]CC[AG]C -------------------------------------------------------------------------------- Time 21.73 secs. ******************************************************************************** ******************************************************************************** MOTIF AAAGAAAA MEME-5 width = 8 sites = 23 llr = 198 E-value = 1.6e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif AAAGAAAA MEME-5 Description -------------------------------------------------------------------------------- Simplified A 979:89aa pos.-specific C ::::2::: probability G 131a:1:: matrix T :::::::: bits 2.3 * 2.0 * 1.8 * ** 1.6 * ** Relative 1.4 * ** *** Entropy 1.1 ******** (12.4 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel AAAGAAAA consensus G C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAGAAAA MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIII:86476-86556 17 2.60e-05 CGGGAGAGAA AAAGAAAA GGATAAACAA chrV:9247636-9247716 33 2.60e-05 ACAGAAACGG AAAGAAAA CTGGGGGAAT chrI:5606941-5607021 62 2.60e-05 AGAAAATGGA AAAGAAAA GATGATGAGC chrI:11693574-11693654 11 2.60e-05 TTGAAAAACT AAAGAAAA TAAATTCCAC chrIV:8200420-8200500 17 2.60e-05 GAGAGGAATA AAAGAAAA GGGACCGCCG chrIII:8136664-8136744 47 2.60e-05 AGAGAGGGAG AAAGAAAA GCTTGGCATA chrII:9313491-9313571 54 2.60e-05 CGAAAACTTG AAAGAAAA GGCGGGGATC chrI:9581578-9581658 21 4.56e-05 AAAGAGACGC AGAGAAAA AGATTGCAAA chrIV:3338834-3338914 15 4.56e-05 CGAAAACCAC AGAGAAAA GGGTTACACG chrI:13688765-13688845 46 4.56e-05 agagagaaat agagaaaa agatagaAGG chrIII:13313927-13314007 22 6.53e-05 CCAAAATCCT AAAGCAAA TGTGCTCCAT chrX:12005813-12005893 45 6.53e-05 TGTTGGCAAA AAAGCAAA AACCTGAGAG chrV:2264650-2264730 20 6.53e-05 CAGGAGACTG AAAGCAAA TAGAAACAAT chrIII:5424563-5424643 52 6.53e-05 CCACGCACAA AAAGCAAA TTGTAGAAGG chrIV:6474887-6474967 6 1.19e-04 TCCTC GAAGAAAA CAAGAGATCG chrIII:2548498-2548578 58 1.19e-04 agacgaagaa gaagaaaa gaagTCGAGA chrV:9724324-9724404 12 1.19e-04 CTCCATTAGA AAAGAGAA ATAGAGATTG chrIV:14833728-14833808 56 1.19e-04 GAGAGGGGGA AAAGAGAA AGGGAACGGA chrIII:5980461-5980541 41 1.19e-04 ACAGagatga agagcaaa cgtaaataaa chrIII:13182156-13182236 25 1.39e-04 CTCTATTAAC AAGGAAAA GCTTTGCGGC chrIII:3339737-3339817 68 1.68e-04 acagagacag agagagaa cggaa chrX:3307033-3307113 7 1.68e-04 GATTAA GGAGAAAA GCCCGACACG chrI:9271145-9271225 71 2.12e-04 TAACAGGTAC AGGGAAAA AC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAGAAAA MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:86476-86556 2.6e-05 16_[+5]_56 chrV:9247636-9247716 2.6e-05 32_[+5]_40 chrI:5606941-5607021 2.6e-05 61_[+5]_11 chrI:11693574-11693654 2.6e-05 10_[+5]_62 chrIV:8200420-8200500 2.6e-05 16_[+5]_56 chrIII:8136664-8136744 