******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/worm/fasta/RankLinear2.0_40/odd-2.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrII:4521018-4521098 1.0000 80 chrM:13599-13679 1.0000 80 chrM:13145-13225 1.0000 80 chrM:509-589 1.0000 80 chrM:6589-6669 1.0000 80 chrM:4021-4101 1.0000 80 chrM:10474-10554 1.0000 80 chrM:2642-2722 1.0000 80 chrII:4521877-4521957 1.0000 80 chrII:4522117-4522197 1.0000 80 chrM:5563-5643 1.0000 80 chrM:7595-7675 1.0000 80 chrM:9672-9752 1.0000 80 chrM:11640-11720 1.0000 80 chrM:5768-5848 1.0000 80 chrM:11439-11519 1.0000 80 chrIV:10351072-10351152 1.0000 80 chrM:12286-12366 1.0000 80 chrM:6895-6975 1.0000 80 chrII:5399413-5399493 1.0000 80 chrM:1334-1414 1.0000 80 chrV:3587821-3587901 1.0000 80 chrII:4521227-4521307 1.0000 80 chrV:18722701-18722781 1.0000 80 chrV:7231017-7231097 1.0000 80 chrIII:3664402-3664482 1.0000 80 chrI:14606031-14606111 1.0000 80 chrIII:13325587-13325667 1.0000 80 chrIII:13779075-13779155 1.0000 80 chrV:9583092-9583172 1.0000 80 chrM:3589-3669 1.0000 80 chrX:15377874-15377954 1.0000 80 chrM:7794-7874 1.0000 80 chrI:3873906-3873986 1.0000 80 chrIII:13560237-13560317 1.0000 80 chrX:6166276-6166356 1.0000 80 chrX:9296725-9296805 1.0000 80 chrX:7780776-7780856 1.0000 80 chrII:4238055-4238135 1.0000 80 chrIII:3175130-3175210 1.0000 80 chrM:2230-2310 1.0000 80 chrX:8156157-8156237 1.0000 80 chrII:7708736-7708816 1.0000 80 chrM:4751-4831 1.0000 80 chrM:9269-9349 1.0000 80 chrX:6145165-6145245 1.0000 80 chrIII:3916747-3916827 1.0000 80 chrI:1175816-1175896 1.0000 80 chrIII:1824674-1824754 1.0000 80 chrI:4633635-4633715 1.0000 80 chrV:13176443-13176523 1.0000 80 chrIII:4805509-4805589 1.0000 80 chrV:4731530-4731610 1.0000 80 chrV:13962148-13962228 1.0000 80 chrX:16997153-16997233 1.0000 80 chrV:11239324-11239404 1.0000 80 chrI:14721602-14721682 1.0000 80 chrX:14115659-14115739 1.0000 80 chrI:14708072-14708152 1.0000 80 chrX:7985843-7985923 1.0000 80 chrIII:8768032-8768112 1.0000 80 chrX:6167974-6168054 1.0000 80 chrIII:9664653-9664733 1.0000 80 chrIII:11997784-11997864 1.0000 80 chrX:3772586-3772666 1.0000 80 chrX:6164792-6164872 1.0000 80 chrIII:6961279-6961359 1.0000 80 chrII:10991254-10991334 1.0000 80 chrM:1093-1173 1.0000 80 chrIV:16505892-16505972 1.0000 80 chrI:10435828-10435908 1.0000 80 chrIII:10432249-10432329 1.0000 80 chrIII:4568708-4568788 1.0000 80 chrII:7255852-7255932 1.0000 80 chrIV:9316202-9316282 1.0000 80 chrIV:620492-620572 1.0000 80 chrII:6847958-6848038 1.0000 80 chrI:1444157-1444237 1.0000 80 chrII:7810765-7810845 1.0000 80 chrX:13653760-13653840 1.0000 80 chrIII:4171148-4171228 1.0000 80 chrIII:1617110-1617190 1.0000 80 chrV:11113307-11113387 1.0000 80 chrV:12780368-12780448 1.0000 80 chrV:1821480-1821560 1.0000 80 chrV:6227422-6227502 1.0000 80 chrI:9249408-9249488 1.0000 80 chrIV:16863574-16863654 1.0000 80 chrIV:14013767-14013847 1.0000 80 chrIII:5555084-5555164 1.0000 80 chrI:1958493-1958573 1.0000 80 chrI:11505503-11505583 1.0000 80 chrX:6286325-6286405 1.0000 80 chrX:4789076-4789156 1.0000 80 chrM:10921-11001 1.0000 80 chrIV:3233045-3233125 1.0000 80 chrI:14737431-14737511 1.0000 80 chrIV:3552203-3552283 1.0000 80 chrIII:1601554-1601634 1.0000 80 chrIII:9629902-9629982 1.0000 80 chrV:18723646-18723726 1.0000 80 chrIV:16400934-16401014 1.0000 80 chrX:17181355-17181435 1.0000 80 chrIV:11026053-11026133 1.0000 80 chrV:11610636-11610716 1.0000 80 chrX:16604679-16604759 1.0000 80 chrIV:11310730-11310810 1.0000 80 chrIII:8106587-8106667 1.0000 80 chrI:4132312-4132392 1.0000 80 chrV:6785279-6785359 1.0000 80 chrI:6532040-6532120 1.0000 80 chrIII:10624799-10624879 1.0000 80 chrX:8971466-8971546 1.0000 80 chrIV:9477753-9477833 1.0000 80 chrIV:9191389-9191469 1.0000 80 chrX:13511952-13512032 1.0000 80 chrIII:9861633-9861713 1.0000 80 chrV:8631370-8631450 1.0000 80 chrX:16928264-16928344 1.0000 80 chrX:12563806-12563886 1.0000 80 chrV:12291747-12291827 1.0000 80 chrX:1880820-1880900 1.0000 80 chrIV:11692323-11692403 1.0000 80 chrIII:13268985-13269065 1.0000 80 chrV:53435-53515 1.0000 80 chrIII:1080623-1080703 1.0000 80 chrIII:2768802-2768882 1.0000 80 chrX:13121282-13121362 1.0000 80 chrII:12798828-12798908 1.0000 80 chrIV:143999-144079 1.0000 80 chrII:5292262-5292342 1.0000 80 chrI:5986276-5986356 1.0000 80 chrV:12596906-12596986 1.0000 80 chrX:12171870-12171950 1.0000 80 chrIII:5295068-5295148 1.0000 80 chrX:15297399-15297479 1.0000 80 chrIV:13386228-13386308 1.0000 80 chrV:15551767-15551847 1.0000 80 chrIII:10461274-10461354 1.0000 80 chrI:14113245-14113325 1.0000 80 chrX:10132773-10132853 1.0000 80 chrIII:5014258-5014338 1.0000 80 chrIII:8678501-8678581 1.0000 80 chrIII:8937676-8937756 1.0000 80 chrX:10963807-10963887 1.0000 80 chrIV:8252999-8253079 1.0000 80 chrIV:16398256-16398336 1.0000 80 chrIV:8375568-8375648 1.0000 80 chrIII:4470865-4470945 1.0000 80 chrV:7060387-7060467 1.0000 80 chrX:9467655-9467735 1.0000 80 chrII:12494743-12494823 1.0000 80 chrII:7184083-7184163 1.0000 80 chrI:4297991-4298071 1.0000 80 chrII:6047695-6047775 1.0000 80 chrV:19643192-19643272 1.0000 80 chrIV:11549839-11549919 1.0000 80 chrX:5707997-5708077 1.0000 80 chrX:6593587-6593667 1.0000 80 chrIII:6158724-6158804 1.0000 80 chrI:8259554-8259634 1.0000 80 chrX:489893-489973 1.0000 80 chrIII:5602195-5602275 1.0000 80 chrIII:12874906-12874986 1.0000 80 chrII:11484749-11484829 1.0000 80 chrV:15873974-15874054 1.0000 80 chrIII:11371440-11371520 1.0000 80 chrIV:6556774-6556854 1.0000 80 chrIV:7039571-7039651 1.0000 80 chrII:8547191-8547271 1.0000 80 chrX:12661087-12661167 1.0000 80 chrII:5105196-5105276 1.0000 80 chrX:2227185-2227265 1.0000 80 chrIII:8109625-8109705 1.0000 80 chrX:9637903-9637983 1.0000 80 chrV:6889063-6889143 1.0000 80 chrI:9267065-9267145 1.0000 80 chrIV:390435-390515 1.0000 80 chrII:6853149-6853229 1.0000 80 chrIV:6756639-6756719 1.0000 80 chrIV:2408523-2408603 1.0000 80 chrII:10840232-10840312 1.0000 80 chrV:9503482-9503562 1.0000 80 chrX:11757908-11757988 1.0000 80 chrX:15742035-15742115 1.0000 80 chrII:5032797-5032877 1.0000 80 chrX:2549482-2549562 1.0000 80 chrX:6292255-6292335 1.0000 80 chrIV:14034049-14034129 1.0000 80 chrX:16591010-16591090 1.0000 80 chrX:12458199-12458279 1.0000 80 chrX:13306990-13307070 1.0000 80 chrX:3970151-3970231 1.0000 80 chrX:16634759-16634839 1.0000 80 chrI:12198642-12198722 1.0000 80 chrX:12106160-12106240 1.0000 80 chrI:6781827-6781907 1.0000 80 chrV:11314172-11314252 1.0000 80 chrX:2613258-2613338 1.0000 80 chrII:11960798-11960878 1.0000 80 chrX:12665269-12665349 1.0000 80 chrI:6082774-6082854 1.0000 80 chrI:2514331-2514411 1.0000 80 chrV:12303597-12303677 1.0000 80 chrII:3519120-3519200 1.0000 80 chrIV:7574028-7574108 1.0000 80 chrX:9743628-9743708 1.0000 80 chrV:12002016-12002096 1.0000 80 chrX:3697639-3697719 1.0000 80 chrI:5706920-5707000 1.0000 80 chrX:5085601-5085681 1.0000 80 chrX:13665605-13665685 1.0000 80 chrX:11605871-11605951 1.0000 80 chrII:13834532-13834612 1.0000 80 chrX:6207773-6207853 1.0000 80 chrV:8500537-8500617 1.0000 80 chrV:9970286-9970366 1.0000 80 chrV:10808033-10808113 1.0000 80 chrIV:1659161-1659241 1.0000 80 chrIII:6972029-6972109 1.0000 80 chrII:8075508-8075588 1.0000 80 chrX:14063963-14064043 1.0000 80 chrII:5782067-5782147 1.0000 80 chrIV:8927200-8927280 1.0000 80 chrII:14497011-14497091 1.0000 80 chrV:13003516-13003596 1.0000 80 chrX:8836149-8836229 1.0000 80 chrX:8404472-8404552 1.0000 80 chrI:6105813-6105893 1.0000 80 chrIV:11474247-11474327 1.0000 80 chrII:15166008-15166088 1.0000 80 chrX:1379648-1379728 1.0000 80 chrV:11782886-11782966 1.0000 80 chrII:8561449-8561529 1.0000 80 chrII:14804624-14804704 1.0000 80 chrX:14525789-14525869 1.0000 80 chrIII:13062492-13062572 1.0000 80 chrI:8224387-8224467 1.0000 80 chrIV:17278530-17278610 1.0000 80 chrX:9465883-9465963 1.0000 80 chrX:3036185-3036265 1.0000 80 chrX:5429501-5429581 1.0000 80 chrI:1446960-1447040 1.0000 80 chrIV:5967197-5967277 1.0000 80 chrI:6212781-6212861 1.0000 80 chrX:13046440-13046520 1.0000 80 chrII:1320538-1320618 1.0000 80 chrI:4172209-4172289 1.0000 80 chrII:255295-255375 1.0000 80 chrX:410356-410436 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/worm/inference_raw/MEME/RankLinear2.0_40_odd-2/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/worm/fasta/RankLinear2.0_40/odd-2.