******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/worm/fasta/RankLinear2.0_40/nhr-85.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrI:13154285-13154365 1.0000 80 chrI:13154498-13154578 1.0000 80 chrV:11087680-11087760 1.0000 80 chrX:15264307-15264387 1.0000 80 chrX:10350278-10350358 1.0000 80 chrIII:10316848-10316928 1.0000 80 chrIV:1155386-1155466 1.0000 80 chrII:4202779-4202859 1.0000 80 chrIV:3439487-3439567 1.0000 80 chrIV:7824765-7824845 1.0000 80 chrX:16998200-16998280 1.0000 80 chrV:8455127-8455207 1.0000 80 chrX:15260382-15260462 1.0000 80 chrIII:9908923-9909003 1.0000 80 chrIII:7645247-7645327 1.0000 80 chrII:2994744-2994824 1.0000 80 chrX:12008113-12008193 1.0000 80 chrV:7686362-7686442 1.0000 80 chrX:12511548-12511628 1.0000 80 chrV:12295671-12295751 1.0000 80 chrX:13120077-13120157 1.0000 80 chrX:2588177-2588257 1.0000 80 chrX:16266123-16266203 1.0000 80 chrX:4553590-4553670 1.0000 80 chrII:4918795-4918875 1.0000 80 chrII:12264116-12264196 1.0000 80 chrX:4809871-4809951 1.0000 80 chrI:14155283-14155363 1.0000 80 chrX:17421853-17421933 1.0000 80 chrI:12717189-12717269 1.0000 80 chrV:6319530-6319610 1.0000 80 chrX:2075227-2075307 1.0000 80 chrV:9147353-9147433 1.0000 80 chrIV:6427401-6427481 1.0000 80 chrII:8259794-8259874 1.0000 80 chrV:9078527-9078607 1.0000 80 chrX:3155263-3155343 1.0000 80 chrIV:8027628-8027708 1.0000 80 chrIII:11255301-11255381 1.0000 80 chrII:7807001-7807081 1.0000 80 chrI:1272527-1272607 1.0000 80 chrIII:2651686-2651766 1.0000 80 chrV:3985237-3985317 1.0000 80 chrX:6275400-6275480 1.0000 80 chrIII:4280410-4280490 1.0000 80 chrI:9334606-9334686 1.0000 80 chrV:19429773-19429853 1.0000 80 chrII:10525240-10525320 1.0000 80 chrX:17426834-17426914 1.0000 80 chrI:8986697-8986777 1.0000 80 chrV:16779117-16779197 1.0000 80 chrIII:12009918-12009998 1.0000 80 chrX:4893828-4893908 1.0000 80 chrIV:3441031-3441111 1.0000 80 chrX:13006589-13006669 1.0000 80 chrII:6610443-6610523 1.0000 80 chrII:12982131-12982211 1.0000 80 chrII:4761168-4761248 1.0000 80 chrX:14500468-14500548 1.0000 80 chrV:16780719-16780799 1.0000 80 chrIV:16398034-16398114 1.0000 80 chrII:5246938-5247018 1.0000 80 chrX:1192656-1192736 1.0000 80 chrX:13736795-13736875 1.0000 80 chrIV:9615663-9615743 1.0000 80 chrII:6821360-6821440 1.0000 80 chrII:5768435-5768515 1.0000 80 chrX:4550422-4550502 1.0000 80 chrV:14506882-14506962 1.0000 80 chrX:2709400-2709480 1.0000 80 chrII:4202979-4203059 1.0000 80 chrII:9493421-9493501 1.0000 80 chrII:9064555-9064635 1.0000 80 chrV:6254115-6254195 1.0000 80 chrIV:13080309-13080389 1.0000 80 chrIII:401052-401132 1.0000 80 chrIV:14675929-14676009 1.0000 80 chrIII:7297235-7297315 1.0000 80 chrIII:12551469-12551549 1.0000 80 chrIV:1911445-1911525 1.0000 80 chrIV:4024758-4024838 1.0000 80 chrV:5693774-5693854 1.0000 80 chrV:13358992-13359072 1.0000 80 chrI:6340130-6340210 1.0000 80 chrX:15327354-15327434 1.0000 80 chrIII:3809176-3809256 1.0000 80 chrV:20693004-20693084 1.0000 80 chrX:5810858-5810938 1.0000 80 chrIV:15617802-15617882 1.0000 80 chrV:13200744-13200824 1.0000 80 chrII:12622299-12622379 1.0000 80 chrX:16263461-16263541 1.0000 80 chrII:7792688-7792768 1.0000 80 chrV:9066078-9066158 1.0000 80 chrI:10751530-10751610 1.0000 80 chrX:13324516-13324596 1.0000 80 chrX:4569432-4569512 1.0000 80 chrV:6505593-6505673 1.0000 80 chrV:13376017-13376097 1.0000 80 chrV:15708147-15708227 1.0000 80 chrII:7090323-7090403 1.0000 80 chrX:5659812-5659892 1.0000 80 chrIII:10290708-10290788 1.0000 80 chrX:4524965-4525045 1.0000 80 chrX:2178081-2178161 1.0000 80 chrV:11616097-11616177 1.0000 80 