2.6e-05 46_[+5]_26 chrII:9313491-9313571 2.6e-05 53_[+5]_19 chrI:9581578-9581658 4.6e-05 20_[+5]_52 chrIV:3338834-3338914 4.6e-05 14_[+5]_58 chrI:13688765-13688845 4.6e-05 45_[+5]_27 chrIII:13313927-13314007 6.5e-05 21_[+5]_51 chrX:12005813-12005893 6.5e-05 44_[+5]_28 chrV:2264650-2264730 6.5e-05 19_[+5]_53 chrIII:5424563-5424643 6.5e-05 51_[+5]_21 chrIV:6474887-6474967 0.00012 5_[+5]_67 chrIII:2548498-2548578 0.00012 57_[+5]_15 chrV:9724324-9724404 0.00012 11_[+5]_61 chrIV:14833728-14833808 0.00012 55_[+5]_17 chrIII:5980461-5980541 0.00012 40_[+5]_32 chrIII:13182156-13182236 0.00014 24_[+5]_48 chrIII:3339737-3339817 0.00017 67_[+5]_5 chrX:3307033-3307113 0.00017 6_[+5]_66 chrI:9271145-9271225 0.00021 70_[+5]_2 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAGAAAA MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AAAGAAAA width=8 seqs=23 chrIII:86476-86556 ( 17) AAAGAAAA 1 chrV:9247636-9247716 ( 33) AAAGAAAA 1 chrI:5606941-5607021 ( 62) AAAGAAAA 1 chrI:11693574-11693654 ( 11) AAAGAAAA 1 chrIV:8200420-8200500 ( 17) AAAGAAAA 1 chrIII:8136664-8136744 ( 47) AAAGAAAA 1 chrII:9313491-9313571 ( 54) AAAGAAAA 1 chrI:9581578-9581658 ( 21) AGAGAAAA 1 chrIV:3338834-3338914 ( 15) AGAGAAAA 1 chrI:13688765-13688845 ( 46) AGAGAAAA 1 chrIII:13313927-13314007 ( 22) AAAGCAAA 1 chrX:12005813-12005893 ( 45) AAAGCAAA 1 chrV:2264650-2264730 ( 20) AAAGCAAA 1 chrIII:5424563-5424643 ( 52) AAAGCAAA 1 chrIV:6474887-6474967 ( 6) GAAGAAAA 1 chrIII:2548498-2548578 ( 58) GAAGAAAA 1 chrV:9724324-9724404 ( 12) AAAGAGAA 1 chrIV:14833728-14833808 ( 56) AAAGAGAA 1 chrIII:5980461-5980541 ( 41) AGAGCAAA 1 chrIII:13182156-13182236 ( 25) AAGGAAAA 1 chrIII:3339737-3339817 ( 68) AGAGAGAA 1 chrX:3307033-3307113 ( 7) GGAGAAAA 1 chrI:9271145-9271225 ( 71) AGGGAAAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAGAAAA MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.6953 E= 1.6e+004 165 -1117 -67 -1117 133 -1117 55 -1117 172 -1117 -126 -1117 -1117 -1117 227 -1117 150 5 -1117 -1117 165 -1117 -67 -1117 185 -1117 -1117 -1117 185 -1117 -1117 -1117 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAGAAAA MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 23 E= 1.6e+004 0.869565 0.000000 0.130435 0.000000 0.695652 0.000000 0.304348 0.000000 0.913043 0.000000 0.086957 0.000000 0.000000 0.000000 1.000000 0.000000 0.782609 0.217391 0.000000 0.000000 0.869565 0.000000 0.130435 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAGAAAA MEME-5 regular expression -------------------------------------------------------------------------------- A[AG]AG[AC]AAA -------------------------------------------------------------------------------- Time 25.27 