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.27 C 0.223 G 0.228 T 0.279 Background letter frequencies (from file dataset with add-one prior applied): A 0.27 C 0.223 G 0.228 T 0.279 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF SCGYGCGG MEME-1 width = 8 sites = 70 llr = 532 E-value = 6.3e-019 ******************************************************************************** -------------------------------------------------------------------------------- Motif SCGYGCGG MEME-1 Description -------------------------------------------------------------------------------- Simplified A :::2:::: pos.-specific C 57:5:7:3 probability G 5:a1a:a7 matrix T :3:3:3:: bits 2.2 * * 1.9 * * * 1.7 * * * 1.5 * * * Relative 1.3 * **** Entropy 1.1 *** **** (11.0 bits) 0.9 *** **** 0.6 *** **** 0.4 *** **** 0.2 ******** 0.0 -------- Multilevel GCGCGCGG consensus CT T T C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCGYGCGG MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIII:10461274-10461354 23 6.83e-06 TGTGTAAAAT GCGCGCGG CACACTTGCG chrIII:4171148-4171228 16 6.83e-06 AATGTCATCT GCGCGCGG CATATCTGCA chrI:14721602-14721682 21 6.83e-06 TGCAATGCGC GCGCGCGG TTTTCGCAAT chrV:13962148-13962228 58 6.83e-06 TGCATAAACT GCGCGCGG CAACTGCAAA chrIV:390435-390515 64 1.35e-05 tcgcaatgcg ccgcgcgg cttttcgca chrV:9970286-9970366 29 2.87e-05 CAAGAACGAC GCGCGCGC CTCTTCCCCA chrV:12303597-12303677 28 2.87e-05 AGGCGGGTGT GCGCGCGC TTGTCGTTCA chrII:7184083-7184163 31 2.87e-05 TCCCCCCAAT GCGCGCGC ACATCCACTG chrIII:5555084-5555164 53 2.87e-05 TGCGCAAAAA GCGCGCGC ACATTGCGTT chrI:1444157-1444237 35 2.87e-05 TTTGCAACCA GCGCGCGC ACTTTTCGCA chrV:4731530-4731610 72 2.87e-05 GCAAAAACGC GCGCGCGC A chrII:7708736-7708816 18 2.87e-05 ACAATGCAAT GCGCGCGC ACGGTTTTTG chrII:4238055-4238135 46 2.87e-05 TTGCGAAAAT GCGTGCGG CGCGTTGCAA chrI:4132312-4132392 22 4.36e-05 CCCACTTTAA CCGTGCGG CGTGCAGCGT chrIV:9316202-9316282 18 4.36e-05 ATGAATAAAA CCGTGCGG CGGAATTGCG chrIII:1824674-1824754 25 4.36e-05 AAACTAAACC CCGTGCGG CGCTCTTGCA chrI:1175816-1175896 38 4.36e-05 AACATAAACT CCGTGCGG CACACTTGCA chrIII:3664402-3664482 19 4.36e-05 TTGCAACACG CCGCGCGC ATTTCGCAAC chrIV:11310730-11310810 63 5.22e-05 AAGAGGAAAA GTGCGCGG CGGGCTTGCA chrV:11610636-11610716 23 5.22e-05 TGCAAAAAAT GTGCGCGG GGGTTGCAGC chrV:11239324-11239404 44 5.22e-05 CACGCAACCA GTGCGCGG GTTTTTTGCA chrI:14606031-14606111 26 5.22e-05 AGCTGGAAAA GTGCGCGG CAGACTTGCA chrII:11960798-11960878 47 6.06e-05 CGGGTAGCGG CTGCGCGG CCGTGAAACA chrI:6082774-6082854 51 7.74e-05 CTCGGGAGCG GCGAGCGG CAGCCGGCCG chrII:5105196-5105276 35 7.74e-05 CTCCTCGACT GCGAGCGG GTTGAACTAA chrI:9267065-9267145 59 9.38e-05 AATTTCGTGG CCGCGTGG CCTAATGGAT chrX:13121282-13121362 9 9.38e-05 cgggccgc ccgcgtgg caggcgagca chrX:16928264-16928344 37 9.38e-05 cccgggccgc ccgcgtgg caggcgagca chrI:14113245-14113325 13 1.02e-04 TTGCAAAATT GCGTGCGC CACTTGCAAA chrI:4633635-4633715 32 1.02e-04 AGCATCAATT GCGTGCGC CGTTTTTGCA chrI:2514331-2514411 34 1.10e-04 GGTGCGACCA CCGTGCGC ATCATGGCAG chrIV:17278530-17278610 45 1.29e-04 TCAAAATGTG GTGCGCGC TCTCTCTCCC chrIV:6756639-6756719 13 1.29e-04 GAGAAAAAAA GTGTGCGG GGGCATTGCG chrIV:13386228-13386308 5 1.29e-04 ACAA GTGTGCGG CGTTGTTGCA chrI:1958493-1958573 51 1.29e-04 AACGGGAATT GTGTGCGG CGGTGTTGCG chrIII:3916747-3916827 61 1.29e-04 AACCTAAAGT GTGTGCGG CGACTTTGCA chrIII:13268985-13269065 20 1.48e-04 CTTGCGAAAA CTGCGCGC CCGCATTGCA chrIII:8768032-8768112 49 1.48e-04 ACTGAGTAAA CTGTGCGG CGTGTTTGCG chrIII:3175130-3175210 29 1.48e-04 GCTCTTAACT CTGTGCGG CACCATTGCG chrV:8500537-8500617 38 1.75e-04 CGACGCTTTG GCGAGCGC AATGAATGTT chrX:6292255-6292335 65 1.75e-04 CGCATGCAAA GCGAGCGC TCTACCCC chrV:19643192-19643272 25 1.75e-04 TGGGCGGCAG GCGAGCGC GTTAGCCACT chrX:2613258-2613338 22 2.09e-04 cgcctgccac gcgggcgg cccgggttcg chrX:14115659-14115739 34 2.09e-04 ACTTTCGTGG CCGTGTGG CCTAATGGAT chrX:13665605-13665685 40 2.37e-04 ACTCGTATGG GTGCGTGG GTTCGAATCC chrX:12106160-12106240 54 2.37e-04 ACTGAGCTAA CCGGGCGG CAATGGCATT chrIII:8109625-8109705 71 2.37e-04 ACTCGTATGG GTGCGTGG GT chrIII:8678501-8678581 2 2.57e-04 A CTGAGCGG ATCGAACGCC chrX:12563806-12563886 41 2.57e-04 TAGTTCAATC CTGCGTGG GGGCAATTTC chrX:13653760-13653840 27 2.57e-04 TAGTTCAATC CTGCGTGG GGGCAAGTCT chrI:5706920-5707000 73 2.88e-04 GCGTTGCTGG CCGAGTGG chrX:15742035-15742115 25 2.88e-04 GCCGTTCTGG CCGAGTGG TCTAAGGCGC chrII:10840232-10840312 41 2.88e-04 TGGTTAGCAT GTGTGCGC TGTGTGCAAT chrII:6853149-6853229 65 2.88e-04 GGTGAGATGG CCGAGTGG TCTAAGGC chrIV:6556774-6556854 54 2.88e-04 GCCGTTCTGG CCGAGTGG TCTAAGGCGC chrIII:6158724-6158804 64 2.88e-04 GCAGTCATGT CCGAGTGG TTAAGGAGA chrX:5707997-5708077 41 2.88e-04 GATCAGGTGG CCGAGTGG TTAAGGCGAT chrV:53435-53515 51 2.88e-04 tttcgcatgg ccgagtgg ttagtacgta chrI:14737431-14737511 58 2.88e-04 TTTGCAAAAT GTGTGCGC ACCACTTGCG chrII:11484749-11484829 38 3.26e-04 CGGTTGAGTG GCGGGCGC ACGCGCACAC chrIV:7039571-7039651 27 4.09e-04 TCGCGTGGAA CTGTGTGG GAGGAGTCAA chrIII:9861633-9861713 52 4.09e-04 TCGGACATGA CTGCGTGC CGAATACTCG chrI:4297991-4298071 30 4.54e-04 GGGCACCGGG GCGGGTGG GCGACAATCG chrIII:4568708-4568788 14 4.54e-04 AATGAAAATG TCGCGCGG CGGAATTGCG chrX:2549482-2549562 51 4.76e-04 AATTTCGCTC CCGGGTGG GCTCGAACCA chrX:8836149-8836229 2 5.04e-04 C CCACGCGG CCCGGGTTCG chrX:12661087-12661167 25 5.39e-04 CTCTTCCACA CTGTGTGC GTTCCGCAGC chrI:3873906-3873986 34 5.74e-04 ACCATGACTT TCgtgcgg cgagattgcg chrII:255295-255375 68 6.47e-04 TCGGCAAGCG GCACGCGC AGTTT chrI:8259554-8259634 6 6.76e-04 CTAGA CCACGCGC GCATAGCATT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCGYGCGG MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:10461274-10461354 6.8e-06 22_[+1]_50 chrIII:4171148-4171228 6.8e-06 15_[+1]_57 chrI:14721602-14721682 6.8e-06 20_[+1]_52 chrV:13962148-13962228 6.8e-06 57_[+1]_15 chrIV:390435-390515 1.4e-05 63_[+1]_9 chrV:9970286-9970366 2.9e-05 28_[+1]_44 chrV:12303597-12303677 2.9e-05 27_[+1]_45 chrII:7184083-7184163 2.9e-05 30_[+1]_42 chrIII:5555084-5555164 2.9e-05 52_[+1]_20 chrI:1444157-1444237 2.9e-05 34_[+1]_38 chrV:4731530-4731610 2.9e-05 71_[+1]_1 chrII:7708736-7708816 2.9e-05 17_[+1]_55 chrII:4238055-4238135 2.9e-05 45_[+1]_27 chrI:4132312-4132392 4.4e-05 21_[+1]_51 chrIV:9316202-9316282 4.4e-05 17_[+1]_55 chrIII:1824674-1824754 4.4e-05 24_[+1]_48 chrI:1175816-1175896 4.4e-05 37_[+1]_35 chrIII:3664402-3664482 4.4e-05 18_[+1]_54 chrIV:11310730-11310810 5.2e-05 62_[+1]_10 chrV:11610636-11610716 5.2e-05 22_[+1]_50 chrV:11239324-11239404 5.2e-05 43_[+1]_29 chrI:14606031-14606111 5.2e-05 25_[+1]_47 chrII:11960798-11960878 6.1e-05 46_[+1]_26 chrI:6082774-6082854 7.7e-05 50_[+1]_22 chrII:5105196-5105276 7.7e-05 34_[+1]_38 chrI:9267065-9267145 9.4e-05 58_[+1]_14 chrX:13121282-13121362 9.4e-05 8_[+1]_64 chrX:16928264-16928344 9.4e-05 36_[+1]_36 chrI:14113245-14113325 0.0001 12_[+1]_60 chrI:4633635-4633715 0.0001 31_[+1]_41 chrI:2514331-2514411 0.00011 33_[+1]_39 chrIV:17278530-17278610 0.00013 44_[+1]_28 chrIV:6756639-6756719 0.00013 12_[+1]_60 chrIV:13386228-13386308 0.00013 4_[+1]_68 chrI:1958493-1958573 0.00013 50_[+1]_22 chrIII:3916747-3916827 0.00013 60_[+1]_12 chrIII:13268985-13269065 0.00015 19_[+1]_53 chrIII:8768032-8768112 0.00015 48_[+1]_24 chrIII:3175130-3175210 0.00015 28_[+1]_44 chrV:8500537-8500617 0.00018 37_[+1]_35 chrX:6292255-6292335 0.00018 64_[+1]_8 chrV:19643192-19643272 0.00018 24_[+1]_48 chrX:2613258-2613338 0.00021 21_[+1]_51 chrX:14115659-14115739 0.00021 33_[+1]_39 chrX:13665605-13665685 0.00024 39_[+1]_33 chrX:12106160-12106240 0.00024 53_[+1]_19 chrIII:8109625-8109705 0.00024 70_[+1]_2 