******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/worm/fasta/RankLinear2.0_40/pag-3.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrV:17512880-17512960 1.0000 80 chrV:16622894-16622974 1.0000 80 chrV:17022288-17022368 1.0000 80 chrV:19621124-19621204 1.0000 80 chrV:19544956-19545036 1.0000 80 chrV:17962684-17962764 1.0000 80 chrV:17952435-17952515 1.0000 80 chrV:17212469-17212549 1.0000 80 chrV:19509269-19509349 1.0000 80 chrV:18506940-18507020 1.0000 80 chrV:5284759-5284839 1.0000 80 chrI:933477-933557 1.0000 80 chrV:19999972-20000052 1.0000 80 chrV:16641362-16641442 1.0000 80 chrIV:385241-385321 1.0000 80 chrIII:931566-931646 1.0000 80 chrV:18699437-18699517 1.0000 80 chrIII:3499962-3500042 1.0000 80 chrX:5056376-5056456 1.0000 80 chrV:17989181-17989261 1.0000 80 chrV:17261541-17261621 1.0000 80 chrV:18832982-18833062 1.0000 80 chrV:18851648-18851728 1.0000 80 chrV:12510084-12510164 1.0000 80 chrI:10469112-10469192 1.0000 80 chrV:19733913-19733993 1.0000 80 chrV:19371892-19371972 1.0000 80 chrV:17928236-17928316 1.0000 80 chrV:19752867-19752947 1.0000 80 chrI:12061745-12061825 1.0000 80 chrIII:3476420-3476500 1.0000 80 chrI:4976349-4976429 1.0000 80 chrIII:10123672-10123752 1.0000 80 chrII:12042396-12042476 1.0000 80 chrV:16553127-16553207 1.0000 80 chrV:19555457-19555537 1.0000 80 chrV:17142779-17142859 1.0000 80 chrV:19829302-19829382 1.0000 80 chrI:1415949-1416029 1.0000 80 chrV:20001145-20001225 1.0000 80 chrII:5836539-5836619 1.0000 80 chrV:1197364-1197444 1.0000 80 chrV:19358131-19358211 1.0000 80 chrV:18873989-18874069 1.0000 80 chrX:13590728-13590808 1.0000 80 chrV:20241538-20241618 1.0000 80 chrV:18677542-18677622 1.0000 80 chrV:9625799-9625879 1.0000 80 chrV:18447059-18447139 1.0000 80 chrI:1823110-1823190 1.0000 80 chrII:14528448-14528528 1.0000 80 chrIV:10869044-10869124 1.0000 80 chrX:8163722-8163802 1.0000 80 chrI:2487854-2487934 1.0000 80 chrI:2996344-2996424 1.0000 80 chrV:17858034-17858114 1.0000 80 chrI:8305568-8305648 1.0000 80 chrIII:10811129-10811209 1.0000 80 chrIV:14032723-14032803 1.0000 80 chrIV:8015997-8016077 1.0000 80 chrIII:11091816-11091896 1.0000 80 chrV:9219304-9219384 1.0000 80 chrII:8733547-8733627 1.0000 80 chrV:18635093-18635173 1.0000 80 chrIV:7402225-7402305 1.0000 80 chrI:2996105-2996185 1.0000 80 chrI:3516347-3516427 1.0000 80 chrIII:6551695-6551775 1.0000 80 chrIII:10856962-10857042 1.0000 80 chrX:10078256-10078336 1.0000 80 chrV:18120192-18120272 1.0000 80 chrX:14640153-14640233 1.0000 80 chrX:10435592-10435672 1.0000 80 chrI:1416148-1416228 1.0000 80 chrII:11751735-11751815 1.0000 80 chrI:6435899-6435979 1.0000 80 chrIV:11857349-11857429 1.0000 80 chrIII:10039500-10039580 1.0000 80 chrII:8358587-8358667 1.0000 80 chrV:10717010-10717090 1.0000 80 chrV:18734127-18734207 1.0000 80 chrIV:410645-410725 1.0000 80 chrII:12348856-12348936 1.0000 80 chrIII:6537341-6537421 1.0000 80 chrV:1003915-1003995 1.0000 80 chrX:2456192-2456272 1.0000 80 chrV:18389985-18390065 1.0000 80 chrIII:668409-668489 1.0000 80 chrII:2748397-2748477 1.0000 80 chrIII:4568709-4568789 1.0000 80 chrV:11449707-11449787 1.0000 80 chrI:5176382-5176462 1.0000 80 chrIII:11119443-11119523 1.0000 80 chrX:14841115-14841195 1.0000 80 chrV:4151657-4151737 1.0000 80 chrV:13715450-13715530 1.0000 80 chrIV:7619517-7619597 1.0000 80 chrX:16147905-16147985 1.0000 80 chrX:1018789-1018869 1.0000 80 chrV:14325141-14325221 1.0000 80 chrIII:8417363-8417443 1.0000 80 chrV:19212723-19212803 1.0000 80 chrI:5316291-5316371 1.0000 80 chrI:2659562-2659642 1.0000 80 chrV:18981159-18981239 1.0000 80 chrIV:1745706-1745786 1.0000 80 chrII:14063243-14063323 1.0000 80 chrIV:14371763-14371843 1.0000 80 chrIV:7654524-7654604 1.0000 80 chrI:27071-27151 1.0000 80 chrV:19723097-19723177 1.0000 80 chrIV:11026116-11026196 1.0000 80 chrX:14560262-14560342 1.0000 80 chrIV:17087574-17087654 1.0000 80 chrV:12465509-12465589 1.0000 80 chrI:13421148-13421228 1.0000 80 chrI:7251575-7251655 1.0000 80 chrX:9637881-9637961 1.0000 80 chrI:9854092-9854172 1.0000 80 chrI:1958552-1958632 1.0000 80 chrX:2802574-2802654 1.0000 80 chrX:12692046-12692126 1.0000 80 chrV:17749305-17749385 1.0000 80 chrV:12780416-12780496 1.0000 80 chrI:4674001-4674081 1.0000 80 chrIV:4042404-4042484 1.0000 80 chrX:949659-949739 1.0000 80 chrX:1302410-1302490 1.0000 80 chrII:11157779-11157859 1.0000 80 chrIII:11317232-11317312 1.0000 80 chrX:13598249-13598329 1.0000 80 chrV:7465665-7465745 1.0000 80 chrX:5592040-5592120 1.0000 80 chrI:7711771-7711851 1.0000 80 chrII:9566271-9566351 1.0000 80 chrI:7772669-7772749 1.0000 80 chrX:1858778-1858858 1.0000 80 chrII:9940653-9940733 1.0000 80 chrII:10248513-10248593 1.0000 80 chrIII:12558213-12558293 1.0000 80 chrX:12563763-12563843 1.0000 80 chrIV:9191345-9191425 1.0000 80 chrIII:640589-640669 1.0000 80 chrV:8862-8942 1.0000 80 chrII:8107266-8107346 1.0000 80 chrII:14154512-14154592 1.0000 80 chrIII:13068412-13068492 1.0000 80 chrX:10146742-10146822 1.0000 80 chrII:12494743-12494823 1.0000 80 chrI:5807463-5807543 1.0000 80 chrI:10026034-10026114 1.0000 80 chrIII:5555070-5555150 1.0000 80 chrIII:10461284-10461364 1.0000 80 chrI:9988918-9988998 1.0000 80 chrIII:5172627-5172707 1.0000 80 chrIII:5014057-5014137 1.0000 80 chrII:13976380-13976460 1.0000 80 chrV:19643192-19643272 1.0000 80 chrX:5729145-5729225 1.0000 80 chrX:6292295-6292375 1.0000 80 chrV:17951399-17951479 1.0000 80 chrII:14143978-14144058 1.0000 80 chrIV:796726-796806 1.0000 80 chrX:16446084-16446164 1.0000 80 chrX:3697757-3697837 1.0000 80 chrX:2852549-2852629 1.0000 80 chrIII:4223725-4223805 1.0000 80 chrIV:9477704-9477784 1.0000 80 chrII:11967685-11967765 1.0000 80 chrX:17505998-17506078 1.0000 80 chrX:12106161-12106241 1.0000 80 chrI:1435622-1435702 1.0000 80 chrI:8259523-8259603 1.0000 80 chrX:6593527-6593607 1.0000 80 chrX:6903127-6903207 1.0000 80 chrV:13003582-13003662 1.0000 80 chrI:12198621-12198701 1.0000 80 chrX:9958781-9958861 