chrIII:12847792-12847872 1.0000 80 chrV:8534049-8534129 1.0000 80 chrX:17422734-17422814 1.0000 80 chrIV:10972018-10972098 1.0000 80 chrV:11196736-11196816 1.0000 80 chrI:11784575-11784655 1.0000 80 chrIII:9666411-9666491 1.0000 80 chrIII:4456749-4456829 1.0000 80 chrV:19666492-19666572 1.0000 80 chrII:10294402-10294482 1.0000 80 chrX:9248163-9248243 1.0000 80 chrII:11020842-11020922 1.0000 80 chrX:17424433-17424513 1.0000 80 chrIV:9536281-9536361 1.0000 80 chrX:8882358-8882438 1.0000 80 chrIV:5561546-5561626 1.0000 80 chrIV:5939270-5939350 1.0000 80 chrIII:10007155-10007235 1.0000 80 chrX:10170707-10170787 1.0000 80 chrII:11852382-11852462 1.0000 80 chrIII:6132235-6132315 1.0000 80 chrV:6318082-6318162 1.0000 80 chrIV:763699-763779 1.0000 80 chrIV:8036630-8036710 1.0000 80 chrX:6277390-6277470 1.0000 80 chrX:15073021-15073101 1.0000 80 chrIV:3438194-3438274 1.0000 80 chrV:8994425-8994505 1.0000 80 chrIII:8577669-8577749 1.0000 80 chrI:5826774-5826854 1.0000 80 chrV:12299504-12299584 1.0000 80 chrIV:8824459-8824539 1.0000 80 chrII:11017023-11017103 1.0000 80 chrV:801835-801915 1.0000 80 chrV:4192822-4192902 1.0000 80 chrX:2893132-2893212 1.0000 80 chrX:17684888-17684968 1.0000 80 chrX:6279682-6279762 1.0000 80 chrX:13008250-13008330 1.0000 80 chrIII:6337915-6337995 1.0000 80 chrIII:11262287-11262367 1.0000 80 chrI:8986031-8986111 1.0000 80 chrX:5079446-5079526 1.0000 80 chrI:3752235-3752315 1.0000 80 chrII:7272684-7272764 1.0000 80 chrX:12671777-12671857 1.0000 80 chrIII:2656346-2656426 1.0000 80 chrX:16555894-16555974 1.0000 80 chrX:4927062-4927142 1.0000 80 chrI:5400371-5400451 1.0000 80 chrX:9786092-9786172 1.0000 80 chrIV:13014030-13014110 1.0000 80 chrV:13490056-13490136 1.0000 80 chrV:10387539-10387619 1.0000 80 chrI:6885328-6885408 1.0000 80 chrIV:15398782-15398862 1.0000 80 chrV:13259651-13259731 1.0000 80 chrIII:7301828-7301908 1.0000 80 chrX:7743383-7743463 1.0000 80 chrX:5803634-5803714 1.0000 80 chrX:14786893-14786973 1.0000 80 chrII:7791768-7791848 1.0000 80 chrV:8652318-8652398 1.0000 80 chrV:13333559-13333639 1.0000 80 chrV:3979961-3980041 1.0000 80 chrIV:1389204-1389284 1.0000 80 chrV:13488569-13488649 1.0000 80 chrII:9987376-9987456 1.0000 80 chrI:10691958-10692038 1.0000 80 chrI:7883821-7883901 1.0000 80 chrIV:9090761-9090841 1.0000 80 chrI:10403872-10403952 1.0000 80 chrV:9165424-9165504 1.0000 80 chrX:10302071-10302151 1.0000 80 chrV:6323139-6323219 1.0000 80 chrV:14725528-14725608 1.0000 80 chrII:4759945-4760025 1.0000 80 chrX:9547415-9547495 1.0000 80 chrI:4168002-4168082 1.0000 80 chrII:1188289-1188369 1.0000 80 chrIV:5586434-5586514 1.0000 80 chrII:2977844-2977924 1.0000 80 chrX:10630231-10630311 1.0000 80 chrII:10519160-10519240 1.0000 80 chrII:8441002-8441082 1.0000 80 chrX:3932811-3932891 1.0000 80 chrX:9848783-9848863 1.0000 80 chrX:4877075-4877155 1.0000 80 chrX:6323294-6323374 1.0000 80 chrX:12518092-12518172 1.0000 80 chrV:13788068-13788148 1.0000 80 chrX:10769524-10769604 1.0000 80 chrIV:9618176-9618256 1.0000 80 chrV:12554304-12554384 1.0000 80 chrII:11838476-11838556 1.0000 80 chrV:6830920-6831000 1.0000 80 chrII:12991714-12991794 1.0000 80 chrII:5210975-5211055 1.0000 80 chrII:7802105-7802185 1.0000 80 chrV:10460836-10460916 1.0000 80 chrIV:13075804-13075884 1.0000 80 chrV:9633414-9633494 1.0000 80 chrV:8662355-8662435 1.0000 80 chrI:7216733-7216813 1.0000 80 chrX:16784179-16784259 1.0000 80 chrV:9654256-9654336 1.0000 80 chrII:7342095-7342175 1.0000 80 chrX:9549081-9549161 1.0000 80 chrX:8010770-8010850 1.0000 80 chrII:13680074-13680154 1.0000 80 chrV:11531201-11531281 1.0000 80 