chrIII:8678501-8678581 0.00026 1_[+1]_71 chrX:12563806-12563886 0.00026 40_[+1]_32 chrX:13653760-13653840 0.00026 26_[+1]_46 chrI:5706920-5707000 0.00029 72_[+1] chrX:15742035-15742115 0.00029 24_[+1]_48 chrII:10840232-10840312 0.00029 40_[+1]_32 chrII:6853149-6853229 0.00029 64_[+1]_8 chrIV:6556774-6556854 0.00029 53_[+1]_19 chrIII:6158724-6158804 0.00029 63_[+1]_9 chrX:5707997-5708077 0.00029 40_[+1]_32 chrV:53435-53515 0.00029 50_[+1]_22 chrI:14737431-14737511 0.00029 57_[+1]_15 chrII:11484749-11484829 0.00033 37_[+1]_35 chrIV:7039571-7039651 0.00041 26_[+1]_46 chrIII:9861633-9861713 0.00041 51_[+1]_21 chrI:4297991-4298071 0.00045 29_[+1]_43 chrIII:4568708-4568788 0.00045 13_[+1]_59 chrX:2549482-2549562 0.00048 50_[+1]_22 chrX:8836149-8836229 0.0005 1_[+1]_71 chrX:12661087-12661167 0.00054 24_[+1]_48 chrI:3873906-3873986 0.00057 33_[+1]_39 chrII:255295-255375 0.00065 67_[+1]_5 chrI:8259554-8259634 0.00068 5_[+1]_67 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCGYGCGG MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF SCGYGCGG width=8 seqs=70 chrIII:10461274-10461354 ( 23) GCGCGCGG 1 chrIII:4171148-4171228 ( 16) GCGCGCGG 1 chrI:14721602-14721682 ( 21) GCGCGCGG 1 chrV:13962148-13962228 ( 58) GCGCGCGG 1 chrIV:390435-390515 ( 64) CCGCGCGG 1 chrV:9970286-9970366 ( 29) GCGCGCGC 1 chrV:12303597-12303677 ( 28) GCGCGCGC 1 chrII:7184083-7184163 ( 31) GCGCGCGC 1 chrIII:5555084-5555164 ( 53) GCGCGCGC 1 chrI:1444157-1444237 ( 35) GCGCGCGC 1 chrV:4731530-4731610 ( 72) GCGCGCGC 1 chrII:7708736-7708816 ( 18) GCGCGCGC 1 chrII:4238055-4238135 ( 46) GCGTGCGG 1 chrI:4132312-4132392 ( 22) CCGTGCGG 1 chrIV:9316202-9316282 ( 18) CCGTGCGG 1 chrIII:1824674-1824754 ( 25) CCGTGCGG 1 chrI:1175816-1175896 ( 38) CCGTGCGG 1 chrIII:3664402-3664482 ( 19) CCGCGCGC 1 chrIV:11310730-11310810 ( 63) GTGCGCGG 1 chrV:11610636-11610716 ( 23) GTGCGCGG 1 chrV:11239324-11239404 ( 44) GTGCGCGG 1 chrI:14606031-14606111 ( 26) GTGCGCGG 1 chrII:11960798-11960878 ( 47) CTGCGCGG 1 chrI:6082774-6082854 ( 51) GCGAGCGG 1 chrII:5105196-5105276 ( 35) GCGAGCGG 1 chrI:9267065-9267145 ( 59) CCGCGTGG 1 chrX:13121282-13121362 ( 9) CCGCGTGG 1 chrX:16928264-16928344 ( 37) CCGCGTGG 1 chrI:14113245-14113325 ( 13) GCGTGCGC 1 chrI:4633635-4633715 ( 32) GCGTGCGC 1 chrI:2514331-2514411 ( 34) CCGTGCGC 1 chrIV:17278530-17278610 ( 45) GTGCGCGC 1 chrIV:6756639-6756719 ( 13) GTGTGCGG 1 chrIV:13386228-13386308 ( 5) GTGTGCGG 1 chrI:1958493-1958573 ( 51) GTGTGCGG 1 chrIII:3916747-3916827 ( 61) GTGTGCGG 1 chrIII:13268985-13269065 ( 20) CTGCGCGC 1 chrIII:8768032-8768112 ( 49) CTGTGCGG 1 chrIII:3175130-3175210 ( 29) CTGTGCGG 1 chrV:8500537-8500617 ( 38) GCGAGCGC 1 chrX:6292255-6292335 ( 65) GCGAGCGC 1 chrV:19643192-19643272 ( 25) GCGAGCGC 1 chrX:2613258-2613338 ( 22) GCGGGCGG 1 chrX:14115659-14115739 ( 34) CCGTGTGG 1 chrX:13665605-13665685 ( 40) GTGCGTGG 1 chrX:12106160-12106240 ( 54) CCGGGCGG 1 chrIII:8109625-8109705 ( 71) GTGCGTGG 1 chrIII:8678501-8678581 ( 2) CTGAGCGG 1 chrX:12563806-12563886 ( 41) CTGCGTGG 1 chrX:13653760-13653840 ( 27) CTGCGTGG 1 chrI:5706920-5707000 ( 73) CCGAGTGG 1 chrX:15742035-15742115 ( 25) CCGAGTGG 1 chrII:10840232-10840312 ( 41) GTGTGCGC 1 chrII:6853149-6853229 ( 65) CCGAGTGG 1 chrIV:6556774-6556854 ( 54) CCGAGTGG 1 chrIII:6158724-6158804 ( 64) CCGAGTGG 1 chrX:5707997-5708077 ( 41) CCGAGTGG 1 chrV:53435-53515 ( 51) CCGAGTGG 1 chrI:14737431-14737511 ( 58) GTGTGCGC 1 chrII:11484749-11484829 ( 38) GCGGGCGC 1 chrIV:7039571-7039651 ( 27) CTGTGTGG 1 chrIII:9861633-9861713 ( 52) CTGCGTGC 1 chrI:4297991-4298071 ( 30) GCGGGTGG 1 chrIII:4568708-4568788 ( 14) TCGCGCGG 1 chrX:2549482-2549562 ( 51) CCGGGTGG 1 chrX:8836149-8836229 ( 2) CCACGCGG 1 chrX:12661087-12661167 ( 25) CTGTGTGC 1 chrI:3873906-3873986 ( 34) TCGTGCGG 1 chrII:255295-255375 ( 68) GCACGCGC 1 chrI:8259554-8259634 ( 6) CCACGCGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCGYGCGG MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.8035 E= 6.3e-019 -1277 103 118 -329 -1277 159 -1277 23 -265 -1277 207 -1277 -54 103 -167 3 -1277 -1277 214 -1277 -1277 168 -1277 3 -1277 -1277 214 -1277 -1277 56 156 -1277 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCGYGCGG MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 70 E= 6.3e-019 0.000000 0.457143 0.514286 0.028571 0.000000 0.671429 0.000000 0.328571 0.042857 0.000000 0.957143 0.000000 0.185714 0.457143 0.071429 0.285714 0.000000 0.000000 1.000000 0.000000 0.000000 0.714286 0.000000 0.285714 0.000000 0.000000 1.000000 0.000000 0.000000 0.328571 0.671429 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCGYGCGG MEME-1 regular expression -------------------------------------------------------------------------------- [GC][CT]G[CT]G[CT]G[GC] -------------------------------------------------------------------------------- Time 5.53 secs. ******************************************************************************** ******************************************************************************** MOTIF TTKYRMAA MEME-2 width = 8 sites = 83 llr = 589 E-value = 6.7e-013 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTKYRMAA MEME-2 Description -------------------------------------------------------------------------------- Simplified A ::::35a8 pos.-specific C :::6:5:: probability G ::3:5::: matrix T aa741::2 bits 2.2 1.9 ** * 1.7 ** * 1.5 ** * Relative 1.3 ** * Entropy 1.1 **** *** (10.2 bits) 0.9 **** *** 0.6 **** *** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TTTCGAAA consensus GTAC T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTKYRMAA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIV:7039571-7039651 65 1.80e-05 TGGCACGCGA TTTCGCAA CTCTCTCG chrIV:16863574-16863654 60 1.80e-05 ATTTCGCAAA TTTCGCAA CGGGGCGCGG chrV:11113307-11113387 67 1.80e-05 cggcacgcgt tttcgcaa gtctgc chrI:1444157-1444237 46 1.80e-05 CGCGCGCACT TTTCGCAA CCCCAGCGCA chrII:7255852-7255932 34 1.80e-05 ACAGTCTCCG TTTCGCAA GGACACTCGG chrI:14721602-14721682 30 1.80e-05 CGCGCGCGGT TTTCGCAA TATCGCCGCA chrIII:3664402-3664482 28 1.80e-05 GCCGCGCGCA TTTCGCAA CGCTGCCGCA chrV:3587821-3587901 5 1.80e-05 GCGA TTTCGCAA CTCCGCCGCA chrI:4172209-4172289 38 3.97e-05 AGTTCTGACC TTTCGAAA GAAAGTGTCA chrII:14497011-14497091 70 3.97e-05 ACTCGAGTAC TTTCGAAA TTG chrI:12198642-12198722 39 6.21e-05 GGTCAAATGT TTTTGCAA CACCTCATTA chrII:8547191-8547271 44 6.21e-05 GCGCCGCAAG TTTTGCAA TGACGATGTG chrII:6047695-6047775 73 6.21e-05 TTTTTTTTAT TTTTGCAA chrIII:2768802-2768882 40 6.21e-05 GGCACGTGGT TTTTGCAA GAGTGCCGCA chrIV:9191389-9191469 19 6.21e-05 ACAGTTGAGA TTTTGCAA AGGGCGTTTA chrV:6785279-6785359 23 6.21e-05 GGCACGCAGT TTTTGCAA GGAGCGTGCA chrIII:9629902-9629982 65 6.21e-05 CCCCGCCTCT TTTTGCAA CGCTCGCA chrI:9249408-9249488 61 6.21e-05 TGTTGATGGT TTTTGCAA TGGGAAAGAT chrV:11239324-11239404 55 6.21e-05 TGCGCGGGTT TTTTGCAA CCCCGCCGCA chrII:7708736-7708816 31 6.21e-05 CGCGCACGGT TTTTGCAA TTCTCCCGCA chrV:9583092-9583172 27 6.21e-05 GCGCACGCTA TTTTGCAA GGTTGTCGCA chrI:5986276-5986356 67 7.68e-05 TTGTTACAAA TTGCGCAA GTGCAA chrI:1958493-1958573 64 7.68e-05 TGCGGCGGTG TTGCGCAA CGGTGTGCG chrIII:5555084-5555164 42 7.68e-05 CGCGGGGCAC TTGCGCAA AAAGCGCGCG chrIII:6972029-6972109 21 1.25e-04 CTCACGTTAA TTTCACAA GGCCCAAAAA chrX:6292255-6292335 1 1.25e-04 . TTTTGAAA AATAAAAAAA chrX:15297399-15297479 62 1.25e-04 CGTCCACCTC TTTCACAA CGGCCGCCAT chrIV:6756639-6756719 26 1.43e-04 TGCGGGGGCA TTGCGAAA GCTCGCGCCG chrIII:10461274-10461354 36 1.43e-04 CGCGGCACAC TTGCGAAA CCCTGTGCGG chrIII:13268985-13269065 11 1.43e-04 TGCCGCACAC TTGCGAAA ACTGCGCGCC chrX:12563806-12563886 63 1.43e-04 AATTTCTTTT TTGCGAAA AAGTATTGGC chrIV:9316202-9316282 31 1.43e-04 TGCGGCGGAA TTGCGAAA GCATGCGCCG chrI:14708072-14708152 16 1.43e-04 TCTCTAAAAA TTGCGAAA TAAATTCGAA chrIII:3916747-3916827 7 1.43e-04 AACATT TTGCGAAA TAAAGAAAAA chrII:4238055-4238135 36 1.43e-04 TGCGGCACAC TTGCGAAA ATGCGTGCGG chrV:7060387-7060467 54 1.69e-04 TTACAATATC TTTCaaaa gaacaaagga