******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/worm/fasta/RankLinear2.0_40/pat-9.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrI:10590637-10590717 1.0000 80 chrV:6204266-6204346 1.0000 80 chrIV:1108202-1108282 1.0000 80 chrV:14153788-14153868 1.0000 80 chrX:11035709-11035789 1.0000 80 chrIV:7098722-7098802 1.0000 80 chrX:11379494-11379574 1.0000 80 chrX:8053118-8053198 1.0000 80 chrI:5020154-5020234 1.0000 80 chrX:17459063-17459143 1.0000 80 chrI:7383286-7383366 1.0000 80 chrX:16525819-16525899 1.0000 80 chrI:14806576-14806656 1.0000 80 chrI:14628107-14628187 1.0000 80 chrV:11083895-11083975 1.0000 80 chrII:161449-161529 1.0000 80 chrII:13986223-13986303 1.0000 80 chrX:5056378-5056458 1.0000 80 chrII:4520361-4520441 1.0000 80 chrI:933476-933556 1.0000 80 chrV:265458-265538 1.0000 80 chrIII:96311-96391 1.0000 80 chrV:13393498-13393578 1.0000 80 chrX:16392353-16392433 1.0000 80 chrV:13869010-13869090 1.0000 80 chrI:6882063-6882143 1.0000 80 chrIII:11942855-11942935 1.0000 80 chrIII:5564946-5565026 1.0000 80 chrX:3900931-3901011 1.0000 80 chrII:12269056-12269136 1.0000 80 chrX:4957326-4957406 1.0000 80 chrIII:13224562-13224642 1.0000 80 chrI:1100766-1100846 1.0000 80 chrIV:5526955-5527035 1.0000 80 chrII:13056629-13056709 1.0000 80 chrIII:931566-931646 1.0000 80 chrI:2605362-2605442 1.0000 80 chrX:10394347-10394427 1.0000 80 chrI:11664928-11665008 1.0000 80 chrIV:1981112-1981192 1.0000 80 chrII:14019683-14019763 1.0000 80 chrX:6040895-6040975 1.0000 80 chrIV:11071028-11071108 1.0000 80 chrX:11821337-11821417 1.0000 80 chrV:20793982-20794062 1.0000 80 chrIII:5931692-5931772 1.0000 80 chrIII:1824647-1824727 1.0000 80 chrIII:4358484-4358564 1.0000 80 chrX:6410473-6410553 1.0000 80 chrI:5599560-5599640 1.0000 80 chrI:12225446-12225526 1.0000 80 chrV:6930533-6930613 1.0000 80 chrIV:5371064-5371144 1.0000 80 chrII:2995147-2995227 1.0000 80 chrIII:13779521-13779601 1.0000 80 chrX:5140296-5140376 1.0000 80 chrX:8723994-8724074 1.0000 80 chrX:8602852-8602932 1.0000 80 chrIII:4094802-4094882 1.0000 80 chrX:3914402-3914482 1.0000 80 chrIII:9640193-9640273 1.0000 80 chrIII:8684559-8684639 1.0000 80 chrV:1821378-1821458 1.0000 80 chrX:2322018-2322098 1.0000 80 chrI:1575721-1575801 1.0000 80 chrI:4224874-4224954 1.0000 80 chrIII:3499993-3500073 1.0000 80 chrV:7231001-7231081 1.0000 80 chrIII:10432266-10432346 1.0000 80 chrV:18720281-18720361 1.0000 80 chrX:14229607-14229687 1.0000 80 chrIV:1358171-1358251 1.0000 80 chrV:14689501-14689581 1.0000 80 chrV:20711955-20712035 1.0000 80 chrIII:6138658-6138738 1.0000 80 chrX:7153542-7153622 1.0000 80 chrI:2985174-2985254 1.0000 80 chrX:5354675-5354755 1.0000 80 chrV:12510128-12510208 1.0000 80 chrIII:5563913-5563993 1.0000 80 chrI:2299596-2299676 1.0000 80 chrIII:13293188-13293268 1.0000 80 chrI:14368137-14368217 1.0000 80 chrI:14862209-14862289 1.0000 80 chrX:16389462-16389542 1.0000 80 chrIII:12399860-12399940 1.0000 80 chrV:1471315-1471395 1.0000 80 chrX:10524635-10524715 1.0000 80 chrIV:9316202-9316282 1.0000 80 chrV:15505216-15505296 1.0000 80 chrX:14292764-14292844 1.0000 80 chrX:8156099-8156179 1.0000 80 chrX:3348023-3348103 1.0000 80 chrI:1720674-1720754 1.0000 80 chrV:13176501-13176581 1.0000 80 chrIII:3664392-3664472 1.0000 80 chrIII:13721341-13721421 1.0000 80 chrI:11609214-11609294 1.0000 80 chrIII:11380671-11380751 1.0000 80 chrII:7001638-7001718 1.0000 80 chrX:17456954-17457034 1.0000 80 chrX:9296741-9296821 1.0000 80 chrV:11309158-11309238 1.0000 80 chrIV:13695872-13695952 1.0000 80 chrI:1175826-1175906 1.0000 80 chrI:767282-767362 1.0000 80 chrV:16622017-16622097 1.0000 80 chrX:11576964-11577044 1.0000 80 chrX:7527955-7528035 1.0000 80 chrV:6709189-6709269 1.0000 80 chrIII:8022200-8022280 1.0000 80 chrV:4499352-4499432 1.0000 80 chrIII:6133578-6133658 1.0000 80 chrX:14684521-14684601 1.0000 80 chrI:6136562-6136642 1.0000 80 chrI:9268888-9268968 1.0000 80 chrII:11694639-11694719 1.0000 80 chrI:8901671-8901751 1.0000 80 chrIII:6344916-6344996 1.0000 80 chrIV:16398320-16398400 1.0000 80 chrIII:3471583-3471663 1.0000 80 chrI:6175154-6175234 1.0000 80 chrV:12233608-12233688 1.0000 80 chrV:6469434-6469514 1.0000 80 chrX:9300585-9300665 1.0000 80 chrX:16150249-16150329 1.0000 80 chrI:9474946-9475026 1.0000 80 chrX:16928237-16928317 1.0000 80 chrIII:4542481-4542561 1.0000 80 chrI:3873916-3873996 1.0000 80 chrIII:235315-235395 1.0000 80 chrX:12367630-12367710 1.0000 80 chrII:4130445-4130525 1.0000 80 chrV:4964485-4964565 1.0000 80 chrII:5399353-5399433 1.0000 80 chrI:4974752-4974832 1.0000 80 chrII:10545285-10545365 1.0000 80 chrX:15668370-15668450 1.0000 80 chrIII:445606-445686 1.0000 80 chrV:16598646-16598726 1.0000 80 chrII:7708727-7708807 1.0000 80 chrIII:4426778-4426858 1.0000 80 chrIV:8334215-8334295 1.0000 80 chrX:13532773-13532853 1.0000 80 chrIV:16498207-16498287 1.0000 80 chrIII:3916773-3916853 1.0000 80 chrI:1070020-1070100 1.0000 80 chrIII:11236931-11237011 1.0000 80 chrIV:16382389-16382469 1.0000 80 chrV:20713062-20713142 1.0000 80 chrX:3689455-3689535 1.0000 80 chrIV:16863674-16863754 1.0000 80 chrX:14115662-14115742 1.0000 80 chrII:7640306-7640386 1.0000 80 chrIII:3175153-3175233 1.0000 80 chrV:6880756-6880836 1.0000 80 chrII:11959385-11959465 1.0000 80 chrX:16602522-16602602 1.0000 80 chrI:10262306-10262386 1.0000 80 chrX:2885471-2885551 1.0000 80 chrII:3567805-3567885 1.0000 80 chrIII:9104215-9104295 1.0000 80 chrI:5140235-5140315 1.0000 80 chrII:14635363-14635443 1.0000 80 chrX:12890237-12890317 1.0000 80 chrII:6492003-6492083 1.0000 80 chrIII:11935992-11936072 1.0000 80 chrIV:9107675-9107755 1.0000 80 chrII:9060735-9060815 1.0000 80 chrX:5407440-5407520 1.0000 80 chrV:15554002-15554082 1.0000 80 chrX:17633274-17633354 1.0000 80 chrX:3116064-3116144 1.0000 80 chrIV:5038964-5039044 1.0000 80 chrX:12843641-12843721 1.0000 80 chrV:3587801-3587881 1.0000 80 chrV:11239372-11239452 1.0000 80 chrIV:3227609-3227689 1.0000 80 chrX:601628-601708 1.0000 80 chrV:4491467-4491547 1.0000 80 chrV:18712273-18712353 1.0000 80 chrII:476219-476299 1.0000 80 chrV:13962173-13962253 1.0000 80 chrIII:4508534-4508614 1.0000 80 chrII:6565248-6565328 1.0000 80 chrIII:1601620-1601700 1.0000 80 chrX:15600694-15600774 1.0000 80 chrIII:11203197-11203277 1.0000 80 chrX:8944197-8944277 1.0000 80 chrII:4942477-4942557 1.0000 80 chrIII:535318-535398 1.0000 80 chrX:16551435-16551515 