chrV:15959592-15959672 1.0000 80 chrII:11836711-11836791 1.0000 80 chrIV:12045047-12045127 1.0000 80 chrX:5603520-5603600 1.0000 80 chrX:6318944-6319024 1.0000 80 chrV:12557189-12557269 1.0000 80 chrI:14323715-14323795 1.0000 80 chrI:7761560-7761640 1.0000 80 chrII:9561050-9561130 1.0000 80 chrIII:6364511-6364591 1.0000 80 chrV:13790734-13790814 1.0000 80 chrX:14508123-14508203 1.0000 80 chrX:9638958-9639038 1.0000 80 chrX:3837866-3837946 1.0000 80 chrIII:13710845-13710925 1.0000 80 chrIV:5563467-5563547 1.0000 80 chrI:6555425-6555505 1.0000 80 chrX:4551101-4551181 1.0000 80 chrIV:14482271-14482351 1.0000 80 chrII:11138258-11138338 1.0000 80 chrIII:564901-564981 1.0000 80 chrIV:1716069-1716149 1.0000 80 chrV:6503359-6503439 1.0000 80 chrII:9032155-9032235 1.0000 80 chrV:13374651-13374731 1.0000 80 chrII:6619199-6619279 1.0000 80 chrX:12176988-12177068 1.0000 80 chrV:11533113-11533193 1.0000 80 chrV:5410822-5410902 1.0000 80 chrX:8584953-8585033 1.0000 80 chrV:8653497-8653577 1.0000 80 chrX:13315281-13315361 1.0000 80 chrI:13650886-13650966 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/worm/inference_raw/MEME/RankLinear2.0_40_nhr-85/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/worm/fasta/RankLinear2.0_40/nhr-85.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.293 C 0.204 G 0.199 T 0.304 Background letter frequencies (from file dataset with add-one prior applied): A 0.293 C 0.204 G 0.199 T 0.304 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF AGGTCATK MEME-1 width = 8 sites = 30 llr = 258 E-value = 7.4e-002 ******************************************************************************** -------------------------------------------------------------------------------- Motif AGGTCATK MEME-1 Description -------------------------------------------------------------------------------- Simplified A 7::::a2: pos.-specific C ::::a:31 probability G :aa::::5 matrix T 3::a::65 bits 2.3 ** * 2.1 ** * 1.9 ** ** 1.6 ***** Relative 1.4 ***** Entropy 1.2 ***** (12.4 bits) 0.9 ****** 0.7 ****** * 0.5 ******** 0.2 ******** 0.0 -------- Multilevel AGGTCATG consensus T CT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGGTCATK MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:12176988-12177068 10 1.28e-05 ACGTTGGCA AGGTCATG GACATTGTTC chrII:11138258-11138338 31 1.28e-05 TGTTAAAAAA AGGTCATG ACCTACTTTT chrI:4168002-4168082 35 1.28e-05 CTTAAAAAGT AGGTCATG ACTTATTTTT chrIII:6337915-6337995 41 1.28e-05 TTTAAAAATT AGGTCATG ACCTATTTTT chrII:4202979-4203059 23 1.28e-05 GTTAAAAAGT AGGTCATG ACCCACTTTT chrI:12717189-12717269 14 1.28e-05 TTAAAAAAGT AGGTCATG ACCTATTTTT chrII:4202779-4202859 23 1.28e-05 GTTAAAAAGT AGGTCATG ACTCACTTTT chrIII:10316848-10316928 70 1.28e-05 CTTAAAAAGT AGGTCATG GCC chrI:13154498-13154578 16 1.28e-05 ATTAAAAAGT AGGTCATG ACCTAAATTT chrI:13154285-13154365 73 1.28e-05 CTTAAAAAGT AGGTCATG chrX:4569432-4569512 19 4.08e-05 ACAAATCTGA AGGTCATT TTTTCACATC chrIV:1155386-1155466 17 4.08e-05 GCGGATAAGA AGGTCATT TTCGGTGTCT chrX:8584953-8585033 4 5.39e-05 AAA AGGTCACT CCTTAGAAAC chrX:10302071-10302151 65 5.39e-05 GTGTATCTAA AGGTCACT CTTCAAGT chrI:7883821-7883901 34 5.39e-05 CACTGGAGAG AGGTCACT TTGCTTATTG chrV:10387539-10387619 62 5.39e-05 CTGTCTTGTA AGGTCACT CACTGATACT chrX:12518092-12518172 4 6.71e-05 GTT TGGTCATG TTGGTCTGTT chrV:6254115-6254195 65 7.94e-05 GGTATCCAAT AGGTCAAG TGACGATT chrV:14725528-14725608 22 1.08e-04 ACTTCGTACA TGGTCATT AACCATATGT chrX:2709400-2709480 24 1.08e-04 ATACAATTCA TGGTCATT ACGCGGAACA chrX:9848783-9848863 2 1.27e-04 A AGGTCAAT GTTATCAGAA chrI:3752235-3752315 56 1.27e-04 CCTCCCGGCA