******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/worm/fasta/RankLinear2.0_40/npax-4.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrV:265394-265474 1.0000 80 chrI:933476-933556 1.0000 80 chrM:5895-5975 1.0000 80 chrIII:3500025-3500105 1.0000 80 chrIII:931565-931645 1.0000 80 chrM:9091-9171 1.0000 80 chrV:265753-265833 1.0000 80 chrM:10796-10876 1.0000 80 chrM:2108-2188 1.0000 80 chrIII:13781077-13781157 1.0000 80 chrM:12364-12444 1.0000 80 chrM:1604-1684 1.0000 80 chrM:4641-4721 1.0000 80 chrIII:3664382-3664462 1.0000 80 chrM:7082-7162 1.0000 80 chrM:6096-6176 1.0000 80 chrIII:8650396-8650476 1.0000 80 chrIV:11071029-11071109 1.0000 80 chrII:7708753-7708833 1.0000 80 chrIII:3175131-3175211 1.0000 80 chrI:1068003-1068083 1.0000 80 chrX:9296782-9296862 1.0000 80 chrI:1415899-1415979 1.0000 80 chrIV:13549493-13549573 1.0000 80 chrX:5056376-5056456 1.0000 80 chrX:8603186-8603266 1.0000 80 chrV:7230999-7231079 1.0000 80 chrIII:12399821-12399901 1.0000 80 chrI:2487835-2487915 1.0000 80 chrX:12890225-12890305 1.0000 80 chrM:1205-1285 1.0000 80 chrII:6898231-6898311 1.0000 80 chrX:14115646-14115726 1.0000 80 chrIV:13788828-13788908 1.0000 80 chrIII:1122420-1122500 1.0000 80 chrIII:4426871-4426951 1.0000 80 chrV:5284759-5284839 1.0000 80 chrV:3587796-3587876 1.0000 80 chrI:4633639-4633719 1.0000 80 chrI:6532079-6532159 1.0000 80 chrV:18723521-18723601 1.0000 80 chrM:4851-4931 1.0000 80 chrI:12225419-12225499 1.0000 80 chrX:8638922-8639002 1.0000 80 chrI:14721598-14721678 1.0000 80 chrIII:535381-535461 1.0000 80 chrIII:8768052-8768132 1.0000 80 chrII:4238057-4238137 1.0000 80 chrX:5319333-5319413 1.0000 80 chrI:8530089-8530169 1.0000 80 chrII:14635379-14635459 1.0000 80 chrV:4731565-4731645 1.0000 80 chrX:16928296-16928376 1.0000 80 chrI:1823144-1823224 1.0000 80 chrIV:1388239-1388319 1.0000 80 chrIII:7729404-7729484 1.0000 80 chrI:4175949-4176029 1.0000 80 chrV:5284523-5284603 1.0000 80 chrX:8971599-8971679 1.0000 80 chrII:4372094-4372174 1.0000 80 chrIV:15289708-15289788 1.0000 80 chrI:1575625-1575705 1.0000 80 chrIII:1601601-1601681 1.0000 80 chrV:4615939-4616019 1.0000 80 chrIII:11093560-11093640 1.0000 80 chrIV:14576592-14576672 1.0000 80 chrI:11323342-11323422 1.0000 80 chrV:12510127-12510207 1.0000 80 chrV:13962151-13962231 1.0000 80 chrII:6565284-6565364 1.0000 80 chrI:14708086-14708166 1.0000 80 chrII:6248692-6248772 1.0000 80 chrIII:8106625-8106705 1.0000 80 chrV:2603066-2603146 1.0000 80 chrX:8646486-8646566 1.0000 80 chrV:11239375-11239455 1.0000 80 chrII:14063118-14063198 1.0000 80 chrI:7951850-7951930 1.0000 80 chrV:14524351-14524431 1.0000 80 chrI:9268956-9269036 1.0000 80 chrIV:12417919-12417999 1.0000 80 chrII:5836572-5836652 1.0000 80 chrIV:9191338-9191418 1.0000 80 chrV:15554109-15554189 1.0000 80 chrV:15551792-15551872 1.0000 80 chrIII:4568709-4568789 1.0000 80 chrI:1175857-1175937 1.0000 80 chrIII:3916773-3916853 1.0000 80 chrX:16602646-16602726 1.0000 80 chrV:12780417-12780497 1.0000 80 chrX:16298315-16298395 1.0000 80 chrI:6136592-6136672 1.0000 80 chrII:4791444-4791524 1.0000 80 chrIV:9477734-9477814 1.0000 80 chrIII:7030513-7030593 1.0000 80 chrX:5707995-5708075 1.0000 80 chrIV:16398372-16398452 1.0000 80 chrIV:11026160-11026240 1.0000 80 chrII:7001577-7001657 1.0000 80 chrIII:1202336-1202416 1.0000 80 chrII:9566185-9566265 1.0000 80 chrIII:4171143-4171223 1.0000 80 chrI:11505519-11505599 1.0000 80 chrI:3873929-3874009 1.0000 80 chrIV:9316266-9316346 1.0000 80 chrX:11935073-11935153 1.0000 80 chrV:19126069-19126149 1.0000 80 chrI:6091155-6091235 1.0000 80 chrIV:3552123-3552203 1.0000 80 chrX:12367650-12367730 1.0000 80 chrX:14804838-14804918 1.0000 80 chrI:14737450-14737530 1.0000 80 chrIV:620493-620573 1.0000 80 chrII:5293442-5293522 1.0000 80 chrIII:5555100-5555180 1.0000 80 chrI:1958516-1958596 1.0000 80 chrIV:796786-796866 1.0000 80 chrIII:640575-640655 1.0000 80 chrI:2410111-2410191 1.0000 80 chrV:53461-53541 1.0000 80 chrIII:2597240-2597320 1.0000 80 chrX:10963840-10963920 1.0000 80 chrIII:6551552-6551632 1.0000 80 chrV:6888972-6889052 1.0000 80 chrII:14528336-14528416 1.0000 80 chrX:13511938-13512018 1.0000 80 chrIII:11792788-11792868 1.0000 80 chrX:9637794-9637874 1.0000 80 chrX:4444202-4444282 1.0000 80 chrX:1880833-1880913 1.0000 80 chrIII:11119457-11119537 1.0000 80 chrX:6867827-6867907 1.0000 80 chrII:3521497-3521577 1.0000 80 chrIII:6158744-6158824 1.0000 80 chrV:11113354-11113434 1.0000 80 chrIII:1604631-1604711 1.0000 80 chrX:6903111-6903191 1.0000 80 chrIV:13386181-13386261 1.0000 80 chrX:8386250-8386330 1.0000 80 chrIII:6887716-6887796 1.0000 80 chrIII:1424524-1424604 1.0000 80 chrV:7060497-7060577 1.0000 80 chrX:13264720-13264800 1.0000 80 chrX:6208046-6208126 1.0000 80 chrIII:5305854-5305934 1.0000 80 chrX:15742047-15742127 1.0000 80 chrIV:16776103-16776183 1.0000 80 chrII:14143946-14144026 1.0000 80 chrIII:4470891-4470971 1.0000 80 chrI:13310336-13310416 1.0000 80 chrX:6593556-6593636 1.0000 80 chrIII:11371405-11371485 1.0000 80 chrI:13161057-13161137 1.0000 80 chrIV:16946896-16946976 1.0000 80 chrIII:5295023-5295103 1.0000 80 chrII:8547132-8547212 1.0000 80 chrII:6913447-6913527 1.0000 80 chrIV:17087567-17087647 1.0000 80 chrV:11610640-11610720 1.0000 80 chrI:1416102-1416182 1.0000 80 chrIV:1745604-1745684 1.0000 80 chrX:1858785-1858865 1.0000 80 chrX:12563763-12563843 1.0000 80 chrIII:10624735-10624815 1.0000 80 chrV:20694145-20694225 1.0000 80 chrII:13199983-13200063 1.0000 80 chrIV:3524860-3524940 1.0000 80 chrX:12670405-12670485 1.0000 80 chrIV:322704-322784 1.0000 80 chrV:1003902-1003982 1.0000 80 chrX:1837857-1837937 1.0000 80 chrX:15297446-15297526 1.0000 80 chrX:3697696-3697776 1.0000 80 chrIV:11549872-11549952 1.0000 80 chrV:9503539-9503619 1.0000 80 chrIV:143959-144039 1.0000 80 chrI:11517282-11517362 1.0000 80 chrX:6292307-6292387 1.0000 80 chrI:5986341-5986421 1.0000 80 chrI:13514350-13514430 1.0000 80 chrIII:11317378-11317458 1.0000 80 chrIV:8253004-8253084 1.0000 80 chrII:9774817-9774897 1.0000 80 chrIII:5602211-5602291 1.0000 80 chrII:8107261-8107341 1.0000 80 chrII:5292434-5292514 1.0000 80 chrV:12596922-12597002 1.0000 80 chrIII:8937718-8937798 1.0000 80 chrII:12494714-12494794 1.0000 80 chrIII:9861648-9861728 1.0000 80 chrI:14113243-14113323 1.0000 80 chrI:8223205-8223285 1.0000 80 chrIII:4963097-4963177 1.0000 80 chrX:12106144-12106224 1.0000 80 chrX:489882-489962 1.0000 80 chrII:7200205-7200285 1.0000 80 chrI:5176405-5176485 1.0000 80 chrI:2935711-2935791 1.0000 80 chrII:5105241-5105321 1.0000 80 chrV:19643190-19643270 1.0000 80 chrIII:2768808-2768888 1.0000 80 chrV:9970270-9970350 1.0000 80 chrII:11484766-11484846 1.0000 80 chrI:2514352-2514432 1.0000 80 chrX:13121280-13121360 1.0000 80 chrX:1379654-1379734 1.0000 80 chrI:9665173-9665253 1.0000 80 chrIII:10461266-10461346 1.0000 80 chrV:9175398-9175478 1.0000 80 chrIV:8375563-8375643 1.0000 80 chrII:14059931-14060011 1.0000 80 chrIV:12594655-12594735 1.0000 80 chrI:8259530-8259610 1.0000 80 chrIII:8678550-8678630 1.0000 80 chrX:353258-353338 1.0000 80 chrX:3371442-3371522 1.0000 80 chrV:13003486-13003566 1.0000 80 chrI:13297657-13297737 1.0000 80 chrV:12291753-12291833 1.0000 80 chrIII:502718-502798 1.0000 80 chrI:6105724-6105804 1.0000 80 chrIII:10989959-10990039 1.0000 80 chrI:8024773-8024853 1.0000 80 chrIII:13268966-13269046 1.0000 80 chrX:13306997-13307077 1.0000 80 chrV:15873938-15874018 1.0000 80 chrX:16634850-16634930 1.0000 80 chrII:5032780-5032860 1.0000 80 chrIV:11474255-11474335 1.0000 80 chrX:5165184-5165264 1.0000 80 chrIV:7574034-7574114 1.0000 80 chrI:12198536-12198616 1.0000 80 chrX:9467751-9467831 1.0000 80 chrV:5791045-5791125 1.0000 80 chrI:5706982-5707062 1.0000 80 chrIV:390438-390518 1.0000 80 chrIV:14034072-14034152 1.0000 80 chrIII:4689759-4689839 1.0000 80 chrIII:12874844-12874924 1.0000 80 chrX:6371334-6371414 1.0000 80 chrX:2227233-2227313 1.0000 80 chrII:7184067-7184147 1.0000 80 chrV:12002162-12002242 1.0000 80 chrX:12665194-12665274 1.0000 80 chrV:16592276-16592356 1.0000 80 chrI:9988945-9989025 1.0000 80 chrIV:7039761-7039841 1.0000 80 chrX:3970139-3970219 1.0000 80 chrX:13448871-13448951 1.0000 80 chrX:11757814-11757894 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/worm/inference_raw/MEME/RankLinear2.0_40_npax-4/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/worm/fasta/RankLinear2.0_40/npax-4.