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:10304542-10304622 3.16e-01 80 chrIV:17275527-17275607 9.00e-01 80 chrIV:341421-341501 4.81e-02 72_[+3(8.62e-05)] chrX:3307033-3307113 2.42e-02 80 chrIV:13086120-13086200 4.39e-01 80 chrIV:5806522-5806602 9.96e-03 [+1(5.84e-05)]_11_[+1(2.79e-05)]_53 chrX:5996412-5996492 2.65e-02 19_[+3(3.13e-05)]_53 chrV:20062689-20062769 2.82e-03 64_[+4(2.41e-05)]_8 chrX:9078788-9078868 7.39e-01 80 chrIII:10783211-10783291 3.35e-02 7_[+1(4.74e-05)]_65 chrV:11945196-11945276 6.62e-02 80 chrX:7999101-7999181 5.73e-02 80 chrV:11335916-11335996 4.35e-01 80 chrIII:9353975-9354055 5.28e-02 80 chrI:14135768-14135848 7.78e-01 80 chrI:1295635-1295715 8.29e-01 80 chrI:4878569-4878649 6.89e-01 80 chrV:20335110-20335190 3.67e-01 80 chrX:10931628-10931708 3.87e-01 80 chrIV:6984826-6984906 5.66e-01 80 chrX:16422640-16422720 7.77e-02 8_[+1(5.84e-05)]_64 chrX:9103235-9103315 4.38e-01 80 chrIII:5424563-5424643 5.99e-02 51_[+5(6.53e-05)]_21 chrII:9313491-9313571 3.26e-04 7_[+1(1.95e-05)]_38_[+5(2.60e-05)]_\ 19 chrV:20068548-20068628 6.47e-03 20_[+1(4.74e-05)]_21_[+2(6.21e-05)]_\ 23 chrII:8223540-8223620 1.71e-01 80 chrIII:6073127-6073207 1.00e+00 80 chrX:4575349-4575429 4.31e-01 80 chrV:20761941-20762021 2.46e-01 80 chrII:13739564-13739644 5.59e-01 80 chrV:2264650-2264730 9.69e-02 19_[+5(6.53e-05)]_53 chrIII:5980461-5980541 2.32e-02 80 chrIV:14833728-14833808 3.48e-03 44_[+1(3.62e-05)]_28 chrX:7518857-7518937 9.34e-01 80 chrM:561-641 9.97e-01 80 chrM:6727-6807 1.00e+00 80 chrM:13602-13682 9.99e-01 80 chrIII:13182156-13182236 9.12e-05 9_[+2(1.14e-05)]_63 chrIII:8512420-8512500 8.11e-02 80 chrIII:9092443-9092523 3.57e-01 80 chrII:9082237-9082317 6.37e-01 80 chrIII:13186085-13186165 2.13e-01 80 chrIII:8136664-8136744 2.00e-03 36_[+1(3.62e-05)]_2_[+5(2.60e-05)]_\ 26 chrM:13129-13209 9.77e-01 80 chrII:11782595-11782675 2.06e-01 80 chrV:9724324-9724404 6.22e-02 80 chrI:7798738-7798818 2.90e-02 80 chrX:16944016-16944096 6.46e-01 80 chrM:3995-4075 9.45e-01 80 chrIV:8200420-8200500 1.84e-02 16_[+5(2.60e-05)]_56 chrI:9733581-9733661 4.42e-01 80 chrV:11083709-11083789 3.90e-01 80 chrV:20749205-20749285 6.33e-03 36_[+2(1.14e-05)]_36 chrX:13141399-13141479 4.96e-01 80 chrII:12349113-12349193 1.54e-03 41_[+1(2.79e-05)]_22_[+3(1.11e-05)]_\ 1 chrIV:953923-954003 9.17e-01 80 chrI:14525865-14525945 7.64e-01 80 chrIII:12920054-12920134 8.95e-01 80 chrX:11297907-11297987 5.99e-01 80 chrI:3915921-3916001 5.04e-01 80 chrM:4196-4276 9.37e-01 80 chrV:8964277-8964357 1.98e-01 80 chrIV:6767388-6767468 3.61e-01 80 chrI:11693574-11693654 1.62e-02 10_[+5(2.60e-05)]_62 chrX:14982737-14982817 8.05e-03 47_[+3(3.13e-05)]_25 chrI:4308233-4308313 