AGGTCAAT TACAAGTCGA chrI:7216733-7216813 54 1.41e-04 TACCATTAGG TGGTCACT GTCGGTACCA chrX:16555894-16555974 1 1.41e-04 . TGGTCACT CACCTTGAAA chrX:8882358-8882438 21 1.41e-04 GCAATCATGG TGGTCAct ctctctctct chrX:4809871-4809951 63 1.54e-04 GTGATTTCTA AGGTCATC ACGTTTTTTG chrX:16784179-16784259 25 1.75e-04 AAAGTAACGA AGGTCACC GAGAGATCGA chrV:13259651-13259731 1 1.75e-04 . TGGTCAAG TGGTTGAAAA chrI:14155283-14155363 19 1.95e-04 ACGGGGGTAG TGGTCAAT GTCCTTGAAA chrII:10525240-10525320 30 2.17e-04 GACGTTTCGA AGGCCATG ACTTCTCTAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGGTCATK MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:12176988-12177068 1.3e-05 9_[+1]_63 chrII:11138258-11138338 1.3e-05 30_[+1]_42 chrI:4168002-4168082 1.3e-05 34_[+1]_38 chrIII:6337915-6337995 1.3e-05 40_[+1]_32 chrII:4202979-4203059 1.3e-05 22_[+1]_50 chrI:12717189-12717269 1.3e-05 13_[+1]_59 chrII:4202779-4202859 1.3e-05 22_[+1]_50 chrIII:10316848-10316928 1.3e-05 69_[+1]_3 chrI:13154498-13154578 1.3e-05 15_[+1]_57 chrI:13154285-13154365 1.3e-05 72_[+1] chrX:4569432-4569512 4.1e-05 18_[+1]_54 chrIV:1155386-1155466 4.1e-05 16_[+1]_56 chrX:8584953-8585033 5.4e-05 3_[+1]_69 chrX:10302071-10302151 5.4e-05 64_[+1]_8 chrI:7883821-7883901 5.4e-05 33_[+1]_39 chrV:10387539-10387619 5.4e-05 61_[+1]_11 chrX:12518092-12518172 6.7e-05 3_[+1]_69 chrV:6254115-6254195 7.9e-05 64_[+1]_8 chrV:14725528-14725608 0.00011 21_[+1]_51 chrX:2709400-2709480 0.00011 23_[+1]_49 chrX:9848783-9848863 0.00013 1_[+1]_71 chrI:3752235-3752315 0.00013 55_[+1]_17 chrI:7216733-7216813 0.00014 53_[+1]_19 chrX:16555894-16555974 0.00014 [+1]_72 chrX:8882358-8882438 0.00014 20_[+1]_52 chrX:4809871-4809951 0.00015 62_[+1]_10 chrX:16784179-16784259 0.00018 24_[+1]_48 chrV:13259651-13259731 0.00018 [+1]_72 chrI:14155283-14155363 0.00019 18_[+1]_54 chrII:10525240-10525320 0.00022 29_[+1]_43 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGGTCATK MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AGGTCATK width=8 seqs=30 chrX:12176988-12177068 ( 10) AGGTCATG 1 chrII:11138258-11138338 ( 31) AGGTCATG 1 chrI:4168002-4168082 ( 35) AGGTCATG 1 chrIII:6337915-6337995 ( 41) AGGTCATG 1 chrII:4202979-4203059 ( 23) AGGTCATG 1 chrI:12717189-12717269 ( 14) AGGTCATG 1 chrII:4202779-4202859 ( 23) AGGTCATG 1 chrIII:10316848-10316928 ( 70) AGGTCATG 1 chrI:13154498-13154578 ( 16) AGGTCATG 1 chrI:13154285-13154365 ( 73) AGGTCATG 1 chrX:4569432-4569512 ( 19) AGGTCATT 1 chrIV:1155386-1155466 ( 17) AGGTCATT 1 chrX:8584953-8585033 ( 4) AGGTCACT 1 chrX:10302071-10302151 ( 65) AGGTCACT 1 chrI:7883821-7883901 ( 34) AGGTCACT 1 chrV:10387539-10387619 ( 62) AGGTCACT 1 chrX:12518092-12518172 ( 4) TGGTCATG 1 chrV:6254115-6254195 ( 65) AGGTCAAG 1 chrV:14725528-14725608 ( 22) TGGTCATT 1 chrX:2709400-2709480 ( 24) TGGTCATT 1 chrX:9848783-9848863 ( 2) AGGTCAAT 1 chrI:3752235-3752315 ( 56) AGGTCAAT 1 chrI:7216733-7216813 ( 54) TGGTCACT 1 chrX:16555894-16555974 ( 1) TGGTCACT 1 chrX:8882358-8882438 ( 21) TGGTCACT 1 chrX:4809871-4809951 ( 63) AGGTCATC 1 chrX:16784179-16784259 ( 25) AGGTCACC 1 chrV:13259651-13259731 ( 1) TGGTCAAG 1 chrI:14155283-14155363 ( 19) TGGTCAAT 1 chrII:10525240-10525320 ( 30) AGGCCATG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGGTCATK MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.5224 E= 7.4e-002 132 -1155 -1155 -19 -1155 -1155 233 -1155 -1155 -1155 233 -1155 -1155 -261 -1155 167 -1155 229 -1155 -1155 177 -1155 -1155 -1155 -81 39 -1155 90 -1155 -161 123 62 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGGTCATK MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 30 E= 