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.257 C 0.239 G 0.244 T 0.261 Background letter frequencies (from file dataset with add-one prior applied): A 0.257 C 0.239 G 0.244 T 0.261 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF TCGAACCC MEME-1 width = 8 sites = 51 llr = 430 E-value = 1.7e-020 ******************************************************************************** -------------------------------------------------------------------------------- Motif TCGAACCC MEME-1 Description -------------------------------------------------------------------------------- Simplified A :::96::1 pos.-specific C :9:118a8 probability G ::a:1::: matrix T a1::22:: bits 2.1 * * 1.9 * * * 1.7 *** * 1.4 **** * Relative 1.2 **** *** Entropy 1.0 **** *** (12.2 bits) 0.8 **** *** 0.6 **** *** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TCGAACCC consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCGAACCC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:11757814-11757894 32 1.37e-05 CGAGTGGGGT TCGAACCC ACGAGGTGTT chrI:13297657-13297737 31 1.37e-05 AATGCGGGGC TCGAACCC GCGACAACCA chrX:353258-353338 12 1.37e-05 AGAGTGGGAT TCGAACCC ACGCCCCCGA chrV:19643190-19643270 1 1.37e-05 . TCGAACCC GGAAGCTGTG chrX:12106144-12106224 18 1.37e-05 AATGCGGGGC TCGAACCC GCGACAACCA chrIV:11549872-11549952 3 1.37e-05 AA TCGAACCC GTGATGCATA chrX:15742047-15742127 68 1.37e-05 GGGCGCAGGT TCGAACCC TGCGG chrIII:6887716-6887796 27 1.37e-05 CCTAGGGGAC TCGAACCC CTGACCTTAA chrX:6903111-6903191 18 1.37e-05 AGAGTGGGAT TCGAACCC ACGCCCCCGA chrIV:620493-620573 43 1.37e-05 GGTCGCCGGT TCGAACCC GGCGAGGACC chrX:12367650-12367730 7 1.37e-05 CGGGAA TCGAACCC GGGCCGCGTG chrIV:14576592-14576672 45 1.37e-05 TCGGGGGGAA TCGAACCC CCGTCGAATG chrI:8530089-8530169 54 1.37e-05 TTGCGGGGAA TCGAACCC CGGCCTTATG chrIV:3524860-3524940 13 2.87e-05 GATTGCAGGT TCGAATCC TGCCGTGGTC chrX:8971599-8971679 64 2.87e-05 CCGCGTAGGT TCGAATCC TGCTGACTG chrIII:535381-535461 66 2.87e-05 GGTCACTGGT TCGAATCC GGTTCGA chrX:3970139-3970219 10 4.26e-05 GTCCCGGGA TCGATCCC CGGTCCGGCC chrI:2410111-2410191 67 4.26e-05 GCGCGCTGGT TCGATCCC CACCAA chrII:5032780-5032860 45 5.54e-05 GGTCGCAGGT TCGACCCC TGCTGGCGGC chrIII:502718-502798 64 5.54e-05 CGACCGTTGT TCGACCCC CACGCAGTG chrII:6248692-6248772 10 5.54e-05 AATGTAGGT TCGACCCC CGCTTTACTG chrX:9467751-9467831 9 8.12e-05 GGGACCTC TCGCACCC AAAGCGAGAA chrI:13161057-13161137 58 8.12e-05 GGTCGGTGGT TCGAGCCC GCCCGAGATC chrX:8386250-8386330 8 8.12e-05 TGCAGGT TCGAGCCC TGCCTGGGTC chrX:1880833-1880913 15 8.12e-05 CCGGGACCTC TCGCACCC GAAGCGAGAA chrX:13511938-13512018 63 8.12e-05 CCGGGACCTC TCGCACCC AAAGCGAGAA chrI:6136592-6136672 59 8.12e-05 TGTCGCGGGT TCGAGCCC CGCATTGGGC chrI:9268956-9269036 3 8.12e-05 TC TCGCACCC TAAGCGAGAA chrIII:8650396-8650476 16 8.12e-05 CCGGGACCTC TCGCACCC GAAGCGAGAA chrI:6105724-6105804 38 9.60e-05 CGGCTGGGGG TCGAACCA GCGACCCGCT chrIII:10624735-10624815 22 9.60e-05 CATGCTGGAA TCGAACCA GCGACCTTCT chrII:3521497-3521577 5 9.60e-05 GGAA TCGAACCA GCGTCGCCAC chrIII:7030513-7030593 59 9.60e-05 CATGCTGGAA TCGAACCA GCGACCTTCT chrX:16602646-16602726 3 9.60e-05 GG TCGAACCA TTAACCCCCC chrV:13003486-13003566 38 1.26e-04 GTATGGGGAA TTGAACCC CAGCCCTCTC chrX:489882-489962 1 1.26e-04 . TTGAACCC GGGTCTCGCA chrIV:16776103-16776183 38 1.26e-04 CGACGGGGGT TCGATTCC CCCCGAACGC chrIII:1424524-1424604 20 1.26e-04 CGACGGGGGT TCGATTCC CCCCGAACGC chrX:9637794-9637874 73 1.26e-04 GTATGGGGAA TTGAACCC chrX:10963840-10963920 41 1.26e-04 CGACGGGGGT TCGATTCC CCCCGAACGC chrII:5293442-5293522 63 1.26e-04 AGGCCGGGGT TCGATTCC CCGCAACGGA chrV:15551792-15551872 22 1.26e-04 cggccgggaa ttgaaccc gggtctcgca chrX:8646486-8646566 47 1.26e-04 CGGCCCGGGT TCGATTCC CGGCATGGGA chrII:6898231-6898311 16 1.26e-04 CGGCCCGGGT TCGATTCC CGGCATGGGA chrX:6371334-6371414 70 1.40e-04 GGTAGCGCGT TCGACTCC AGA chrIV:15289708-15289788 21 1.40e-04 GGTAGCGCGT TCGACTCC AGATCGAAAG chrIII:4470891-4470971 10 1.83e-04 CGGCAGGAC TCGAACCT GCAATCCCCA chrIV:12417919-12417999 22 1.83e-04 ACGGCAGGAT TCGAACCT GCAATCTTCT chrII:6565284-6565364 18 1.83e-04 GGTCAGGGGT TCGAGTCC CCTAGGTGGC chrI:12225419-12225499 22 2.27e-04 GCGAGTGGTT TCGATCCA CCGACCTCTG chrI:12198536-12198616 8 2.97e-04 ggcactt tcgcgccc tcccccactc -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCGAACCC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:11757814-11757894 1.4e-05 31_[+1]_41 chrI:13297657-13297737 1.4e-05 30_[+1]_42 chrX:353258-353338 1.4e-05 11_[+1]_61 chrV:19643190-19643270 1.4e-05 [+1]_72 chrX:12106144-12106224 1.4e-05 17_[+1]_55 chrIV:11549872-11549952 1.4e-05 2_[+1]_70 chrX:15742047-15742127 1.4e-05 67_[+1]_5 chrIII:6887716-6887796 1.4e-05 26_[+1]_46 chrX:6903111-6903191 1.4e-05 17_[+1]_55 chrIV:620493-620573 1.4e-05 42_[+1]_30 chrX:12367650-12367730 1.4e-05 6_[+1]_66 chrIV:14576592-14576672 1.4e-05 44_[+1]_28 chrI:8530089-8530169 1.4e-05 53_[+1]_19 chrIV:3524860-3524940 2.9e-05 12_[+1]_60 chrX:8971599-8971679 2.9e-05 63_[+1]_9 chrIII:535381-535461 2.9e-05 65_[+1]_7 chrX:3970139-3970219 4.3e-05 9_[+1]_63 chrI:2410111-2410191 4.3e-05 66_[+1]_6 chrII:5032780-5032860 5.5e-05 44_[+1]_28 chrIII:502718-502798 5.5e-05 63_[+1]_9 chrII:6248692-6248772 5.5e-05 9_[+1]_63 chrX:9467751-9467831 8.1e-05 8_[+1]_64 chrI:13161057-13161137 8.1e-05 57_[+1]_15 chrX:8386250-8386330 8.1e-05 7_[+1]_65 chrX:1880833-1880913 8.1e-05 14_[+1]_58 chrX:13511938-13512018 8.1e-05 62_[+1]_10 chrI:6136592-6136672 8.1e-05 58_[+1]_14 chrI:9268956-9269036 8.1e-05 2_[+1]_70 chrIII:8650396-8650476 8.1e-05 15_[+1]_57 chrI:6105724-6105804 9.6e-05 37_[+1]_35 chrIII:10624735-10624815 9.6e-05 21_[+1]_51 chrII:3521497-3521577 9.6e-05 4_[+1]_68 chrIII:7030513-7030593 9.6e-05 58_[+1]_14 chrX:16602646-16602726 9.6e-05 2_[+1]_70 chrV:13003486-13003566 0.00013 37_[+1]_35 chrX:489882-489962 0.00013 [+1]_72 chrIV:16776103-16776183 0.00013 37_[+1]_35 chrIII:1424524-1424604 0.00013 19_[+1]_53 chrX:9637794-9637874 0.00013 72_[+1] chrX:10963840-10963920 0.00013 40_[+1]_32 chrII:5293442-5293522 0.00013 62_[+1]_10 chrV:15551792-15551872 0.00013 21_[+1]_51 chrX:8646486-8646566 0.00013 46_[+1]_26 chrII:6898231-6898311 0.00013 15_[+1]_57 chrX:6371334-6371414 0.00014 69_[+1]_3 chrIV:15289708-15289788 0.00014 20_[+1]_52 chrIII:4470891-4470971 0.00018 9_[+1]_63 chrIV:12417919-12417999 0.00018 21_[+1]_51 chrII:6565284-6565364 0.00018 17_[+1]_55 chrI:12225419-12225499 0.00023 21_[+1]_51 chrI:12198536-12198616 0.0003 7_[+1]_65 