chrV:12780368-12780448 7 1.69e-04 TAAAAA TTTCAAAA ATTCGCTGCG chrM:2230-2310 26 1.69e-04 TTTAATTTTG TTTCAAAA TTTAATTTGA chrII:4521877-4521957 28 1.69e-04 tgcacgtcga tttcaaaa tcgattttct chrX:12665269-12665349 58 1.87e-04 TTTTATTATT TTGTGCAA GACGTTAATT chrIV:5967197-5967277 41 2.14e-04 GGGCTTATGT TTTTACAA AGTTTTAACA chrM:2642-2722 35 2.14e-04 TTTGTTTTTG TTTTACAA TTTTTGTTTT chrIV:16400934-16401014 42 2.53e-04 CAACTCCTTT TTGTGAAA TTTGAAATTA chrX:14525789-14525869 10 2.86e-04 ATAAAATAA TTTTAAAA GATGAGCAAA chrX:7985843-7985923 2 2.86e-04 A TTTTAAAA CACCTCTCCG chrI:14113245-14113325 24 3.07e-04 CGTGCGCCAC TTGCAAAA AGGGGCGGAG chrV:11610636-11610716 12 3.07e-04 CGCGCTCATC TTGCAAAA AATGTGCGCG chrI:14737431-14737511 49 3.07e-04 TGCGAGCCCT TTGCAAAA TGTGTGCGCA chrV:4731530-4731610 60 3.07e-04 TGCGGGGACA TTGCAAAA ACGCGCGCGC chrI:4633635-4633715 67 3.07e-04 TGTGCCAGGG TTGCAAAA AATCAT chrIII:1824674-1824754 38 3.07e-04 TGCGGCGCTC TTGCAAAA TCGCGCGCCG chrI:1175816-1175896 51 3.07e-04 TGCGGCACAC TTGCAAAA ACCGTGCGCC chrI:3873906-3873986 69 3.07e-04 gcgccgcaca ttgcAAAA CTGC chrV:53435-53515 41 3.25e-04 ctcacacgtg tttcgcat ggccgagtgg chrII:4521018-4521098 27 3.25e-04 GATCTCAAGA TTTCGCAT CAGTTCCAGC chrV:10808033-10808113 13 3.91e-04 AACCACCGCT TTTCGAAT AACCAGTGGG chrII:5399413-5399493 21 3.91e-04 CTATTTTAGA TTTCGAAT TTGTTTTTTT chrIV:10351072-10351152 27 4.44e-04 ATAATAAATT TTGTAAAA AATTAGTAAG chrM:4021-4101 43 4.44e-04 GTTTCATTTT TTGTAAAA ATTTTCTCAT chrX:8836149-8836229 42 4.67e-04 GGAAGTTTCT TTTTGCAT AGTTTTTACT chrI:6781827-6781907 55 4.67e-04 CCTAAATACT TTTTGCAT TTTGGCTTCT chrII:255295-255375 14 5.10e-04 CGAAAATGTT TTTTTCAA AGCGATGCAA chrX:3036185-3036265 63 5.10e-04 AACTTTTTAA TTTTTCAA ACAAATTTTA chrX:2549482-2549562 5 5.10e-04 CTAT TTTTTCAA TTCTCATTTC chrIV:14013767-14013847 19 5.10e-04 TTTTTATTGC TTTTTCAA TAAAAAGATA chrIII:5602195-5602275 73 5.78e-04 GGTAAGGGGT TTTTGAAT chrIII:13779075-13779155 34 5.78e-04 AAAAAATGAA TTTCACAT TTTTAAAGAA chrX:6286325-6286405 73 6.30e-04 CTCCATTACT TTTTTAAA chrM:4751-4831 36 6.30e-04 TATTTACATA TTTTTAAA GGGTTATTTT chrM:5768-5848 1 6.30e-04 . TTTTTAAA TTTGGACTAT chrM:509-589 3 6.30e-04 AT TTTTTAAA TTTTTCAGGT chrII:5782067-5782147 29 6.97e-04 GTGCTTGTTT TTGTGCAT TCCTTCCTGA chrM:11640-11720 7 7.47e-04 GGAGGA TTTTACAT AGAGTGATGA chrM:7794-7874 45 8.66e-04 AGTATTCAAC TTTTAAAT TAATCTTTAT chrIV:13386228-13386308 18 9.09e-04 TGCGGCGTTG TTGCAAAT CTTGTGTGCT chrIII:1601554-1601634 46 9.09e-04 GGGACCTATT TTTCCAAA AGCGAGGTCG chrIII:4568708-4568788 49 9.09e-04 CGTGCGGCGC TTGCAAAT CAATCGGTCG chrIII:3175130-3175210 65 9.09e-04 TGCCGCTTGC TTGCAAAT GGGCGGGG chrV:18722701-18722781 37 9.76e-04 ATTCCAATTT TTTTCCAA CACGGAGTGG chrX:15377874-15377954 58 1.07e-03 TGAACTGAAC TTTCTAAT TATTCATGCT chrX:12171870-12171950 8 1.09e-03 CCTATAA TTGCCAAA CACCGCCAAA chrIII:8106587-8106667 29 1.12e-03 TTGGCATGTA TTTTTCAT GTAGGCCTTT chrM:6589-6669 12 1.12e-03 TTTTTAATAA TTTTTCAT GAGGCGGACT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTKYRMAA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:7039571-7039651 1.8e-05 64_[+2]_8 chrIV:16863574-16863654 1.8e-05 59_[+2]_13 chrV:11113307-11113387 1.8e-05 66_[+2]_6 chrI:1444157-1444237 1.8e-05 45_[+2]_27 chrII:7255852-7255932 1.8e-05 33_[+2]_39 chrI:14721602-14721682 1.8e-05 29_[+2]_43 chrIII:3664402-3664482 1.8e-05 27_[+2]_45 chrV:3587821-3587901 1.8e-05 4_[+2]_68 chrI:4172209-4172289 4e-05 37_[+2]_35 chrII:14497011-14497091 4e-05 69_[+2]_3 chrI:12198642-12198722 6.2e-05 38_[+2]_34 chrII:8547191-8547271 6.2e-05 43_[+2]_29 chrII:6047695-6047775 6.2e-05 72_[+2] chrIII:2768802-2768882 6.2e-05 39_[+2]_33 chrIV:9191389-9191469 6.2e-05 18_[+2]_54 chrV:6785279-6785359 6.2e-05 22_[+2]_50 chrIII:9629902-9629982 6.2e-05 64_[+2]_8 chrI:9249408-9249488 6.2e-05 60_[+2]_12 chrV:11239324-11239404 6.2e-05 54_[+2]_18 chrII:7708736-7708816 6.2e-05 30_[+2]_42 chrV:9583092-9583172 6.2e-05 26_[+2]_46 chrI:5986276-5986356 7.7e-05 66_[+2]_6 chrI:1958493-1958573 7.7e-05 63_[+2]_9 chrIII:5555084-5555164 7.7e-05 41_[+2]_31 chrIII:6972029-6972109 0.00013 20_[+2]_52 chrX:6292255-6292335 0.00013 [+2]_72 chrX:15297399-15297479 0.00013 61_[+2]_11 chrIV:6756639-6756719 0.00014 25_[+2]_47 chrIII:10461274-10461354 0.00014 35_[+2]_37 chrIII:13268985-13269065 0.00014 10_[+2]_62 chrX:12563806-12563886 0.00014 62_[+2]_10 chrIV:9316202-9316282 0.00014 30_[+2]_42 chrI:14708072-14708152 0.00014 15_[+2]_57 chrIII:3916747-3916827 0.00014 6_[+2]_66 chrII:4238055-4238135 0.00014 35_[+2]_37 chrV:7060387-7060467 0.00017 53_[+2]_19 chrV:12780368-12780448 0.00017 6_[+2]_66 chrM:2230-2310 0.00017 25_[+2]_47 chrII:4521877-4521957 0.00017 27_[+2]_45 chrX:12665269-12665349 0.00019 57_[+2]_15 chrIV:5967197-5967277 0.00021 40_[+2]_32 chrM:2642-2722 0.00021 34_[+2]_38 chrIV:16400934-16401014 0.00025 41_[+2]_31 chrX:14525789-14525869 0.00029 9_[+2]_63 chrX:7985843-7985923 0.00029 1_[+2]_71 chrI:14113245-14113325 0.00031 23_[+2]_49 chrV:11610636-11610716 0.00031 11_[+2]_61 chrI:14737431-14737511 0.00031 48_[+2]_24 chrV:4731530-4731610 0.00031 59_[+2]_13 chrI:4633635-4633715 0.00031 66_[+2]_6 chrIII:1824674-1824754 0.00031 37_[+2]_35 chrI:1175816-1175896 0.00031 50_[+2]_22 chrI:3873906-3873986 0.00031 68_[+2]_4 chrV:53435-53515 0.00033 40_[+2]_32 chrII:4521018-4521098 0.00033 26_[+2]_46 chrV:10808033-10808113 0.00039 12_[+2]_60 chrII:5399413-5399493 0.00039 20_[+2]_52 chrIV:10351072-10351152 0.00044 26_[+2]_46 chrM:4021-4101 0.00044 42_[+2]_30 chrX:8836149-8836229 0.00047 41_[+2]_31 chrI:6781827-6781907 0.00047 54_[+2]_18 chrII:255295-255375 0.00051 13_[+2]_59 chrX:3036185-3036265 0.00051 62_[+2]_10 chrX:2549482-2549562 0.00051 4_[+2]_68 chrIV:14013767-14013847 0.00051 18_[+2]_54 chrIII:5602195-5602275 0.00058 72_[+2] chrIII:13779075-13779155 0.00058 33_[+2]_39 chrX:6286325-6286405 0.00063 72_[+2] chrM:4751-4831 0.00063 35_[+2]_37 chrM:5768-5848 0.00063 [+2]_72 chrM:509-589 0.00063 2_[+2]_70 chrII:5782067-5782147 0.0007 28_[+2]_44 chrM:11640-11720 0.00075 6_[+2]_66 chrM:7794-7874 0.00087 44_[+2]_28 chrIV:13386228-13386308 0.00091 17_[+2]_55 chrIII:1601554-1601634 0.00091 45_[+2]_27 chrIII:4568708-4568788 0.00091 48_[+2]_24 chrIII:3175130-3175210 0.00091 64_[+2]_8 chrV:18722701-18722781 0.00098 36_[+2]_36 chrX:15377874-15377954 0.0011 57_[+2]_15 chrX:12171870-12171950 0.0011 7_[+2]_65 chrIII:8106587-8106667 0.0011 28_[+2]_44 chrM:6589-6669 0.0011 11_[+2]_61 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTKYRMAA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTKYRMAA width=8 seqs=83 chrIV:7039571-7039651 ( 65) TTTCGCAA 1 chrIV:16863574-16863654 ( 60) TTTCGCAA 1 chrV:11113307-11113387 ( 67) TTTCGCAA 1 chrI:1444157-1444237 ( 46) TTTCGCAA 1 chrII:7255852-7255932 ( 34) TTTCGCAA 1 chrI:14721602-14721682 ( 30) TTTCGCAA 1 chrIII:3664402-3664482 ( 28) TTTCGCAA 1 chrV:3587821-3587901 ( 5) TTTCGCAA 1 chrI:4172209-4172289 ( 38) TTTCGAAA 1 chrII:14497011-14497091 ( 70) TTTCGAAA 1 chrI:12198642-12198722 ( 39) TTTTGCAA 1 chrII:8547191-8547271 ( 44) TTTTGCAA 1 chrII:6047695-6047775 ( 73) TTTTGCAA 1 chrIII:2768802-2768882 ( 40) TTTTGCAA 1 chrIV:9191389-9191469 ( 19) TTTTGCAA 1 chrV:6785279-6785359 ( 23) TTTTGCAA 1 chrIII:9629902-9629982 ( 65) TTTTGCAA 1 chrI:9249408-9249488 ( 61) TTTTGCAA 1 chrV:11239324-11239404 ( 55) TTTTGCAA 1 chrII:7708736-7708816 ( 31) TTTTGCAA 1 chrV:9583092-9583172 ( 27) TTTTGCAA 1 chrI:5986276-5986356 ( 67) TTGCGCAA 1 chrI:1958493-1958573 ( 64) TTGCGCAA 1 chrIII:5555084-5555164 ( 42) TTGCGCAA 1 chrIII:6972029-6972109 ( 21) TTTCACAA 1 chrX:6292255-6292335 ( 1) TTTTGAAA 1 chrX:15297399-15297479 ( 62) TTTCACAA 1 chrIV:6756639-6756719 ( 26) TTGCGAAA 1 chrIII:10461274-10461354 ( 36) TTGCGAAA 1 chrIII:13268985-13269065 ( 11) TTGCGAAA 1 chrX:12563806-12563886 ( 63) TTGCGAAA 1 chrIV:9316202-9316282 ( 31) TTGCGAAA 1 chrI:14708072-14708152 ( 16) TTGCGAAA 1 chrIII:3916747-3916827 ( 7) TTGCGAAA 1 chrII:4238055-4238135 ( 36) TTGCGAAA 1 chrV:7060387-7060467 ( 54) TTTCAAAA 1 