7.4e-002 0.733333 0.000000 0.000000 0.266667 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.033333 0.000000 0.966667 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.166667 0.266667 0.000000 0.566667 0.000000 0.066667 0.466667 0.466667 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGGTCATK MEME-1 regular expression -------------------------------------------------------------------------------- [AT]GGTCA[TC][GT] -------------------------------------------------------------------------------- Time 9.92 secs. ******************************************************************************** ******************************************************************************** MOTIF VARAGAGA MEME-2 width = 8 sites = 52 llr = 401 E-value = 4.7e-005 ******************************************************************************** -------------------------------------------------------------------------------- Motif VARAGAGA MEME-2 Description -------------------------------------------------------------------------------- Simplified A 4a48:a3a pos.-specific C 2:::::2: probability G 4:62a:6: matrix T :::::::: bits 2.3 2.1 * 1.9 * ** * 1.6 * ** * Relative 1.4 * ** * Entropy 1.2 ***** * (11.1 bits) 0.9 ***** * 0.7 ******* 0.5 ******** 0.2 ******** 0.0 -------- Multilevel AAGAGAGA consensus G AG A sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VARAGAGA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIV:5563467-5563547 71 1.16e-05 Aagagaaaaa gagagaga ga chrIV:5586434-5586514 52 1.16e-05 CTGGTAAAGT GAGAGAGA TGAGGAacac chrI:10403872-10403952 68 1.16e-05 gagagaaatt gagagaga aatag chrV:13376017-13376097 59 1.16e-05 gaagaagTCA GAGAGAGA CGCTACAGAG chrIV:1911445-1911525 70 1.16e-05 GAGGCAAAAA GAGAGAGA CTT chrI:14155283-14155363 68 1.16e-05 ACGTGACAAG GAGAGAGA CAAGG chrX:4553590-4553670 45 1.16e-05 gcgggagcga gagagaga CAAAAATTCG chrII:7090323-7090403 24 2.86e-05 GCGTGCGAGA AAGAGAGA CGCAGGCTGA chrX:5810858-5810938 50 2.86e-05 AAAGAAAAGA AAGAGAGA TGAATTTTAC chrIII:3809176-3809256 39 2.86e-05 aaaacaaaaa aagagaga taaagagaaa chrII:12991714-12991794 22 4.04e-05 CACTTTGAGG CAGAGAGA GTTCCACTGA chrI:6885328-6885408 54 4.04e-05 AAGAGAAACA CAGAGAGA CCCGAACAAA chrII:11852382-11852462 63 4.04e-05 AAAGACCGAT CAGAGAGA TGACACCGCA chrX:13324516-13324596 57 4.04e-05 TCAGGTTTGG CAGAGAGA TGGGCACCAC chrII:10525240-10525320 73 4.04e-05 ATAGTATTTT CAGAGAGA chrV:3979961-3980041 70 4.83e-05 TGGAGTGAGA GAGGGAGA AGA chrV:11533113-11533193 51 6.53e-05 AATCGAAAGT GAAAGAGA AAGGAGATGA chrV:15959592-15959672 43 9.42e-05 TTTTGAACTT GAGAGACA ACAAATGCAC chrIII:10007155-10007235 50 9.42e-05 ATCAACAAGT GAGAGAAA ACCGGTTTAT chrX:12511548-12511628 40 1.06e-04 GAAAGTACTA AAGGGAGA TAGTTTATCT chrV:9633414-9633494 39 1.39e-04 GTTTGAAATC AAAAGAGA CGTAGAGAAA chrV:12554304-12554384 44 1.39e-04 CAAGGAAGAA AAAAGAGA AATGGAATGT chrII:2977844-2977924 42 1.39e-04 ACATCATCTT AAAAGAGA AAACTGGTTC chrX:5079446-5079526 10 1.39e-04 TATCAACAA AAAAGAGA TAGACTGTAC chrIII:11262287-11262367 8 1.39e-04 CAAATTC AAAAGAGA TTACAAAAAG chrX:16998200-16998280 53 1.39e-04 TCATATATCA AAAAGAGA GTGTTTTTGA chrII:6619199-6619279 50 1.99e-04 TGGAAAAATT AAGAGACA TAGACAGACA chrII:11020842-11020922 12 1.99e-04 ATAAATTGTC AAGAGAAA ATGAAAAAAA chrII:7792688-7792768 2 1.99e-04 A AAGAGACA AGTTTGAGGG chrV:9147353-9147433 1 1.99e-04 . AAGAGACA GTAATGAGAC chrI:13650886-13650966 12 2.28e-04 cgcagagatg cagagaaa gGCCTCCGCG chrIV:8036630-8036710 17 2.28e-04 GCATCAAATA CAGAGACA GTTCTCTTTT chrIV:14675929-14676009 16 2.28e-04 TACCGTGACG CAGAGAAA TAGACATTAT chrX:17426834-17426914 69 2.28e-04 GCACGGAATG CAGAGAAA