1.0000 80 chrIII:1424479-1424559 1.0000 80 chrI:9267041-9267121 1.0000 80 chrX:5812225-5812305 1.0000 80 chrI:9722141-9722221 1.0000 80 chrI:14113235-14113315 1.0000 80 chrV:9970305-9970385 1.0000 80 chrIV:8252993-8253073 1.0000 80 chrX:15354085-15354165 1.0000 80 chrIII:9668041-9668121 1.0000 80 chrX:15742018-15742098 1.0000 80 chrII:7184037-7184117 1.0000 80 chrV:6267564-6267644 1.0000 80 chrIII:8678510-8678590 1.0000 80 chrI:10642442-10642522 1.0000 80 chrIII:11371429-11371509 1.0000 80 chrIII:5305874-5305954 1.0000 80 chrI:6564581-6564661 1.0000 80 chrV:15873942-15874022 1.0000 80 chrIII:4171139-4171219 1.0000 80 chrX:489887-489967 1.0000 80 chrI:13331119-13331199 1.0000 80 chrIII:1418856-1418936 1.0000 80 chrV:8001126-8001206 1.0000 80 chrII:11534736-11534816 1.0000 80 chrV:19126023-19126103 1.0000 80 chrIV:390462-390542 1.0000 80 chrV:15002326-15002406 1.0000 80 chrX:13145337-13145417 1.0000 80 chrII:11484732-11484812 1.0000 80 chrIV:12594682-12594762 1.0000 80 chrIV:10252557-10252637 1.0000 80 chrII:8547135-8547215 1.0000 80 chrV:1871911-1871991 1.0000 80 chrV:15551793-15551873 1.0000 80 chrII:14795131-14795211 1.0000 80 chrX:2227115-2227195 1.0000 80 chrX:14115686-14115766 1.0000 80 chrIII:8043915-8043995 1.0000 80 chrIV:385507-385587 1.0000 80 chrIV:7574032-7574112 1.0000 80 chrX:10132705-10132785 1.0000 80 chrII:11453162-11453242 1.0000 80 chrX:11031358-11031438 1.0000 80 chrX:10188570-10188650 1.0000 80 chrX:5085659-5085739 1.0000 80 chrV:13468347-13468427 1.0000 80 chrV:53489-53569 1.0000 80 chrX:14015907-14015987 1.0000 80 chrX:9467719-9467799 1.0000 80 chrII:11960764-11960844 1.0000 80 chrIV:8927183-8927263 1.0000 80 chrII:255271-255351 1.0000 80 chrX:13306998-13307078 1.0000 80 chrII:5105240-5105320 1.0000 80 chrX:6207799-6207879 1.0000 80 chrI:5706971-5707051 1.0000 80 chrI:6082808-6082888 1.0000 80 chrIII:502703-502783 1.0000 80 chrII:10502838-10502918 1.0000 80 chrIV:14033838-14033918 1.0000 80 chrII:8028419-8028499 1.0000 80 chrII:5782036-5782116 1.0000 80 chrX:14063968-14064048 1.0000 80 chrI:6781798-6781878 1.0000 80 chrV:10808066-10808146 1.0000 80 chrX:7823135-7823215 1.0000 80 chrX:353291-353371 1.0000 80 chrX:11606180-11606260 1.0000 80 chrIV:4660546-4660626 1.0000 80 chrIV:11474227-11474307 1.0000 80 chrX:10963820-10963900 1.0000 80 chrIII:2768856-2768936 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/worm/inference_raw/MEME/RankLinear2.0_40_pag-3/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/worm/fasta/RankLinear2.0_40/pag-3.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.244 C 0.255 G 0.248 T 0.254 Background letter frequencies (from file dataset with add-one prior applied): A 0.244 C 0.255 G 0.248 T 0.254 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GARRAARA MEME-1 width = 8 sites = 38 llr = 313 E-value = 3.5e-003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GARRAARA MEME-1 Description -------------------------------------------------------------------------------- Simplified A 2a66a86a pos.-specific C :::::::: probability G 8:44:24: matrix T :::::::: bits 2.0 * * 1.8 * * * 1.6 * * * 1.4 ** ** * Relative 1.2 ** ** * Entropy 1.0 ******** (11.9 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GAAAAAAA consensus GG G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GARRAARA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIII:2768856-2768936 52 1.28e-05 AAAAAAAAAG GAAAAAAA CATCAAAAAA chrX:2227115-2227195 56 1.28e-05 CATTATAGTC GAAAAAAA TCAAAAAGAT chrI:13331119-13331199 13 1.28e-05 TGCAGGTCTA GAAAAAAA GGATTTCTGC chrI:2659562-2659642 1 1.28e-05 . GAAAAAAA AGTGACCTCC chrI:3516347-3516427 34 1.28e-05 Gaaaaaagaa gaaaaaaa aataaatcaa chrII:5105240-5105320 69 3.87e-05 GAGAACCTGT GAGAAAAA AGGG chrI:6564581-6564661 70 3.87e-05 AGAGACTTCA GAGAAAAA CGA chrV:17749305-17749385 61 3.87e-05 ATCAAATTAC GAGAAAAA TCTGAAGAGA chrI:1958552-1958632 50 3.87e-05 GCGGGGCCTG GAGAAAAA ATCTCATCGA chrI:9854092-9854172 17 3.87e-05 AGAAGAAGGA GAAGAAAA GGGACAACAC chrX:14841115-14841195 22 3.87e-05 AAAAAAGATT GAGAAAAA GGGGCCgaga chrI:5176382-5176462 36 3.87e-05 TTTCTTGACA GAGAAAAA GTGTGCGCAT chrIV:8015997-8016077 49 3.87e-05 GTATCTTCTA GAAGAAAA TTTCAAAAAT chrV:1197364-1197444 18 3.87e-05 TATTTTTCTC GAAGAAAA CGATACAACG chrI:10469112-10469192 43 3.87e-05 GTATCTTCTA GAAGAAAA TTTCAAAAAT chrX:9958781-9958861 19 6.49e-05 AGGCAATGTT GAGGAAAA GAGTCCAGTT chrX:15354085-15354165 35 9.13e-05 gagagtgaga gagaaaga aagcgagtaa chrIV:8252993-8253073 15 9.13e-05 TAAACGCATT GAAGAAGA CTCTCCAAAT chrII:14143978-14144058 14 9.13e-05 CGAAAAATTG GAAGAAGA AAGAACCCGA chrI:7711771-7711851 73 9.13e-05 TAGTAAGCGa gagaaaga chrI:4674001-4674081 47 9.13e-05 agaagaagac gaagaaga agatgaGGGG chrI:8305568-8305648 47 9.13e-05 GGAGGGTTCT gaagaaga agaagcacat chrV:13003582-13003662 18 1.05e-04 GTTGAGTGTT GAGGAAGA ATGCGTACTG chrX:5729145-5729225 21 1.05e-04 aggaggagag gaggaaga cgaCTACCAC chrX:10435592-10435672 25 1.05e-04 gaaacgggag gaggaaga gacggagaag chrI:9722141-9722221 11 1.30e-04 TCCGTGAAGT GAAAagaa ggagaagcag chrIII:5555070-5555150 1 1.30e-04 . AAAAAAAA ATTGTCTACT chrI:27071-27151 1 1.30e-04 . AAAAAAAA CTACAAAATT chrII:11534736-11534816 27 1.82e-04 TATTTTTCTC AAAGAAAA CAATACAACG chrII:11751735-11751815 30 1.82e-04 CTCGGCCGTG GAAGAGAA GACGGAGGAG chrI:2996105-2996185 26 1.82e-04 TATTTTTCTC GAAGAGAA CGATACAACG chrII:2748397-2748477 28 2.35e-04 AGCCAATCTG AAAAAAGA GACGCAGACA chrIII:10811129-10811209 35 2.35e-04 GGGGAGATAC GAAAAGGA GATCTGGCAC chrV:19358131-19358211 56 2.35e-04 CTTGTTGGCA GAGGAGAA GATGAGAGAG chrV:8001126-8001206 2 2.87e-04 A AAGAAAGA GAGCGTATAC chrX:949659-949739 63 2.87e-04 CACCGGTTTC GAGAAGGA GGCGTACGCA chrX:16446084-16446164 25 3.14e-04 TTTGGATGGG AAGGAAGA TGGAGACGGA chrX:489887-489967 72 4.18e-04 AGGAAAAGAC GAGAGAAA A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GARRAARA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:2768856-2768936 1.3e-05 51_[+1]_21 