1.0000 80 chrV:1805132-1805212 1.0000 80 chrII:4238050-4238130 1.0000 80 chrV:18723621-18723701 1.0000 80 chrV:14524362-14524442 1.0000 80 chrI:9374768-9374848 1.0000 80 chrI:9855531-9855611 1.0000 80 chrV:14697114-14697194 1.0000 80 chrIV:2665559-2665639 1.0000 80 chrX:14804818-14804898 1.0000 80 chrIII:12351452-12351532 1.0000 80 chrX:8638916-8638996 1.0000 80 chrIII:4426977-4427057 1.0000 80 chrI:14708117-14708197 1.0000 80 chrV:10681344-10681424 1.0000 80 chrIII:8650371-8650451 1.0000 80 chrX:7236894-7236974 1.0000 80 chrI:13310328-13310408 1.0000 80 chrII:5772946-5773026 1.0000 80 chrIV:16388448-16388528 1.0000 80 chrI:315208-315288 1.0000 80 chrIII:7659567-7659647 1.0000 80 chrI:14721581-14721661 1.0000 80 chrIV:11605063-11605143 1.0000 80 chrIII:3066056-3066136 1.0000 80 chrI:6283641-6283721 1.0000 80 chrV:14855811-14855891 1.0000 80 chrIV:2990597-2990677 1.0000 80 chrX:8386181-8386261 1.0000 80 chrIII:13225220-13225300 1.0000 80 chrIV:10403250-10403330 1.0000 80 chrIV:3654330-3654410 1.0000 80 chrX:17030657-17030737 1.0000 80 chrX:7478623-7478703 1.0000 80 chrIII:8874313-8874393 1.0000 80 chrIII:8106665-8106745 1.0000 80 chrIV:4026201-4026281 1.0000 80 chrV:1875728-1875808 1.0000 80 chrX:15275441-15275521 1.0000 80 chrIV:11857315-11857395 1.0000 80 chrV:11082734-11082814 1.0000 80 chrI:8530088-8530168 1.0000 80 chrIII:11792772-11792852 1.0000 80 chrI:1651380-1651460 1.0000 80 chrIV:957998-958078 1.0000 80 chrV:11641448-11641528 1.0000 80 chrIV:16946907-16946987 1.0000 80 chrI:882727-882807 1.0000 80 chrIII:1600824-1600904 1.0000 80 chrIII:5769855-5769935 1.0000 80 chrI:6407336-6407416 1.0000 80 chrI:488353-488433 1.0000 80 chrIII:7030615-7030695 1.0000 80 chrX:13781576-13781656 1.0000 80 chrI:7712577-7712657 1.0000 80 chrX:16604714-16604794 1.0000 80 chrX:12692150-12692230 1.0000 80 chrII:3521469-3521549 1.0000 80 chrX:8646412-8646492 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/worm/inference_raw/MEME/RankLinear2.0_40_pat-9/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/worm/fasta/RankLinear2.0_40/pat-9.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.244 C 0.252 G 0.259 T 0.244 Background letter frequencies (from file dataset with add-one prior applied): A 0.245 C 0.252 G 0.259 T 0.244 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF TKCTCTCT MEME-1 width = 8 sites = 23 llr = 209 E-value = 2.1e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif TKCTCTCT MEME-1 Description -------------------------------------------------------------------------------- Simplified A :::::1:: pos.-specific C ::9:a:8: probability G :3:::::: matrix T a61a:92a bits 2.0 * ** * 1.8 * ** * 1.6 * *** * 1.4 * ****** Relative 1.2 * ****** Entropy 1.0 * ****** (13.1 bits) 0.8 * ****** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TTCTCTCT consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKCTCTCT MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrV:20713062-20713142 6 1.38e-05 TCCTT TTCTCTCT CTTTCACTAG chrV:4499352-4499432 9 1.38e-05 TTGCCCGT TTCTCTCT CTTTCGGTGG chrI:14862209-14862289 23 1.38e-05 TCACAATACC TTCTCTCT TCTTTGCCAT chrI:2299596-2299676 46 1.38e-05 AGTCGGACCA TTCTCTCT CTCTCGCTTT chrI:2985174-2985254 66 1.38e-05 AAAtctctat ttctctct gcgtctc chrX:6410473-6410553 54 1.38e-05 GCTCTCGTCT TTCTCTCT GCCTGGGGCT chrI:933476-933556 36 1.38e-05 CCAATTATCT TTCTCTCT Gtggcttccc chrX:8053118-8053198 45 1.38e-05 TCCCTCCCGC TTCTCTCT TCCTACCGTG chrX:17456954-17457034 69 2.85e-05 GCCGTGTCTG TGCTCTCT TTGG chrV:6930533-6930613 51 2.85e-05 CTGCGTCTCG TGCTCTCT TGCAGGTGAT chrIII:4358484-4358564 33 2.85e-05 AAACACTTGT TGCTCTCT GCCACTTTTA chrII:161449-161529 41 2.85e-05 GGAGCTGTGA TGCTCTCT GTGCTATTAC chrX:14292764-14292844 3 4.19e-05 tc ttctcttt ctactactac chrI:8901671-8901751 45 5.58e-05 CTCCGTACGT TTCTCACT GGTCTCTCAT chrI:2605362-2605442 18 5.58e-05 ctttttcttc ttctcact tctAGTCCGC chrV:6469434-6469514 50 7.01e-05 TGAGCTGGTG TGCTCTTT ATCAACAGGG chrII:7001638-7001718 70 7.01e-05 AGTAAAGTTT TGCTCTTT TTC chrI:4224874-4224954 11 7.01e-05 CCGTTCGTTG TGCTCTTT CTACCCTCAC chrX:7478623-7478703 59 9.82e-05 GCCGTTCGTT TTTTCTCT CCCTTCCCTC chrIII:6344916-6344996 72 9.82e-05 ACTATTTCAC TTTTCTCT G chrIII:8022200-8022280 59 9.82e-05 CAGTGTTTAA TGCTCACT CAGGCGGGCT chrI:10262306-10262386 32 1.12e-04 CATTCAGAGA TACTCTCT AACTTCTTCA chrV:7231001-7231081 69 1.26e-04 CCGCACGAAT TCCTCTCT CAGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKCTCTCT MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:20713062-20713142 1.4e-05 5_[+1]_67 chrV:4499352-4499432 1.4e-05 8_[+1]_64 chrI:14862209-14862289 1.4e-05 22_[+1]_50 chrI:2299596-2299676 1.4e-05 45_[+1]_27 chrI:2985174-2985254 1.4e-05 65_[+1]_7 chrX:6410473-6410553 1.4e-05 53_[+1]_19 chrI:933476-933556 1.4e-05 35_[+1]_37 chrX:8053118-8053198 1.4e-05 44_[+1]_28 chrX:17456954-17457034 2.9e-05 68_[+1]_4 chrV:6930533-6930613 2.9e-05 50_[+1]_22 chrIII:4358484-4358564 2.9e-05 32_[+1]_40 chrII:161449-161529 2.9e-05 40_[+1]_32 chrX:14292764-14292844 4.2e-05 2_[+1]_70 chrI:8901671-8901751 5.6e-05 44_[+1]_28 chrI:2605362-2605442 5.6e-05 17_[+1]_55 chrV:6469434-6469514 7e-05 49_[+1]_23 chrII:7001638-7001718 7e-05 69_[+1]_3 chrI:4224874-4224954 7e-05 10_[+1]_62 chrX:7478623-7478703 9.8e-05 58_[+1]_14 chrIII:6344916-6344996 9.8e-05 71_[+1]_1 chrIII:8022200-8022280 9.8e-05 58_[+1]_14 chrI:10262306-10262386 0.00011 31_[+1]_41 chrV:7231001-7231081 0.00013 68_[+1]_4 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKCTCTCT MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TKCTCTCT width=8 seqs=23 chrV:20713062-20713142 ( 6) TTCTCTCT 1 chrV:4499352-4499432 ( 9) TTCTCTCT 1 chrI:14862209-14862289 ( 23) TTCTCTCT 1 chrI:2299596-2299676 ( 46) TTCTCTCT 1 chrI:2985174-2985254 ( 66) TTCTCTCT 1 chrX:6410473-6410553 ( 54) TTCTCTCT 1 chrI:933476-933556 ( 36) TTCTCTCT 1 chrX:8053118-8053198 ( 45) TTCTCTCT 1 chrX:17456954-17457034 ( 69) TGCTCTCT 1 chrV:6930533-6930613 ( 51) TGCTCTCT 1 chrIII:4358484-4358564 ( 33) TGCTCTCT 1 chrII:161449-161529 ( 41) TGCTCTCT 1 chrX:14292764-14292844 ( 3) TTCTCTTT 1 chrI:8901671-8901751 ( 45) TTCTCACT 1 chrI:2605362-2605442 ( 18) TTCTCACT 1 chrV:6469434-6469514 ( 50) TGCTCTTT 1 chrII:7001638-7001718 ( 70) TGCTCTTT 1 chrI:4224874-4224954 ( 11) TGCTCTTT 1 chrX:7478623-7478703 ( 59) TTTTCTCT 1 chrIII:6344916-6344996 ( 72) TTTTCTCT 1 chrIII:8022200-8022280 ( 