AAAC chrI:7883821-7883901 66 2.60e-04 GGCACCACTA GAGGGACA CATGAGA chrIII:12847792-12847872 59 2.60e-04 CATCGGAAGA GAGGGAAA AGATAAGAAA chrV:6505593-6505673 45 2.60e-04 TCAGAAGAAC GAGGGAAA AGAGGAAAAG chrX:2075227-2075307 68 2.60e-04 CACTTTCAAT GAGGGACA AATTG chrIV:9090761-9090841 29 3.02e-04 TAAACATTTT GAAAGAAA AAAACATTAG chrV:13259651-13259731 30 3.02e-04 GATGGAGGAA GAAAGAAA CATTTGGAAG chrX:16555894-16555974 15 3.02e-04 CACTCACCTT GAAAGACA GATAAAGCAG chrX:15264307-15264387 47 3.02e-04 ACGGCTTCGG GAAAGAAA CAACTGCAGC chrIV:5939270-5939350 57 3.19e-04 ATGATGAAGA AAAGGAGA GTGACGTGGC chrIII:12551469-12551549 26 3.19e-04 TTAATGAAAA AAAGGAGA GTGTGATCGT chrV:13374651-13374731 2 3.60e-04 C CAAGGAGA AGGACTACTA chrX:15073021-15073101 42 3.60e-04 GGCCCGCAAA AAGGGAAA ACGATTGATC chrIII:9908923-9909003 48 3.60e-04 ATTCTGAATA CAAGGAGA CGCCCATTTC chrV:9165424-9165504 5 4.42e-04 GTGC AAAAGACA ACAAAATTCA chrV:9066078-9066158 45 4.42e-04 TAATAGCCAG AAAAGAAA TTGAAATTTC chrII:9493421-9493501 6 4.42e-04 AAAAA AAAAGAAA AGTCGAGTGC chrX:10302071-10302151 10 4.86e-04 AAACTTTAA CAAAGAAA CATGCCTTGT chrII:8259794-8259874 1 6.04e-04 . GAGAAAGA GGTTGAAGAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VARAGAGA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:5563467-5563547 1.2e-05 70_[+2]_2 chrIV:5586434-5586514 1.2e-05 51_[+2]_21 chrI:10403872-10403952 1.2e-05 67_[+2]_5 chrV:13376017-13376097 1.2e-05 58_[+2]_14 chrIV:1911445-1911525 1.2e-05 69_[+2]_3 chrI:14155283-14155363 1.2e-05 67_[+2]_5 chrX:4553590-4553670 1.2e-05 44_[+2]_28 chrII:7090323-7090403 2.9e-05 23_[+2]_49 chrX:5810858-5810938 2.9e-05 49_[+2]_23 chrIII:3809176-3809256 2.9e-05 38_[+2]_34 chrII:12991714-12991794 4e-05 21_[+2]_51 chrI:6885328-6885408 4e-05 53_[+2]_19 chrII:11852382-11852462 4e-05 62_[+2]_10 chrX:13324516-13324596 4e-05 56_[+2]_16 chrII:10525240-10525320 4e-05 72_[+2] chrV:3979961-3980041 4.8e-05 69_[+2]_3 chrV:11533113-11533193 6.5e-05 50_[+2]_22 chrV:15959592-15959672 9.4e-05 42_[+2]_30 chrIII:10007155-10007235 9.4e-05 49_[+2]_23 chrX:12511548-12511628 0.00011 39_[+2]_33 chrV:9633414-9633494 0.00014 38_[+2]_34 chrV:12554304-12554384 0.00014 43_[+2]_29 chrII:2977844-2977924 0.00014 41_[+2]_31 chrX:5079446-5079526 0.00014 9_[+2]_63 chrIII:11262287-11262367 0.00014 7_[+2]_65 chrX:16998200-16998280 0.00014 52_[+2]_20 chrII:6619199-6619279 0.0002 49_[+2]_23 chrII:11020842-11020922 0.0002 11_[+2]_61 chrII:7792688-7792768 0.0002 1_[+2]_71 chrV:9147353-9147433 0.0002 [+2]_72 chrI:13650886-13650966 0.00023 11_[+2]_61 chrIV:8036630-8036710 0.00023 16_[+2]_56 chrIV:14675929-14676009 0.00023 15_[+2]_57 chrX:17426834-17426914 0.00023 68_[+2]_4 chrI:7883821-7883901 0.00026 65_[+2]_7 chrIII:12847792-12847872 0.00026 58_[+2]_14 chrV:6505593-6505673 0.00026 44_[+2]_28 chrX:2075227-2075307 0.00026 67_[+2]_5 chrIV:9090761-9090841 0.0003 28_[+2]_44 chrV:13259651-13259731 0.0003 29_[+2]_43 chrX:16555894-16555974 0.0003 14_[+2]_58 chrX:15264307-15264387 0.0003 46_[+2]_26 chrIV:5939270-5939350 0.00032 56_[+2]_16 chrIII:12551469-12551549 0.00032 25_[+2]_47 chrV:13374651-13374731 0.00036 1_[+2]_71 chrX:15073021-15073101 0.00036 41_[+2]_31 chrIII:9908923-9909003 0.00036 47_[+2]_25 chrV:9165424-9165504 0.00044 4_[+2]_68 chrV:9066078-9066158 0.00044 44_[+2]_28 chrII:9493421-9493501 0.00044 5_[+2]_67 chrX:10302071-10302151 0.00049 9_[+2]_63 chrII:8259794-8259874 0.0006 [+2]_72 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VARAGAGA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF VARAGAGA width=8 seqs=52 chrIV:5563467-5563547 ( 71) GAGAGAGA 1 chrIV:5586434-5586514 ( 52) GAGAGAGA 1 