chrX:2227115-2227195 1.3e-05 55_[+1]_17 chrI:13331119-13331199 1.3e-05 12_[+1]_60 chrI:2659562-2659642 1.3e-05 [+1]_72 chrI:3516347-3516427 1.3e-05 33_[+1]_39 chrII:5105240-5105320 3.9e-05 68_[+1]_4 chrI:6564581-6564661 3.9e-05 69_[+1]_3 chrV:17749305-17749385 3.9e-05 60_[+1]_12 chrI:1958552-1958632 3.9e-05 49_[+1]_23 chrI:9854092-9854172 3.9e-05 16_[+1]_56 chrX:14841115-14841195 3.9e-05 21_[+1]_51 chrI:5176382-5176462 3.9e-05 35_[+1]_37 chrIV:8015997-8016077 3.9e-05 48_[+1]_24 chrV:1197364-1197444 3.9e-05 17_[+1]_55 chrI:10469112-10469192 3.9e-05 42_[+1]_30 chrX:9958781-9958861 6.5e-05 18_[+1]_54 chrX:15354085-15354165 9.1e-05 34_[+1]_38 chrIV:8252993-8253073 9.1e-05 14_[+1]_58 chrII:14143978-14144058 9.1e-05 13_[+1]_59 chrI:7711771-7711851 9.1e-05 72_[+1] chrI:4674001-4674081 9.1e-05 46_[+1]_26 chrI:8305568-8305648 9.1e-05 46_[+1]_26 chrV:13003582-13003662 0.0001 17_[+1]_55 chrX:5729145-5729225 0.0001 20_[+1]_52 chrX:10435592-10435672 0.0001 24_[+1]_48 chrI:9722141-9722221 0.00013 10_[+1]_62 chrIII:5555070-5555150 0.00013 [+1]_72 chrI:27071-27151 0.00013 [+1]_72 chrII:11534736-11534816 0.00018 26_[+1]_46 chrII:11751735-11751815 0.00018 29_[+1]_43 chrI:2996105-2996185 0.00018 25_[+1]_47 chrII:2748397-2748477 0.00023 27_[+1]_45 chrIII:10811129-10811209 0.00023 34_[+1]_38 chrV:19358131-19358211 0.00023 55_[+1]_17 chrV:8001126-8001206 0.00029 1_[+1]_71 chrX:949659-949739 0.00029 62_[+1]_10 chrX:16446084-16446164 0.00031 24_[+1]_48 chrX:489887-489967 0.00042 71_[+1]_1 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GARRAARA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GARRAARA width=8 seqs=38 chrIII:2768856-2768936 ( 52) GAAAAAAA 1 chrX:2227115-2227195 ( 56) GAAAAAAA 1 chrI:13331119-13331199 ( 13) GAAAAAAA 1 chrI:2659562-2659642 ( 1) GAAAAAAA 1 chrI:3516347-3516427 ( 34) GAAAAAAA 1 chrII:5105240-5105320 ( 69) GAGAAAAA 1 chrI:6564581-6564661 ( 70) GAGAAAAA 1 chrV:17749305-17749385 ( 61) GAGAAAAA 1 chrI:1958552-1958632 ( 50) GAGAAAAA 1 chrI:9854092-9854172 ( 17) GAAGAAAA 1 chrX:14841115-14841195 ( 22) GAGAAAAA 1 chrI:5176382-5176462 ( 36) GAGAAAAA 1 chrIV:8015997-8016077 ( 49) GAAGAAAA 1 chrV:1197364-1197444 ( 18) GAAGAAAA 1 chrI:10469112-10469192 ( 43) GAAGAAAA 1 chrX:9958781-9958861 ( 19) GAGGAAAA 1 chrX:15354085-15354165 ( 35) GAGAAAGA 1 chrIV:8252993-8253073 ( 15) GAAGAAGA 1 chrII:14143978-14144058 ( 14) GAAGAAGA 1 chrI:7711771-7711851 ( 73) GAGAAAGA 1 chrI:4674001-4674081 ( 47) GAAGAAGA 1 chrI:8305568-8305648 ( 47) GAAGAAGA 1 chrV:13003582-13003662 ( 18) GAGGAAGA 1 chrX:5729145-5729225 ( 21) GAGGAAGA 1 chrX:10435592-10435672 ( 25) GAGGAAGA 1 chrI:9722141-9722221 ( 11) GAAAAGAA 1 chrIII:5555070-5555150 ( 1) AAAAAAAA 1 chrI:27071-27151 ( 1) AAAAAAAA 1 chrII:11534736-11534816 ( 27) AAAGAAAA 1 chrII:11751735-11751815 ( 30) GAAGAGAA 1 chrI:2996105-2996185 ( 26) GAAGAGAA 1 chrII:2748397-2748477 ( 28) AAAAAAGA 1 chrIII:10811129-10811209 ( 35) GAAAAGGA 1 chrV:19358131-19358211 ( 56) GAGGAGAA 1 chrV:8001126-8001206 ( 2) AAGAAAGA 1 chrX:949659-949739 ( 63) GAGAAGGA 1 chrX:16446084-16446164 ( 25) AAGGAAGA 1 chrX:489887-489967 ( 72) GAGAGAAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GARRAARA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.3471 E= 3.5e-003 -63 -1189 176 -1189 204 -1189 -1189 -1189 118 -1189 85 -1189 118 -1189 85 -1189 200 -1189 -323 -1189 179 -1189 -65 -1189 137 -1189 57 -1189 204 -1189 -1189 -1189 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GARRAARA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 38 E= 3.5e-003 0.157895 0.000000 0.842105 0.000000 1.000000 0.000000 0.000000 0.000000 0.552632 0.000000 0.447368 0.000000 0.552632 0.000000 0.447368 0.000000 0.973684 0.000000 0.026316 0.000000 0.842105 0.000000 0.157895 0.000000 0.631579 0.000000 0.368421 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GARRAARA MEME-1 regular expression -------------------------------------------------------------------------------- GA[AG][AG]AA[AG]A -------------------------------------------------------------------------------- Time 7.97 secs. ******************************************************************************** ******************************************************************************** MOTIF AGAGACGC MEME-2 width = 8 sites = 13 llr = 134 E-value = 1.2e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif AGAGACGC MEME-2 Description -------------------------------------------------------------------------------- Simplified A a:a2a::: pos.-specific C :::::8:a probability G :a:8::a: matrix T :::::2:: bits 2.0 *** * ** 1.8 *** * ** 1.6 *** * ** 1.4 ******** Relative 1.2 ******** Entropy 1.0 ******** (14.9 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AGAGACGC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAGACGC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrV:13003582-13003662 65 1.44e-05 ACTTCACATG AGAGACGC AGACATAC chrIII:4223725-4223805 73 1.44e-05 GGGAGTATCA AGAGACGC chrX:6292295-6292375 71 1.44e-05 CATTTGAGTA AGAGACGC AA chrIII:5014057-5014137 34 1.44e-05 AGGCCCAATA AGAGACGC AGAGAAACGA chrI:9988918-9988998 52 1.44e-05 GGAAGGTGAG AGAGACGC AGAAACGAGA chrV:8862-8942 41 1.44e-05 TCCGAATCGC AGAGACGC AGCAAGCGTT chrX:14560262-14560342 61 1.44e-05 TCGGGAAGCT AGAGACGC AGCCAGTTCC chrIII:6537341-6537421 32 1.44e-05 CGATCGATGC AGAGACGC TGCCCGCTTG chrI:1415949-1416029 6 1.44e-05 GCGGA AGAGACGC CACGAACTAG chrX:17505998-17506078 29 2.88e-05 TGGAGACGGC AGAGATGC TAGTGGAATC chrI:1416148-1416228 39 2.88e-05 CTAAATTCCA AGAGATGC ATTGCCTCCT chrII:11453162-11453242 12 4.29e-05 TTATAAAACG AGAAACGC GCAATGGTAT chrV:19371892-19371972 27 4.29e-05 CCAAGGCACT AGAAACGC GTCAAAGCAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAGACGC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:13003582-13003662 1.4e-05 64_[+2]_8 chrIII:4223725-4223805 1.4e-05 72_[+2] chrX:6292295-6292375 1.4e-05 70_[+2]_2 chrIII:5014057-5014137 1.4e-05 33_[+2]_39 chrI:9988918-9988998 