chrV:12780368-12780448 ( 7) TTTCAAAA 1 chrM:2230-2310 ( 26) TTTCAAAA 1 chrII:4521877-4521957 ( 28) TTTCAAAA 1 chrX:12665269-12665349 ( 58) TTGTGCAA 1 chrIV:5967197-5967277 ( 41) TTTTACAA 1 chrM:2642-2722 ( 35) TTTTACAA 1 chrIV:16400934-16401014 ( 42) TTGTGAAA 1 chrX:14525789-14525869 ( 10) TTTTAAAA 1 chrX:7985843-7985923 ( 2) TTTTAAAA 1 chrI:14113245-14113325 ( 24) TTGCAAAA 1 chrV:11610636-11610716 ( 12) TTGCAAAA 1 chrI:14737431-14737511 ( 49) TTGCAAAA 1 chrV:4731530-4731610 ( 60) TTGCAAAA 1 chrI:4633635-4633715 ( 67) TTGCAAAA 1 chrIII:1824674-1824754 ( 38) TTGCAAAA 1 chrI:1175816-1175896 ( 51) TTGCAAAA 1 chrI:3873906-3873986 ( 69) TTGCAAAA 1 chrV:53435-53515 ( 41) TTTCGCAT 1 chrII:4521018-4521098 ( 27) TTTCGCAT 1 chrV:10808033-10808113 ( 13) TTTCGAAT 1 chrII:5399413-5399493 ( 21) TTTCGAAT 1 chrIV:10351072-10351152 ( 27) TTGTAAAA 1 chrM:4021-4101 ( 43) TTGTAAAA 1 chrX:8836149-8836229 ( 42) TTTTGCAT 1 chrI:6781827-6781907 ( 55) TTTTGCAT 1 chrII:255295-255375 ( 14) TTTTTCAA 1 chrX:3036185-3036265 ( 63) TTTTTCAA 1 chrX:2549482-2549562 ( 5) TTTTTCAA 1 chrIV:14013767-14013847 ( 19) TTTTTCAA 1 chrIII:5602195-5602275 ( 73) TTTTGAAT 1 chrIII:13779075-13779155 ( 34) TTTCACAT 1 chrX:6286325-6286405 ( 73) TTTTTAAA 1 chrM:4751-4831 ( 36) TTTTTAAA 1 chrM:5768-5848 ( 1) TTTTTAAA 1 chrM:509-589 ( 3) TTTTTAAA 1 chrII:5782067-5782147 ( 29) TTGTGCAT 1 chrM:11640-11720 ( 7) TTTTACAT 1 chrM:7794-7874 ( 45) TTTTAAAT 1 chrIV:13386228-13386308 ( 18) TTGCAAAT 1 chrIII:1601554-1601634 ( 46) TTTCCAAA 1 chrIII:4568708-4568788 ( 49) TTGCAAAT 1 chrIII:3175130-3175210 ( 65) TTGCAAAT 1 chrV:18722701-18722781 ( 37) TTTTCCAA 1 chrX:15377874-15377954 ( 58) TTTCTAAT 1 chrX:12171870-12171950 ( 8) TTGCCAAA 1 chrIII:8106587-8106667 ( 29) TTTTTCAT 1 chrM:6589-6669 ( 12) TTTTTCAT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTKYRMAA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.7531 E= 6.7e-013 -1302 -1302 -1302 184 -1302 -1302 -1302 184 -1302 -1302 57 125 -1302 131 -1302 67 21 -262 119 -108 91 115 -1302 -1302 189 -1302 -1302 -1302 156 -1302 -1302 -45 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTKYRMAA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 83 E= 6.7e-013 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.337349 0.662651 0.000000 0.554217 0.000000 0.445783 0.313253 0.036145 0.518072 0.132530 0.506024 0.493976 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.795181 0.000000 0.000000 0.204819 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTKYRMAA MEME-2 regular expression -------------------------------------------------------------------------------- TT[TG][CT][GA][AC]A[AT] -------------------------------------------------------------------------------- Time 10.21 secs. ******************************************************************************** ******************************************************************************** MOTIF TCGAACCC MEME-3 width = 8 sites = 39 llr = 332 E-value = 1.9e-009 ******************************************************************************** -------------------------------------------------------------------------------- Motif TCGAACCC MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::a6::1 pos.-specific C :8::17a8 probability G ::a::::: matrix T a2::23:1 bits 2.2 * 1.9 * ** * 1.7 * ** * 1.5 **** * Relative 1.3 **** ** Entropy 1.1 **** *** (12.3 bits) 0.9 **** *** 0.6 **** *** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TCGAACCC consensus TT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCGAACCC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrI:1446960-1447040 13 1.15e-05 GCATGTGGAA TCGAACCC CGGTCTTGTG chrX:12106160-12106240 2 1.15e-05 C TCGAACCC GCGACAACCA chrX:6292255-6292335 38 1.15e-05 GTATGGGGAA TCGAACCC CAGACTTCTC chrIV:11549839-11549919 36 1.15e-05 GCCACGAGAA TCGAACCC GTGATGCATA chrX:1880820-1880900 12 1.15e-05 GAACCGGGAA TCGAACCC GGGACCTCTC chrX:16928264-16928344 22 1.15e-05 cgaccgggaa tcgaaccc gggccgcccg chrIV:3552203-3552283 1 1.15e-05 . TCGAACCC GGGACCTCTC chrIV:14013767-14013847 53 1.15e-05 GTATGGGGAA TCGAACCC CAGACTTCTC chrIV:620492-620572 44 1.15e-05 GGTCGCCGGT TCGAACCC GGCGAGGACC chrX:13665605-13665685 50 3.77e-05 GTGCGTGGGT TCGAATCC CACTTCGTGC chrX:12665269-12665349 24 3.77e-05 GGTCACTGGT TCGAATCC GGTTCGACGG chrI:12198642-12198722 15 3.77e-05 GATTGCAGGT TCGATCCC TGCCTGGGTC chrV:12303597-12303677 69 4.71e-05 CTTCGTTGGT TCGACCCC CGCG chrII:5032797-5032877 28 4.71e-05 GGTCGCAGGT TCGACCCC TGCTGGCGGC chrII:12494743-12494823 53 4.71e-05 GGTCGCAGGT TCGACCCC TGCTGGCGGC chrIV:3233045-3233125 35 4.71e-05 GTCGTCCCAA TCGACCCC GGCCGCTTTC chrV:13003516-13003596 8 6.15e-05 TGGGGAA TTGAACCC CAGCCCTCTC chrX:2227185-2227265 21 6.15e-05 cggccgggaa ttgaaccc gggtctcgca chrV:15551767-15551847 47 6.15e-05 cggccgggaa ttgaaccc gggtctcgca chrX:13511952-13512032 33 6.15e-05 GAACCGGGGA TTGAACCC GGGACCTCTC chrX:16604679-16604759 56 6.15e-05 CGGCCGGGAA TTGAACCC GGGTCTCGCA chrX:3036185-3036265 32 7.63e-05 CGACGGGGGT TCGATTCC CCCCGAACGC chrX:8836149-8836229 17 7.63e-05 CGGCCCGGGT TCGATTCC CGGCATGGGA chrIV:8927200-8927280 55 7.63e-05 GTCCGCGTGA TCGATTCC CGCCCGCGCC chrX:9743628-9743708 14 7.63e-05 AGTCTGGGGT TCGATTCC CCATACCTCC chrX:2613258-2613338 37 7.63e-05 cggcccgggt tcgattcc cggtcgatgc chrIV:16400934-16401014 15 7.63e-05 CGACGCTGGT TCGATTCC AGCCGCAGGC chrX:6286325-6286405 49 7.63e-05 AGTCTGGGGT TCGATTCC CCATACCTCC chrX:5085601-5085681 36 9.07e-05 CCAGCAGGGG TCGAACCT GCGACCTTGG chrIII:4470865-4470945 36 9.07e-05 ACGGCAGGAC TCGAACCT GCAATCCCCA chrV:12780368-12780448 33 9.07e-05 CGAGCAGGGT TCGAACCT ACGCGGGCAA chrII:14497011-14497091 52 1.03e-04 AATCCAAAGT TCGACTCC ACTCGAGTAC chrX:410356-410436 68 1.35e-04 ACTCAGGACT TTGAATCC TGCGA chrX:2549482-2549562 61 1.49e-04 CCGGGTGGGC TCGAACCA CCAACCTTTC chrIII:1601554-1601634 28 1.49e-04 AGTGTGGGGT TCGAACCA GGGACCTATT chrIV:5967197-5967277 17 1.92e-04 TGTCGCGGGT TCGAGCCC CGCATTGGGC chrX:6593587-6593667 63 1.92e-04 GGTCACCAGT TCGATCCT GGTTCGGGGC chrV:6227422-6227502 11 1.92e-04 ATCGAATGAA TCGAATCT ACACATATTG chrIV:13386228-13386308 63 2.27e-04 ACGCGCTCCA TCGAACGC AAGCCAATTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCGAACCC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:1446960-1447040 1.1e-05 12_[+3]_60 chrX:12106160-12106240 1.1e-05 1_[+3]_71 chrX:6292255-6292335 1.1e-05 37_[+3]_35 chrIV:11549839-11549919 1.1e-05 35_[+3]_37 chrX:1880820-1880900 1.1e-05 11_[+3]_61 chrX:16928264-16928344 1.1e-05 21_[+3]_51 chrIV:3552203-3552283 1.1e-05 [+3]_72 chrIV:14013767-14013847 1.1e-05 52_[+3]_20 chrIV:620492-620572 1.1e-05 43_[+3]_29 chrX:13665605-13665685 3.8e-05 49_[+3]_23 chrX:12665269-12665349 3.8e-05 23_[+3]_49 chrI:12198642-12198722 3.8e-05 14_[+3]_58 chrV:12303597-12303677 4.7e-05 68_[+3]_4 chrII:5032797-5032877 4.7e-05 27_[+3]_45 chrII:12494743-12494823 4.7e-05 52_[+3]_20 chrIV:3233045-3233125 4.7e-05 34_[+3]_38 chrV:13003516-13003596 6.1e-05 7_[+3]_65 chrX:2227185-2227265 6.1e-05 20_[+3]_52 chrV:15551767-15551847 6.1e-05 46_[+3]_26 chrX:13511952-13512032 6.1e-05 32_[+3]_40 chrX:16604679-16604759 6.1e-05 55_[+3]_17 chrX:3036185-3036265 7.6e-05 31_[+3]_41 chrX:8836149-8836229 7.6e-05 16_[+3]_56 chrIV:8927200-8927280 7.6e-05 54_[+3]_18 chrX:9743628-9743708 7.6e-05 13_[+3]_59 chrX:2613258-2613338 7.6e-05 36_[+3]_36 chrIV:16400934-16401014 7.6e-05 14_[+3]_58 chrX:6286325-6286405 7.6e-05 48_[+3]_24 chrX:5085601-5085681 9.1e-05 35_[+3]_37 chrIII:4470865-4470945 9.1e-05 35_[+3]_37 chrV:12780368-12780448 9.1e-05 32_[+3]_40 chrII:14497011-14497091 0.0001 51_[+3]_21 chrX:410356-410436 0.00014 67_[+3]_5 chrX:2549482-2549562 0.00015 60_[+3]_12 chrIII:1601554-1601634 0.00015 27_[+3]_45 chrIV:5967197-5967277 0.00019 16_[+3]_56 chrX:6593587-6593667 0.00019 62_[+3]_10 chrV:6227422-6227502 0.00019 10_[+3]_62 chrIV:13386228-13386308 0.00023 62_[+3]_10 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCGAACCC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TCGAACCC