chrI:10403872-10403952 ( 68) GAGAGAGA 1 chrV:13376017-13376097 ( 59) GAGAGAGA 1 chrIV:1911445-1911525 ( 70) GAGAGAGA 1 chrI:14155283-14155363 ( 68) GAGAGAGA 1 chrX:4553590-4553670 ( 45) GAGAGAGA 1 chrII:7090323-7090403 ( 24) AAGAGAGA 1 chrX:5810858-5810938 ( 50) AAGAGAGA 1 chrIII:3809176-3809256 ( 39) AAGAGAGA 1 chrII:12991714-12991794 ( 22) CAGAGAGA 1 chrI:6885328-6885408 ( 54) CAGAGAGA 1 chrII:11852382-11852462 ( 63) CAGAGAGA 1 chrX:13324516-13324596 ( 57) CAGAGAGA 1 chrII:10525240-10525320 ( 73) CAGAGAGA 1 chrV:3979961-3980041 ( 70) GAGGGAGA 1 chrV:11533113-11533193 ( 51) GAAAGAGA 1 chrV:15959592-15959672 ( 43) GAGAGACA 1 chrIII:10007155-10007235 ( 50) GAGAGAAA 1 chrX:12511548-12511628 ( 40) AAGGGAGA 1 chrV:9633414-9633494 ( 39) AAAAGAGA 1 chrV:12554304-12554384 ( 44) AAAAGAGA 1 chrII:2977844-2977924 ( 42) AAAAGAGA 1 chrX:5079446-5079526 ( 10) AAAAGAGA 1 chrIII:11262287-11262367 ( 8) AAAAGAGA 1 chrX:16998200-16998280 ( 53) AAAAGAGA 1 chrII:6619199-6619279 ( 50) AAGAGACA 1 chrII:11020842-11020922 ( 12) AAGAGAAA 1 chrII:7792688-7792768 ( 2) AAGAGACA 1 chrV:9147353-9147433 ( 1) AAGAGACA 1 chrI:13650886-13650966 ( 12) CAGAGAAA 1 chrIV:8036630-8036710 ( 17) CAGAGACA 1 chrIV:14675929-14676009 ( 16) CAGAGAAA 1 chrX:17426834-17426914 ( 69) CAGAGAAA 1 chrI:7883821-7883901 ( 66) GAGGGACA 1 chrIII:12847792-12847872 ( 59) GAGGGAAA 1 chrV:6505593-6505673 ( 45) GAGGGAAA 1 chrX:2075227-2075307 ( 68) GAGGGACA 1 chrIV:9090761-9090841 ( 29) GAAAGAAA 1 chrV:13259651-13259731 ( 30) GAAAGAAA 1 chrX:16555894-16555974 ( 15) GAAAGACA 1 chrX:15264307-15264387 ( 47) GAAAGAAA 1 chrIV:5939270-5939350 ( 57) AAAGGAGA 1 chrIII:12551469-12551549 ( 26) AAAGGAGA 1 chrV:13374651-13374731 ( 2) CAAGGAGA 1 chrX:15073021-15073101 ( 42) AAGGGAAA 1 chrIII:9908923-9909003 ( 48) CAAGGAGA 1 chrV:9165424-9165504 ( 5) AAAAGACA 1 chrV:9066078-9066158 ( 45) AAAAGAAA 1 chrII:9493421-9493501 ( 6) AAAAGAAA 1 chrX:10302071-10302151 ( 10) CAAAGAAA 1 chrII:8259794-8259874 ( 1) GAGAAAGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VARAGAGA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.0839 E= 4.7e-005 39 18 95 -1234 177 -1234 -1234 -1234 32 -1234 167 -1234 143 -1234 9 -1234 -393 -1234 230 -1234 177 -1234 -1234 -1234 -12 -24 149 -1234 177 -1234 -1234 -1234 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VARAGAGA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 52 E= 4.7e-005 0.384615 0.230769 0.384615 0.000000 1.000000 0.000000 0.000000 0.000000 0.365385 0.000000 0.634615 0.000000 0.788462 0.000000 0.211538 0.000000 0.019231 0.000000 0.980769 0.000000 1.000000 0.000000 0.000000 0.000000 0.269231 0.173077 0.557692 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VARAGAGA MEME-2 regular expression -------------------------------------------------------------------------------- [AGC]A[GA][AG]GA[GA]A -------------------------------------------------------------------------------- Time 15.49 secs. ******************************************************************************** ******************************************************************************** MOTIF TCTYTYTC MEME-3 width = 8 sites = 39 llr = 314 E-value = 6.1e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif TCTYTYTC MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C :7:436:a probability G :1:::::: matrix T a2a674a: bits 2.3 * 2.1 * 1.9 * 1.6 * * ** Relative 1.4 * * ** Entropy 1.2 *** *** (11.6 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TCTTTCTC consensus T CCT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTYTYTC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIV:14482271-14482351 