1.4e-05 51_[+2]_21 chrV:8862-8942 1.4e-05 40_[+2]_32 chrX:14560262-14560342 1.4e-05 60_[+2]_12 chrIII:6537341-6537421 1.4e-05 31_[+2]_41 chrI:1415949-1416029 1.4e-05 5_[+2]_67 chrX:17505998-17506078 2.9e-05 28_[+2]_44 chrI:1416148-1416228 2.9e-05 38_[+2]_34 chrII:11453162-11453242 4.3e-05 11_[+2]_61 chrV:19371892-19371972 4.3e-05 26_[+2]_46 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAGACGC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AGAGACGC width=8 seqs=13 chrV:13003582-13003662 ( 65) AGAGACGC 1 chrIII:4223725-4223805 ( 73) AGAGACGC 1 chrX:6292295-6292375 ( 71) AGAGACGC 1 chrIII:5014057-5014137 ( 34) AGAGACGC 1 chrI:9988918-9988998 ( 52) AGAGACGC 1 chrV:8862-8942 ( 41) AGAGACGC 1 chrX:14560262-14560342 ( 61) AGAGACGC 1 chrIII:6537341-6537421 ( 32) AGAGACGC 1 chrI:1415949-1416029 ( 6) AGAGACGC 1 chrX:17505998-17506078 ( 29) AGAGATGC 1 chrI:1416148-1416228 ( 39) AGAGATGC 1 chrII:11453162-11453242 ( 12) AGAAACGC 1 chrV:19371892-19371972 ( 27) AGAAACGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAGACGC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.985 E= 1.2e+000 204 -1035 -1035 -1035 -1035 -1035 201 -1035 204 -1035 -1035 -1035 -66 -1035 177 -1035 204 -1035 -1035 -1035 -1035 173 -1035 -72 -1035 -1035 201 -1035 -1035 197 -1035 -1035 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAGACGC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 13 E= 1.2e+000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.153846 0.000000 0.846154 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.846154 0.000000 0.153846 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAGACGC MEME-2 regular expression -------------------------------------------------------------------------------- AGAGACGC -------------------------------------------------------------------------------- Time 11.69 secs. ******************************************************************************** ******************************************************************************** MOTIF TKMAAAAA MEME-3 width = 8 sites = 18 llr = 168 E-value = 5.0e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif TKMAAAAA MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::5aaaa8 pos.-specific C ::5::::: probability G :3:::::: matrix T a7:::::2 bits 2.0 * **** 1.8 * **** 1.6 * **** 1.4 * **** Relative 1.2 * ***** Entropy 1.0 ******** (13.5 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TTAAAAAA consensus GC T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKMAAAAA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:7823135-7823215 36 2.78e-05 TCTAACCAGA TTCAAAAA TCTACTCATA chrI:10026034-10026114 72 2.78e-05 ACTGCCAATT TTCAAAAA C chrII:11157779-11157859 3 2.78e-05 AT TTAAAAAA TGCAAAAAGA chrI:7251575-7251655 10 2.78e-05 AAACACTTT TTAAAAAA TTGTTTTTTT chrIV:7654524-7654604 12 2.78e-05 GCGGTGAGAT TTCAAAAA GGTTTTGTGT chrV:18635093-18635173 69 2.78e-05 TTACGCTGAA TTCAAAAA TCAA chrIV:8015997-8016077 58 2.78e-05 AGAAGAAAAT TTCAAAAA TCAACGTGCG chrI:10469112-10469192 52 2.78e-05 AGAAGAAAAT TTCAAAAA TCAACGTGCG chrV:17989181-17989261 48 2.78e-05 TGGCCTAACT TTCAAAAA CCTCGGCCAC chrI:14113235-14113315 35 5.50e-05 GTGCGCCACT TGCAAAAA GGGGCGGAGT chrIII:5555070-5555150 18 5.50e-05 AATTGTCTAC TGAAAAAA TCTCTGCCTG chrX:14841115-14841195 10 5.50e-05 TTCCTCAAG TGAAAAAA GATTGAGAAA chrI:3516347-3516427 23 5.50e-05 TATTTAAATC TGaaaaaa gaagaaaaaa chrII:14528448-14528528 9 5.50e-05 TAGAACTC TGAAAAAA CTAAAATTGC chrIV:4660546-4660626 60 8.40e-05 GATTTTCTCG TTAAAAAT TTTTTGTATT chrII:14143978-14144058 73 8.40e-05 GTTTGAGTAT TTCAAAAT chrV:18447059-18447139 29 8.40e-05 aattaattta ttaaaaat acgttgaaat chrIII:11091816-11091896 3 1.12e-04 AC TGAAAAAT GACAAAAATT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKMAAAAA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:7823135-7823215 2.8e-05 35_[+3]_37 chrI:10026034-10026114 2.8e-05 71_[+3]_1 chrII:11157779-11157859 2.8e-05 2_[+3]_70 chrI:7251575-7251655 2.8e-05 9_[+3]_63 chrIV:7654524-7654604 2.8e-05 11_[+3]_61 chrV:18635093-18635173 2.8e-05 68_[+3]_4 chrIV:8015997-8016077 2.8e-05 57_[+3]_15 chrI:10469112-10469192 2.8e-05 51_[+3]_21 chrV:17989181-17989261 2.8e-05 47_[+3]_25 chrI:14113235-14113315 5.5e-05 34_[+3]_38 chrIII:5555070-5555150 5.5e-05 17_[+3]_55 chrX:14841115-14841195 5.5e-05 9_[+3]_63 chrI:3516347-3516427 5.5e-05 22_[+3]_50 chrII:14528448-14528528 5.5e-05 8_[+3]_64 chrIV:4660546-4660626 8.4e-05 59_[+3]_13 chrII:14143978-14144058 8.4e-05 72_[+3] chrV:18447059-18447139 8.4e-05 28_[+3]_44 chrIII:11091816-11091896 0.00011 2_[+3]_70 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKMAAAAA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TKMAAAAA width=8 seqs=18 chrX:7823135-7823215 ( 36) TTCAAAAA 1 chrI:10026034-10026114 ( 72) TTCAAAAA 1 chrII:11157779-11157859 ( 3) TTAAAAAA 1 chrI:7251575-7251655 ( 10) TTAAAAAA 1 chrIV:7654524-7654604 ( 12) TTCAAAAA 1 chrV:18635093-18635173 ( 69) TTCAAAAA 1 chrIV:8015997-8016077 ( 58) TTCAAAAA 1 chrI:10469112-10469192 ( 52) TTCAAAAA 1 chrV:17989181-17989261 ( 48) TTCAAAAA 1 chrI:14113235-14113315 ( 35) TGCAAAAA 1 chrIII:5555070-5555150 ( 18) TGAAAAAA 1 chrX:14841115-14841195 ( 10) TGAAAAAA 1 chrI:3516347-3516427 ( 23) TGAAAAAA 1 chrII:14528448-14528528 ( 9) TGAAAAAA 1 chrIV:4660546-4660626 ( 60) TTAAAAAT 1 chrII:14143978-14144058 ( 73) TTCAAAAT 1 chrV:18447059-18447139 ( 29) TTAAAAAT 1 chrIII:11091816-11091896 ( 3) TGAAAAAT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKMAAAAA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.3895 E= 5.0e+001 -1081 -1081 -1081 198 -1081 -1081 43 139 104 97 -1081 -1081 204 -1081 -1081 -1081 204 -1081 -1081 -1081 204 -1081 -1081 -1081 204 -1081 -1081 -1081 167 -1081 -1081 -19 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKMAAAAA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 18 E= 5.0e+001 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.333333 0.666667 0.500000 0.500000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.777778 0.000000 0.000000 0.222222 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKMAAAAA MEME-3 regular expression -------------------------------------------------------------------------------- T[TG][AC]AAAA[AT] -------------------------------------------------------------------------------- Time 15.32 secs. ******************************************************************************** ******************************************************************************** MOTIF AGCTCAGT MEME-4 width = 8 sites = 9 llr = 95 E-value = 9.4e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif AGCTCAGT MEME-4 Description -------------------------------------------------------------------------------- Simplified A a::::a:: pos.