width=8 seqs=39 chrI:1446960-1447040 ( 13) TCGAACCC 1 chrX:12106160-12106240 ( 2) TCGAACCC 1 chrX:6292255-6292335 ( 38) TCGAACCC 1 chrIV:11549839-11549919 ( 36) TCGAACCC 1 chrX:1880820-1880900 ( 12) TCGAACCC 1 chrX:16928264-16928344 ( 22) TCGAACCC 1 chrIV:3552203-3552283 ( 1) TCGAACCC 1 chrIV:14013767-14013847 ( 53) TCGAACCC 1 chrIV:620492-620572 ( 44) TCGAACCC 1 chrX:13665605-13665685 ( 50) TCGAATCC 1 chrX:12665269-12665349 ( 24) TCGAATCC 1 chrI:12198642-12198722 ( 15) TCGATCCC 1 chrV:12303597-12303677 ( 69) TCGACCCC 1 chrII:5032797-5032877 ( 28) TCGACCCC 1 chrII:12494743-12494823 ( 53) TCGACCCC 1 chrIV:3233045-3233125 ( 35) TCGACCCC 1 chrV:13003516-13003596 ( 8) TTGAACCC 1 chrX:2227185-2227265 ( 21) TTGAACCC 1 chrV:15551767-15551847 ( 47) TTGAACCC 1 chrX:13511952-13512032 ( 33) TTGAACCC 1 chrX:16604679-16604759 ( 56) TTGAACCC 1 chrX:3036185-3036265 ( 32) TCGATTCC 1 chrX:8836149-8836229 ( 17) TCGATTCC 1 chrIV:8927200-8927280 ( 55) TCGATTCC 1 chrX:9743628-9743708 ( 14) TCGATTCC 1 chrX:2613258-2613338 ( 37) TCGATTCC 1 chrIV:16400934-16401014 ( 15) TCGATTCC 1 chrX:6286325-6286405 ( 49) TCGATTCC 1 chrX:5085601-5085681 ( 36) TCGAACCT 1 chrIII:4470865-4470945 ( 36) TCGAACCT 1 chrV:12780368-12780448 ( 33) TCGAACCT 1 chrII:14497011-14497091 ( 52) TCGACTCC 1 chrX:410356-410436 ( 68) TTGAATCC 1 chrX:2549482-2549562 ( 61) TCGAACCA 1 chrIII:1601554-1601634 ( 28) TCGAACCA 1 chrIV:5967197-5967277 ( 17) TCGAGCCC 1 chrX:6593587-6593667 ( 63) TCGATCCT 1 chrV:6227422-6227502 ( 11) TCGAATCT 1 chrIV:13386228-13386308 ( 63) TCGAACGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCGAACCC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.09119 E= 1.9e-009 -1193 -1193 -1193 184 -1193 192 -1193 -86 -1193 -1193 214 -1193 189 -1193 -1193 -1193 119 -80 -315 -28 -1193 163 -1193 14 -1193 213 -315 -1193 -240 188 -1193 -112 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCGAACCC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 39 E= 1.9e-009 0.000000 0.000000 0.000000 1.000000 0.000000 0.846154 0.000000 0.153846 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.615385 0.128205 0.025641 0.230769 0.000000 0.692308 0.000000 0.307692 0.000000 0.974359 0.025641 0.000000 0.051282 0.820513 0.000000 0.128205 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCGAACCC MEME-3 regular expression -------------------------------------------------------------------------------- TCGA[AT][CT]CC -------------------------------------------------------------------------------- Time 13.66 secs. ******************************************************************************** ******************************************************************************** MOTIF CYCCGCCC MEME-4 width = 8 sites = 22 llr = 204 E-value = 3.6e-003 ******************************************************************************** -------------------------------------------------------------------------------- Motif CYCCGCCC MEME-4 Description -------------------------------------------------------------------------------- Simplified A ::::1::: pos.-specific C a4aa:999 probability G ::::8111 matrix T :6::1::: bits 2.2 * ** 1.9 * ** 1.7 * ** ** 1.5 * ** *** Relative 1.3 * ** *** Entropy 1.1 * ****** (13.4 bits) 0.9 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CTCCGCCC consensus C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYCCGCCC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIV:6756639-6756719 69 7.82e-06 GTTTGCCTGA CTCCGCCC ACAT chrI:4132312-4132392 7 7.82e-06 GCAAGT CTCCGCCC ACTTTAACCG chrI:9249408-9249488 7 7.82e-06 TTGAGA CTCCGCCC ACCGCAAGGC chrIII:4171148-4171228 63 7.82e-06 GCAAAGAACG CTCCGCCC ACAAACATTC chrI:14708072-14708152 54 7.82e-06 ATTCTCCAAA CTCCGCCC ATTTGCAACT chrII:4238055-4238135 69 7.82e-06 TGCAACTTAG CTCCGCCC ACCC chrI:14606031-14606111 52 7.82e-06 CACCCCCTGG CTCCGCCC ATTTTTCTGC chrI:1444157-1444237 15 1.41e-05 AGATCACCGA CCCCGCCC CCTTTGCAAC chrIV:9316202-9316282 73 1.41e-05 TTGTCATCAT CCCCGCCC chrIV:16505892-16505972 41 3.16e-05 CTAGACCCGC CTCCTCCC CCATTTGCCC chrX:14115659-14115739 16 3.16e-05 GGCAAACGAC CTCCTCCC ACTTTCGTGG chrX:9296725-9296805 36 3.16e-05 TTCGGTGAGA CTCCTCCC CCATGCAACC chrX:2227185-2227265 8 3.80e-05 GATTTCT CCCcggcc gggaattgaa chrV:15551767-15551847 34 3.80e-05 AAAAGATTCT CCCcggcc gggaattgaa chrX:16604679-16604759 43 3.80e-05 AAAAGATTCT CCCCGGCC GGGAATTGAA chrIII:8937676-8937756 17 7.10e-05 ATTCACTTTT CTCCACCC TTTCGCTGTT chrIII:13268985-13269065 54 7.10e-05 TTGCCTCTAG CTCCACCC ACATTTTTTG chrV:3587821-3587901 13 7.10e-05 GATTTCGCAA CTCCGCCG CACAGTTTTA chrII:12798828-12798908 55 7.73e-05 GTGCGCTATG CGCCGCCC TTTCCCCCAC chrV:10808033-10808113 58 9.75e-05 ATTGCAATAC CCCCGCGC AAATGTTTGC chrV:11239324-11239404 63 9.75e-05 TTTTTTGCAA CCCCGCCG CATGCGGTAG chrV:7231017-7231097 17 9.75e-05 GAGTCGCAAC CCCCGCGC ACTTTTTATG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYCCGCCC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:6756639-6756719 7.8e-06 68_[+4]_4 chrI:4132312-4132392 7.8e-06 6_[+4]_66 chrI:9249408-9249488 7.8e-06 6_[+4]_66 chrIII:4171148-4171228 7.8e-06 62_[+4]_10 chrI:14708072-14708152 7.8e-06 53_[+4]_19 chrII:4238055-4238135 7.8e-06 68_[+4]_4 chrI:14606031-14606111 7.8e-06 51_[+4]_21 chrI:1444157-1444237 1.4e-05 14_[+4]_58 chrIV:9316202-9316282 1.4e-05 72_[+4] chrIV:16505892-16505972 3.2e-05 40_[+4]_32 chrX:14115659-14115739 3.2e-05 15_[+4]_57 chrX:9296725-9296805 3.2e-05 35_[+4]_37 chrX:2227185-2227265 3.8e-05 7_[+4]_65 chrV:15551767-15551847 3.8e-05 33_[+4]_39 chrX:16604679-16604759 3.8e-05 42_[+4]_30 chrIII:8937676-8937756 7.1e-05 16_[+4]_56 chrIII:13268985-13269065 7.1e-05 53_[+4]_19 chrV:3587821-3587901 7.1e-05 12_[+4]_60 chrII:12798828-12798908 7.7e-05 54_[+4]_18 chrV:10808033-10808113 9.8e-05 57_[+4]_15 chrV:11239324-11239404 9.8e-05 62_[+4]_10 chrV:7231017-7231097 9.8e-05 16_[+4]_56 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYCCGCCC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CYCCGCCC width=8 seqs=22 chrIV:6756639-6756719 ( 69) CTCCGCCC 1 chrI:4132312-4132392 ( 7) CTCCGCCC 1 chrI:9249408-9249488 ( 7) CTCCGCCC 1 chrIII:4171148-4171228 ( 63) CTCCGCCC 1 chrI:14708072-14708152 ( 54) CTCCGCCC 1 chrII:4238055-4238135 ( 69) CTCCGCCC 1 chrI:14606031-14606111 ( 52) CTCCGCCC 1 chrI:1444157-1444237 ( 15) CCCCGCCC 1 chrIV:9316202-9316282 ( 73) CCCCGCCC 1 chrIV:16505892-16505972 ( 41) CTCCTCCC 1 chrX:14115659-14115739 ( 16) CTCCTCCC 1 chrX:9296725-9296805 ( 36) CTCCTCCC 1 chrX:2227185-2227265 ( 8) CCCCGGCC 1 chrV:15551767-15551847 ( 34) CCCCGGCC 1 chrX:16604679-16604759 ( 43) CCCCGGCC 1 chrIII:8937676-8937756 ( 17) CTCCACCC 1 chrIII:13268985-13269065 ( 54) CTCCACCC 1 chrV:3587821-3587901 ( 13) CTCCGCCG 1 chrII:12798828-12798908 ( 55) CGCCGCCC 1 chrV:10808033-10808113 ( 58) CCCCGCGC 1 chrV:11239324-11239404 ( 63) CCCCGCCG 1 chrV:7231017-7231097 ( 17) CCCCGCGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYCCGCCC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.7218 E= 3.6e-003 -1110 216 -1110 -1110 -1110 70 -232 108 -1110 216 -1110 -1110 -1110 216 -1110 -1110 -157 -1110 176 -103 -1110 195 -74 -1110 -1110 203 -132 -1110 -1110 203 -132 -1110 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYCCGCCC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 22 E= 3.6e-003 0.000000 1.000000 0.000000 0.000000 0.000000 0.363636 0.045455 0.590909 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.090909 0.000000 0.772727 0.136364 0.000000 0.863636 0.136364 0.000000 0.000000 0.909091 0.090909 0.000000 0.000000 0.909091 0.090909 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYCCGCCC MEME-4 regular expression -------------------------------------------------------------------------------- C[TC]CCGCCC -------------------------------------------------------------------------------- Time 17.08 secs. ******************************************************************************** ******************************************************************************** MOTIF GCCGCASG MEME-5 width = 8 sites = 21 llr = 193 E-value = 5.7e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCCGCASG MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::9:1 pos.