59) TGCTCACT 1 chrI:10262306-10262386 ( 32) TACTCTCT 1 chrV:7231001-7231081 ( 69) TCCTCTCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKCTCTCT MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.6953 E= 2.1e-001 -1117 -1117 -1117 204 -249 -253 42 121 -1117 185 -1117 -149 -1117 -1117 -1117 204 -1117 199 -1117 -1117 -91 -1117 -1117 183 -1117 171 -1117 -49 -1117 -1117 -1117 204 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKCTCTCT MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 23 E= 2.1e-001 0.000000 0.000000 0.000000 1.000000 0.043478 0.043478 0.347826 0.565217 0.000000 0.913043 0.000000 0.086957 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.130435 0.000000 0.000000 0.869565 0.000000 0.826087 0.000000 0.173913 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKCTCTCT MEME-1 regular expression -------------------------------------------------------------------------------- T[TG]CTCTCT -------------------------------------------------------------------------------- Time 9.35 secs. ******************************************************************************** ******************************************************************************** MOTIF AGARARAG MEME-2 width = 8 sites = 67 llr = 478 E-value = 1.3e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif AGARARAG MEME-2 Description -------------------------------------------------------------------------------- Simplified A a2a58591 pos.-specific C :::::::1 probability G :7:525:7 matrix T ::::::11 bits 2.0 * * 1.8 * * 1.6 * * 1.4 * * * Relative 1.2 * * * * Entropy 1.0 ***** * (10.3 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AGAGAGAG consensus A AGA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGARARAG MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIII:7030615-7030695 52 6.14e-05 gagaagagag agagagag agatacgaga chrI:488353-488433 24 6.14e-05 TATTTCAGTG AGAGAGAG CATTGTGAGA chrI:1651380-1651460 32 6.14e-05 GCCACCCCAA agagagag agagggagag chrX:17030657-17030737 18 6.14e-05 aaacgagaga agagaaag gaaaaggaaa chrX:3116064-3116144 61 6.14e-05 TTGACCTTCG AGAAAAAG AAGAACGAAA chrI:1070020-1070100 69 6.14e-05 AGAAGAagag agagagag agag chrIV:16498207-16498287 49 6.14e-05 agagagagag agagagag GATTGCATTA chrIII:4542481-4542561 48 6.14e-05 CTCGAAGAGA AGAAAAAG AATAGAAAAA chrV:4499352-4499432 59 6.14e-05 AGGGAGAGTC AGAGAGAG GGAGCCCCGC chrX:17456954-17457034 32 6.14e-05 AAAGAGCGCT AGAAAGAG CAGTGCCCGT chrX:5140296-5140376 56 6.14e-05 TGCGAGAGGG AGAAAGAG TGGGCACATA chrI:5599560-5599640 7 6.14e-05 AAAGTG AGAGAGAG ACACAGTGAA chrIII:4358484-4358564 7 6.14e-05 AAACGA AGAGAGAG AATGGAGCAA chrI:2605362-2605442 71 6.14e-05 gaaACTGGCA AGAGAGAG AG chrIII:931566-931646 35 6.14e-05 gtgggaagcc agagagag taaaatatgg chrIII:96311-96391 8 6.14e-05 acggggg agagagag tgtgaaatgc chrII:4520361-4520441 53 6.14e-05 tgtggagatc agagagag tgttagagag chrI:7712577-7712657 37 1.19e-04 GGGGAGGAAG AAAAAAAG AAGACGTCGA chrI:13310328-13310408 7 1.19e-04 TTCAGC AAAAAGAG ATTGCCCCCA chrX:7236894-7236974 27 1.19e-04 TTGTGAAAAG AAAGAAAG TGGTAGCCGA chrX:12890237-12890317 37 1.19e-04 ACAAACAATG AAAAAGAG ATTTGGAGGC chrIV:16382389-16382469 29 1.19e-04 AACAACAACG AAAAAAAG AAGACTGATC chrV:11309158-11309238 66 1.19e-04 TCTGGATACA AAAAAGAG ATTAAGA chrIII:1824647-1824727 27 1.19e-04 TATCGCCTCA AAAAAAAG TCCGATGAAA chrIV:5526955-5527035 34 1.19e-04 GGGGTCCATC AAAAAGAG AATACCGCTC chrIV:2990597-2990677 4 1.84e-04 gag agagggag atagTGTCTG chrV:14697114-14697194 27 1.84e-04 ATGAAGGAAA AGAAGAAG ACAACATTAC chrI:5140235-5140315 14 1.84e-04 CATTTTCAAG AGAGGAAG AAGAGCTCTT chrX:8723994-8724074 35 1.84e-04 GGAAATAGAT AGAAGAAG TGAAAAGAGC chrIII:5931692-5931772 24 1.84e-04 CAGAAGGACC AGAGGGAG CCCTATCTGC chrX:11821337-11821417 3 1.84e-04 TC AGAGGAAG AGACGAAGAG chrX:4957326-4957406 21 1.84e-04 CCTGTGGaga agaagaag aagaaatgta chrIV:7098722-7098802 3 1.84e-04 gt agaggaag aagatgatga chrV:14153788-14153868 42 1.84e-04 TGAAGGGAGA AGAAGAAG CAGGATTTCC chrX:8386181-8386261 14 2.46e-04 ACTGGTGGTC AGAAAATG TGGCCTTGTG chrI:9474946-9475026 38 2.46e-04 GTTTAGAGTC AGAAAATG GTGTAACATT chrI:6175154-6175234 38 2.46e-04 AGAGAACATA AGAAAATG ATTTCTCTAT chrIII:5563913-5563993 52 2.46e-04 TGGAATGCCG AGAAAATG TGCGATTGAA chrII:161449-161529 8 2.46e-04 GATCTAA AGAAAATG CTCTCGGGAG chrV:11083895-11083975 50 2.46e-04 GAAATAGTGT AGAAAATG AAGAGACATT chrIII:4508534-4508614 67 3.03e-04 CCGTAGTCGC AGAGAAAT TCGGCG chrV:1821378-1821458 16 3.03e-04 CAAATTCGGT AGAAAAAT CGTAGAAAAA chrX:6040895-6040975 10 3.03e-04 ATGAGGAGC AGAGAAAT TCTGGCCAAG chrV:6204266-6204346 8 3.03e-04 CCAACGA AGAGAGAT CACTGGTGCC chrX:13781576-13781656 2 3.61e-04 A AGAGAAAA CGGTAGTTGC chrIII:6133578-6133658 73 3.61e-04 GAGAAGCATA AGAGAGAA chrX:7527955-7528035 21 3.61e-04 gcgtggggTG AGAGAAAA GTATGAAGAA chrIII:12351452-12351532 72 4.21e-04 CGTGTGGACG AGAGAAAC C chrII:14635363-14635443 59 4.21e-04 TCACCGGACG AGAGAAAC GGGTCACGAG chrIII:8684559-8684639 63 4.21e-04 ACGGGAACCC AGAGAGAC GCAGATATTA chrV:20793982-20794062 71 4.21e-04 TCAGACGGTC AGAAAGAC GG chrII:3521469-3521549 9 4.83e-04 CTTCTGCA AAAAGGAG TTGCCTGCGG chrIV:10403250-10403330 72 5.72e-04 GGGCGGAATG AGAGATAG A chrI:14721581-14721661 7 5.72e-04 AAGATG ACAAAAAG ACGAGTCTCC chrX:9300585-9300665 59 5.72e-04 GTCATACGCC ACAAAGAG GTGTAAACGG chrIII:11380671-11380751 68 5.72e-04 CAGACCCTCT AGAAATAG TACAG chrV:20711955-20712035 72 5.72e-04 ATAAAACAAC ACAGAGAG A chrV:18723621-18723701 54 6.30e-04 AAAAATCAAT AAAAAATG GTGAGGGCCC chrII:9060735-9060815 34 6.30e-04 AAGGATGAGA AAAGAGTG GAATTGGGAT chrIII:11236931-11237011 10 6.30e-04 aaataTGGA AAAAAGTG TGCGGCGGCA chrI:8530088-8530168 31 6.85e-04 AAAATTTATA AAAAAGAT CTTCCGTTGC chrX:3914402-3914482 43 7.49e-04 CCAGGTCTGT AGAGGATG TGCCGAAGAG chrX:12367630-12367710 2 8.65e-04 C AAAAAGAA ACTTCCCATG chrX:3900931-3901011 10 8.65e-04 TCGGCGGGA AGAGGGAT AAAGAAGAGA chrX:16525819-16525899 21 8.65e-04 TAATGCCGCT AGAGGAAT GTGCAACAGC chrV:265458-265538 17 9.22e-04 TTGCACATTG AAAAAAAC TTTTTTCGGG chrII:10545285-10545365 36 1.04e-03 GTGCAGGATA AGAAGGAA TTGAACCAAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGARARAG MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:7030615-7030695 6.1e-05 51_[+2]_21 chrI:488353-488433 6.1e-05 23_[+2]_49 chrI:1651380-1651460 6.1e-05 31_[+2]_41 chrX:17030657-17030737 6.1e-05 17_[+2]_55 chrX:3116064-3116144 6.1e-05 60_[+2]_12 chrI:1070020-1070100 6.1e-05 