-specific C ::a:a::: probability G :a:2::a: matrix T :::8:::a bits 2.0 *** **** 1.8 *** **** 1.6 *** **** 1.4 *** **** Relative 1.2 ******** Entropy 1.0 ******** (15.2 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AGCTCAGT consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGCTCAGT MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrI:6781798-6781878 13 1.54e-05 CTGGGGGTAT AGCTCAGT GGCAGAGCAT chrIV:12594682-12594762 66 1.54e-05 CCGCCCGGTT AGCTCAGT CGGTAGA chrV:19126023-19126103 29 1.54e-05 CTGCCTCGAT AGCTCAGT TGGGAGAGCG chrIII:5305874-5305954 39 1.54e-05 GCGCCCTTAT AGCTCAGT GGTAGAGCGT chrII:12494743-12494823 6 1.54e-05 GCCAT AGCTCAGT CGGTTAGAGC chrX:12563763-12563843 33 1.54e-05 GTGCCCTTAT AGCTCAGT GGTAGAGCGT chrX:12692046-12692126 35 1.54e-05 CCCCCAATTC AGCTCAGT CTTGTTCCAC chrIV:8927183-8927263 26 3.04e-05 CGTCGAGGGA AGCGCAGT CGGTTGCGCA chrX:3697757-3697837 7 3.04e-05 TTCCGT AGCGCAGT AGGCAGCGCG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGCTCAGT MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:6781798-6781878 1.5e-05 12_[+4]_60 chrIV:12594682-12594762 1.5e-05 65_[+4]_7 chrV:19126023-19126103 1.5e-05 28_[+4]_44 chrIII:5305874-5305954 1.5e-05 38_[+4]_34 chrII:12494743-12494823 1.5e-05 5_[+4]_67 chrX:12563763-12563843 1.5e-05 32_[+4]_40 chrX:12692046-12692126 1.5e-05 34_[+4]_38 chrIV:8927183-8927263 3e-05 25_[+4]_47 chrX:3697757-3697837 3e-05 6_[+4]_66 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGCTCAGT MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AGCTCAGT width=8 seqs=9 chrI:6781798-6781878 ( 13) AGCTCAGT 1 chrIV:12594682-12594762 ( 66) AGCTCAGT 1 chrV:19126023-19126103 ( 29) AGCTCAGT 1 chrIII:5305874-5305954 ( 39) AGCTCAGT 1 chrII:12494743-12494823 ( 6) AGCTCAGT 1 chrX:12563763-12563843 ( 33) AGCTCAGT 1 chrX:12692046-12692126 ( 35) AGCTCAGT 1 chrIV:8927183-8927263 ( 26) AGCGCAGT 1 chrX:3697757-3697837 ( 7) AGCGCAGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGCTCAGT MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.1193 E= 9.4e+003 204 -982 -982 -982 -982 -982 201 -982 -982 197 -982 -982 -982 -982 -16 162 -982 197 -982 -982 204 -982 -982 -982 -982 -982 201 -982 -982 -982 -982 198 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGCTCAGT MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 9 E= 9.4e+003 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.222222 0.777778 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGCTCAGT MEME-4 regular expression -------------------------------------------------------------------------------- AGC[TG]CAGT -------------------------------------------------------------------------------- Time 18.93 secs. ******************************************************************************** ******************************************************************************** MOTIF YTTTTCBY MEME-5 width = 8 sites = 56 llr = 408 E-value = 1.8e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif YTTTTCBY MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C 4:22:936 probability G ::::::3: matrix T 6a88a154 bits 2.0 * * 1.8 * * 1.6 * ** 1.4 * *** Relative 1.2 ***** Entropy 1.0 ****** * (10.5 bits) 0.8 ****** * 0.6 ****** * 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TTTTTCTC consensus C C GT sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTTTTCBY MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:353291-353371 49 1.75e-05 TCTCTCCACA TTTTTCTC TTTTCACTCA chrIV:10252557-10252637 9 1.75e-05 tctctctc tttttctc tcttttttcC chrII:11534736-11534816 19 1.75e-05 CCAAACGCTA TTTTTCTC AAAGAAAACA chrII:9940653-9940733 45 1.75e-05 CTTTTTCGGA TTTTTCTC AATTTCGTTA chrI:6435899-6435979 5 1.75e-05 CCCT TTTTTCTC TCCCTCACTT chrI:2996105-2996185 18 1.75e-05 CCAAACGCTA TTTTTCTC GAAGAGAACG chrIII:10811129-10811209 67 1.75e-05 CCAAACGCTA TTTTTCTC GAAGAA chrV:1197364-1197444 10 1.75e-05 CAAACGCTA TTTTTCTC GAAGAAAACG chrIV:4042404-4042484 32 5.24e-05 AACTCGCGCT CTTTTCTC GTGGCCGCGG chrI:5176382-5176462 24 5.24e-05 TGGGGCCTCG TTTTTCTT GACAGAGAAA chrV:1003915-1003995 69 5.24e-05 TTTTGTATTC TTTTTCTT AGCT chrIII:8043915-8043995 50 8.69e-05 CGCTATTCTC TTTTTCGC GATGTCTCAG chrV:8001126-8001206 47 1.04e-04 TTTCTGTCCT TTTTTCCC GCatctctga chrI:10026034-10026114 25 1.04e-04 CTCCGGAACA TTTTTCCC CAGTGGGACG chrV:53489-53569 70 1.39e-04 acatttttag tttttcgt gag chrIV:390462-390542 45 1.39e-04 cgccgcgcgg cttttcgc aaggctgccg chrIII:6551695-6551775 22 1.39e-04 GTTGCTCCCC TTTTTCGT ATCTCCCCTT chrIII:10123672-10123752 58 1.39e-04 CGTATCTCCA TTTTTCGT ATCTCCCCTT chrIII:3499962-3500042 12 1.39e-04 CCAATTTTCC CTTTTCGC ATTTCCCCTT chrX:13145337-13145417 67 1.74e-04 GGGGCGGAGA TTTTTCCT CGAGGC chrIII:11119443-11119523 1 1.74e-04 . TTTTTCCT ATGCGCAGTA chrV:18873989-18874069 2 1.74e-04 C CTTTTCCC GGTCATGTCT chrV:16641362-16641442 26 1.74e-04 CTCCCTTGGT CTTTTCCC CATTCATTCT chrIV:385507-385587 7 1.91e-04 GATCCC CTTTTCGT TCTGCTCCCC chrIII:12558213-12558293 67 1.91e-04 ACTCACTGGG CTTTTCGT CCGCAA chrII:10248513-10248593 10 1.91e-04 TCTGCTCCC CTTTTCGT GGGGCCTCAG chrI:2996344-2996424 2 1.91e-04 C CTTTTCGT GGGGCCTCAA chrV:16553127-16553207 37 1.91e-04 TGCAGATCCC CTTTTCGT GGGGCCTCGT