-specific C :8a:a15: probability G a2:a::49 matrix T ::::::1: bits 2.2 *** 1.9 * *** 1.7 * *** 1.5 ****** * Relative 1.3 ****** * Entropy 1.1 ****** * (13.3 bits) 0.9 ****** * 0.6 ****** * 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GCCGCACG consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCGCASG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIII:2768802-2768882 52 7.91e-06 TTGCAAGAGT GCCGCACG TGGTTTTTTT chrI:9249408-9249488 26 7.91e-06 CCGCAAGGCC GCCGCACG CTTTTAAGAG chrI:14708072-14708152 72 7.91e-06 ATTTGCAACT GCCGCACG G chrI:14721602-14721682 42 7.91e-06 TCGCAATATC GCCGCACG GAGTTGCCGT chrIII:3664402-3664482 40 7.91e-06 TCGCAACGCT GCCGCACG TAGTTTATGT chrV:7231017-7231097 42 7.91e-06 ATGCAATGCT GCCGCACG AATTCCTCTC chrIV:16400934-16401014 24 1.60e-05 TTCGATTCCA GCCGCAGG CAACTCCTTT chrIII:1824674-1824754 52 1.60e-05 AAAATCGCGC GCCGCAGG CTGCAAAGAG chrV:11782886-11782966 41 3.24e-05 TTGCGCGCAT GGCGCAGG CGGTTAGATT chrIV:7574028-7574108 41 3.24e-05 ACGGCCTTGT GGCGCAGG CGGTTACTGC chrII:11960798-11960878 29 3.24e-05 ACACCGTTGT GGCGCAGG CGGGTAGCGG chrX:15742035-15742115 71 3.24e-05 CTCTCAGGAG GGCGCAGG TT chrIV:6756639-6756719 40 4.23e-05 GAAAGCTCGC GCCGCATG TTGCGAATGG chrX:9296725-9296805 55 4.23e-05 CATGCAACCC GCCGCATG GTGTTTTGCC chrIII:13268985-13269065 2 5.16e-05 T GCCGCACA CTTGCGAAAA chrI:6532040-6532120 39 5.16e-05 TGATCGGCCG GCCGCACA TGAAACGCGC chrI:3873906-3873986 61 5.16e-05 gaataggcgc gccgcaca ttgcAAAACT chrIV:11474247-11474327 20 7.44e-05 ACACGGCAAT GCCGCCGG AGAGATACAA chrX:6164792-6164872 57 7.44e-05 aggagagcaa gccgccgg agagcaccag chrII:8547191-8547271 36 8.40e-05 CTTATTTCGC GCCGCAAG TTTTGCAATG chrII:7708736-7708816 43 9.18e-05 TTGCAATTCT CCCGCACG GAGTCACACG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCGCASG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:2768802-2768882 7.9e-06 51_[+5]_21 chrI:9249408-9249488 7.9e-06 25_[+5]_47 chrI:14708072-14708152 7.9e-06 71_[+5]_1 chrI:14721602-14721682 7.9e-06 41_[+5]_31 chrIII:3664402-3664482 7.9e-06 39_[+5]_33 chrV:7231017-7231097 7.9e-06 41_[+5]_31 chrIV:16400934-16401014 1.6e-05 23_[+5]_49 chrIII:1824674-1824754 1.6e-05 51_[+5]_21 chrV:11782886-11782966 3.2e-05 40_[+5]_32 chrIV:7574028-7574108 3.2e-05 40_[+5]_32 chrII:11960798-11960878 3.2e-05 28_[+5]_44 chrX:15742035-15742115 3.2e-05 70_[+5]_2 chrIV:6756639-6756719 4.2e-05 39_[+5]_33 chrX:9296725-9296805 4.2e-05 54_[+5]_18 chrIII:13268985-13269065 5.2e-05 1_[+5]_71 chrI:6532040-6532120 5.2e-05 38_[+5]_34 chrI:3873906-3873986 5.2e-05 60_[+5]_12 chrIV:11474247-11474327 7.4e-05 19_[+5]_53 chrX:6164792-6164872 7.4e-05 56_[+5]_16 chrII:8547191-8547271 8.4e-05 35_[+5]_37 chrII:7708736-7708816 9.2e-05 42_[+5]_30 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCGCASG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCCGCASG width=8 seqs=21 chrIII:2768802-2768882 ( 52) GCCGCACG 1 chrI:9249408-9249488 ( 26) GCCGCACG 1 chrI:14708072-14708152 ( 72) GCCGCACG 1 chrI:14721602-14721682 ( 42) GCCGCACG 1 chrIII:3664402-3664482 ( 40) GCCGCACG 1 chrV:7231017-7231097 ( 42) GCCGCACG 1 chrIV:16400934-16401014 ( 24) GCCGCAGG 1 chrIII:1824674-1824754 ( 52) GCCGCAGG 1 chrV:11782886-11782966 ( 41) GGCGCAGG 1 chrIV:7574028-7574108 ( 41) GGCGCAGG 1 chrII:11960798-11960878 ( 29) GGCGCAGG 1 chrX:15742035-15742115 ( 71) GGCGCAGG 1 chrIV:6756639-6756719 ( 40) GCCGCATG 1 chrX:9296725-9296805 ( 55) GCCGCATG 1 chrIII:13268985-13269065 ( 2) GCCGCACA 1 chrI:6532040-6532120 ( 39) GCCGCACA 1 chrI:3873906-3873986 ( 61) GCCGCACA 1 chrIV:11474247-11474327 ( 20) GCCGCCGG 1 chrX:6164792-6164872 ( 57) GCCGCCGG 1 chrII:8547191-8547271 ( 36) GCCGCAAG 1 chrII:7708736-7708816 ( 43) CCCGCACG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCGCASG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.7488 E= 5.7e-001 -1104 -223 207 -1104 -1104 186 -26 -1104 -1104 216 -1104 -1104 -1104 -1104 214 -1104 -1104 216 -1104 -1104 174 -123 -1104 -1104 -250 109 74 -155 -92 -1104 191 -1104 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCGCASG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 21 E= 5.7e-001 0.000000 0.047619 0.952381 0.000000 0.000000 0.809524 0.190476 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.904762 0.095238 0.000000 0.000000 0.047619 0.476190 0.380952 0.095238 0.142857 0.000000 0.857143 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCGCASG MEME-5 regular expression -------------------------------------------------------------------------------- GCCGCA[CG]G -------------------------------------------------------------------------------- Time 20.44 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:4521018-4521098 2.18e-01 80 chrM:13599-13679 9.99e-01 80 chrM:13145-13225 8.38e-01 80 chrM:509-589 4.33e-01 80 chrM:6589-6669 3.38e-01 80 chrM:4021-4101 7.02e-01 80 chrM:10474-10554 9.74e-01 80 chrM:2642-2722 5.84e-01 80 chrII:4521877-4521957 8.54e-02 80 chrII:4522117-4522197 6.53e-01 80 chrM:5563-5643 9.76e-01 80 chrM:7595-7675 9.19e-01 80 chrM:9672-9752 9.69e-01 80 chrM:11640-11720 6.96e-01 80 chrM:5768-5848 7.31e-01 80 chrM:11439-11519 4.24e-01 80 chrIV:10351072-10351152 5.23e-01 80 chrM:12286-12366 9.18e-01 80 chrM:6895-6975 9.32e-01 80 chrII:5399413-5399493 5.00e-02 80 chrM:1334-1414 8.91e-01 80 chrV:3587821-3587901 5.10e-05 4_[+2(1.80e-05)]_4_[+5(5.16e-05)]_\ 56 chrII:4521227-4521307 5.98e-01 80 chrV:18722701-18722781 5.03e-01 80 chrV:7231017-7231097 1.23e-04 16_[+4(9.75e-05)]_17_[+5(7.91e-06)]_\ 31 chrIII:3664402-3664482 3.98e-07 18_[+1(4.36e-05)]_1_[+2(1.80e-05)]_\ 4_[+5(7.91e-06)]_33 chrI:14606031-14606111 1.69e-04 25_[+1(5.22e-05)]_18_[+4(7.82e-06)]_\ 21 chrIII:13325587-13325667 7.30e-01 80 chrIII:13779075-13779155 3.34e-01 80 chrV:9583092-9583172 4.56e-03 26_[+2(6.21e-05)]_46 chrM:3589-3669 9.69e-01 80 chrX:15377874-15377954 8.10e-01 80 chrM:7794-7874 8.44e-01 80 chrI:3873906-3873986 5.85e-04 60_[+5(5.16e-05)]_12 chrIII:13560237-13560317 8.50e-01 80 chrX:6166276-6166356 3.34e-01 80 chrX:9296725-9296805 7.27e-04 35_[+4(3.16e-05)]_11_[+5(4.23e-05)]_\ 18 chrX:7780776-7780856 4.73e-01 80 chrII:4238055-4238135 1.14e-05 45_[+1(2.87e-05)]_15_[+4(7.82e-06)]_\ 4 chrIII:3175130-3175210 1.51e-02 80 chrM:2230-2310 4.55e-01 80 chrX:8156157-8156237 3.60e-01 80 chrII:7708736-7708816 7.36e-05 17_[+1(2.87e-05)]_5_[+2(6.21e-05)]_\ 4_[+5(9.18e-05)]_30 chrM:4751-4831 7.94e-01 80 chrM:9269-9349 9.96e-01 80 chrX:6145165-6145245 7.68e-01 80 chrIII:3916747-3916827 6.47e-03 80 chrI:1175816-1175896 1.53e-03 37_[+1(4.36e-05)]_35 chrIII:1824674-1824754 4.45e-05 24_[+1(4.36e-05)]_19_[+5(1.60e-05)]_\ 21 chrI:4633635-4633715 2.47e-02 80 chrV:13176443-13176523 3.83e-01 80 chrIII:4805509-4805589 3.00e-01 80 chrV:4731530-4731610 4.27e-03 69_[+1(2.87e-05)]_3 chrV:13962148-13962228 5.11e-03 57_[+1(6.83e-06)]_15 chrX:16997153-16997233 9.24e-01 80 chrV:11239324-11239404 3.37e-06 43_[+1(5.22e-05)]_3_[+2(6.21e-05)]_\ 4_[+5(4.23e-05)]_6 chrI:14721602-14721682 6.70e-07 20_[+1(6.83e-06)]_1_[+2(1.80e-05)]_\ 4_[+5(7.91e-06)]_31 chrX:14115659-14115739 7.47e-03 15_[+4(3.16e-05)]_57 chrI:14708072-14708152 1.99e-06 53_[+4(7.82e-06)]_10_[+5(7.91e-06)]_\ 1 chrX:7985843-7985923 8.10e-02 80 chrIII:8768032-8768112 7.40e-02 80 chrX:6167974-6168054 8.13e-01 80 chrIII:9664653-9664733 9.69e-01 80 chrIII:11997784-11997864 8.46e-01 80 chrX:3772586-3772666 5.10e-01 80 chrX:6164792-6164872 6.65e-02 56_[+5(7.44e-05)]_16 chrIII:6961279-6961359 8.39e-02 80 chrII:10991254-10991334 9.99e-01 80 chrM:1093-1173 8.49e-01 80 chrIV:16505892-16505972 6.28e-02 40_[+4(3.16e-05)]_32 chrI:10435828-10435908 8.32e-01 80 chrIII:10432249-10432329 3.39e-01 80 chrIII:4568708-4568788 1.27e-02 80 chrII:7255852-7255932 3.21e-02 33_[+2(1.80e-05)]_39 