68_[+2]_4 chrIV:16498207-16498287 6.1e-05 48_[+2]_24 chrIII:4542481-4542561 6.1e-05 47_[+2]_25 chrV:4499352-4499432 6.1e-05 58_[+2]_14 chrX:17456954-17457034 6.1e-05 31_[+2]_41 chrX:5140296-5140376 6.1e-05 55_[+2]_17 chrI:5599560-5599640 6.1e-05 6_[+2]_66 chrIII:4358484-4358564 6.1e-05 6_[+2]_66 chrI:2605362-2605442 6.1e-05 70_[+2]_2 chrIII:931566-931646 6.1e-05 34_[+2]_38 chrIII:96311-96391 6.1e-05 7_[+2]_65 chrII:4520361-4520441 6.1e-05 52_[+2]_20 chrI:7712577-7712657 0.00012 36_[+2]_36 chrI:13310328-13310408 0.00012 6_[+2]_66 chrX:7236894-7236974 0.00012 26_[+2]_46 chrX:12890237-12890317 0.00012 36_[+2]_36 chrIV:16382389-16382469 0.00012 28_[+2]_44 chrV:11309158-11309238 0.00012 65_[+2]_7 chrIII:1824647-1824727 0.00012 26_[+2]_46 chrIV:5526955-5527035 0.00012 33_[+2]_39 chrIV:2990597-2990677 0.00018 3_[+2]_69 chrV:14697114-14697194 0.00018 26_[+2]_46 chrI:5140235-5140315 0.00018 13_[+2]_59 chrX:8723994-8724074 0.00018 34_[+2]_38 chrIII:5931692-5931772 0.00018 23_[+2]_49 chrX:11821337-11821417 0.00018 2_[+2]_70 chrX:4957326-4957406 0.00018 20_[+2]_52 chrIV:7098722-7098802 0.00018 2_[+2]_70 chrV:14153788-14153868 0.00018 41_[+2]_31 chrX:8386181-8386261 0.00025 13_[+2]_59 chrI:9474946-9475026 0.00025 37_[+2]_35 chrI:6175154-6175234 0.00025 37_[+2]_35 chrIII:5563913-5563993 0.00025 51_[+2]_21 chrII:161449-161529 0.00025 7_[+2]_65 chrV:11083895-11083975 0.00025 49_[+2]_23 chrIII:4508534-4508614 0.0003 66_[+2]_6 chrV:1821378-1821458 0.0003 15_[+2]_57 chrX:6040895-6040975 0.0003 9_[+2]_63 chrV:6204266-6204346 0.0003 7_[+2]_65 chrX:13781576-13781656 0.00036 1_[+2]_71 chrIII:6133578-6133658 0.00036 72_[+2] chrX:7527955-7528035 0.00036 20_[+2]_52 chrIII:12351452-12351532 0.00042 71_[+2]_1 chrII:14635363-14635443 0.00042 58_[+2]_14 chrIII:8684559-8684639 0.00042 62_[+2]_10 chrV:20793982-20794062 0.00042 70_[+2]_2 chrII:3521469-3521549 0.00048 8_[+2]_64 chrIV:10403250-10403330 0.00057 71_[+2]_1 chrI:14721581-14721661 0.00057 6_[+2]_66 chrX:9300585-9300665 0.00057 58_[+2]_14 chrIII:11380671-11380751 0.00057 67_[+2]_5 chrV:20711955-20712035 0.00057 71_[+2]_1 chrV:18723621-18723701 0.00063 53_[+2]_19 chrII:9060735-9060815 0.00063 33_[+2]_39 chrIII:11236931-11237011 0.00063 9_[+2]_63 chrI:8530088-8530168 0.00068 30_[+2]_42 chrX:3914402-3914482 0.00075 42_[+2]_30 chrX:12367630-12367710 0.00087 1_[+2]_71 chrX:3900931-3901011 0.00087 9_[+2]_63 chrX:16525819-16525899 0.00087 20_[+2]_52 chrV:265458-265538 0.00092 16_[+2]_56 chrII:10545285-10545365 0.001 35_[+2]_37 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGARARAG MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AGARARAG width=8 seqs=67 chrIII:7030615-7030695 ( 52) AGAGAGAG 1 chrI:488353-488433 ( 24) AGAGAGAG 1 chrI:1651380-1651460 ( 32) AGAGAGAG 1 chrX:17030657-17030737 ( 18) AGAGAAAG 1 chrX:3116064-3116144 ( 61) AGAAAAAG 1 chrI:1070020-1070100 ( 69) AGAGAGAG 1 chrIV:16498207-16498287 ( 49) AGAGAGAG 1 chrIII:4542481-4542561 ( 48) AGAAAAAG 1 chrV:4499352-4499432 ( 59) AGAGAGAG 1 chrX:17456954-17457034 ( 32) AGAAAGAG 1 chrX:5140296-5140376 ( 56) AGAAAGAG 1 chrI:5599560-5599640 ( 7) AGAGAGAG 1 chrIII:4358484-4358564 ( 7) AGAGAGAG 1 chrI:2605362-2605442 ( 71) AGAGAGAG 1 chrIII:931566-931646 ( 35) AGAGAGAG 1 chrIII:96311-96391 ( 8) AGAGAGAG 1 chrII:4520361-4520441 ( 53) AGAGAGAG 1 chrI:7712577-7712657 ( 37) AAAAAAAG 1 chrI:13310328-13310408 ( 7) AAAAAGAG 1 chrX:7236894-7236974 ( 27) AAAGAAAG 1 chrX:12890237-12890317 ( 37) AAAAAGAG 1 chrIV:16382389-16382469 ( 29) AAAAAAAG 1 chrV:11309158-11309238 ( 66) AAAAAGAG 1 chrIII:1824647-1824727 ( 27) AAAAAAAG 1 chrIV:5526955-5527035 ( 34) AAAAAGAG 1 chrIV:2990597-2990677 ( 4) AGAGGGAG 1 chrV:14697114-14697194 ( 27) AGAAGAAG 1 chrI:5140235-5140315 ( 14) AGAGGAAG 1 chrX:8723994-8724074 ( 35) AGAAGAAG 1 chrIII:5931692-5931772 ( 24) AGAGGGAG 1 chrX:11821337-11821417 ( 3) AGAGGAAG 1 chrX:4957326-4957406 ( 21) AGAAGAAG 1 chrIV:7098722-7098802 ( 3) AGAGGAAG 1 chrV:14153788-14153868 ( 42) AGAAGAAG 1 chrX:8386181-8386261 ( 14) AGAAAATG 1 chrI:9474946-9475026 ( 38) AGAAAATG 1 chrI:6175154-6175234 ( 38) AGAAAATG 1 chrIII:5563913-5563993 ( 52) AGAAAATG 1 chrII:161449-161529 ( 8) AGAAAATG 1 chrV:11083895-11083975 ( 50) AGAAAATG 1 chrIII:4508534-4508614 ( 67) AGAGAAAT 1 chrV:1821378-1821458 ( 16) AGAAAAAT 1 chrX:6040895-6040975 ( 10) AGAGAAAT 1 chrV:6204266-6204346 ( 8) AGAGAGAT 1 chrX:13781576-13781656 ( 2) AGAGAAAA 1 chrIII:6133578-6133658 ( 73) AGAGAGAA 1 chrX:7527955-7528035 ( 21) AGAGAAAA 1 chrIII:12351452-12351532 ( 72) AGAGAAAC 1 chrII:14635363-14635443 ( 59) AGAGAAAC 1 chrIII:8684559-8684639 ( 63) AGAGAGAC 1 chrV:20793982-20794062 ( 71) AGAAAGAC 1 chrII:3521469-3521549 ( 9) AAAAGGAG 1 chrIV:10403250-10403330 ( 72) AGAGATAG 1 chrI:14721581-14721661 ( 7) ACAAAAAG 1 chrX:9300585-9300665 ( 59) ACAAAGAG 1 chrIII:11380671-11380751 ( 68) AGAAATAG 1 chrV:20711955-20712035 ( 72) ACAGAGAG 1 chrV:18723621-18723701 ( 54) AAAAAATG 1 chrII:9060735-9060815 ( 34) AAAGAGTG 1 chrIII:11236931-11237011 ( 10) AAAAAGTG 1 chrI:8530088-8530168 ( 31) AAAAAGAT 1 chrX:3914402-3914482 ( 43) AGAGGATG 1 chrX:12367630-12367710 ( 2) AAAAAGAA 1 chrX:3900931-3901011 ( 10) AGAGGGAT 1 chrX:16525819-16525899 ( 21) AGAGGAAT 1 chrV:265458-265538 ( 17) AAAAAAAC 1 chrII:10545285-10545365 ( 36) AGAAGGAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGARARAG MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.44204 E= 1.3e+000 203 -1271 -1271 -1271 -13 -249 150 -1271 203 -1271 -1271 -1271 101 -1271 97 -1271 169 -1271 -31 -1271 97 -1271 93 -303 180 -1271 -1271 -71 -171 -176 152 -122 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGARARAG MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 67 E= 1.3e+000 1.000000 0.000000 0.000000 0.000000 0.223881 0.044776 0.731343 0.000000 1.000000 0.000000 0.000000 0.000000 0.492537 0.000000 0.507463 0.000000 0.791045 0.000000 0.208955 0.000000 0.477612 0.000000 0.492537 0.029851 0.850746 0.000000 0.000000 0.149254 0.074627 0.074627 0.746269 0.104478 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGARARAG MEME-2 regular expression -------------------------------------------------------------------------------- A[GA]A[GA][AG][GA]AG -------------------------------------------------------------------------------- Time 14.72 secs. ******************************************************************************** ******************************************************************************** MOTIF