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCGAACCC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TCGAACCC width=8 seqs=51 chrX:11757814-11757894 ( 32) TCGAACCC 1 chrI:13297657-13297737 ( 31) TCGAACCC 1 chrX:353258-353338 ( 12) TCGAACCC 1 chrV:19643190-19643270 ( 1) TCGAACCC 1 chrX:12106144-12106224 ( 18) TCGAACCC 1 chrIV:11549872-11549952 ( 3) TCGAACCC 1 chrX:15742047-15742127 ( 68) TCGAACCC 1 chrIII:6887716-6887796 ( 27) TCGAACCC 1 chrX:6903111-6903191 ( 18) TCGAACCC 1 chrIV:620493-620573 ( 43) TCGAACCC 1 chrX:12367650-12367730 ( 7) TCGAACCC 1 chrIV:14576592-14576672 ( 45) TCGAACCC 1 chrI:8530089-8530169 ( 54) TCGAACCC 1 chrIV:3524860-3524940 ( 13) TCGAATCC 1 chrX:8971599-8971679 ( 64) TCGAATCC 1 chrIII:535381-535461 ( 66) TCGAATCC 1 chrX:3970139-3970219 ( 10) TCGATCCC 1 chrI:2410111-2410191 ( 67) TCGATCCC 1 chrII:5032780-5032860 ( 45) TCGACCCC 1 chrIII:502718-502798 ( 64) TCGACCCC 1 chrII:6248692-6248772 ( 10) TCGACCCC 1 chrX:9467751-9467831 ( 9) TCGCACCC 1 chrI:13161057-13161137 ( 58) TCGAGCCC 1 chrX:8386250-8386330 ( 8) TCGAGCCC 1 chrX:1880833-1880913 ( 15) TCGCACCC 1 chrX:13511938-13512018 ( 63) TCGCACCC 1 chrI:6136592-6136672 ( 59) TCGAGCCC 1 chrI:9268956-9269036 ( 3) TCGCACCC 1 chrIII:8650396-8650476 ( 16) TCGCACCC 1 chrI:6105724-6105804 ( 38) TCGAACCA 1 chrIII:10624735-10624815 ( 22) TCGAACCA 1 chrII:3521497-3521577 ( 5) TCGAACCA 1 chrIII:7030513-7030593 ( 59) TCGAACCA 1 chrX:16602646-16602726 ( 3) TCGAACCA 1 chrV:13003486-13003566 ( 38) TTGAACCC 1 chrX:489882-489962 ( 1) TTGAACCC 1 chrIV:16776103-16776183 ( 38) TCGATTCC 1 chrIII:1424524-1424604 ( 20) TCGATTCC 1 chrX:9637794-9637874 ( 73) TTGAACCC 1 chrX:10963840-10963920 ( 41) TCGATTCC 1 chrII:5293442-5293522 ( 63) TCGATTCC 1 chrV:15551792-15551872 ( 22) TTGAACCC 1 chrX:8646486-8646566 ( 47) TCGATTCC 1 chrII:6898231-6898311 ( 16) TCGATTCC 1 chrX:6371334-6371414 ( 70) TCGACTCC 1 chrIV:15289708-15289788 ( 21) TCGACTCC 1 chrIII:4470891-4470971 ( 10) TCGAACCT 1 chrIV:12417919-12417999 ( 22) TCGAACCT 1 chrII:6565284-6565364 ( 18) TCGAGTCC 1 chrI:12225419-12225499 ( 22) TCGATCCA 1 chrI:12198536-12198616 ( 8) TCGCGCCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCGAACCC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.99089 E= 1.7e-020 -1232 -1232 -1232 194 -1232 195 -1232 -173 -1232 -1232 203 -1232 178 -102 -1232 -1232 129 -128 -132 -56 -1232 168 -1232 -15 -1232 207 -1232 -1232 -112 182 -1232 -273 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCGAACCC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 51 E= 1.7e-020 0.000000 0.000000 0.000000 1.000000 0.000000 0.921569 0.000000 0.078431 0.000000 0.000000 1.000000 0.000000 0.882353 0.117647 0.000000 0.000000 0.627451 0.098039 0.098039 0.176471 0.000000 0.764706 0.000000 0.235294 0.000000 1.000000 0.000000 0.000000 0.117647 0.843137 0.000000 0.039216 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCGAACCC MEME-1 regular expression -------------------------------------------------------------------------------- TCGAA[CT]CC -------------------------------------------------------------------------------- Time 9.54 secs. ******************************************************************************** ******************************************************************************** MOTIF SCRCKCGG MEME-2 width = 8 sites = 49 llr = 399 E-value = 1.7e-011 ******************************************************************************** -------------------------------------------------------------------------------- Motif SCRCKCGG MEME-2 Description -------------------------------------------------------------------------------- Simplified A ::5::::: pos.-specific C 6a:a:8:3 probability G 4:5:6:a7 matrix T ::::42:: bits 2.1 * * * 1.9 * * * 1.7 * * * 1.4 * * * Relative 1.2 * * *** Entropy 1.0 ******** (11.7 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CCGCGCGG consensus G A TT C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCRCKCGG MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIV:390438-390518 61 1.16e-05 tcgcaatgcg ccgcgcgg cttttcgcaa chrIII:1202336-1202416 42 1.16e-05 TGTTTGCGGA CCGCGCGG TGTTTGCGTA chrX:1858785-1858865 72 2.37e-05 TGGTTTTCAC CCACGCGG C chrIII:4470891-4470971 58 2.37e-05 ATCCATTAGG CCACGCGG CCACGAGAGC chrIV:12417919-12417999 70 2.37e-05 ATCCATTGCG CCACGCGG CCA chrX:8646486-8646566 32 2.37e-05 TGGTTTTCAC CCACGCGG CCCGGGTTCG chrII:6898231-6898311 1 2.37e-05 . CCACGCGG CCCGGGTTCG chrX:353258-353338 61 4.79e-05 GCGCCTTAGA CCGCTCGG CCATCTCTCC chrIII:10461266-10461346 31 4.79e-05 TGTGTAAAAT GCGCGCGG CACACTTGCG chrX:6903111-6903191 67 4.79e-05 GCGCCTTAGA CCGCTCGG CCATCT chrIII:4171143-4171223 21 4.79e-05 AATGTCATCT GCGCGCGG CATATCTGCA chrV:13962151-13962231 55 4.79e-05 TGCATAAACT GCGCGCGG CAACTGCAAA chrII:14635379-14635459 20 4.79e-05 GCGCCTTAGA CCGCTCGG CCATCTCACC chrI:14721598-14721678 25 4.79e-05 TGCAATGCGC GCGCGCGG TTTTCGCAAT chrX:13448871-13448951 66 7.34e-05 ATCGCCTTAA CCACTCGG CCACCTG chrIII:4689759-4689839 60 7.34e-05 ACAGCGCTAA CCACTCGG ACACACGACC chrII:11484766-11484846 38 7.34e-05 CACGCGCACA CCACTCGG CCACAAATGC chrII:5105241-5105321 38 7.34e-05 CGCACGCTAA CCACTCGG CCACACATGT chrIII:9861648-9861728 23 7.34e-05 AACTCCTTAA CCACTCGG ACATGACTGC chrX:1837857-1837937 25 7.34e-05 GGCGCGCTCG CCACTCGG CCGCGCAGGG chrIII:11371405-11371485 59 7.34e-05 AAACACACTG CCACTCGG CCACGCGTGC chrV:12780417-12780497 33 7.34e-05 AACTCCTTAA CCACTCGG ACATCGCAGC chrX:16602646-16602726 51 7.34e-05 CCGCCTTGAT CCACTCGG CCATCCTCCC chrV:11239375-11239455 66 7.34e-05 CTAACTGGCG GCACGCGG GAAATAA chrI:4175949-4176029 40 7.34e-05 ATTTCTCATT CCACTCGG GTTTGTGATG chrIII:3664382-3664462 39 8.47e-05 TTGCAACACG CCGCGCGC ATTTCGCAAC chrI:8259530-8259610 30 9.67e-05 GACCACTAGA CCACGCGC GCATAGCATT chrII:7184067-7184147 47 1.59e-04 TCCCCCCAAT GCGCGCGC ACATCCACTG chrX:13121280-13121360 11 1.59e-04 cccgggccgc ccgcgtgg caggcgagca chrV:9970270-9970350 45 1.59e-04 CAAGAACGAC GCGCGCGC CTCTTCCCCA chrIII:5555100-5555180 37 1.59e-04 TGCGCAAAAA GCGCGCGC ACATTGCGTT chrX:12367650-12367730 18 1.59e-04 CGAACCCGGG CCGCGTGG GTGAAAACCA chrII:9566185-9566265 58 1.59e-04 GTTTTCATGG CCGCGTGG CCTAATGGAT chrIII:3916773-3916853 59 1.59e-04 TGCAAACACT GCGCGCGC AGCTTGCAAG chrIV:1388239-1388319 3 1.59e-04 GG CCGCGTGG GTGAAAACCA chrX:16928296-16928376 5 1.59e-04 ccgc ccgcgtgg caggcgagca chrV:4731565-4731645 37 1.59e-04 GCAAAAACGC GCGCGCGC ATTGCATGTA chrI:1068003-1068083 45 1.59e-04 acTGTCGCTA CCGCTCGC AGCTCCCCAA chrII:7708753-7708833 1 1.59e-04 . GCGCGCGC ACGGTTTTTG chrIV:16946896-16946976 46 1.97e-04 CTTGCAAATA GCACGCGC GCCGCTTGCA chrIII:1604631-1604711 10 1.97e-04 GGATCGAAA CCACTCGC TGCTAGATTC chrV:12002162-12002242 36 2.36e-04 CAGTCGGTTA GCGCGTGG TACTTATAGT chrV:9503539-9503619 45 2.36e-04 CAGGGGTAGA GCGCTCGC TTCGCATGCG chrII:7001577-7001657 72 2.36e-04 CAGGGGTAGA GCGCTCGC T chrIII:2768808-2768888 49 2.77e-04 CAAGAGTGCC GCACGTGG TTTTTTTTTA chrIV:8253004-8253084 25 2.77e-04 TCCAAATGAC GCACGTGG TGTCGCGGTA chrV:15554109-15554189 61 2.77e-04 TTGTGAGCAG GCACGTGG ATTCTCGACA chrIII:3175131-3175211 56 3.56e-04 GAACACCGTG CCGCTTGC TTGCAAATGG chrI:14737450-14737530 48 3.84e-04 TGTGTGCGCA CCACTTGC GGTATGCCTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCRCKCGG MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:390438-390518 1.2e-05 60_[+2]_12 chrIII:1202336-1202416 1.2e-05 41_[+2]_31 chrX:1858785-1858865 2.4e-05 