9.79e-01 80 chrM:10468-10548 5.68e-01 80 chrIV:10066669-10066749 3.23e-01 80 chrI:10830958-10831038 2.20e-03 49_[+3(6.33e-06)]_23 chrII:8481235-8481315 8.34e-02 48_[+4(2.41e-05)]_24 chrIV:8133814-8133894 5.32e-03 61_[+4(2.41e-05)]_11 chrV:5983077-5983157 1.90e-01 80 chrX:10026409-10026489 2.07e-01 80 chrIII:13778879-13778959 8.34e-01 80 chrV:20341711-20341791 5.33e-01 80 chrI:7480194-7480274 1.26e-01 80 chrV:12897361-12897441 7.07e-03 3_[+1(1.95e-05)]_69 chrX:9102262-9102342 8.68e-02 80 chrII:10232043-10232123 7.73e-02 80 chrIII:6170215-6170295 6.07e-02 80 chrIV:2704169-2704249 2.38e-02 38_[+3(6.86e-05)]_34 chrIII:548696-548776 2.67e-02 3_[+2(2.28e-05)]_69 chrX:8564589-8564669 4.49e-01 80 chrV:11340019-11340099 4.66e-01 80 chrX:12005813-12005893 2.47e-02 44_[+5(6.53e-05)]_28 chrX:4462533-4462613 3.12e-02 61_[+3(6.33e-06)]_11 chrI:5606941-5607021 1.10e-03 49_[+5(2.60e-05)]_4_[+5(2.60e-05)]_\ 11 chrII:2454899-2454979 1.64e-01 80 chrI:3106621-3106701 5.68e-02 80 chrIV:14032891-14032971 1.95e-04 23_[+1(5.84e-05)]_9_[+2(1.14e-05)]_\ 32 chrIII:2548498-2548578 2.40e-01 80 chrI:8046232-8046312 8.44e-01 80 chrX:13675521-13675601 6.82e-02 80 chrIV:6474887-6474967 3.75e-03 33_[+1(9.02e-05)]_39 chrII:11637411-11637491 6.91e-01 80 chrX:11297266-11297346 4.15e-01 80 chrV:10718654-10718734 9.27e-01 80 chrM:7608-7688 7.16e-01 80 chrII:5081359-5081439 2.61e-02 27_[+2(1.14e-05)]_45 chrII:13306408-13306488 3.03e-01 80 chrI:5590802-5590882 2.48e-01 53_[+2(6.21e-05)]_19 chrX:7151358-7151438 5.42e-01 80 chrX:13669843-13669923 5.24e-01 80 chrM:11498-11578 9.96e-01 80 chrI:6047895-6047975 3.05e-01 80 chrIV:8334116-8334196 1.10e-01 80 chrI:6577182-6577262 7.05e-01 80 chrI:3466842-3466922 8.46e-02 51_[+3(1.11e-05)]_21 chrM:11709-11789 1.00e+00 80 chrI:14808113-14808193 9.00e-01 80 chrII:11220957-11221037 2.62e-01 80 chrV:15664164-15664244 3.76e-01 80 chrI:10585394-10585474 8.97e-02 19_[+2(7.88e-05)]_53 chrIII:9776309-9776389 9.67e-01 80 chrI:14067005-14067085 6.23e-01 80 chrII:11636474-11636554 9.91e-01 80 chrIII:3339737-3339817 7.07e-03 59_[+1(1.95e-05)]_13 chrI:9839287-9839367 2.26e-01 30_[+2(3.94e-05)]_42 chrI:15034057-15034137 6.38e-04 16_[+4(1.26e-05)]_20_[+3(6.86e-05)]_\ 28 chrIII:13313927-13314007 5.28e-04 21_[+5(6.53e-05)]_27_[+1(2.79e-05)]_\ 16 chrII:10785196-10785276 9.79e-01 80 chrI:9042895-9042975 8.09e-02 28_[+1(2.79e-05)]_44 chrIV:7652739-7652819 4.97e-02 80 chrIII:13002280-13002360 6.18e-02 71_[+2(2.28e-05)]_1 chrV:14736417-14736497 1.88e-02 21_[+1(1.95e-05)]_51 chrV:13659852-13659932 4.85e-02 51_[+4(2.41e-05)]_21 chrIII:8124456-8124536 3.54e-01 80 chrI:13688765-13688845 6.90e-03 45_[+5(4.56e-05)]_27 chrII:66415-66495 8.60e-02 