chrIV:14033838-14033918 72 2.08e-04 TCTCGTTCTC CTTTTCCT C chrIV:14371763-14371843 15 2.08e-04 tcttcgtcta cttttcct cgtcCATCGC chrX:2852549-2852629 10 2.26e-04 CGGCGTCTC TTCTTCTC TCACGCTCGC chrIII:502703-502783 10 2.61e-04 CCCCATTTA CTCTTCTC TCTGCGACTC chrX:1858778-1858858 5 2.61e-04 CGCT CTCTTCTC TATTCCAATG chrV:14325141-14325221 26 2.61e-04 TCACGAGCTA CTCTTCTC TTCTTGGCTG chrX:2456192-2456272 49 2.61e-04 AGGcttcttc ttcttctt tgtcggcttc chrV:12465509-12465589 61 2.78e-04 TCTTTTTCTG TTTCTCTC ATCTTCAGAA chrI:933477-933557 34 2.78e-04 ACCAATTATC TTTCTCTC TGtggcttcc chrI:5807463-5807543 26 2.96e-04 CTGAAGTATC CTCTTCTT CCTATTCAGT chrV:19544956-19545036 19 2.96e-04 TCTTCTGGGC CTCTTCTT GTGCCTTTTT chrIII:5305874-5305954 15 3.31e-04 TGTCTAATCA CTTCTCTC GCCGCGGCGC chrII:13976380-13976460 41 3.31e-04 GGCTTGCACA CTTCTCTC TGGCATCCAA chrI:5316291-5316371 20 3.31e-04 CCATCAGATC CTTCTCTC TCTCTCTTTC chrV:9970305-9970385 18 4.70e-04 ACGCGCGCGC CTCTTCCC CACTGCACCA chrI:9854092-9854172 55 4.70e-04 CACACTGAAA TTCTTCCT tcgctctctc chrII:255271-255351 36 5.22e-04 CGCGAAAATG TTTTTTTC AAAGCGATGC chrX:2227115-2227195 73 5.22e-04 ATCAAAAAGA TTTCTCCC chrX:2802574-2802654 39 5.22e-04 TTCCGCTCTG TTTCTCCC CCCAGTTGCC chrII:2748397-2748477 63 5.22e-04 GAGACGTCAC CTCTTCGT AACGGACAGC chrX:11031358-11031438 70 5.74e-04 CTTCCCCAAT CTCTTCCT CAA chrX:6292295-6292375 10 5.74e-04 AACCCCAGA CTTCTCGC ATGCAAAGCG chrI:2659562-2659642 47 5.74e-04 GATCTATCTA TTTCTCGT TCTCAATTAT chrII:11751735-11751815 14 5.74e-04 ACTAACATCT CTCTTCCT CGGCCGTGGA chrIII:2768856-2768936 10 6.44e-04 GCACGTGGT TTTTTTTT AATTATTATT chrV:18981159-18981239 73 6.44e-04 GGGTTTTTAT TTTTTTTT chrV:17512880-17512960 15 6.44e-04 cgaaaggtgg tttttttt gccgcggccg chrI:1823110-1823190 59 7.30e-04 TATCTTAAAC TTTTTTGC TAAAAATATC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTTTTCBY MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:353291-353371 1.7e-05 48_[+5]_24 chrIV:10252557-10252637 1.7e-05 8_[+5]_64 chrII:11534736-11534816 1.7e-05 18_[+5]_54 chrII:9940653-9940733 1.7e-05 44_[+5]_28 chrI:6435899-6435979 1.7e-05 4_[+5]_68 chrI:2996105-2996185 1.7e-05 17_[+5]_55 chrIII:10811129-10811209 1.7e-05 66_[+5]_6 chrV:1197364-1197444 1.7e-05 9_[+5]_63 chrIV:4042404-4042484 5.2e-05 31_[+5]_41 chrI:5176382-5176462 5.2e-05 23_[+5]_49 chrV:1003915-1003995 5.2e-05 68_[+5]_4 chrIII:8043915-8043995 8.7e-05 49_[+5]_23 chrV:8001126-8001206 0.0001 46_[+5]_26 chrI:10026034-10026114 0.0001 24_[+5]_48 chrV:53489-53569 0.00014 69_[+5]_3 chrIV:390462-390542 0.00014 44_[+5]_28 chrIII:6551695-6551775 0.00014 21_[+5]_51 chrIII:10123672-10123752 0.00014 57_[+5]_15 chrIII:3499962-3500042 0.00014 11_[+5]_61 chrX:13145337-13145417 0.00017 66_[+5]_6 chrIII:11119443-11119523 0.00017 [+5]_72 chrV:18873989-18874069 0.00017 1_[+5]_71 chrV:16641362-16641442 0.00017 25_[+5]_47 chrIV:385507-385587 0.00019 6_[+5]_66 chrIII:12558213-12558293 0.00019 66_[+5]_6 chrII:10248513-10248593 0.00019 9_[+5]_63 chrI:2996344-2996424 0.00019 1_[+5]_71 chrV:16553127-16553207 0.00019 36_[+5]_36 chrIV:14033838-14033918 0.00021 71_[+5]_1 chrIV:14371763-14371843 0.00021 14_[+5]_58 chrX:2852549-2852629 0.00023 9_[+5]_63 chrIII:502703-502783 0.00026 9_[+5]_63 chrX:1858778-1858858 0.00026 4_[+5]_68 chrV:14325141-14325221 0.00026 25_[+5]_47 chrX:2456192-2456272 0.00026 48_[+5]_24 chrV:12465509-12465589 0.00028 60_[+5]_12 chrI:933477-933557 0.00028 33_[+5]_39 chrI:5807463-5807543 0.0003 25_[+5]_47 chrV:19544956-19545036 0.0003 18_[+5]_54 chrIII:5305874-5305954 0.00033 14_[+5]_58 chrII:13976380-13976460 0.00033 40_[+5]_32 chrI:5316291-5316371 0.00033 19_[+5]_53 chrV:9970305-9970385 0.00047 17_[+5]_55 chrI:9854092-9854172 0.00047 54_[+5]_18 chrII:255271-255351 0.00052 35_[+5]_37 chrX:2227115-2227195 0.00052 72_[+5] chrX:2802574-2802654 0.00052 38_[+5]_34 chrII:2748397-2748477 0.00052 62_[+5]_10 chrX:11031358-11031438 0.00057 69_[+5]_3 chrX:6292295-6292375 0.00057 9_[+5]_63 chrI:2659562-2659642 0.00057 46_[+5]_26 chrII:11751735-11751815 0.00057 13_[+5]_59 chrIII:2768856-2768936 0.00064 9_[+5]_63 chrV:18981159-18981239 0.00064 72_[+5] chrV:17512880-17512960 0.00064 14_[+5]_58 chrI:1823110-1823190 0.00073 58_[+5]_14 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTTTTCBY MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF YTTTTCBY width=8 seqs=56 chrX:353291-353371 ( 49) TTTTTCTC 1 chrIV:10252557-10252637 ( 9) TTTTTCTC 1 chrII:11534736-11534816 ( 19) TTTTTCTC 1 chrII:9940653-9940733 ( 45) TTTTTCTC 1 chrI:6435899-6435979 ( 5) TTTTTCTC 1 chrI:2996105-2996185 ( 18) TTTTTCTC 1 chrIII:10811129-10811209 ( 67) TTTTTCTC 1 chrV:1197364-1197444 ( 10) TTTTTCTC 1 chrIV:4042404-4042484 ( 32) CTTTTCTC 1 chrI:5176382-5176462 ( 24) TTTTTCTT 1 chrV:1003915-1003995 ( 69) TTTTTCTT 1 chrIII:8043915-8043995 ( 50) TTTTTCGC 1 chrV:8001126-8001206 ( 47) TTTTTCCC 1 chrI:10026034-10026114 ( 25) TTTTTCCC 1 chrV:53489-53569 ( 70) TTTTTCGT 1 chrIV:390462-390542 ( 45) CTTTTCGC 1 chrIII:6551695-6551775 ( 22) TTTTTCGT 1 chrIII:10123672-10123752 ( 58) TTTTTCGT 1 chrIII:3499962-3500042 ( 12) CTTTTCGC 1 chrX:13145337-13145417 ( 67) TTTTTCCT 1 chrIII:11119443-11119523 ( 1) TTTTTCCT 1 chrV:18873989-18874069 ( 2) CTTTTCCC 1 chrV:16641362-16641442 ( 26) CTTTTCCC 1 chrIV:385507-385587 ( 7) CTTTTCGT 1 chrIII:12558213-12558293 ( 67) CTTTTCGT 1 chrII:10248513-10248593 ( 10) CTTTTCGT 1 chrI:2996344-2996424 ( 2) CTTTTCGT 1 chrV:16553127-16553207 ( 37) CTTTTCGT 1 chrIV:14033838-14033918 ( 72) CTTTTCCT 1 chrIV:14371763-14371843 ( 15) CTTTTCCT 1 chrX:2852549-2852629 ( 10) TTCTTCTC 1 chrIII:502703-502783 ( 10) CTCTTCTC 1 chrX:1858778-1858858 ( 5) CTCTTCTC 1 chrV:14325141-14325221 ( 26) CTCTTCTC 1 chrX:2456192-2456272 ( 49) TTCTTCTT 1 chrV:12465509-12465589 ( 61) TTTCTCTC 1 chrI:933477-933557 ( 34) TTTCTCTC 1 chrI:5807463-5807543 ( 26) CTCTTCTT 1 chrV:19544956-19545036 ( 19) CTCTTCTT 1 chrIII:5305874-5305954 ( 15) CTTCTCTC 1 chrII:13976380-13976460 ( 41) CTTCTCTC 1 chrI:5316291-5316371 ( 20) CTTCTCTC 1 chrV:9970305-9970385 ( 18) CTCTTCCC 1 chrI:9854092-9854172 ( 55) TTCTTCCT 1 chrII:255271-255351 ( 36) TTTTTTTC 1 chrX:2227115-2227195 ( 73) TTTCTCCC 1 chrX:2802574-2802654 ( 39) TTTCTCCC 1 chrII:2748397-2748477 ( 63) CTCTTCGT 1 chrX:11031358-11031438 ( 70) CTCTTCCT 1 chrX:6292295-6292375 ( 10) CTTCTCGC 1 chrI:2659562-2659642 ( 47) TTTCTCGT 1 chrII:11751735-11751815 ( 14) CTCTTCCT 1 chrIII:2768856-2768936 ( 10) TTTTTTTT 1 chrV:18981159-18981239 ( 73) TTTTTTTT 1 chrV:17512880-17512960 ( 15) TTTTTTTT 1 chrI:1823110-1823190 ( 59) TTTTTTGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTTTTCBY MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.0167 E= 1.8e+003 -1245 81 -1245 113 -1245 -1245 -1245 198 -1245 -25 -1245 163 -1245 -67 -1245 173 -1245 -1245 -1245 198 -1245 184 -1245 -151 -1245 -3 11 93 -1245 112 -1245 82 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTTTTCBY MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 56 E= 1.8e+003 0.000000 0.446429 0.000000 0.553571 0.000000 0.000000 0.000000 1.000000 0.000000 0.214286 0.000000 0.785714 0.000000 0.160714 0.000000 0.839286 0.000000 0.000000 0.000000 1.000000 0.000000 0.910714 0.000000 0.089286 0.000000 0.250000 0.267857 0.482143 0.000000 0.553571 0.000000 0.446429 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTTTTCBY MEME-5 regular expression -------------------------------------------------------------------------------- [TC]T[TC]TTC[TGC][CT] -------------------------------------------------------------------------------- Time 22.51 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:17512880-17512960 1.95e-01 80 chrV:16622894-16622974 3.59e-01 80 chrV:17022288-17022368 9.95e-01 80 chrV:19621124-19621204 9.62e-01 80 chrV:19544956-19545036 6.55e-01 80 chrV:17962684-17962764 7.24e-01 80 chrV:17952435-17952515 3.33e-01 80 chrV:17212469-17212549 6.87e-01 80 chrV:19509269-19509349 7.35e-01 80 chrV:18506940-18507020 9.28e-01 80 chrV:5284759-5284839 9.65e-01 80 chrI:933477-933557 4.60e-01 80 chrV:19999972-20000052 9.44e-01 80 chrV:16641362-16641442 4.45e-01 80 chrIV:385241-385321 2.08e-01 80 chrIII:931566-931646 3.42e-01 80 chrV:18699437-18699517 9.54e-01 80 chrIII:3499962-3500042 8.64e-02 80 chrX:5056376-5056456 9.43e-01 80 chrV:17989181-17989261 5.22e-02 47_[+3(2.78e-05)]_25 chrV:17261541-17261621 8.07e-01 80 chrV:18832982-18833062 1.91e-01 80 chrV:18851648-18851728 1.53e-01 80 chrV:12510084-12510164 9.98e-01 80 chrI:10469112-10469192 4.59e-03 42_[+1(3.87e-05)]_1_[+3(2.78e-05)]_\ 21 chrV:19733913-19733993 7.08e-01 80 chrV:19371892-19371972 5.04e-02 26_[+2(4.29e-05)]_46 chrV:17928236-17928316 6.60e-01 80 chrV:19752867-19752947 4.59e-01 80 chrI:12061745-12061825 5.14e-01 80 chrIII:3476420-3476500 3.91e-01 80 chrI:4976349-4976429 4.84e-01 80 chrIII:10123672-10123752 1.75e-01 80 chrII:12042396-12042476 4.16e-01 80 chrV:16553127-16553207 4.48e-01 80 chrV:19555457-19555537 9.40e-01 80 chrV:17142779-17142859 2.96e-01 80 chrV:19829302-19829382 9.96e-01 80 chrI:1415949-1416029 3.96e-02 5_[+2(1.44e-05)]_67 chrV:20001145-20001225 5.97e-01 80 chrII:5836539-5836619 1.98e-01 80 chrV:1197364-1197444 1.72e-03 9_[+5(1.75e-05)]_[+1(3.87e-05)]_55 chrV:19358131-19358211 2.39e-02 80 chrV:18873989-18874069 4.52e-02 80 chrX:13590728-13590808 5.23e-01 80 chrV:20241538-20241618 9.93e-01 80 chrV:18677542-18677622 2.92e-01 45_[+2(5.71e-05)]_27 chrV:9625799-9625879 9.71e-01 80 chrV:18447059-18447139 1.26e-01 28_[+3(8.40e-05)]_44 chrI:1823110-1823190 1.29e-01 80 chrII:14528448-14528528 4.02e-02 8_[+3(5.50e-05)]_32_[+3(8.40e-05)]_\ 24 chrIV:10869044-10869124 7.76e-01 80 chrX:8163722-8163802 9.47e-01 80 chrI:2487854-2487934 6.92e-01 80 chrI:2996344-2996424 4.54e-02 80 chrV:17858034-17858114 6.35e-01 80 chrI:8305568-8305648 1.65e-01 46_[+1(9.13e-05)]_26 chrIII:10811129-10811209 1.04e-03 66_[+5(1.75e-05)]_6 chrIV:14032723-14032803 4.31e-02 80 chrIV:8015997-8016077 2.92e-03 48_[+1(3.87e-05)]_1_[+3(2.78e-05)]_\ 15 chrIII:11091816-11091896 2.06e-02 80 chrV:9219304-9219384 2.52e-01 80 chrII:8733547-8733627 6.40e-01 80 chrV:18635093-18635173 5.26e-02 68_[+3(2.78e-05)]_4 chrIV:7402225-7402305 9.47e-01 80 chrI:2996105-2996185 4.55e-03 17_[+5(1.75e-05)]_55 chrI:3516347-3516427 6.92e-04 22_[+3(5.50e-05)]_3_[+1(1.28e-05)]_\ 39 chrIII:6551695-6551775 4.52e-01 80 chrIII:10856962-10857042 8.31e-01 80 chrX:10078256-10078336 3.89e-01 80 chrV:18120192-18120272 4.08e-01 80 chrX:14640153-14640233 4.82e-01 80 chrX:10435592-10435672 2.22e-02 80 chrI:1416148-1416228 1.61e-02 38_[+2(2.88e-05)]_34 chrII:11751735-11751815 6.10e-03 80 chrI:6435899-6435979 1.30e-01 4_[+5(1.75e-05)]_68 chrIV:11857349-11857429 1.89e-01 80 chrIII:10039500-10039580 2.40e-01 80 chrII:8358587-8358667 8.46e-01 80 chrV:10717010-10717090 9.52e-01 80 chrV:18734127-18734207 9.34e-01 80 chrIV:410645-410725 1.02e-01 80 chrII:12348856-12348936 1.00e+00 80 chrIII:6537341-6537421 6.18e-03 31_[+2(1.44e-05)]_41 chrV:1003915-1003995 1.42e-01 68_[+5(5.24e-05)]_4 chrX:2456192-2456272 2.16e-01 80 chrV:18389985-18390065 9.04e-01 80 chrIII:668409-668489 9.59e-01 80 chrII:2748397-2748477 1.09e-06 32_[+2(1.44e-05)]_40 chrIII:4568709-4568789 2.09e-01 80 chrV:11449707-11449787 1.00e+00 80 chrI:5176382-5176462 1.83e-03 23_[+5(5.24e-05)]_4_[+1(3.87e-05)]_\ 37 chrIII:11119443-11119523 8.80e-04 80 chrX:14841115-14841195 3.92e-04 9_[+3(5.50e-05)]_4_[+1(3.87e-05)]_\ 51 chrV:4151657-4151737 1.00e+00 80 chrV:13715450-13715530 2.16e-01 80 chrIV:7619517-7619597 9.42e-01 80 chrX:16147905-16147985 9.89e-02 80 chrX:1018789-1018869 2.85e-01 80 chrV:14325141-14325221 1.58e-01 80 chrIII:8417363-8417443 9.55e-01 80 chrV:19212723-19212803 1.92e-01 80 chrI:5316291-5316371 2.69e-01 80 chrI:2659562-2659642 5.42e-03 [+1(1.28e-05)]_11_[+1(9.13e-05)]_53 chrV:18981159-18981239 2.35e-01 80 chrIV:1745706-1745786 3.81e-02 80 chrII:14063243-14063323 5.73e-01 80 chrIV:14371763-14371843 4.35e-01 80 chrIV:7654524-7654604 3.00e-02 