71_[+2]_1 chrIII:4470891-4470971 2.4e-05 57_[+2]_15 chrIV:12417919-12417999 2.4e-05 69_[+2]_3 chrX:8646486-8646566 2.4e-05 31_[+2]_41 chrII:6898231-6898311 2.4e-05 [+2]_72 chrX:353258-353338 4.8e-05 60_[+2]_12 chrIII:10461266-10461346 4.8e-05 30_[+2]_42 chrX:6903111-6903191 4.8e-05 66_[+2]_6 chrIII:4171143-4171223 4.8e-05 20_[+2]_52 chrV:13962151-13962231 4.8e-05 54_[+2]_18 chrII:14635379-14635459 4.8e-05 19_[+2]_53 chrI:14721598-14721678 4.8e-05 24_[+2]_48 chrX:13448871-13448951 7.3e-05 65_[+2]_7 chrIII:4689759-4689839 7.3e-05 59_[+2]_13 chrII:11484766-11484846 7.3e-05 37_[+2]_35 chrII:5105241-5105321 7.3e-05 37_[+2]_35 chrIII:9861648-9861728 7.3e-05 22_[+2]_50 chrX:1837857-1837937 7.3e-05 24_[+2]_48 chrIII:11371405-11371485 7.3e-05 58_[+2]_14 chrV:12780417-12780497 7.3e-05 32_[+2]_40 chrX:16602646-16602726 7.3e-05 50_[+2]_22 chrV:11239375-11239455 7.3e-05 65_[+2]_7 chrI:4175949-4176029 7.3e-05 39_[+2]_33 chrIII:3664382-3664462 8.5e-05 38_[+2]_34 chrI:8259530-8259610 9.7e-05 29_[+2]_43 chrII:7184067-7184147 0.00016 46_[+2]_26 chrX:13121280-13121360 0.00016 10_[+2]_62 chrV:9970270-9970350 0.00016 44_[+2]_28 chrIII:5555100-5555180 0.00016 36_[+2]_36 chrX:12367650-12367730 0.00016 17_[+2]_55 chrII:9566185-9566265 0.00016 57_[+2]_15 chrIII:3916773-3916853 0.00016 58_[+2]_14 chrIV:1388239-1388319 0.00016 2_[+2]_70 chrX:16928296-16928376 0.00016 4_[+2]_68 chrV:4731565-4731645 0.00016 36_[+2]_36 chrI:1068003-1068083 0.00016 44_[+2]_28 chrII:7708753-7708833 0.00016 [+2]_72 chrIV:16946896-16946976 0.0002 45_[+2]_27 chrIII:1604631-1604711 0.0002 9_[+2]_63 chrV:12002162-12002242 0.00024 35_[+2]_37 chrV:9503539-9503619 0.00024 44_[+2]_28 chrII:7001577-7001657 0.00024 71_[+2]_1 chrIII:2768808-2768888 0.00028 48_[+2]_24 chrIV:8253004-8253084 0.00028 24_[+2]_48 chrV:15554109-15554189 0.00028 60_[+2]_12 chrIII:3175131-3175211 0.00036 55_[+2]_17 chrI:14737450-14737530 0.00038 47_[+2]_25 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCRCKCGG MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF SCRCKCGG width=8 seqs=49 chrIV:390438-390518 ( 61) CCGCGCGG 1 chrIII:1202336-1202416 ( 42) CCGCGCGG 1 chrX:1858785-1858865 ( 72) CCACGCGG 1 chrIII:4470891-4470971 ( 58) CCACGCGG 1 chrIV:12417919-12417999 ( 70) CCACGCGG 1 chrX:8646486-8646566 ( 32) CCACGCGG 1 chrII:6898231-6898311 ( 1) CCACGCGG 1 chrX:353258-353338 ( 61) CCGCTCGG 1 chrIII:10461266-10461346 ( 31) GCGCGCGG 1 chrX:6903111-6903191 ( 67) CCGCTCGG 1 chrIII:4171143-4171223 ( 21) GCGCGCGG 1 chrV:13962151-13962231 ( 55) GCGCGCGG 1 chrII:14635379-14635459 ( 20) CCGCTCGG 1 chrI:14721598-14721678 ( 25) GCGCGCGG 1 chrX:13448871-13448951 ( 66) CCACTCGG 1 chrIII:4689759-4689839 ( 60) CCACTCGG 1 chrII:11484766-11484846 ( 38) CCACTCGG 1 chrII:5105241-5105321 ( 38) CCACTCGG 1 chrIII:9861648-9861728 ( 23) CCACTCGG 1 chrX:1837857-1837937 ( 25) CCACTCGG 1 chrIII:11371405-11371485 ( 59) CCACTCGG 1 chrV:12780417-12780497 ( 33) CCACTCGG 1 chrX:16602646-16602726 ( 51) CCACTCGG 1 chrV:11239375-11239455 ( 66) GCACGCGG 1 chrI:4175949-4176029 ( 40) CCACTCGG 1 chrIII:3664382-3664462 ( 39) CCGCGCGC 1 chrI:8259530-8259610 ( 30) CCACGCGC 1 chrII:7184067-7184147 ( 47) GCGCGCGC 1 chrX:13121280-13121360 ( 11) CCGCGTGG 1 chrV:9970270-9970350 ( 45) GCGCGCGC 1 chrIII:5555100-5555180 ( 37) GCGCGCGC 1 chrX:12367650-12367730 ( 18) CCGCGTGG 1 chrII:9566185-9566265 ( 58) CCGCGTGG 1 chrIII:3916773-3916853 ( 59) GCGCGCGC 1 chrIV:1388239-1388319 ( 3) CCGCGTGG 1 chrX:16928296-16928376 ( 5) CCGCGTGG 1 chrV:4731565-4731645 ( 37) GCGCGCGC 1 chrI:1068003-1068083 ( 45) CCGCTCGC 1 chrII:7708753-7708833 ( 1) GCGCGCGC 1 chrIV:16946896-16946976 ( 46) GCACGCGC 1 chrIII:1604631-1604711 ( 10) CCACTCGC 1 chrV:12002162-12002242 ( 36) GCGCGTGG 1 chrV:9503539-9503619 ( 45) GCGCTCGC 1 chrII:7001577-7001657 ( 72) GCGCTCGC 1 chrIII:2768808-2768888 ( 49) GCACGTGG 1 chrIV:8253004-8253084 ( 25) GCACGTGG 1 chrV:15554109-15554189 ( 61) GCACGTGG 1 chrIII:3175131-3175211 ( 56) CCGCTTGC 1 chrI:14737450-14737530 ( 48) CCACTTGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCRCKCGG MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.1364 E= 1.7e-011 -1226 141 59 -1226 -1226 207 -1226 -1226 87 -1226 112 -1226 -1226 207 -1226 -1226 -1226 -1226 133 57 -1226 170 -1226 -22 -1226 -1226 203 -1226 -1226 36 151 -1226 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCRCKCGG MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 49 E= 1.7e-011 0.000000 0.632653 0.367347 0.000000 0.000000 1.000000 0.000000 0.000000 0.469388 0.000000 0.530612 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.612245 0.387755 0.000000 0.775510 0.000000 0.224490 0.000000 0.000000 1.000000 0.000000 0.000000 0.306122 0.693878 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCRCKCGG MEME-2 regular expression -------------------------------------------------------------------------------- [CG]C[GA]C[GT][CT]G[GC] -------------------------------------------------------------------------------- Time 14.91 secs. ******************************************************************************** ******************************************************************************** MOTIF TAGCKCAG MEME-3 width = 8 sites = 25 llr = 241 E-value = 1.1e-009 ******************************************************************************** -------------------------------------------------------------------------------- Motif TAGCKCAG MEME-3 Description -------------------------------------------------------------------------------- Simplified A :8::::a: pos.-specific C :::a:a:: probability G :2a:4::9 matrix T a:::6::1 bits 2.1 ** * 1.9 * ** ** 1.7 * ** ** 1.4 * ** *** Relative 1.2 **** *** Entropy 1.0 ******** (13.9 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TAGCTCAG consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAGCKCAG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:12665194-12665274 41 1.53e-05 GTGCCGTCGA TAGCTCAG TTGGTAGAGC chrII:12494714-12494794 34 1.53e-05 TCGGCCGCCA TAGCTCAG TCGGTTAGAG chrV:9503539-9503619 30 1.53e-05 GTCGGGGGTA TAGCTCAG GGGTAGAGCG chrX:15297446-15297526 32 1.53e-05 ACGGCCGCCA TAGCTCAG TCGGTTAGAG chrX:12563763-12563843 32 1.53e-05 TGTGCCCTTA TAGCTCAG TGGTAGAGCG chrX:6593556-6593636 47 1.53e-05 ACTGCCTCGA TAGCTCAG TTGGGAGAGC chrIII:5305854-5305934 58 1.53e-05 GGCGCCCTTA TAGCTCAG TGGTAGAGCG chrIII:11792788-11792868 1 1.53e-05 . TAGCTCAG TGGCAGAGCG chrX:14804838-14804918 46 1.53e-05 CACGGGGGTA TAGCTCAG TGGCAGAGCA chrI:11505519-11505599 39 1.53e-05 ATCGGGGGTA TAGCTCAG TGGCAGAGCA chrII:7001577-7001657 57 1.53e-05 GTTACCTGTG TAGCTCAG GGGTAGAGCG chrIV:16398372-16398452 19 1.53e-05 TGCGGGGGTA TAGCTCAG TGGTAGAGCG chrI:6136592-6136672 12 1.53e-05 GCCGCCCGGT TAGCTCAG TCGGTAGAGC chrIII:535381-535461 8 1.53e-05 CCGTCGA TAGCTCAG TTGGTAGAGC chrX:8638922-8639002 7 1.53e-05 GGGGTA TAGCTCAG TGGCAGAGCA chrX:3697696-3697776 67 2.96e-05 CGTGCTTCCG TAGCGCAG TAGGCA chrIII:8106625-8106705 35 2.96e-05 GCCGCTTCCG TAGCGCAG TAGGCAGCGC chrIII:1122420-1122500 21 2.96e-05 TGTTGCCGTT TAGCGCAG GCGGGAGTGG chrV:12002162-12002242 21 7.41e-05 CGTGCCCCAT TGGCGCAG TCGGTTAGCG chrIV:7574034-7574114 34 7.41e-05 GACGGCCTTG TGGCGCAG GCGGTTACTG chrII:5292434-5292514 55 7.41e-05 GAAATAAAAT TAGCTCAT GTTTCTGTGA chrV:6888972-6889052 40 7.41e-05 GATGCACGGG TGGCGCAG TTGGTTATCG chrI:2410111-2410191 20 7.41e-05 ACTGCGCGTC TGGCGCAG CCGGTTGGCT chrI:5986341-5986421 53 8.94e-05 