TCTYCTTC MEME-3 width = 8 sites = 20 llr = 183 E-value = 6.0e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif TCTYCTTC MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C :9:4a::a probability G 2::::3:: matrix T 91a6:8a: bits 2.0 * * ** 1.8 * * ** 1.6 * * ** 1.4 *** * ** Relative 1.2 *** **** Entropy 1.0 ******** (13.2 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TCTTCTTC consensus C G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTYCTTC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrV:4491467-4491547 4 1.38e-05 GCT TCTTCTTC TCCCCGACTC chrI:10262306-10262386 50 1.38e-05 AACTTCTTCA TCTTCTTC CCGCTGGGTT chrX:13532773-13532853 11 1.38e-05 ttcttcttct tcttcttc tCCCCTATCT chrI:1720674-1720754 43 1.38e-05 CGATCATCTt tcttcttc ttcttcatct chrX:14292764-14292844 22 1.38e-05 tactactacc tcttcttc ttattcttct chrV:1471315-1471395 4 1.38e-05 GCA TCTTCTTC TCTTAATGTG chrI:2605362-2605442 1 1.38e-05 . tcttcttc tttttcttct chrIV:11605063-11605143 19 2.81e-05 GTGGGCGGAG TCTCCTTC CCCTTTTGCA chrI:9374768-9374848 44 2.81e-05 CCATCTCTCT TCTCCTTC ACAAACGCCC chrIII:4094802-4094882 50 2.81e-05 GCTCCTGCGT TCTCCTTC TCGACATTCT chrI:6175154-6175234 59 4.28e-05 TCTCTATGCC TCTTCGTC GTGTGGGAGG chrII:13986223-13986303 6 4.28e-05 CTATT TCTTCGTC TGTCAATCTA chrV:11641448-11641528 33 5.80e-05 CTACAAAATC TCTCCGTC TCTTTCACAG chrIV:11857315-11857395 49 5.80e-05 ttcatctctt tctccgtc actttcGCAA chrIII:7659567-7659647 58 5.80e-05 ACACTGACAC TCTCCGTC TAACCATTTC chrIII:6138658-6138738 15 7.27e-05 ACCTGTCTCC GCTTCTTC CCGAGACTTC chrX:16392353-16392433 3 7.27e-05 GT GCTTCTTC TCGGCGAGAT chrIII:5563913-5563993 12 8.61e-05 TGCCTGTGCT TTTTCTTC CCGTCGGCTG chrX:16602522-16602602 66 1.01e-04 TCCACGAGCT GCTCCTTC GCCTGTC chrI:9855531-9855611 16 1.15e-04 GTCTGATGGC TTTCCTTC TTTCGTTTCC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTYCTTC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:4491467-4491547 1.4e-05 3_[+3]_69 chrI:10262306-10262386 1.4e-05 49_[+3]_23 chrX:13532773-13532853 1.4e-05 10_[+3]_62 chrI:1720674-1720754 1.4e-05 42_[+3]_30 chrX:14292764-14292844 1.4e-05 21_[+3]_51 chrV:1471315-1471395 1.4e-05 3_[+3]_69 chrI:2605362-2605442 1.4e-05 [+3]_72 chrIV:11605063-11605143 2.8e-05 18_[+3]_54 chrI:9374768-9374848 2.8e-05 43_[+3]_29 chrIII:4094802-4094882 2.8e-05 49_[+3]_23 chrI:6175154-6175234 4.3e-05 58_[+3]_14 chrII:13986223-13986303 4.3e-05 5_[+3]_67 chrV:11641448-11641528 5.8e-05 32_[+3]_40 chrIV:11857315-11857395 5.8e-05 48_[+3]_24 chrIII:7659567-7659647 5.8e-05 57_[+3]_15 chrIII:6138658-6138738 7.3e-05 14_[+3]_58 chrX:16392353-16392433 7.3e-05 2_[+3]_70 chrIII:5563913-5563993 8.6e-05 11_[+3]_61 chrX:16602522-16602602 0.0001 65_[+3]_7 chrI:9855531-9855611 0.00012 15_[+3]_57 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTYCTTC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TCTYCTTC width=8 seqs=20 chrV:4491467-4491547 ( 4) TCTTCTTC 1 chrI:10262306-10262386 ( 50) TCTTCTTC 1 chrX:13532773-13532853 ( 11) TCTTCTTC 1 chrI:1720674-1720754 ( 43) TCTTCTTC 1 chrX:14292764-14292844 ( 22) TCTTCTTC 1 chrV:1471315-1471395 ( 4) TCTTCTTC 1 chrI:2605362-2605442 ( 1) TCTTCTTC 1 chrIV:11605063-11605143 ( 19) TCTCCTTC 1 chrI:9374768-9374848 ( 44) TCTCCTTC 1 chrIII:4094802-4094882 ( 50) TCTCCTTC 1 chrI:6175154-6175234 ( 59) TCTTCGTC 1 chrII:13986223-13986303 ( 6) TCTTCGTC 1 chrV:11641448-11641528 ( 33) TCTCCGTC 1 chrIV:11857315-11857395 ( 49) TCTCCGTC 1 chrIII:7659567-7659647 ( 58) TCTCCGTC 1 chrIII:6138658-6138738 ( 15) GCTTCTTC 1 chrX:16392353-16392433 ( 3) GCTTCTTC 1 chrIII:5563913-5563993 ( 12) TTTTCTTC 1 chrX:16602522-16602602 ( 66) GCTCCTTC 1 chrI:9855531-9855611 ( 16) TTTCCTTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTYCTTC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.307 E= 6.0e+001 -1097 -1097 -79 180 -1097 183 -1097 -128 -1097 -1097 -1097 204 -1097 66 -1097 130 -1097 199 -1097 -1097 -1097 -1097 -5 162 -1097 -1097 -1097 204 -1097 199 -1097 -1097 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTYCTTC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 20 E= 6.0e+001 0.000000 0.000000 0.150000 0.850000 0.000000 0.900000 0.000000 0.100000 0.000000 0.000000 0.000000 1.000000 0.000000 0.400000 0.000000 0.600000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.250000 0.750000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTYCTTC MEME-3 regular expression -------------------------------------------------------------------------------- TCT[TC]C[TG]TC -------------------------------------------------------------------------------- Time 18.37 secs. ******************************************************************************** ******************************************************************************** MOTIF AATCGAAC MEME-4 width = 8 sites = 13 llr = 130 E-value = 1.4e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif AATCGAAC MEME-4 Description -------------------------------------------------------------------------------- Simplified A 89:::aa: pos.-specific C :1:8:::a probability G 2:::a::: matrix T ::a2:::: bits 2.0 * **** 1.8 * **** 1.6 ** **** 1.4 ******** Relative 1.2 ******** Entropy 1.0 ******** (14.4 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AATCGAAC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AATCGAAC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrII:3521469-3521549 31 1.45e-05 CTGCGGCTGG AATCGAAC CAGCGTCGCC chrI:8530088-8530168 53 1.45e-05 CGTTGCGGGG AATCGAAC CCCGGCCTTA chrIII:8650371-8650451 23 1.45e-05 CCGAACCGGG AATCGAAC CCGGGACCTC chrII:4942477-4942557 47 1.45e-05 GTGCATTGAG AATCGAAC TGGTGGACAG chrIV:3227609-3227689 44 1.45e-05 GCTGCGATAA AATCGAAC GAATGCGAtg chrX:12367630-12367710 25 1.45e-05 CCATGCCGGG AATCGAAC CCGGGCCGCG chrX:16928237-16928317 47 1.45e-05 atcgaccggg aatcgaac ccgggccgcc chrV:15505216-15505296 5 1.45e-05 cggg aatcgaac ccgggccgcc chrX:16604714-16604794 19 2.85e-05 CCCGGCCGGG AATTGAAC CCGGGTCTCG chrX:12890237-12890317 61 2.85e-05 AGGCACGGGG AATTGAAC CCCGGACTTC chrX:8944197-8944277 48 4.37e-05 CCACTGAGCG GATCGAAC GCCCAACCTT chrV:6469434-6469514 70 4.37e-05 CAACAGGGCC GATCGAAC CAC chrV:16622017-16622097 55 5.86e-05 CACCTAGGGG ACTCGAAC CCCTGACCTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AATCGAAC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:3521469-3521549 