11_[+3(2.78e-05)]_61 chrI:27071-27151 1.43e-01 80 chrV:19723097-19723177 5.11e-01 80 chrIV:11026116-11026196 8.10e-01 80 chrX:14560262-14560342 3.42e-02 60_[+2(1.44e-05)]_12 chrIV:17087574-17087654 3.87e-01 80 chrV:12465509-12465589 1.22e-02 80 chrI:13421148-13421228 3.74e-01 80 chrI:7251575-7251655 5.96e-02 9_[+3(2.78e-05)]_63 chrX:9637881-9637961 3.04e-01 80 chrI:9854092-9854172 1.02e-02 4_[+1(9.13e-05)]_4_[+1(3.87e-05)]_\ 56 chrI:1958552-1958632 3.97e-02 49_[+1(3.87e-05)]_23 chrX:2802574-2802654 5.07e-01 80 chrX:12692046-12692126 9.76e-02 34_[+4(1.54e-05)]_38 chrV:17749305-17749385 2.28e-03 60_[+1(3.87e-05)]_12 chrV:12780416-12780496 9.09e-01 80 chrI:4674001-4674081 5.13e-02 37_[+1(9.13e-05)]_1_[+1(9.13e-05)]_\ 26 chrIV:4042404-4042484 2.40e-02 31_[+5(5.24e-05)]_41 chrX:949659-949739 1.17e-01 80 chrX:1302410-1302490 9.61e-01 80 chrII:11157779-11157859 3.29e-03 2_[+3(2.78e-05)]_[+3(5.50e-05)]_62 chrIII:11317232-11317312 6.20e-02 80 chrX:13598249-13598329 8.40e-01 80 chrV:7465665-7465745 8.81e-01 80 chrX:5592040-5592120 7.33e-01 80 chrI:7711771-7711851 1.13e-01 72_[+1(9.13e-05)] chrII:9566271-9566351 8.26e-01 80 chrI:7772669-7772749 6.88e-01 80 chrX:1858778-1858858 5.64e-01 80 chrII:9940653-9940733 7.29e-02 44_[+5(1.75e-05)]_28 chrII:10248513-10248593 8.01e-03 64_[+2(5.71e-05)]_8 chrIII:12558213-12558293 5.09e-01 80 chrX:12563763-12563843 1.08e-01 32_[+4(1.54e-05)]_40 chrIV:9191345-9191425 9.66e-01 80 chrIII:640589-640669 7.87e-01 80 chrV:8862-8942 2.55e-02 40_[+2(1.44e-05)]_32 chrII:8107266-8107346 4.14e-01 80 chrII:14154512-14154592 1.74e-01 80 chrIII:13068412-13068492 5.45e-01 80 chrX:10146742-10146822 8.55e-01 80 chrII:12494743-12494823 1.32e-01 5_[+4(1.54e-05)]_67 chrI:5807463-5807543 1.76e-01 80 chrI:10026034-10026114 4.05e-03 71_[+3(2.78e-05)]_1 chrIII:5555070-5555150 7.40e-03 17_[+3(5.50e-05)]_55 chrIII:10461284-10461364 5.73e-01 80 chrI:9988918-9988998 1.17e-02 51_[+2(1.44e-05)]_21 chrIII:5172627-5172707 1.44e-01 80 chrIII:5014057-5014137 1.78e-02 33_[+2(1.44e-05)]_39 chrII:13976380-13976460 2.44e-01 80 chrV:19643192-19643272 9.31e-01 80 chrX:5729145-5729225 2.81e-01 80 chrX:6292295-6292375 1.96e-03 70_[+2(1.44e-05)]_2 chrV:17951399-17951479 6.27e-02 80 chrII:14143978-14144058 1.36e-02 13_[+1(9.13e-05)]_51_[+3(8.40e-05)] chrIV:796726-796806 7.30e-02 80 chrX:16446084-16446164 1.92e-01 80 chrX:3697757-3697837 1.49e-01 6_[+4(3.04e-05)]_66 chrX:2852549-2852629 3.09e-01 80 chrIII:4223725-4223805 5.55e-02 72_[+2(1.44e-05)] chrIV:9477704-9477784 6.92e-01 80 chrII:11967685-11967765 1.89e-01 80 chrX:17505998-17506078 6.78e-02 28_[+2(2.88e-05)]_44 chrX:12106161-12106241 9.86e-01 80 chrI:1435622-1435702 5.56e-02 80 chrI:8259523-8259603 8.72e-01 80 chrX:6593527-6593607 2.82e-01 80 chrX:6903127-6903207 7.00e-01 80 chrV:13003582-13003662 1.16e-03 64_[+2(1.44e-05)]_8 chrI:12198621-12198701 8.08e-01 80 chrX:9958781-9958861 1.43e-02 18_[+1(6.49e-05)]_54 chrIII:1424479-1424559 9.51e-01 80 chrI:9267041-9267121 2.23e-01 80 chrX:5812225-5812305 9.51e-01 80 chrI:9722141-9722221 3.30e-02 80 chrI:14113235-14113315 8.54e-02 34_[+3(5.50e-05)]_38 chrV:9970305-9970385 1.46e-02 80 chrIV:8252993-8253073 2.14e-02 14_[+1(9.13e-05)]_58 chrX:15354085-15354165 1.82e-01 34_[+1(9.13e-05)]_38 chrIII:9668041-9668121 9.34e-01 80 chrX:15742018-15742098 9.44e-01 80 chrII:7184037-7184117 8.06e-01 80 chrV:6267564-6267644 3.00e-01 80 chrIII:8678510-8678590 6.39e-01 80 chrI:10642442-10642522 2.99e-01 80 chrIII:11371429-11371509 2.25e-01 80 chrIII:5305874-5305954 1.41e-02 38_[+4(1.54e-05)]_34 chrI:6564581-6564661 7.46e-03 69_[+1(3.87e-05)]_3 chrV:15873942-15874022 9.84e-01 80 chrIII:4171139-4171219 3.35e-01 80 chrX:489887-489967 1.16e-01 80 chrI:13331119-13331199 1.67e-02 12_[+1(1.28e-05)]_60 chrIII:1418856-1418936 3.59e-01 80 chrV:8001126-8001206 3.06e-02 80 chrII:11534736-11534816 2.78e-03 18_[+5(1.75e-05)]_54 chrV:19126023-19126103 9.86e-02 28_[+4(1.54e-05)]_44 chrIV:390462-390542 7.22e-02 80 chrV:15002326-15002406 3.95e-01 80 chrX:13145337-13145417 4.49e-01 80 chrII:11484732-11484812 5.57e-01 80 chrIV:12594682-12594762 1.87e-02 65_[+4(1.54e-05)]_7 chrIV:10252557-10252637 5.95e-02 8_[+5(1.75e-05)]_64 chrII:8547135-8547215 9.92e-01 80 chrV:1871911-1871991 2.89e-01 80 chrV:15551793-15551873 4.61e-01 80 chrII:14795131-14795211 7.50e-01 80 chrX:2227115-2227195 2.19e-03 55_[+1(1.28e-05)]_17 chrX:14115686-14115766 1.00e+00 80 chrIII:8043915-8043995 2.03e-01 49_[+5(8.69e-05)]_23 chrIV:385507-385587 1.42e-01 80 chrIV:7574032-7574112 2.80e-01 80 chrX:10132705-10132785 3.43e-01 80 chrII:11453162-11453242 1.74e-02 11_[+2(4.29e-05)]_61 chrX:11031358-11031438 1.68e-01 80 chrX:10188570-10188650 6.68e-01 80 chrX:5085659-5085739 6.27e-01 80 chrV:13468347-13468427 9.03e-01 80 chrV:53489-53569 3.10e-01 80 chrX:14015907-14015987 7.72e-01 80 chrX:9467719-9467799 4.69e-01 80 chrII:11960764-11960844 6.14e-01 80 chrIV:8927183-8927263 5.12e-02 25_[+4(3.04e-05)]_47 chrII:255271-255351 1.87e-02 80 chrX:13306998-13307078 9.98e-01 80 chrII:5105240-5105320 1.18e-02 68_[+1(3.87e-05)]_4 chrX:6207799-6207879 9.05e-01 80 chrI:5706971-5707051 8.05e-01 80 chrI:6082808-6082888 2.70e-01 80 chrIII:502703-502783 3.40e-01 80 chrII:10502838-10502918 8.58e-01 80 chrIV:14033838-14033918 4.18e-01 80 chrII:8028419-8028499 4.67e-01 80 chrII:5782036-5782116 4.17e-02 80 chrX:14063968-14064048 3.65e-01 80 chrI:6781798-6781878 1.06e-01 12_[+4(1.54e-05)]_60 chrV:10808066-10808146 9.11e-01 80 chrX:7823135-7823215 3.16e-02 35_[+3(2.78e-05)]_37 chrX:353291-353371 7.36e-02 48_[+5(1.75e-05)]_24 chrX:11606180-11606260 2.21e-01 80 chrIV:4660546-4660626 1.73e-02 59_[+3(8.40e-05)]_13 chrIV:11474227-11474307 1.48e-01 80 chrX:10963820-10963900 9.19e-01 80 chrIII:2768856-2768936 1.30e-03 30_[+1(3.87e-05)]_13_[+1(1.28e-05)]_\ 21 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n12.farnam.hpc.yale.internal ********************************************************************************