CCCGTGGTGC TAGCGCAT TTTGTGTCTT chrI:6532079-6532159 50 8.94e-05 CATAATTTGC TAGCGCAT TTCCCTTGCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAGCKCAG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:12665194-12665274 1.5e-05 40_[+3]_32 chrII:12494714-12494794 1.5e-05 33_[+3]_39 chrV:9503539-9503619 1.5e-05 29_[+3]_43 chrX:15297446-15297526 1.5e-05 31_[+3]_41 chrX:12563763-12563843 1.5e-05 31_[+3]_41 chrX:6593556-6593636 1.5e-05 46_[+3]_26 chrIII:5305854-5305934 1.5e-05 57_[+3]_15 chrIII:11792788-11792868 1.5e-05 [+3]_72 chrX:14804838-14804918 1.5e-05 45_[+3]_27 chrI:11505519-11505599 1.5e-05 38_[+3]_34 chrII:7001577-7001657 1.5e-05 56_[+3]_16 chrIV:16398372-16398452 1.5e-05 18_[+3]_54 chrI:6136592-6136672 1.5e-05 11_[+3]_61 chrIII:535381-535461 1.5e-05 7_[+3]_65 chrX:8638922-8639002 1.5e-05 6_[+3]_66 chrX:3697696-3697776 3e-05 66_[+3]_6 chrIII:8106625-8106705 3e-05 34_[+3]_38 chrIII:1122420-1122500 3e-05 20_[+3]_52 chrV:12002162-12002242 7.4e-05 20_[+3]_52 chrIV:7574034-7574114 7.4e-05 33_[+3]_39 chrII:5292434-5292514 7.4e-05 54_[+3]_18 chrV:6888972-6889052 7.4e-05 39_[+3]_33 chrI:2410111-2410191 7.4e-05 19_[+3]_53 chrI:5986341-5986421 8.9e-05 52_[+3]_20 chrI:6532079-6532159 8.9e-05 49_[+3]_23 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAGCKCAG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TAGCKCAG width=8 seqs=25 chrX:12665194-12665274 ( 41) TAGCTCAG 1 chrII:12494714-12494794 ( 34) TAGCTCAG 1 chrV:9503539-9503619 ( 30) TAGCTCAG 1 chrX:15297446-15297526 ( 32) TAGCTCAG 1 chrX:12563763-12563843 ( 32) TAGCTCAG 1 chrX:6593556-6593636 ( 47) TAGCTCAG 1 chrIII:5305854-5305934 ( 58) TAGCTCAG 1 chrIII:11792788-11792868 ( 1) TAGCTCAG 1 chrX:14804838-14804918 ( 46) TAGCTCAG 1 chrI:11505519-11505599 ( 39) TAGCTCAG 1 chrII:7001577-7001657 ( 57) TAGCTCAG 1 chrIV:16398372-16398452 ( 19) TAGCTCAG 1 chrI:6136592-6136672 ( 12) TAGCTCAG 1 chrIII:535381-535461 ( 8) TAGCTCAG 1 chrX:8638922-8639002 ( 7) TAGCTCAG 1 chrX:3697696-3697776 ( 67) TAGCGCAG 1 chrIII:8106625-8106705 ( 35) TAGCGCAG 1 chrIII:1122420-1122500 ( 21) TAGCGCAG 1 chrV:12002162-12002242 ( 21) TGGCGCAG 1 chrIV:7574034-7574114 ( 34) TGGCGCAG 1 chrII:5292434-5292514 ( 55) TAGCTCAT 1 chrV:6888972-6889052 ( 40) TGGCGCAG 1 chrI:2410111-2410191 ( 20) TGGCGCAG 1 chrI:5986341-5986421 ( 53) TAGCGCAT 1 chrI:6532079-6532159 ( 50) TAGCGCAT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAGCKCAG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.0004 E= 1.1e-009 -1129 -1129 -1129 194 171 -1129 -61 -1129 -1129 -1129 203 -1129 -1129 207 -1129 -1129 -1129 -1129 56 129 -1129 207 -1129 -1129 196 -1129 -1129 -1129 -1129 -1129 185 -112 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAGCKCAG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 25 E= 1.1e-009 0.000000 0.000000 0.000000 1.000000 0.840000 0.000000 0.160000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.360000 0.640000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.880000 0.120000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAGCKCAG MEME-3 regular expression -------------------------------------------------------------------------------- TAGC[TG]CAG -------------------------------------------------------------------------------- Time 18.55 secs. ******************************************************************************** ******************************************************************************** MOTIF TWTTTTTT MEME-4 width = 8 sites = 63 llr = 468 E-value = 4.3e-006 ******************************************************************************** -------------------------------------------------------------------------------- Motif TWTTTTTT MEME-4 Description -------------------------------------------------------------------------------- Simplified A :6:1:3:: pos.-specific C 111::::: probability G :::::::1 matrix T 9399a7a9 bits 2.1 1.9 * * 1.7 * * 1.4 * * ** Relative 1.2 * *** ** Entropy 1.0 * *** ** (10.7 bits) 0.8 * ****** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TATTTTTT consensus T A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TWTTTTTT MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIV:16776103-16776183 60 2.12e-05 GAACGCAGAT TATTTTTT TTTAATTTTG chrI:6091155-6091235 60 2.12e-05 AAGGATTCAC TATTTTTT ATGCTCTTAC chrI:1175857-1175937 54 2.12e-05 GTTTTTATCA TATTTTTT CATTTTTCGA chrI:14708086-14708166 20 2.12e-05 TAAATTCGAA TATTTTTT AAATTCTCCA chrII:6898231-6898311 38 2.12e-05 ATGGGAAGCT TATTTTTT CTCATTTTTT chrII:7708753-7708833 51 2.12e-05 ACGAGTGTTT TATTTTTT AGCCCAAGGC chrM:12364-12444 39 2.12e-05 CTATTTACTA TATTTTTT TCTAGCTTAG chrIII:13781077-13781157 37 2.12e-05 CGGAATGCAG TATTTTTT AAAATTCTTC chrM:5895-5975 58 2.12e-05 TCTTCTTTTG TATTTTTT GAACATTTTT chrIII:2768808-2768888 57 4.27e-05 CCGCACGTGG TTTTTTTT TAATTATTAT chrV:19126069-19126149 60 4.27e-05 TCTTTTTTGT TTTTTTTT AAAATTAAAA chrIII:1202336-1202416 72 4.27e-05 TTTATGGATT TTTTTTTT T chrIV:15289708-15289788 71 4.27e-05 TGGTCAAAGT TTTTTTTT TT chrIV:13788828-13788908 73 4.27e-05 TCGCATTTTC TTTTTTTT chrI:8223205-8223285 62 6.36e-05 cttttcttcg tatttatt tccagctgga chrV:11113354-11113434 65 6.36e-05 GCCGAAGTGA TATTTATT TCAAAAAT chrII:4791444-4791524 62 6.36e-05 TCGGACAATA TATTTATT TATGTTTTCA chrM:4851-4931 1 6.36e-05 . TATTTATT AGTAATAATA chrX:9296782-9296862 45 6.36e-05 GGTGACACGC TATTTATT GAGGACGCAA chrM:9091-9171 12 6.36e-05 ATATCTGCAG TATTTATT TTATTATTTA chrV:1003902-1003982 49 8.48e-05 TATATTGCCG TTTTTATT TCTAATTTTT chrIV:3524860-3524940 68 8.48e-05 CGATTTGGAC TTTTTATT TTTCT chrIII:1424524-1424604 44 8.48e-05 ACGCAGAAAA TTTTTATT TTTCTTGTTT chrIV:620493-620573 73 8.48e-05 GCTTTTGGAT TTTTTATT chrV:265753-265833 42 8.48e-05 AATTTCCAAG TTTTTATT GATTTGTTGC chrV:265394-265474 57 8.48e-05 ATTTTCCAAG TTTTTATT GATTTGTTGC chrIV:14034072-14034152 32 1.05e-04 TGAAGTTGGG TCTTTTTT GGGCGAATTA chrV:5791045-5791125 69 1.05e-04 GCATTTCTCG TCTTTTTT GTGA chrI:11517282-11517362 69 1.05e-04 GCTGCGCATT TCTTTTTT TCTC chrIII:1604631-1604711 26 1.05e-04 GCTGCTAGAT TCTTTTTT CCTCTTTTAA chrI:7951850-7951930 68 1.05e-04 CCTCTCTTCT TCTTTTTT TGCTA chrX:14115646-14115726 4 1.05e-04 CCC TCTTTTTT TGTTATAGGC chrX:10963840-10963920 62 1.25e-04 CGAACGCATA TATATTTT ATTTTCTCAC chrX:5056376-5056456 5 1.25e-04 ccac tatatttt actctCTGTG chrI:933476-933556 56 1.25e-04 ggcttcccac tatatttt actctctgtg chrIV:12594655-12594735 44 1.45e-04 CTCCACTTTT CATTTTTT ATGTCTAAGC chrIII:6551552-6551632 9 1.45e-04 ACAAAACG CATTTTTT CTCACGCAAC chrV:4615939-4616019 66 1.45e-04 AACGCGCCAG CATTTTTT CCGCGAA chrI:2514352-2514432 51 1.84e-04 GAGGTTTCGA TATTTTTG CGGAGACAAA chrII:7001577-7001657 17 1.84e-04 GCCCTTCACC TATTTTTG ACCTGTTATT chrX:3970139-3970219 32 2.03e-04 CCGGCCCACT TACTTTTT TCCTTGTAGC chrII:4372094-4372174 40 2.03e-04 cgtataatcc tacttttt tgccgattcc chrI:1068003-1068083 17 2.03e-04 aaaactacag tacttttt aaaggcgcac chrIV:796786-796866 1 2.25e-04 . TTTATTTT GATAAATTGA chrII:14063118-14063198 63 2.25e-04 ACATTTTAGG TTTATTTT GGTTTTATTA chrM:1604-1684 5 2.84e-04 TAAA TATGTTTT GAAAACATGT chrV:7060497-7060577 8 3.63e-04 AAATCAT CATTTATT ATTGCGCAAG chrX:8646486-8646566 68 3.63e-04 CATGGGAAGT TTCTTTTT GAATT chrII:14143946-14144026 68 3.83e-04 ACCCGAGGTA TATTTATG AAATT chrIV:3552123-3552203 38 4.23e-04 AGATAAGCGT GATTTTTT ATAAGGCATC chrII:5836572-5836652 54 4.23e-04 GCTTGCTGCA AATTTTTT AATCAGCAAG chrII:6565284-6565364 38 4.23e-04 TAGGTGGCTT GATTTTTT GCAGTCTGAA