1.4e-05 30_[+4]_42 chrI:8530088-8530168 1.4e-05 52_[+4]_20 chrIII:8650371-8650451 1.4e-05 22_[+4]_50 chrII:4942477-4942557 1.4e-05 46_[+4]_26 chrIV:3227609-3227689 1.4e-05 43_[+4]_29 chrX:12367630-12367710 1.4e-05 24_[+4]_48 chrX:16928237-16928317 1.4e-05 46_[+4]_26 chrV:15505216-15505296 1.4e-05 4_[+4]_68 chrX:16604714-16604794 2.8e-05 18_[+4]_54 chrX:12890237-12890317 2.8e-05 60_[+4]_12 chrX:8944197-8944277 4.4e-05 47_[+4]_25 chrV:6469434-6469514 4.4e-05 69_[+4]_3 chrV:16622017-16622097 5.9e-05 54_[+4]_18 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AATCGAAC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AATCGAAC width=8 seqs=13 chrII:3521469-3521549 ( 31) AATCGAAC 1 chrI:8530088-8530168 ( 53) AATCGAAC 1 chrIII:8650371-8650451 ( 23) AATCGAAC 1 chrII:4942477-4942557 ( 47) AATCGAAC 1 chrIV:3227609-3227689 ( 44) AATCGAAC 1 chrX:12367630-12367710 ( 25) AATCGAAC 1 chrX:16928237-16928317 ( 47) AATCGAAC 1 chrV:15505216-15505296 ( 5) AATCGAAC 1 chrX:16604714-16604794 ( 19) AATTGAAC 1 chrX:12890237-12890317 ( 61) AATTGAAC 1 chrX:8944197-8944277 ( 48) GATCGAAC 1 chrV:6469434-6469514 ( 70) GATCGAAC 1 chrV:16622017-16622097 ( 55) ACTCGAAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AATCGAAC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.985 E= 1.4e+002 179 -1035 -75 -1035 192 -171 -1035 -1035 -1035 -1035 -1035 204 -1035 174 -1035 -66 -1035 -1035 195 -1035 203 -1035 -1035 -1035 203 -1035 -1035 -1035 -1035 199 -1035 -1035 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AATCGAAC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 13 E= 1.4e+002 0.846154 0.000000 0.153846 0.000000 0.923077 0.076923 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.846154 0.000000 0.153846 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AATCGAAC MEME-4 regular expression -------------------------------------------------------------------------------- AATCGAAC -------------------------------------------------------------------------------- Time 21.91 secs. ******************************************************************************** ******************************************************************************** MOTIF MCRCACAC MEME-5 width = 8 sites = 29 llr = 242 E-value = 2.0e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif MCRCACAC MEME-5 Description -------------------------------------------------------------------------------- Simplified A 6:4:7:a: pos.-specific C 4a:a38:a probability G ::5::2:: matrix T ::1::::: bits 2.0 * * ** 1.8 * * ** 1.6 * * ** 1.4 * * ** Relative 1.2 * ***** Entropy 1.0 ** ***** (12.1 bits) 0.8 ** ***** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel ACGCACAC consensus C A C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MCRCACAC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:2885471-2885551 42 1.54e-05 CACCACACAT ACGCACAC ACTGGCCGAA chrX:15275441-15275521 66 2.99e-05 tcacacacac acacacac acacaca chrX:17030657-17030737 70 2.99e-05 acacacacac acacacac aca chrX:14804818-14804898 11 2.99e-05 CACCCCTACC ACACACAC GACAAACATG chrX:17633274-17633354 52 2.99e-05 GAGACCGCCA ACACACAC GTGCACTATT chrII:9060735-9060815 11 2.99e-05 GCGTCCACTA ACACACAC TATCGAAGGA chrX:15668370-15668450 31 2.99e-05 acacacacac acacacac acacacacac chrV:13869010-13869090 55 2.99e-05 acacacacac acacacac acacacacac chrI:14806576-14806656 27 2.99e-05 CTTTacacac acacacac acacacacac chrIV:11605063-11605143 43 4.57e-05 TGCAAGTGTG CCGCACAC AGTTTGTTCA chrV:14524362-14524442 56 4.57e-05 TGCAAACACG CCGCACAC ACTTACGACG chrIV:16863674-16863754 11 4.57e-05 CGCAATAGCG CCGCACAC TTTTTTGTTG chrX:9296741-9296821 63 4.57e-05 TGCCACTATG CCGCACAC AACTGGGTGA chrIII:12399860-12399940 4 4.57e-05 ttg ccgCACAC CCCTGTTTTA chrIII:3471583-3471663 38 6.06e-05 CCATCTCACC CCACACAC GTCCATTCCG chrII:5399353-5399433 64 7.64e-05 ATGAAAGACC ACGCCCAC TATTTTAGA chrV:10681344-10681424 60 1.06e-04 CCACTCGTAC ACTCACAC ATAGGGACAG chrIII:5931692-5931772 54 1.06e-04 TTCCTCCACC ACTCACAC TGTCTCGTTC chrIII:11236931-11237011 43 1.22e-04 TGCCTCCGCC CCGCCCAC ATTTCCGCGC chrV:4499352-4499432 73 1.22e-04 AGAGGGAGCC CCGCCCAC chrV:1821378-1821458 62 1.22e-04 ATACCCGACT CCGCCCAC ATGCAAGGCG chrIV:1981112-1981192 44 1.22e-04 GTGCGGCTCC CCGCCCAC TTTTCCGTGC chrI:488353-488433 48 1.68e-04 GAGAAGAGAA ACGCAGAC GAGGCTGGCG chrI:1651380-1651460 50 1.68e-04 agagggagag aCGCAGAC ACAAAGGAGG chrIII:13721341-13721421 59 1.68e-04 AGTTGGAGAG ACGCAGAC AGCTTCTCGC chrIII:8684559-8684639 1 1.83e-04 . ACACAGAC AACTCGCCCG chrX:14115662-14115742 15 2.45e-04 CAAACGACCT CCTCCCAC TTTCGTGGCC chrI:7383286-7383366 57 2.45e-04 ACTGAGCCAC CCTCCCAC TCTACGCTGC chrIV:16382389-16382469 62 3.39e-04 CGGGCTCGAA CCACCGAC CTTCTGTGTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MCRCACAC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:2885471-2885551 1.5e-05 41_[+5]_31 chrX:15275441-15275521 3e-05 65_[+5]_7 chrX:17030657-17030737 3e-05 69_[+5]_3 chrX:14804818-14804898 3e-05 10_[+5]_62 chrX:17633274-17633354 3e-05 51_[+5]_21 chrII:9060735-9060815 3e-05 10_[+5]_62 chrX:15668370-15668450 3e-05 30_[+5]_42 chrV:13869010-13869090 3e-05 54_[+5]_18 chrI:14806576-14806656 3e-05 26_[+5]_46 chrIV:11605063-11605143 4.6e-05 42_[+5]_30 chrV:14524362-14524442 4.6e-05 55_[+5]_17 chrIV:16863674-16863754 4.6e-05 10_[+5]_62 chrX:9296741-9296821 4.6e-05 62_[+5]_10 chrIII:12399860-12399940 4.6e-05 3_[+5]_69 chrIII:3471583-3471663 6.1e-05 37_[+5]_35 chrII:5399353-5399433 7.6e-05 63_[+5]_9 chrV:10681344-10681424 0.00011 59_[+5]_13 chrIII:5931692-5931772 0.00011 53_[+5]_19 chrIII:11236931-11237011 0.00012 42_[+5]_30 chrV:4499352-4499432 0.00012 72_[+5] chrV:1821378-1821458 0.00012 61_[+5]_11 chrIV:1981112-1981192 0.00012 43_[+5]_29 chrI:488353-488433 0.00017 47_[+5]_25 chrI:1651380-1651460 0.00017 49_[+5]_23 chrIII:13721341-13721421 0.00017 58_[+5]_14 chrIII:8684559-8684639 0.00018 [+5]_72 chrX:14115662-14115742 0.00024 14_[+5]_58 chrI:7383286-7383366 0.00024 56_[+5]_16 chrIV:16382389-16382469 0.00034 61_[+5]_11 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MCRCACAC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF MCRCACAC width=8 seqs=29 chrX:2885471-2885551 ( 42) ACGCACAC 1 chrX:15275441-15275521 ( 66) ACACACAC 1 chrX:17030657-17030737 ( 70) ACACACAC 1 chrX:14804818-14804898 ( 11) ACACACAC 1 chrX:17633274-17633354 ( 52) ACACACAC 1 chrII:9060735-9060815 ( 11) ACACACAC 1 chrX:15668370-15668450 ( 31) ACACACAC 1 chrV:13869010-13869090 ( 55) ACACACAC 1 chrI:14806576-14806656 ( 27) ACACACAC 1 chrIV:11605063-11605143 ( 43) CCGCACAC 1 chrV:14524362-14524442 ( 56) CCGCACAC 1 chrIV:16863674-16863754 ( 11) CCGCACAC 1 chrX:9296741-9296821 ( 63) CCGCACAC 1 chrIII:12399860-12399940 ( 4) CCGCACAC 1 chrIII:3471583-3471663 ( 38) CCACACAC 1 chrII:5399353-5399433 ( 64) ACGCCCAC 1 chrV:10681344-10681424 ( 60) ACTCACAC 1 chrIII:5931692-5931772 ( 54) ACTCACAC 1 chrIII:11236931-11237011 ( 43) CCGCCCAC 1 chrV:4499352-4499432 ( 73) CCGCCCAC 1 chrV:1821378-1821458 ( 62) CCGCCCAC 1 chrIV:1981112-1981192 ( 44) CCGCCCAC 1 chrI:488353-488433 ( 48) ACGCAGAC 1 chrI:1651380-1651460 ( 50) ACGCAGAC 1 chrIII:13721341-13721421 ( 59) ACGCAGAC 1 chrIII:8684559-8684639 ( 1) ACACAGAC 1 chrX:14115662-14115742 ( 15) CCTCCCAC 1 chrI:7383286-7383366 ( 57) CCTCCCAC 1 chrIV:16382389-16382469 ( 62) CCACCGAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MCRCACAC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.5458 E= 2.0e+003 117 83 -1150 -1150 -1150 199 -1150 -1150 63 -1150 90 -82 -1150 199 -1150 -1150 157 13 -1150 -1150 -1150 171 -59 -1150 203 -1150 -1150 -1150 -1150 199 -1150 -1150 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MCRCACAC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 29 E= 2.0e+003 0.551724 0.448276 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.379310 0.000000 0.482759 0.137931 0.000000 1.000000 0.000000 0.000000 0.724138 0.275862 0.000000 0.000000 0.000000 0.827586 0.172414 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MCRCACAC MEME-5 regular expression -------------------------------------------------------------------------------- [AC]C[GA]C[AC]CAC -------------------------------------------------------------------------------- Time 25.43 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:10590637-10590717 8.75e-01 80 chrV:6204266-6204346 2.66e-01 80 chrIV:1108202-1108282 3.91e-01 80 chrV:14153788-14153868 1.61e-02 80 chrX:11035709-11035789 3.74e-02 80 chrIV:7098722-7098802 4.59e-01 80 chrX:11379494-11379574 3.99e-01 80 chrX:8053118-8053198 9.93e-03 44_[+1(1.38e-05)]_28 chrI:5020154-5020234 2.81e-01 80 chrX:17459063-17459143 7.63e-01 80 chrI:7383286-7383366 1.89e-01 80 chrX:16525819-16525899 4.32e-01 80 chrI:14806576-14806656 8.31e-02 20_[+5(2.99e-05)]_[+5(2.99e-05)]_6_\ [+5(1.54e-05)]_30 chrI:14628107-14628187 3.69e-01 80 chrV:11083895-11083975 4.78e-01 80 chrII:161449-161529 6.41e-03 40_[+1(2.85e-05)]_32 chrII:13986223-13986303 2.40e-01 5_[+3(4.28e-05)]_31_[+3(4.28e-05)]_\ 28 chrX:5056378-5056458 1.78e-01 80 chrII:4520361-4520441 2.98e-01 30_[+2(6.14e-05)]_14_[+2(6.14e-05)]_\ 20 chrI:933476-933556 3.57e-02 35_[+1(1.38e-05)]_37 chrV:265458-265538 2.49e-01 80 chrIII:96311-96391 1.38e-01 7_[+2(6.14e-05)]_65 chrV:13393498-13393578 8.62e-01 80 chrX:16392353-16392433 6.27e-02 2_[+3(7.27e-05)]_70 chrV:13869010-13869090 2.67e-01 [+5(2.99e-05)]_[+5(2.99e-05)]_\ [+5(2.99e-05)]_[+5(2.99e-05)]_[+5(2.99e-05)]_[+5(2.99e-05)]_[+5(2.99e-05)]_\ [+5(2.99e-05)]_[+5(2.99e-05)]_[+5(2.99e-05)] chrI:6882063-6882143 1.11e-01 80 chrIII:11942855-11942935 8.55e-01 80 chrIII:5564946-5565026 5.70e-01 80 chrX:3900931-3901011 4.38e-01 80 chrII:12269056-12269136 8.60e-01 80 chrX:4957326-4957406 5.30e-01 80 chrIII:13224562-13224642 7.96e-01 80 chrI:1100766-1100846 3.49e-01 80 chrIV:5526955-5527035 1.70e-01 80 chrII:13056629-13056709 2.17e-01 80 chrIII:931566-931646 1.93e-01 34_[+2(6.14e-05)]_38 chrI:2605362-2605442 7.86e-05 [+3(1.38e-05)]_1_[+3(8.61e-05)]_\ [+1(5.58e-05)]_45_[+2(6.14e-05)]_2 chrX:10394347-10394427 6.84e-01 80 chrI:11664928-11665008 3.71e-01 80 chrIV:1981112-1981192 5.90e-02 80 chrII:14019683-14019763 1.00e+00 80 chrX:6040895-6040975 6.14e-01 80 chrIV:11071028-11071108 1.00e+00 80 chrX:11821337-11821417 1.07e-01 80 chrV:20793982-20794062 2.60e-01 80 chrIII:5931692-5931772 3.21e-03 80 chrIII:1824647-1824727 1.46e-01 80 chrIII:4358484-4358564 8.46e-04 6_[+2(6.14e-05)]_18_[+1(2.85e-05)]_\ 40 chrX:6410473-6410553 8.59e-03 53_[+1(1.38e-05)]_19 chrI:5599560-5599640 7.27e-02 6_[+2(6.14e-05)]_66 chrI:12225446-12225526 5.96e-01 80 chrV:6930533-6930613 3.90e-02 50_[+1(2.85e-05)]_22 chrIV:5371064-5371144 8.14e-01 80 chrII:2995147-2995227 6.14e-01 80 chrIII:13779521-13779601 6.98e-01 80 chrX:5140296-5140376 7.59e-02 55_[+2(6.14e-05)]_17 chrX:8723994-8724074 4.70e-02 80 chrX:8602852-8602932 9.94e-01 80 chrIII:4094802-4094882 4.58e-02 49_[+3(2.81e-05)]_23 chrX:3914402-3914482 3.72e-02 80 chrIII:9640193-9640273 9.88e-01 80 chrIII:8684559-8684639 4.22e-02 80 chrV:1821378-1821458 2.35e-02 80 chrX:2322018-2322098 4.19e-01 80 chrI:1575721-1575801 7.75e-01 80 chrI:4224874-4224954 3.00e-02 10_[+1(7.01e-05)]_62 chrIII:3499993-3500073 3.94e-01 80 chrV:7231001-7231081 4.93e-02 80 chrIII:10432266-10432346 4.47e-01 80 chrV:18720281-18720361 7.20e-01 80 chrX:14229607-14229687 9.99e-01 80 chrIV:1358171-1358251 9.51e-01 80 chrV:14689501-14689581 7.68e-01 80 chrV:20711955-20712035 5.93e-02 80 chrIII:6138658-6138738 1.20e-01 14_[+3(7.27e-05)]_58 chrX:7153542-7153622 1.59e-01 80 chrI:2985174-2985254 4.72e-03 65_[+1(1.38e-05)]_7 chrX:5354675-5354755 7.70e-01 80 chrV:12510128-12510208 1.00e+00 80 chrIII:5563913-5563993 2.41e-03 11_[+3(8.61e-05)]_61 chrI:2299596-2299676 4.85e-02 45_[+1(1.38e-05)]_27 chrIII:13293188-13293268 6.58e-01 80 chrI:14368137-14368217 4.30e-01 80 chrI:14862209-14862289 2.05e-03 22_[+1(1.38e-05)]_50 chrX:16389462-16389542 3.91e-01 80 chrIII:12399860-12399940 3.03e-02 3_[+5(4.57e-05)]_69 chrV:1471315-1471395 1.38e-02 3_[+3(1.38e-05)]_69 chrX:10524635-10524715 9.59e-01 80 chrIV:9316202-9316282 3.65e-01 80 chrV:15505216-15505296 5.20e-02 4_[+4(1.45e-05)]_68 chrX:14292764-14292844 4.30e-03 2_[+1(4.19e-05)]_11_[+3(1.38e-05)]_\ 4_[+3(1.38e-05)]_39 chrX:8156099-8156179 2.12e-01 80 chrX:3348023-3348103 4.65e-01 80 chrI:1720674-1720754 2.01e-03 42_[+3(1.38e-05)]_30 chrV:13176501-13176581 9.26e-01 80 chrIII:3664392-3664472 9.23e-01 80 chrIII:13721341-13721421 2.11e-01 80 chrI:11609214-11609294 7.63e-01 80 chrIII:11380671-11380751 1.56e-01 80 chrII:7001638-7001718 3.21e-02 69_[+1(7.01e-05)]_3 chrX:17456954-17457034 2.88e-03 31_[+2(6.14e-05)]_29_[+1(2.85e-05)]_\ 4 chrX:9296741-9296821 1.40e-01 62_[+5(4.57e-05)]_10 chrV:11309158-11309238 6.81e-02 80 chrIV:13695872-13695952 3.00e-01 80 chrI:1175826-1175906 4.14e-01 