chrIV:9316202-9316282 3.28e-05 17_[+1(4.36e-05)]_47_[+4(1.41e-05)] chrIV:620492-620572 8.87e-03 43_[+3(1.15e-05)]_29 chrII:6847958-6848038 7.64e-01 80 chrI:1444157-1444237 1.04e-06 14_[+4(1.41e-05)]_12_[+1(2.87e-05)]_\ 3_[+2(1.80e-05)]_27 chrII:7810765-7810845 1.78e-01 80 chrX:13653760-13653840 3.59e-02 80 chrIII:4171148-4171228 7.95e-05 15_[+1(6.83e-06)]_39_[+4(7.82e-06)]_\ 10 chrIII:1617110-1617190 8.21e-01 80 chrV:11113307-11113387 7.20e-03 66_[+2(1.80e-05)]_6 chrV:12780368-12780448 9.05e-04 32_[+3(9.07e-05)]_40 chrV:1821480-1821560 7.62e-01 80 chrV:6227422-6227502 2.42e-01 80 chrI:9249408-9249488 2.32e-06 6_[+4(7.82e-06)]_11_[+5(7.91e-06)]_\ 27_[+2(6.21e-05)]_12 chrIV:16863574-16863654 3.32e-02 50_[+2(1.80e-05)]_1_[+2(1.80e-05)]_\ 13 chrIV:14013767-14013847 2.28e-03 52_[+3(1.15e-05)]_20 chrIII:5555084-5555164 2.63e-04 28_[+1(5.22e-05)]_5_[+2(7.68e-05)]_\ 3_[+1(2.87e-05)]_20 chrI:1958493-1958573 1.61e-02 63_[+2(7.68e-05)]_9 chrI:11505503-11505583 3.41e-01 80 chrX:6286325-6286405 1.07e-02 48_[+3(7.63e-05)]_24 chrX:4789076-4789156 7.67e-01 80 chrM:10921-11001 9.24e-01 80 chrIV:3233045-3233125 1.19e-03 38_[+4(3.80e-05)]_34 chrI:14737431-14737511 3.57e-02 80 chrIV:3552203-3552283 1.14e-02 [+3(1.15e-05)]_72 chrIII:1601554-1601634 6.18e-02 80 chrIII:9629902-9629982 3.93e-02 64_[+2(6.21e-05)]_8 chrV:18723646-18723726 9.39e-01 80 chrIV:16400934-16401014 9.28e-05 14_[+3(7.63e-05)]_1_[+5(1.60e-05)]_\ 49 chrX:17181355-17181435 3.63e-01 80 chrIV:11026053-11026133 9.47e-01 80 chrV:11610636-11610716 9.73e-04 22_[+1(5.22e-05)]_50 chrX:16604679-16604759 1.10e-03 42_[+4(3.80e-05)]_5_[+3(6.15e-05)]_\ 17 chrIV:11310730-11310810 4.94e-02 62_[+1(5.22e-05)]_10 chrIII:8106587-8106667 1.42e-01 80 chrI:4132312-4132392 3.14e-04 6_[+4(7.82e-06)]_7_[+1(4.36e-05)]_\ 51 chrV:6785279-6785359 2.86e-02 22_[+2(6.21e-05)]_50 chrI:6532040-6532120 6.96e-02 38_[+5(5.16e-05)]_34 chrIII:10624799-10624879 9.71e-01 80 chrX:8971466-8971546 1.32e-01 80 chrIV:9477753-9477833 3.01e-01 80 chrIV:9191389-9191469 2.37e-01 18_[+2(6.21e-05)]_54 chrX:13511952-13512032 5.92e-02 32_[+3(6.15e-05)]_40 chrIII:9861633-9861713 3.72e-02 80 chrV:8631370-8631450 9.07e-01 80 chrX:16928264-16928344 1.79e-05 21_[+3(1.15e-05)]_2_[+5(5.82e-05)]_\ 41 chrX:12563806-12563886 1.38e-02 80 chrV:12291747-12291827 9.68e-02 80 chrX:1880820-1880900 1.13e-02 11_[+3(1.15e-05)]_61 chrIV:11692323-11692403 9.51e-01 80 chrIII:13268985-13269065 8.18e-06 1_[+5(5.16e-05)]_44_[+4(7.10e-05)]_\ 19 chrV:53435-53515 5.85e-02 80 chrIII:1080623-1080703 6.97e-01 80 chrIII:2768802-2768882 2.52e-04 39_[+2(6.21e-05)]_4_[+5(7.91e-06)]_\ 21 chrX:13121282-13121362 2.61e-03 3_[+5(5.82e-05)]_69 chrII:12798828-12798908 2.77e-02 54_[+4(7.73e-05)]_18 chrIV:143999-144079 1.18e-01 80 chrII:5292262-5292342 6.86e-01 80 chrI:5986276-5986356 2.93e-02 66_[+2(7.68e-05)]_6 chrV:12596906-12596986 2.27e-01 80 chrX:12171870-12171950 3.33e-01 80 chrIII:5295068-5295148 5.21e-01 80 chrX:15297399-15297479 9.73e-02 80 chrIV:13386228-13386308 3.32e-03 80 chrV:15551767-15551847 5.29e-04 33_[+4(3.80e-05)]_5_[+3(6.15e-05)]_\ 26 chrIII:10461274-10461354 2.87e-04 22_[+1(6.83e-06)]_50 chrI:14113245-14113325 3.85e-02 80 chrX:10132773-10132853 7.90e-01 80 chrIII:5014258-5014338 9.46e-01 80 chrIII:8678501-8678581 1.15e-02 80 chrIII:8937676-8937756 5.62e-03 16_[+4(7.10e-05)]_56 chrX:10963807-10963887 8.68e-01 80 chrIV:8252999-8253079 1.23e-01 80 chrIV:16398256-16398336 4.78e-01 80 chrIV:8375568-8375648 8.69e-01 80 chrIII:4470865-4470945 2.15e-01 35_[+3(9.07e-05)]_37 chrV:7060387-7060467 5.43e-01 80 chrX:9467655-9467735 2.63e-01 80 chrII:12494743-12494823 7.39e-03 52_[+3(4.71e-05)]_20 chrII:7184083-7184163 1.31e-03 30_[+1(2.87e-05)]_42 chrI:4297991-4298071 2.08e-01 80 chrII:6047695-6047775 2.64e-01 72_[+2(6.21e-05)] chrV:19643192-19643272 4.44e-02 80 chrIV:11549839-11549919 6.82e-02 35_[+3(1.15e-05)]_37 chrX:5707997-5708077 1.77e-01 80 chrX:6593587-6593667 2.61e-01 80 chrIII:6158724-6158804 3.13e-01 80 chrI:8259554-8259634 3.37e-02 80 chrX:489893-489973 7.62e-01 80 chrIII:5602195-5602275 1.53e-01 80 chrIII:12874906-12874986 7.92e-01 80 chrII:11484749-11484829 3.78e-03 40_[+5(2.41e-05)]_32 chrV:15873974-15874054 7.19e-01 80 chrIII:11371440-11371520 1.51e-01 80 chrIV:6556774-6556854 1.10e-01 80 chrIV:7039571-7039651 1.24e-02 64_[+2(1.80e-05)]_8 chrII:8547191-8547271 4.80e-04 35_[+5(8.40e-05)]_[+2(6.21e-05)]_29 chrX:12661087-12661167 3.99e-02 80 chrII:5105196-5105276 1.20e-03 34_[+1(7.74e-05)]_38 chrX:2227185-2227265 1.10e-03 7_[+4(3.80e-05)]_5_[+3(6.15e-05)]_\ 52 chrIII:8109625-8109705 4.65e-02 80 chrX:9637903-9637983 6.65e-02 80 chrV:6889063-6889143 8.91e-01 80 chrI:9267065-9267145 3.61e-02 58_[+1(9.38e-05)]_14 chrIV:390435-390515 1.72e-04 63_[+1(1.35e-05)]_9 chrII:6853149-6853229 8.41e-02 80 chrIV:6756639-6756719 9.64e-07 39_[+5(4.23e-05)]_21_[+4(7.82e-06)]_\ 4 chrIV:2408523-2408603 2.46e-02 80 chrII:10840232-10840312 2.54e-02 17_[+1(7.74e-05)]_55 chrV:9503482-9503562 5.30e-01 80 chrX:11757908-11757988 3.61e-01 80 chrX:15742035-15742115 1.91e-02 70_[+5(3.24e-05)]_2 chrII:5032797-5032877 6.34e-03 27_[+3(4.71e-05)]_45 chrX:2549482-2549562 3.12e-03 80 chrX:6292255-6292335 2.56e-05 37_[+3(1.15e-05)]_35 chrIV:14034049-14034129 8.38e-01 80 chrX:16591010-16591090 6.95e-01 80 chrX:12458199-12458279 3.66e-01 80 chrX:13306990-13307070 5.30e-01 80 chrX:3970151-3970231 3.54e-01 80 chrX:16634759-16634839 5.71e-01 80 chrI:12198642-12198722 9.27e-04 14_[+3(3.77e-05)]_16_[+2(6.21e-05)]_\ 34 chrX:12106160-12106240 3.19e-03 1_[+3(1.15e-05)]_71 chrI:6781827-6781907 6.25e-03 80 chrV:11314172-11314252 5.11e-01 80 chrX:2613258-2613338 5.54e-04 36_[+3(7.63e-05)]_36 chrII:11960798-11960878 5.53e-04 28_[+5(3.24e-05)]_10_[+1(6.06e-05)]_\ 26 chrX:12665269-12665349 1.99e-02 23_[+3(3.77e-05)]_49 chrI:6082774-6082854 1.49e-02 50_[+1(7.74e-05)]_22 chrI:2514331-2514411 1.65e-02 80 chrV:12303597-12303677 8.48e-04 27_[+1(2.87e-05)]_33_[+3(4.71e-05)]_\ 4 chrII:3519120-3519200 6.76e-01 80 chrIV:7574028-7574108 3.17e-02 40_[+5(3.24e-05)]_32 chrX:9743628-9743708 1.65e-01 13_[+3(7.63e-05)]_59 chrV:12002016-12002096 3.76e-01 80 chrX:3697639-3697719 2.84e-01 80 chrI:5706920-5707000 3.61e-01 80 chrX:5085601-5085681 1.60e-02 35_[+3(9.07e-05)]_37 chrX:13665605-13665685 7.57e-04 49_[+3(3.77e-05)]_23 chrX:11605871-11605951 4.31e-01 80 chrII:13834532-13834612 5.22e-01 80 chrX:6207773-6207853 5.39e-01 80 chrV:8500537-8500617 1.90e-01 80 chrV:9970286-9970366 7.75e-03 28_[+1(2.87e-05)]_44 chrV:10808033-10808113 1.27e-03 57_[+4(9.75e-05)]_15 chrIV:1659161-1659241 4.57e-01 80 chrIII:6972029-6972109 3.90e-02 80 chrII:8075508-8075588 1.90e-01 80 chrX:14063963-14064043 3.13e-01 80 chrII:5782067-5782147 3.34e-01 80 chrIV:8927200-8927280 5.83e-04 54_[+3(7.63e-05)]_18 chrII:14497011-14497091 3.58e-05 69_[+2(3.97e-05)]_3 chrV:13003516-13003596 6.10e-04 7_[+3(6.15e-05)]_65 chrX:8836149-8836229 3.88e-04 16_[+3(7.63e-05)]_56 chrX:8404472-8404552 2.99e-01 80 chrI:6105813-6105893 4.60e-01 80 chrIV:11474247-11474327 2.81e-02 19_[+5(7.44e-05)]_53 chrII:15166008-15166088 4.58e-01 80 chrX:1379648-1379728 6.43e-01 80 chrV:11782886-11782966 5.77e-03 40_[+5(3.24e-05)]_32 chrII:8561449-8561529 9.73e-01 80 chrII:14804624-14804704 9.36e-01 80 chrX:14525789-14525869 5.36e-01 80 chrIII:13062492-13062572 4.96e-01 80 chrI:8224387-8224467 7.62e-02 80 chrIV:17278530-17278610 1.16e-01 80 chrX:9465883-9465963 5.16e-01 80 chrX:3036185-3036265 6.42e-03 31_[+3(7.63e-05)]_41 chrX:5429501-5429581 3.04e-01 80 chrI:1446960-1447040 2.21e-04 12_[+3(1.15e-05)]_60 chrIV:5967197-5967277 1.51e-02 80 chrI:6212781-6212861 1.58e-01 80 chrX:13046440-13046520 8.35e-01 80 chrII:1320538-1320618 1.65e-02 80 chrI:4172209-4172289 1.72e-01 37_[+2(3.97e-05)]_35 chrII:255295-255375 8.36e-03 80 chrX:410356-410436 7.86e-02 80 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c28n01.farnam.hpc.yale.internal ********************************************************************************