chrI:8024773-8024853 49 4.84e-04 AGTTTAAAGA TAATTTTT CTTTCCTGAA chrI:1416102-1416182 6 4.84e-04 GAAAC TTTGTTTT CAAAAAAGTA chrI:5176405-5176485 1 5.24e-04 . TTTTTCTT GACAGAGAAA chrV:18723521-18723601 52 5.24e-04 AAAATTTCGA TTTTTCTT CATAAAACCT chrM:10796-10876 7 5.24e-04 TTAGGC TTTATATT AAAGCTGGCT chrIV:9316266-9316346 18 5.44e-04 TCCCCGCCCA CTTTTATT CGTCCCATTT chrV:7230999-7231079 45 6.02e-04 CCCCGCGCAC TTTTTATG CAATGCTGCC chrIII:3664382-3664462 73 6.02e-04 GCACGTAGTT TATGTATT chrI:5986341-5986421 67 7.21e-04 GCATTTTGTG TCTTTTTG TCTTTT chrI:14721598-14721678 63 7.21e-04 GGAGTTGCCG TTATTTTT CTTTTACTTT chrII:6913447-6913527 12 7.79e-04 TTCGAAAGAA AATTTATT GTCCGAGAGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TWTTTTTT MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:16776103-16776183 2.1e-05 59_[+4]_13 chrI:6091155-6091235 2.1e-05 59_[+4]_13 chrI:1175857-1175937 2.1e-05 53_[+4]_19 chrI:14708086-14708166 2.1e-05 19_[+4]_53 chrII:6898231-6898311 2.1e-05 37_[+4]_35 chrII:7708753-7708833 2.1e-05 50_[+4]_22 chrM:12364-12444 2.1e-05 38_[+4]_34 chrIII:13781077-13781157 2.1e-05 36_[+4]_36 chrM:5895-5975 2.1e-05 57_[+4]_15 chrIII:2768808-2768888 4.3e-05 56_[+4]_16 chrV:19126069-19126149 4.3e-05 59_[+4]_13 chrIII:1202336-1202416 4.3e-05 71_[+4]_1 chrIV:15289708-15289788 4.3e-05 70_[+4]_2 chrIV:13788828-13788908 4.3e-05 72_[+4] chrI:8223205-8223285 6.4e-05 61_[+4]_11 chrV:11113354-11113434 6.4e-05 64_[+4]_8 chrII:4791444-4791524 6.4e-05 61_[+4]_11 chrM:4851-4931 6.4e-05 [+4]_72 chrX:9296782-9296862 6.4e-05 44_[+4]_28 chrM:9091-9171 6.4e-05 11_[+4]_61 chrV:1003902-1003982 8.5e-05 48_[+4]_24 chrIV:3524860-3524940 8.5e-05 67_[+4]_5 chrIII:1424524-1424604 8.5e-05 43_[+4]_29 chrIV:620493-620573 8.5e-05 72_[+4] chrV:265753-265833 8.5e-05 41_[+4]_31 chrV:265394-265474 8.5e-05 56_[+4]_16 chrIV:14034072-14034152 0.0001 31_[+4]_41 chrV:5791045-5791125 0.0001 68_[+4]_4 chrI:11517282-11517362 0.0001 68_[+4]_4 chrIII:1604631-1604711 0.0001 25_[+4]_47 chrI:7951850-7951930 0.0001 67_[+4]_5 chrX:14115646-14115726 0.0001 3_[+4]_69 chrX:10963840-10963920 0.00013 61_[+4]_11 chrX:5056376-5056456 0.00013 4_[+4]_68 chrI:933476-933556 0.00013 55_[+4]_17 chrIV:12594655-12594735 0.00014 43_[+4]_29 chrIII:6551552-6551632 0.00014 8_[+4]_64 chrV:4615939-4616019 0.00014 65_[+4]_7 chrI:2514352-2514432 0.00018 50_[+4]_22 chrII:7001577-7001657 0.00018 16_[+4]_56 chrX:3970139-3970219 0.0002 31_[+4]_41 chrII:4372094-4372174 0.0002 39_[+4]_33 chrI:1068003-1068083 0.0002 16_[+4]_56 chrIV:796786-796866 0.00022 [+4]_72 chrII:14063118-14063198 0.00022 62_[+4]_10 chrM:1604-1684 0.00028 4_[+4]_68 chrV:7060497-7060577 0.00036 7_[+4]_65 chrX:8646486-8646566 0.00036 67_[+4]_5 chrII:14143946-14144026 0.00038 67_[+4]_5 chrIV:3552123-3552203 0.00042 37_[+4]_35 chrII:5836572-5836652 0.00042 53_[+4]_19 chrII:6565284-6565364 0.00042 37_[+4]_35 chrI:8024773-8024853 0.00048 48_[+4]_24 chrI:1416102-1416182 0.00048 5_[+4]_67 chrI:5176405-5176485 0.00052 [+4]_72 chrV:18723521-18723601 0.00052 51_[+4]_21 chrM:10796-10876 0.00052 6_[+4]_66 chrIV:9316266-9316346 0.00054 17_[+4]_55 chrV:7230999-7231079 0.0006 44_[+4]_28 chrIII:3664382-3664462 0.0006 72_[+4] chrI:5986341-5986421 0.00072 66_[+4]_6 chrI:14721598-14721678 0.00072 62_[+4]_10 chrII:6913447-6913527 0.00078 11_[+4]_61 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TWTTTTTT MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TWTTTTTT width=8 seqs=63 chrIV:16776103-16776183 ( 60) TATTTTTT 1 chrI:6091155-6091235 ( 60) TATTTTTT 1 chrI:1175857-1175937 ( 54) TATTTTTT 1 chrI:14708086-14708166 ( 20) TATTTTTT 1 chrII:6898231-6898311 ( 38) TATTTTTT 1 chrII:7708753-7708833 ( 51) TATTTTTT 1 chrM:12364-12444 ( 39) TATTTTTT 1 chrIII:13781077-13781157 ( 37) TATTTTTT 1 chrM:5895-5975 ( 58) TATTTTTT 1 chrIII:2768808-2768888 ( 57) TTTTTTTT 1 chrV:19126069-19126149 ( 60) TTTTTTTT 1 chrIII:1202336-1202416 ( 72) TTTTTTTT 1 chrIV:15289708-15289788 ( 71) TTTTTTTT 1 chrIV:13788828-13788908 ( 73) TTTTTTTT 1 chrI:8223205-8223285 ( 62) TATTTATT 1 chrV:11113354-11113434 ( 65) TATTTATT 1 chrII:4791444-4791524 ( 62) TATTTATT 1 chrM:4851-4931 ( 1) TATTTATT 1 chrX:9296782-9296862 ( 45) TATTTATT 1 chrM:9091-9171 ( 12) TATTTATT 1 chrV:1003902-1003982 ( 49) TTTTTATT 1 chrIV:3524860-3524940 ( 68) TTTTTATT 1 chrIII:1424524-1424604 ( 44) TTTTTATT 1 chrIV:620493-620573 ( 73) TTTTTATT 1 chrV:265753-265833 ( 42) TTTTTATT 1 chrV:265394-265474 ( 57) TTTTTATT 1 chrIV:14034072-14034152 ( 32) TCTTTTTT 1 chrV:5791045-5791125 ( 69) TCTTTTTT 1 chrI:11517282-11517362 ( 69) TCTTTTTT 1 chrIII:1604631-1604711 ( 26) TCTTTTTT 1 chrI:7951850-7951930 ( 68) TCTTTTTT 1 chrX:14115646-14115726 ( 4) TCTTTTTT 1 chrX:10963840-10963920 ( 62) TATATTTT 1 chrX:5056376-5056456 ( 5) TATATTTT 1 chrI:933476-933556 ( 56) TATATTTT 1 chrIV:12594655-12594735 ( 44) CATTTTTT 1 chrIII:6551552-6551632 ( 9) CATTTTTT 1 chrV:4615939-4616019 ( 66) CATTTTTT 1 chrI:2514352-2514432 ( 51) TATTTTTG 1 chrII:7001577-7001657 ( 17) TATTTTTG 1 chrX:3970139-3970219 ( 32) TACTTTTT 1 chrII:4372094-4372174 ( 40) TACTTTTT 1 chrI:1068003-1068083 ( 17) TACTTTTT 1 chrIV:796786-796866 ( 1) TTTATTTT 1 chrII:14063118-14063198 ( 63) TTTATTTT 1 chrM:1604-1684 ( 5) TATGTTTT 1 chrV:7060497-7060577 ( 8) CATTTATT 1 chrX:8646486-8646566 ( 68) TTCTTTTT 1 chrII:14143946-14144026 ( 68) TATTTATG 1 chrIV:3552123-3552203 ( 38) GATTTTTT 1 chrII:5836572-5836652 ( 54) AATTTTTT 1 chrII:6565284-6565364 ( 38) GATTTTTT 1 chrI:8024773-8024853 ( 49) TAATTTTT 1 chrI:1416102-1416182 ( 6) TTTGTTTT 1 chrI:5176405-5176485 ( 1) TTTTTCTT 1 chrV:18723521-18723601 ( 52) TTTTTCTT 1 chrM:10796-10876 ( 7) TTTATATT 1 chrIV:9316266-9316346 ( 18) CTTTTATT 1 chrV:7230999-7231079 ( 45) TTTTTATG 1 chrIII:3664382-3664462 ( 73) TATGTATT 1 chrI:5986341-5986421 ( 67) TCTTTTTG 1 chrI:14721598-14721678 ( 63) TTATTTTT 1 chrII:6913447-6913527 ( 12) AATTTATT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TWTTTTTT MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.89709 E= 4.3e-006 -301 -159 -294 172 111 -110 -1262 35 -301 -191 -1262 179 -143 -1262 -236 172 -1262 -1262 -1262 194 23 -291 -1262 135 -1262 -1262 -1262 194 -1262 -1262 -162 182 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TWTTTTTT MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 63 E= 4.3e-006 0.031746 0.079365 0.031746 0.857143 0.555556 0.111111 0.000000 0.333333 0.031746 0.063492 0.000000 0.904762 0.095238 0.000000 0.047619 0.857143 0.000000 0.000000 0.000000 1.000000 0.301587 0.031746 0.000000 0.666667 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.079365 0.920635 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TWTTTTTT MEME-4 regular expression -------------------------------------------------------------------------------- T[AT]TTT[TA]TT -------------------------------------------------------------------------------- Time 22.08 secs. ******************************************************************************** ******************************************************************************** MOTIF AGTGGTTA MEME-5 width = 8 sites = 16 llr = 168 E-value = 5.8e-005 ******************************************************************************** -------------------------------------------------------------------------------- Motif AGTGGTTA MEME-5 Description -------------------------------------------------------------------------------- Simplified A a::::::8 pos.