32_[+3(5.46e-05)]_40 chrX:5123098-5123178 1.73e-01 80 chrIII:1220113-1220193 2.43e-02 41_[+2(1.14e-05)]_31 chrIV:15573974-15574054 7.17e-02 53_[+1(5.84e-05)]_19 chrIV:7486331-7486411 2.52e-02 59_[+2(3.94e-05)]_13 chrIII:9126015-9126095 5.07e-01 80 chrIII:11425641-11425721 1.60e-01 80 chrI:10687989-10688069 9.60e-01 80 chrV:15143992-15144072 7.48e-02 16_[+2(1.14e-05)]_56 chrI:4175019-4175099 1.11e-02 27_[+2(6.21e-05)]_45 chrIII:6948071-6948151 5.45e-03 21_[+5(4.56e-05)]_51 chrII:6943912-6943992 1.84e-01 80 chrV:6044041-6044121 6.86e-02 18_[+1(7.79e-05)]_54 chrM:2449-2529 1.00e+00 80 chrI:108254-108334 3.57e-03 49_[+1(8.35e-06)]_23 chrIII:5318524-5318604 6.05e-02 72_[+2(3.94e-05)] chrM:9498-9578 8.49e-01 80 chrI:5106157-5106237 6.58e-01 80 chrIV:16410240-16410320 1.85e-01 80 chrIV:3162317-3162397 7.91e-01 80 chrI:70101-70181 1.04e-01 27_[+2(1.14e-05)]_45 chrIII:7376243-7376323 7.98e-01 80 chrIII:4313600-4313680 2.66e-01 80 chrV:20713205-20713285 3.35e-01 80 chrX:10991843-10991923 7.84e-01 80 chrM:9701-9781 9.92e-01 80 chrII:10948812-10948892 5.74e-03 14_[+4(1.26e-05)]_58 chrIII:5584878-5584958 9.38e-03 12_[+3(6.33e-06)]_60 chrIII:4109457-4109537 3.03e-02 80 chrX:10852093-10852173 5.93e-02 80 chrIV:16022560-16022640 6.94e-01 80 chrIV:5600348-5600428 5.45e-01 80 chrI:6541986-6542066 8.23e-02 58_[+3(5.46e-05)]_14 chrV:5795865-5795945 7.04e-02 49_[+4(3.94e-05)]_23 chrIII:3532226-3532306 4.28e-01 80 chrII:9063568-9063648 4.43e-01 80 chrIV:261764-261844 1.61e-02 80 chrI:6882057-6882137 4.78e-05 35_[+3(5.46e-05)]_19_[+2(1.14e-05)]_\ 10 chrIV:11036397-11036477 1.23e-01 32_[+2(8.91e-05)]_40 chrIV:14959654-14959734 1.51e-02 25_[+1(2.79e-05)]_47 chrI:6175153-6175233 5.73e-02 80 chrV:9347012-9347092 2.33e-01 80 chrII:9284933-9285013 5.26e-01 80 chrX:1842326-1842406 7.39e-01 80 chrI:10435832-10435912 6.91e-03 26_[+2(6.21e-05)]_46 chrX:10695172-10695252 4.13e-02 20_[+4(1.26e-05)]_52 chrX:2981843-2981923 4.59e-03 37_[+3(6.33e-06)]_35 chrI:6173073-6173153 2.66e-02 18_[+1(6.68e-05)]_54 chrV:11674097-11674177 1.69e-02 36_[+2(1.14e-05)]_36 chrIII:789886-789966 7.01e-01 80 chrIV:12999273-12999353 3.45e-02 25_[+2(1.14e-05)]_47 chrIII:7317396-7317476 6.24e-01 80 chrX:13401413-13401493 5.63e-02 80 chrX:14701512-14701592 3.57e-02 8_[+3(5.46e-05)]_64 chrIII:5855978-5856058 1.07e-02 80 chrI:5261742-5261822 1.27e-01 80 chrM:7813-7893 9.90e-01 80 chrI:3876922-3877002 7.30e-01 80 chrI:9271145-9271225 4.69e-02 80 chrIII:4721024-4721104 3.38e-03 80 chrII:4650110-4650190 3.97e-02 80 chrII:484595-484675 6.65e-01 80 chrI:3787720-3787800 2.75e-01 80 chrV:6101777-6101857 8.58e-01 80 chrII:11916311-11916391 8.10e-01 80 chrV:9247636-9247716 1.46e-03 [+1(9.02e-05)]_24_[+5(2.60e-05)]_40 chrI:11795292-11795372 1.13e-01 80 chrIII:3670980-3671060 5.02e-02 80 chrI:7472603-7472683 5.74e-01 80 chrI:6579951-6580031 8.69e-02 80 chrM:1314-1394 9.69e-01 80 chrIII:558107-558187 9.41e-01 80 chrIV:10734668-10734748 1.26e-01 80 chrI:5999364-5999444 5.56e-02 29_[+2(1.14e-05)]_43 chrI:9087355-9087435 6.20e-02 80 chrIII:5423631-5423711 2.76e-01 80 chrI:826206-826286 2.13e-02 35_[+3(8.62e-05)]_[+3(1.59e-05)]_29 chrI:13653917-13653997 3.33e-01 80 chrII:14244642-14244722 3.35e-02 47_[+1(2.79e-05)]_25 chrIV:6576878-6576958 4.16e-01 80 chrV:14136330-14136410 7.50e-03 32_[+1(8.35e-06)]_40 chrI:14948161-14948241 4.35e-01 80 chrIV:16169850-16169930 5.22e-01 80 chrX:4962527-4962607 1.56e-02 47_[+1(3.62e-05)]_25 chrII:12262760-12262840 7.26e-01 80 chrIII:3279381-3279461 2.19e-02 24_[+1(5.84e-05)]_12_[+1(1.95e-05)]_\ 28 chrI:10122067-10122147 1.00e+00 80 chrIV:3338834-3338914 4.22e-04 14_[+5(4.56e-05)]_13_[+4(2.41e-05)]_\ 37 chrIII:13713110-13713190 5.04e-03 11_[+2(3.94e-05)]_61 chrII:5092517-5092597 2.85e-01 80 chrIV:255647-255727 8.98e-04 80 chrI:13475632-13475712 5.07e-02 1_[+1(5.84e-05)]_71 chrIII:12688175-12688255 5.33e-02 48_[+3(1.11e-05)]_24 chrI:7961885-7961965 6.64e-03 23_[+4(1.26e-05)]_49 chrII:14404345-14404425 2.95e-01 80 chrI:9128829-9128909 4.35e-01 80 chrV:17921627-17921707 4.69e-01 80 chrM:10977-11057 5.95e-01 80 chrX:5475173-5475253 4.47e-01 80 chrII:8748162-8748242 2.82e-02 3_[+4(2.41e-05)]_69 chrX:2089639-2089719 4.53e-01 80 chrIV:12268573-12268653 4.67e-02 80 chrI:15035924-15036004 3.15e-02 38_[+3(8.62e-05)]_34 chrIII:3677543-3677623 1.72e-02 46_[+1(2.79e-05)]_26 chrIV:6648820-6648900 1.35e-01 5_[+2(3.94e-05)]_67 chrI:9581578-9581658 3.59e-03 12_[+1(2.79e-05)]_[+5(4.56e-05)]_52 chrI:6077401-6077481 2.00e-01 80 chrV:20424337-20424417 1.56e-04 19_[+2(1.14e-05)]_[+2(7.88e-05)]_35_\ [+1(2.79e-05)]_2 chrV:2281658-2281738 1.29e-01 64_[+2(7.88e-05)]_8 chrIV:6585566-6585646 4.36e-04 17_[+2(2.28e-05)]_29_[+4(2.41e-05)]_\ 18 chrIII:12429867-12429947 7.12e-01 80 chrIV:8893942-8894022 9.43e-01 80 chrIII:11825787-11825867 7.99e-03 47_[+4(1.26e-05)]_25 chrIII:86476-86556 9.43e-05 16_[+5(2.60e-05)]_56 chrV:19644082-19644162 2.29e-01 80 chrI:5653596-5653676 1.81e-01 80 chrX:13396715-13396795 5.24e-03 35_[+3(8.62e-05)]_19_[+3(6.86e-05)]_\ 10 chrIV:5091273-5091353 6.47e-01 80 chrII:11537444-11537524 1.30e-01 80 chrI:1842003-1842083 6.48e-01 80 chrI:5420433-5420513 7.91e-01 80 chrII:8325313-8325393 1.06e-03 22_[+3(6.86e-05)]_18_[+4(1.26e-05)]_\ 24 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n08.farnam.hpc.yale.internal ********************************************************************************