80 chrI:767282-767362 6.96e-01 80 chrV:16622017-16622097 2.78e-02 54_[+4(5.86e-05)]_18 chrX:11576964-11577044 9.28e-01 80 chrX:7527955-7528035 1.84e-01 80 chrV:6709189-6709269 9.03e-01 80 chrIII:8022200-8022280 2.63e-02 58_[+1(9.82e-05)]_14 chrV:4499352-4499432 1.75e-05 8_[+1(1.38e-05)]_42_[+2(6.14e-05)]_\ 14 chrIII:6133578-6133658 6.91e-01 80 chrX:14684521-14684601 2.89e-01 80 chrI:6136562-6136642 7.49e-01 80 chrI:9268888-9268968 3.18e-01 80 chrII:11694639-11694719 9.37e-01 80 chrI:8901671-8901751 1.22e-01 44_[+1(5.58e-05)]_28 chrIII:6344916-6344996 7.19e-03 71_[+1(9.82e-05)]_1 chrIV:16398320-16398400 7.61e-01 80 chrIII:3471583-3471663 4.64e-02 37_[+5(6.06e-05)]_35 chrI:6175154-6175234 2.82e-03 58_[+3(4.28e-05)]_14 chrV:12233608-12233688 8.38e-01 80 chrV:6469434-6469514 1.66e-03 49_[+1(7.01e-05)]_12_[+4(4.37e-05)]_\ 3 chrX:9300585-9300665 3.08e-01 80 chrX:16150249-16150329 9.94e-01 80 chrI:9474946-9475026 5.76e-01 80 chrX:16928237-16928317 1.38e-02 46_[+4(1.45e-05)]_26 chrIII:4542481-4542561 1.39e-01 47_[+2(6.14e-05)]_25 chrI:3873916-3873996 4.38e-01 80 chrIII:235315-235395 7.88e-01 80 chrX:12367630-12367710 2.83e-02 24_[+4(1.45e-05)]_48 chrII:4130445-4130525 7.32e-01 80 chrV:4964485-4964565 5.39e-01 80 chrII:5399353-5399433 6.92e-02 63_[+5(7.64e-05)]_9 chrI:4974752-4974832 2.40e-01 80 chrII:10545285-10545365 2.47e-02 41_[+4(2.85e-05)]_31 chrX:15668370-15668450 2.01e-01 [+5(2.99e-05)]_[+5(2.99e-05)]_\ [+5(2.99e-05)]_[+5(2.99e-05)]_[+5(2.99e-05)]_[+5(2.99e-05)]_32 chrIII:445606-445686 9.57e-01 80 chrV:16598646-16598726 9.25e-01 80 chrII:7708727-7708807 5.09e-01 80 chrIII:4426778-4426858 4.39e-01 80 chrIV:8334215-8334295 1.02e-01 80 chrX:13532773-13532853 6.22e-02 1_[+3(1.38e-05)]_1_[+3(1.38e-05)]_\ 62 chrIV:16498207-16498287 9.80e-02 34_[+2(6.14e-05)]_[+2(6.14e-05)]_30 chrIII:3916773-3916853 5.56e-01 80 chrI:1070020-1070100 2.71e-01 64_[+2(6.14e-05)]_[+2(6.14e-05)] chrIII:11236931-11237011 5.73e-02 80 chrIV:16382389-16382469 1.16e-03 80 chrV:20713062-20713142 2.34e-02 5_[+1(1.38e-05)]_67 chrX:3689455-3689535 7.86e-01 80 chrIV:16863674-16863754 3.90e-02 10_[+5(4.57e-05)]_62 chrX:14115662-14115742 2.19e-01 80 chrII:7640306-7640386 9.84e-01 80 chrIII:3175153-3175233 9.95e-01 80 chrV:6880756-6880836 9.90e-01 80 chrII:11959385-11959465 6.76e-01 80 chrX:16602522-16602602 3.01e-02 80 chrI:10262306-10262386 4.65e-04 49_[+3(1.38e-05)]_23 chrX:2885471-2885551 4.43e-02 41_[+5(1.54e-05)]_31 chrII:3567805-3567885 6.32e-01 80 chrIII:9104215-9104295 1.46e-01 80 chrI:5140235-5140315 1.89e-02 80 chrII:14635363-14635443 3.18e-01 80 chrX:12890237-12890317 3.26e-03 60_[+4(2.85e-05)]_12 chrII:6492003-6492083 6.85e-01 80 chrIII:11935992-11936072 1.95e-01 80 chrIV:9107675-9107755 4.01e-01 80 chrII:9060735-9060815 3.13e-03 10_[+5(2.99e-05)]_62 chrX:5407440-5407520 8.45e-01 80 chrV:15554002-15554082 9.91e-01 80 chrX:17633274-17633354 1.75e-02 51_[+5(2.99e-05)]_21 chrX:3116064-3116144 4.95e-02 60_[+2(6.14e-05)]_12 chrIV:5038964-5039044 6.15e-01 80 chrX:12843641-12843721 6.73e-01 80 chrV:3587801-3587881 4.44e-01 80 chrV:11239372-11239452 7.49e-01 80 chrIV:3227609-3227689 3.11e-02 43_[+4(1.45e-05)]_29 chrX:601628-601708 9.25e-02 80 chrV:4491467-4491547 2.07e-02 3_[+3(1.38e-05)]_69 chrV:18712273-18712353 2.36e-01 80 chrII:476219-476299 8.24e-01 80 chrV:13962173-13962253 9.73e-01 80 chrIII:4508534-4508614 4.16e-01 80 chrII:6565248-6565328 8.91e-01 80 chrIII:1601620-1601700 8.59e-01 80 chrX:15600694-15600774 1.04e-01 80 chrIII:11203197-11203277 8.26e-01 80 chrX:8944197-8944277 1.25e-02 47_[+4(4.37e-05)]_25 chrII:4942477-4942557 7.96e-02 46_[+4(1.45e-05)]_26 chrIII:535318-535398 6.84e-01 80 chrX:16551435-16551515 5.60e-01 80 chrV:1805132-1805212 9.18e-01 80 chrII:4238050-4238130 4.01e-01 80 chrV:18723621-18723701 1.34e-01 80 chrV:14524362-14524442 1.53e-01 55_[+5(4.57e-05)]_17 chrI:9374768-9374848 2.57e-02 43_[+3(2.81e-05)]_29 chrI:9855531-9855611 2.63e-01 80 chrV:14697114-14697194 2.23e-01 80 chrIV:2665559-2665639 7.60e-01 80 chrX:14804818-14804898 1.43e-02 10_[+5(2.99e-05)]_62 chrIII:12351452-12351532 5.50e-01 80 chrX:8638916-8638996 9.47e-01 80 chrIII:4426977-4427057 4.36e-01 80 chrI:14708117-14708197 8.91e-01 80 chrV:10681344-10681424 2.23e-02 80 chrIII:8650371-8650451 6.18e-02 22_[+4(1.45e-05)]_50 chrX:7236894-7236974 2.52e-01 80 chrI:13310328-13310408 1.33e-02 29_[+4(7.34e-05)]_43 chrII:5772946-5773026 6.99e-01 80 chrIV:16388448-16388528 9.15e-01 80 chrI:315208-315288 6.94e-02 80 chrIII:7659567-7659647 4.09e-02 57_[+3(5.80e-05)]_15 chrI:14721581-14721661 2.27e-01 80 chrIV:11605063-11605143 4.18e-04 18_[+3(2.81e-05)]_16_[+5(4.57e-05)]_\ 30 chrIII:3066056-3066136 2.39e-01 34_[+2(6.14e-05)]_[+2(6.14e-05)]_\ [+2(6.14e-05)]_[+2(6.14e-05)]_[+2(6.14e-05)]_6 chrI:6283641-6283721 8.36e-01 80 chrV:14855811-14855891 4.11e-01 80 chrIV:2990597-2990677 1.86e-01 80 chrX:8386181-8386261 4.37e-01 80 chrIII:13225220-13225300 9.71e-01 80 chrIV:10403250-10403330 6.23e-01 80 chrIV:3654330-3654410 3.33e-01 80 chrX:17030657-17030737 9.17e-03 17_[+2(6.14e-05)]_20_[+5(2.99e-05)]_\ [+5(2.99e-05)]_[+5(2.99e-05)]_[+5(2.99e-05)]_3 chrX:7478623-7478703 1.71e-01 58_[+1(9.82e-05)]_14 chrIII:8874313-8874393 1.67e-01 80 chrIII:8106665-8106745 5.62e-01 80 chrIV:4026201-4026281 3.85e-01 80 chrV:1875728-1875808 7.65e-01 80 chrX:15275441-15275521 2.81e-03 57_[+5(2.99e-05)]_[+5(2.99e-05)]_7 chrIV:11857315-11857395 3.16e-02 48_[+3(5.80e-05)]_24 chrV:11082734-11082814 5.42e-01 80 chrI:8530088-8530168 2.51e-02 52_[+4(1.45e-05)]_20 chrIII:11792772-11792852 6.11e-01 80 chrI:1651380-1651460 3.05e-02 31_[+2(6.14e-05)]_41 chrIV:957998-958078 4.07e-01 80 chrV:11641448-11641528 1.96e-02 32_[+3(5.80e-05)]_40 chrIV:16946907-16946987 8.42e-01 80 chrI:882727-882807 5.35e-01 80 chrIII:1600824-1600904 2.97e-01 80 chrIII:5769855-5769935 4.27e-01 80 chrI:6407336-6407416 5.39e-01 80 chrI:488353-488433 1.27e-02 23_[+2(6.14e-05)]_49 chrIII:7030615-7030695 3.28e-01 45_[+2(6.14e-05)]_[+2(6.14e-05)]_19 chrX:13781576-13781656 1.78e-01 80 chrI:7712577-7712657 4.36e-01 80 chrX:16604714-16604794 6.74e-02 18_[+4(2.85e-05)]_54 chrX:12692150-12692230 1.46e-01 80 chrII:3521469-3521549 4.96e-03 30_[+4(1.45e-05)]_42 chrX:8646412-8646492 3.21e-01 80 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n12.farnam.hpc.yale.internal ********************************************************************************