-specific C :::::::: probability G :a:aa::2 matrix T ::a::aa: bits 2.1 * ** 1.9 ******* 1.7 ******* 1.4 ******* Relative 1.2 ******** Entropy 1.0 ******** (15.2 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AGTGGTTA consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGTGGTTA MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:13306997-13307077 50 1.71e-05 CCTATGGTGT AGTGGTTA TCACGTCTGC chrI:2935711-2935791 22 1.71e-05 TGTGTGGCCG AGTGGTTA ACACGCTCAC chrX:1858785-1858865 47 1.71e-05 CATGTGGTCT AGTGGTTA GGATTCGTGG chrI:13161057-13161137 17 1.71e-05 CTCGTGGTGT AGTGGTTA TCACATCTGT chrIII:6158744-6158824 47 1.71e-05 GTCATGTCCG AGTGGTTA AGGAGATTGA chrX:4444202-4444282 73 1.71e-05 CATGTGGTCT AGTGGTTA chrV:53461-53541 28 1.71e-05 cgcatggccg agtggtta gtacgtatgc chrII:5293442-5293522 23 1.71e-05 GTTGTGGTCT AGTGGTTA GGATTTATGG chrIV:620493-620573 2 1.71e-05 T AGTGGTTA TCACGTCTGC chrX:5707995-5708075 46 1.71e-05 CAGGTGGCCG AGTGGTTA AGGCGATGGA chrX:16298315-16298395 39 1.71e-05 CTCGTGGTGT AGTGGTTA TCACATCTGT chrX:8646486-8646566 7 1.71e-05 TGGTCT AGTGGTTA GGATTCGTGG chrX:8971599-8971679 14 1.71e-05 GTCATGTCCG AGTGGTTA AGGAGATTGA chrI:5706982-5707062 14 3.33e-05 TTGCTGGCCG AGTGGTTG TGCGCCCGGT chrIII:502718-502798 24 3.33e-05 TGCGTGGATC AGTGGTTG TGGTCGCCGC chrI:11517282-11517362 21 3.33e-05 CGCGCCAACC AGTGGTTG CTGGCGCGTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGTGGTTA MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:13306997-13307077 1.7e-05 49_[+5]_23 chrI:2935711-2935791 1.7e-05 21_[+5]_51 chrX:1858785-1858865 1.7e-05 46_[+5]_26 chrI:13161057-13161137 1.7e-05 16_[+5]_56 chrIII:6158744-6158824 1.7e-05 46_[+5]_26 chrX:4444202-4444282 1.7e-05 72_[+5] chrV:53461-53541 1.7e-05 27_[+5]_45 chrII:5293442-5293522 1.7e-05 22_[+5]_50 chrIV:620493-620573 1.7e-05 1_[+5]_71 chrX:5707995-5708075 1.7e-05 45_[+5]_27 chrX:16298315-16298395 1.7e-05 38_[+5]_34 chrX:8646486-8646566 1.7e-05 6_[+5]_66 chrX:8971599-8971679 1.7e-05 13_[+5]_59 chrI:5706982-5707062 3.3e-05 13_[+5]_59 chrIII:502718-502798 3.3e-05 23_[+5]_49 chrI:11517282-11517362 3.3e-05 20_[+5]_52 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGTGGTTA MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AGTGGTTA width=8 seqs=16 chrX:13306997-13307077 ( 50) AGTGGTTA 1 chrI:2935711-2935791 ( 22) AGTGGTTA 1 chrX:1858785-1858865 ( 47) AGTGGTTA 1 chrI:13161057-13161137 ( 17) AGTGGTTA 1 chrIII:6158744-6158824 ( 47) AGTGGTTA 1 chrX:4444202-4444282 ( 73) AGTGGTTA 1 chrV:53461-53541 ( 28) AGTGGTTA 1 chrII:5293442-5293522 ( 23) AGTGGTTA 1 chrIV:620493-620573 ( 2) AGTGGTTA 1 chrX:5707995-5708075 ( 46) AGTGGTTA 1 chrX:16298315-16298395 ( 39) AGTGGTTA 1 chrX:8646486-8646566 ( 7) AGTGGTTA 1 chrX:8971599-8971679 ( 14) AGTGGTTA 1 chrI:5706982-5707062 ( 14) AGTGGTTG 1 chrIII:502718-502798 ( 24) AGTGGTTG 1 chrI:11517282-11517362 ( 21) AGTGGTTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGTGGTTA MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.1543 E= 5.8e-005 196 -1064 -1064 -1064 -1064 -1064 203 -1064 -1064 -1064 -1064 194 -1064 -1064 203 -1064 -1064 -1064 203 -1064 -1064 -1064 -1064 194 -1064 -1064 -1064 194 166 -1064 -38 -1064 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGTGGTTA MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 16 E= 5.8e-005 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.812500 0.000000 0.187500 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGTGGTTA MEME-5 regular expression -------------------------------------------------------------------------------- AGTGGTTA -------------------------------------------------------------------------------- Time 25.49 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:265394-265474 6.38e-02 56_[+4(8.48e-05)]_16 chrI:933476-933556 2.26e-01 80 chrM:5895-5975 7.68e-02 57_[+4(2.12e-05)]_15 chrIII:3500025-3500105 9.52e-01 80 chrIII:931565-931645 8.89e-01 80 chrM:9091-9171 1.37e-01 11_[+4(6.36e-05)]_4_[+4(6.36e-05)]_\ 49 chrV:265753-265833 1.17e-01 41_[+4(8.48e-05)]_31 chrM:10796-10876 5.28e-01 80 chrM:2108-2188 9.85e-01 80 chrIII:13781077-13781157 8.46e-02 [+4(6.36e-05)]_28_[+4(2.12e-05)]_36 chrM:12364-12444 2.58e-02 38_[+4(2.12e-05)]_34 chrM:1604-1684 2.92e-01 80 chrM:4641-4721 3.85e-01 80 chrIII:3664382-3664462 2.65e-02 38_[+2(8.47e-05)]_34 chrM:7082-7162 7.65e-01 80 chrM:6096-6176 8.65e-01 80 chrIII:8650396-8650476 1.12e-01 15_[+1(8.12e-05)]_57 chrIV:11071029-11071109 1.00e+00 80 chrII:7708753-7708833 4.27e-04 50_[+4(2.12e-05)]_22 chrIII:3175131-3175211 3.65e-01 80 chrI:1068003-1068083 1.38e-02 80 chrX:9296782-9296862 1.32e-01 44_[+4(6.36e-05)]_28 chrI:1415899-1415979 7.46e-01 80 chrIV:13549493-13549573 3.21e-01 80 chrX:5056376-5056456 2.40e-01 80 chrX:8603186-8603266 8.68e-01 80 chrV:7230999-7231079 4.54e-02 80 chrIII:12399821-12399901 6.57e-01 80 chrI:2487835-2487915 7.08e-01 80 chrX:12890225-12890305 7.83e-01 80 chrM:1205-1285 6.45e-01 80 chrII:6898231-6898311 6.93e-05 [+2(2.37e-05)]_29_[+4(2.12e-05)]_35 chrX:14115646-14115726 7.05e-02 80 chrIV:13788828-13788908 1.11e-01 72_[+4(4.27e-05)] chrIII:1122420-1122500 1.63e-02 20_[+3(2.96e-05)]_52 chrIII:4426871-4426951 1.39e-01 80 chrV:5284759-5284839 7.98e-01 80 chrV:3587796-3587876 6.48e-02 80 chrI:4633639-4633719 5.06e-01 80 chrI:6532079-6532159 1.86e-01 49_[+3(8.94e-05)]_23 chrV:18723521-18723601 6.33e-01 80 chrM:4851-4931 1.31e-02 [+4(6.36e-05)]_72 chrI:12225419-12225499 4.14e-03 14_[+5(6.64e-05)]_58 chrX:8638922-8639002 1.97e-02 6_[+3(1.53e-05)]_66 chrI:14721598-14721678 1.30e-02 24_[+2(4.79e-05)]_48 chrIII:535381-535461 6.31e-04 7_[+3(1.53e-05)]_50_[+1(2.87e-05)]_\ 7 chrIII:8768052-8768132 8.01e-01 80 chrII:4238057-4238137 9.30e-02 80 chrX:5319333-5319413 2.82e-01 80 chrI:8530089-8530169 3.70e-02 53_[+1(1.37e-05)]_19 chrII:14635379-14635459 1.61e-01 19_[+2(4.79e-05)]_53 chrV:4731565-4731645 1.12e-01 80 chrX:16928296-16928376 1.84e-01 80 chrI:1823144-1823224 3.77e-01 80 chrIV:1388239-1388319 9.28e-02 80 chrIII:7729404-7729484 6.40e-01 80 chrI:4175949-4176029 3.01e-02 39_[+2(7.34e-05)]_33 chrV:5284523-5284603 7.98e-01 80 chrX:8971599-8971679 7.79e-04 13_[+5(1.71e-05)]_42_[+1(2.87e-05)]_\ 9 chrII:4372094-4372174 1.56e-01 80 chrIV:15289708-15289788 3.52e-05 69_[+4(4.27e-05)]_3 chrI:1575625-1575705 8.85e-01 80 chrIII:1601601-1601681 3.15e-01 80 chrV:4615939-4616019 1.47e-02 80 chrIII:11093560-11093640 6.06e-01 80 chrIV:14576592-14576672 2.67e-02 44_[+1(1.37e-05)]_28 chrI:11323342-11323422 2.29e-01 80 chrV:12510127-12510207 1.00e+00 80 chrV:13962151-13962231 1.48e-01 54_[+2(4.79e-05)]_18 chrII:6565284-6565364 5.93e-03 80 chrI:14708086-14708166 1.13e-02 19_[+4(2.12e-05)]_53 chrII:6248692-6248772 7.14e-02 9_[+1(5.54e-05)]_63 chrIII:8106625-8106705 6.62e-02 34_[+3(2.96e-05)]_38 chrV:2603066-2603146 1.00e+00 80 chrX:8646486-8646566 5.33e-06 6_[+5(1.71e-05)]_17_[+2(2.37e-05)]_\ 41 chrV:11239375-11239455 3.42e-02 65_[+2(7.34e-05)]_7 chrII:14063118-14063198 7.19e-02 80 chrI:7951850-7951930 2.27e-02 80 chrV:14524351-14524431 1.66e-01 80 chrI:9268956-9269036 8.47e-02 2_[+1(8.12e-05)]_70 chrIV:12417919-12417999 1.00e-02 69_[+2(2.37e-05)]_3 chrII:5836572-5836652 4.17e-01 80 chrIV:9191338-9191418 9.79e-01 80 chrV:15554109-15554189 1.27e-01 80 chrV:15551792-15551872 2.44e-01 80 chrIII:4568709-4568789 4.05e-01 80 chrI:1175857-1175937 3.70e-02 53_[+4(2.12e-05)]_19 chrIII:3916773-3916853 2.13e-01 80 chrX:16602646-16602726 2.30e-02 2_[+1(9.60e-05)]_40_[+2(7.34e-05)]_\ 22 chrV:12780417-12780497 1.02e-01 32_[+2(7.34e-05)]_40 chrX:16298315-16298395 2.21e-02 38_[+5(1.71e-05)]_34 chrI:6136592-6136672 1.45e-04 11_[+3(1.53e-05)]_39_[+1(8.12e-05)]_\ 14 chrII:4791444-4791524 6.72e-02 61_[+4(6.36e-05)]_11 chrIV:9477734-9477814 5.27e-01 80 chrIII:7030513-7030593 5.08e-02 58_[+1(9.60e-05)]_14 chrX:5707995-5708075 3.30e-03 45_[+5(1.71e-05)]_27 chrIV:16398372-16398452 4.51e-03 18_[+3(1.53e-05)]_54 chrIV:11026160-11026240 1.00e+00 80 chrII:7001577-7001657 2.39e-04 56_[+3(1.53e-05)]_16 chrIII:1202336-1202416 1.39e-03 41_[+2(1.16e-05)]_20_[+4(4.27e-05)]_\ 3 chrII:9566185-9566265 1.01e-01 80 chrIII:4171143-4171223 1.78e-01 20_[+2(4.79e-05)]_52 chrI:11505519-11505599 1.86e-02 38_[+3(1.53e-05)]_34 chrI:3873929-3874009 8.47e-01 80 chrIV:9316266-9316346 4.23e-01 80 chrX:11935073-11935153 4.29e-01 80 chrV:19126069-19126149 2.08e-02 58_[+4(4.27e-05)]_14 chrI:6091155-6091235 7.04e-02 59_[+4(2.12e-05)]_13 chrIV:3552123-3552203 4.97e-01 80 chrX:12367650-12367730 4.54e-03 6_[+1(1.37e-05)]_66 chrX:14804838-14804918 3.38e-03 45_[+3(1.53e-05)]_27 chrI:14737450-14737530 1.42e-01 80 chrIV:620493-620573 1.87e-05 1_[+5(1.71e-05)]_33_[+1(1.37e-05)]_\ 22_[+4(8.48e-05)] chrII:5293442-5293522 1.73e-03 22_[+5(1.71e-05)]_50 chrIII:5555100-5555180 2.57e-01 80 chrI:1958516-1958596 8.75e-01 80 chrIV:796786-796866 1.93e-01 80 chrIII:640575-640655 8.87e-01 80 chrI:2410111-2410191 1.21e-03 19_[+3(7.41e-05)]_39_[+1(4.26e-05)]_\ 6 chrV:53461-53541 8.26e-03 27_[+5(1.71e-05)]_45 chrIII:2597240-2597320 7.58e-01 80 chrX:10963840-10963920 9.17e-03 80 chrIII:6551552-6551632 2.06e-01 80 chrV:6888972-6889052 1.86e-02 39_[+3(7.41e-05)]_33 chrII:14528336-14528416 8.58e-01 80 chrX:13511938-13512018 1.50e-01 62_[+1(8.12e-05)]_10 chrIII:11792788-11792868 3.68e-03 [+3(1.53e-05)]_72 chrX:9637794-9637874 2.78e-01 80 chrX:4444202-4444282 4.26e-03 72_[+5(1.71e-05)] chrX:1880833-1880913 5.28e-02 14_[+1(8.12e-05)]_58 chrIII:11119457-11119537 7.54e-01 80 chrX:6867827-6867907 3.08e-01 80 chrII:3521497-3521577 2.15e-01 4_[+1(9.60e-05)]_68 chrIII:6158744-6158824 4.19e-02 46_[+5(1.71e-05)]_26 chrV:11113354-11113434 2.35e-02 64_[+4(6.36e-05)]_8 chrIII:1604631-1604711 1.07e-02 80 chrX:6903111-6903191 2.25e-03 17_[+1(1.37e-05)]_41_[+2(4.79e-05)]_\ 6 chrIV:13386181-13386261 8.44e-01 80 chrX:8386250-8386330 3.22e-03 7_[+1(8.12e-05)]_13_[+4(4.27e-05)]_\ 44 chrIII:6887716-6887796 7.27e-02 26_[+1(1.37e-05)]_46 chrIII:1424524-1424604 7.62e-03 43_[+4(8.48e-05)]_29 chrV:7060497-7060577 1.05e-01 80 chrX:13264720-13264800 9.96e-01 80 chrX:6208046-6208126 8.44e-01 80 chrIII:5305854-5305934 3.14e-03 57_[+3(1.53e-05)]_15 chrX:15742047-15742127 2.81e-03 67_[+1(1.37e-05)]_5 chrIV:16776103-16776183 2.84e-03 59_[+4(2.12e-05)]_13 chrII:14143946-14144026 5.99e-01 80 chrIII:4470891-4470971 8.57e-03 57_[+2(2.37e-05)]_15 chrI:13310336-13310416 1.81e-01 80 chrX:6593556-6593636 9.60e-02 46_[+3(1.53e-05)]_26 chrIII:11371405-11371485 1.06e-02 58_[+2(7.34e-05)]_14 chrI:13161057-13161137 1.21e-03 16_[+5(1.71e-05)]_33_[+1(8.12e-05)]_\ 15 chrIV:16946896-16946976 3.08e-01 80 chrIII:5295023-5295103 1.45e-01 80 chrII:8547132-8547212 1.27e-01 80 chrII:6913447-6913527 4.79e-01 80 chrIV:17087567-17087647 6.75e-01 80 chrV:11610640-11610720 2.64e-01 80 chrI:1416102-1416182 6.72e-01 80 chrIV:1745604-1745684 8.38e-01 80 chrX:1858785-1858865 5.07e-04 46_[+5(1.71e-05)]_17_[+2(2.37e-05)]_\ 1 chrX:12563763-12563843 4.06e-03 31_[+3(1.53e-05)]_41 chrIII:10624735-10624815 9.45e-02 21_[+1(9.60e-05)]_51 chrV:20694145-20694225 6.75e-01 80 chrII:13199983-13200063 4.02e-01 80 chrIV:3524860-3524940 4.91e-03 12_[+1(2.87e-05)]_47_[+4(8.48e-05)]_\ 5 chrX:12670405-12670485 9.82e-01 80 chrIV:322704-322784 5.02e-01 80 chrV:1003902-1003982 1.91e-01 48_[+4(8.48e-05)]_24 chrX:1837857-1837937 1.75e-01 24_[+2(7.34e-05)]_48 chrX:15297446-15297526 5.67e-02 31_[+3(1.53e-05)]_41 chrX:3697696-3697776 9.76e-02 66_[+3(2.96e-05)]_6 chrIV:11549872-11549952 2.05e-02 2_[+1(1.37e-05)]_70 chrV:9503539-9503619 2.35e-03 29_[+3(1.53e-05)]_43 chrIV:143959-144039 6.31e-01 80 chrI:11517282-11517362 1.35e-03 20_[+5(3.33e-05)]_52 chrX:6292307-6292387 4.40e-01 80 chrI:5986341-5986421 8.01e-03 52_[+3(8.94e-05)]_20 chrI:13514350-13514430 4.96e-01 80 chrIII:11317378-11317458 7.20e-01 80 chrIV:8253004-8253084 2.18e-01 80 chrII:9774817-9774897 6.27e-01 80 chrIII:5602211-5602291 4.46e-01 80 chrII:8107261-8107341 4.09e-01 80 chrII:5292434-5292514 6.41e-02 54_[+3(7.41e-05)]_18 chrV:12596922-12597002 2.17e-01 80 chrIII:8937718-8937798 6.69e-01 80 chrII:12494714-12494794 4.42e-02 33_[+3(1.53e-05)]_39 chrIII:9861648-9861728 6.07e-02 22_[+2(7.34e-05)]_50 chrI:14113243-14113323 1.62e-01 80 chrI:8223205-8223285 6.17e-02 61_[+4(6.36e-05)]_11 chrIII:4963097-4963177 2.76e-01 80 chrX:12106144-12106224 2.86e-02 17_[+1(1.37e-05)]_55 chrX:489882-489962 2.53e-01 80 chrII:7200205-7200285 6.70e-01 80 chrI:5176405-5176485 5.37e-02 80 chrI:2935711-2935791 1.65e-03 21_[+5(1.71e-05)]_51 chrII:5105241-5105321 2.30e-01 37_[+2(7.34e-05)]_35 chrV:19643190-19643270 4.71e-02 [+1(1.37e-05)]_72 chrIII:2768808-2768888 4.35e-03 56_[+4(4.27e-05)]_16 chrV:9970270-9970350 2.33e-01 80 chrII:11484766-11484846 4.99e-02 37_[+2(7.34e-05)]_35 chrI:2514352-2514432 6.78e-02 80 chrX:13121280-13121360 2.71e-01 80 chrX:1379654-1379734 4.38e-01 80 chrI:9665173-9665253 1.41e-01 80 chrIII:10461266-10461346 1.73e-01 30_[+2(4.79e-05)]_42 chrV:9175398-9175478 9.13e-01 80 chrIV:8375563-8375643 8.18e-01 80 chrII:14059931-14060011 4.61e-01 80 chrIV:12594655-12594735 3.01e-02 80 chrI:8259530-8259610 2.50e-01 29_[+2(9.67e-05)]_43 chrIII:8678550-8678630 7.50e-01 80 chrX:353258-353338 2.25e-03 11_[+1(1.37e-05)]_41_[+2(4.79e-05)]_\ 12 chrX:3371442-3371522 7.12e-01 80 chrV:13003486-13003566 2.83e-01 80 chrI:13297657-13297737 1.21e-01 30_[+1(1.37e-05)]_42 chrV:12291753-12291833 3.00e-01 80 chrIII:502718-502798 2.17e-04 23_[+5(3.33e-05)]_32_[+1(5.54e-05)]_\ 9 chrI:6105724-6105804 2.44e-01 37_[+1(9.60e-05)]_35 chrIII:10989959-10990039 5.39e-01 80 chrI:8024773-8024853 4.35e-01 80 chrIII:13268966-13269046 2.14e-01 80 chrX:13306997-13307077 2.88e-02 49_[+5(1.71e-05)]_23 chrV:15873938-15874018 5.60e-01 80 chrX:16634850-16634930 7.25e-01 80 chrII:5032780-5032860 3.19e-02 44_[+1(5.54e-05)]_28 chrIV:11474255-11474335 6.44e-01 80 chrX:5165184-5165264 3.05e-01 80 chrIV:7574034-7574114 2.40e-02 33_[+3(7.41e-05)]_39 chrI:12198536-12198616 3.71e-01 80 chrX:9467751-9467831 1.77e-02 8_[+1(8.12e-05)]_64 chrV:5791045-5791125 3.42e-03 80 chrI:5706982-5707062 8.50e-03 13_[+5(3.33e-05)]_59 chrIV:390438-390518 3.52e-03 60_[+2(1.16e-05)]_12 chrIV:14034072-14034152 3.15e-01 80 chrIII:4689759-4689839 1.54e-01 59_[+2(7.34e-05)]_13 chrIII:12874844-12874924 1.81e-01 80 chrX:6371334-6371414 3.77e-02 80 chrX:2227233-2227313 9.99e-01 80 chrII:7184067-7184147 1.81e-01 80 chrV:12002162-12002242 1.18e-02 20_[+3(7.41e-05)]_52 chrX:12665194-12665274 1.70e-02 40_[+3(1.53e-05)]_32 chrV:16592276-16592356 7.28e-01 80 chrI:9988945-9989025 9.79e-01 80 chrIV:7039761-7039841 8.81e-01 80 chrX:3970139-3970219 2.53e-04 9_[+1(4.26e-05)]_63 chrX:13448871-13448951 4.16e-02 65_[+2(7.34e-05)]_7 chrX:11757814-11757894 1.04e-02 31_[+1(1.37e-05)]_41 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n12.farnam.hpc.yale.internal ********************************************************************************