7 2.20e-05 AATTCC TCTTTCTC TCCATCTTCG chrII:1188289-1188369 16 2.20e-05 cctctctccc tctttctc tgcgtctcca chrIII:2656346-2656426 38 2.20e-05 GTACTATTTC TCTTTCTC TCCGGGGTAA chrI:3752235-3752315 35 2.20e-05 CATCTCGCTC TCTTTCTC CTGCCTCCCG chrI:6340130-6340210 4 2.20e-05 gtt tctttctc tttactctta chrX:4893828-4893908 67 2.20e-05 TCTCCGTCTT TCTTTCTC TACGTT chrV:13374651-13374731 44 3.68e-05 AGGTCTTTtc tctctctc tctctccctc chrV:12554304-12554384 3 3.68e-05 TC TCTCTCTC TCATTTTAAC chrV:14725528-14725608 44 3.68e-05 ATATGTTGTA TCTCTCTC AAGTCCACCT chrIV:15398782-15398862 2 3.68e-05 c tctctctc tcCACTAAAT chrIV:8036630-8036710 35 3.68e-05 GTTCTCTTTT TCTCTCTC TTTTCTCGAT chrIV:763699-763779 52 3.68e-05 CAAGGACAGT TCTCTCTC CGTTTTCCAA chrIV:5561546-5561626 2 3.68e-05 c tctctctc tTTTTCTCTA chrIII:4456749-4456829 70 3.68e-05 cctctctctc tctctctc tct chrX:6279682-6279762 18 5.16e-05 CAGTCTCGCT TCTTCCTC TTTGCTATTT chrIV:7824765-7824845 6 5.16e-05 CTATA TCTTCCTC ATCACCTAAC chrX:5659812-5659892 54 6.16e-05 CTTCTTCTCA TCTCCCTC CGTGTGTCTC chrV:6503359-6503439 17 9.44e-05 TACTCGTTTT TCTTTTTC AGTAATGCTG chrV:12299504-12299584 50 9.44e-05 tAACATCTTC TCTTTTTC TTCTCCTATT chrV:19666492-19666572 22 9.44e-05 CACTGGGTGG TCTTTTTC TGTCTGCGTC chrIII:564901-564981 63 1.16e-04 GCGCCCGTGG TCTCTTTC CTGTCTGCGT chrX:2588177-2588257 38 1.16e-04 ACACGCAGTT TCTCTTTC AATGTTATTT chrIV:5563467-5563547 38 1.38e-04 ATTGTTCCGA TCTTCTTC GTTGCGAAAG chrI:7761560-7761640 49 1.38e-04 AAATCACACA TCTTCTTC GAAACAGGAA chrX:9549081-9549161 16 1.38e-04 GTATCGTTCA TCTTCTTC ATCACAAATA chrV:3979961-3980041 25 1.38e-04 CAGTGGTTGA TCTTCTTC GTGACCGCGT chrV:8994425-8994505 39 1.38e-04 TTTTTCACTT TCTTCTTC TTTTTGTCGT chrII:4761168-4761248 21 1.38e-04 GTCATTTTTT TCTTCTTC ATTTTTTCTT chrX:10769524-10769604 53 1.86e-04 TTCTCTCGTA TTTTTCTC GGTTAGGGGT chrX:9547415-9547495 14 1.86e-04 TACCTGATGA TTTTTCTC TGCGAATTGA chrIV:8824459-8824539 53 1.86e-04 AATCTTCCGC TTTTTCTC GCTAATTTCT chrX:9848783-9848863 29 2.45e-04 ATCTATCAAA TTTCCCTC AATAAGGTGT chrII:9561050-9561130 29 2.94e-04 TCGCTCTTCG TTTTTTTC TATCTAAAAC chrI:10751530-10751610 39 2.94e-04 TCGAAATTTC TTTTTTTC GTTACTCTTC chrV:20693004-20693084 36 3.27e-04 CTATTTCTCT TTTCTTTC CCTTCTTCCA chrX:17422734-17422814 47 3.48e-04 AACAACGTCT TGTTTCTC TTTTCGTGTG chrX:13006589-13006669 70 3.96e-04 CCAACGCAAA TTTTCTTC TTT chrIV:1155386-1155466 45 3.96e-04 TTTCTGTCTG TGTCTCTC ATTTTCTTGT chrX:6275400-6275480 2 4.18e-04 A TTTCCTTC ACTCTAACAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTYTYTC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:14482271-14482351 2.2e-05 6_[+3]_66 chrII:1188289-1188369 2.2e-05 15_[+3]_57 chrIII:2656346-2656426 2.2e-05 37_[+3]_35 chrI:3752235-3752315 2.2e-05 34_[+3]_38 chrI:6340130-6340210 2.2e-05 3_[+3]_69 chrX:4893828-4893908 2.2e-05 66_[+3]_6 chrV:13374651-13374731 3.7e-05 43_[+3]_29 chrV:12554304-12554384 3.7e-05 2_[+3]_70 chrV:14725528-14725608 3.7e-05 43_[+3]_29 chrIV:15398782-15398862 3.7e-05 1_[+3]_71 chrIV:8036630-8036710 3.7e-05 34_[+3]_38 chrIV:763699-763779 3.7e-05 51_[+3]_21 chrIV:5561546-5561626 3.7e-05 1_[+3]_71 chrIII:4456749-4456829 3.7e-05 69_[+3]_3 chrX:6279682-6279762 5.2e-05 17_[+3]_55 chrIV:7824765-7824845 5.2e-05 5_[+3]_67 chrX:5659812-5659892 6.2e-05 53_[+3]_19 chrV:6503359-6503439 9.4e-05 16_[+3]_56 chrV:12299504-12299584 9.4e-05 49_[+3]_23 chrV:19666492-19666572 9.4e-05 21_[+3]_51 chrIII:564901-564981 0.00012 62_[+3]_10 chrX:2588177-2588257 0.00012 37_[+3]_35 chrIV:5563467-5563547 0.00014 37_[+3]_35 chrI:7761560-7761640 0.00014 48_[+3]_24 chrX:9549081-9549161 0.00014 15_[+3]_57 chrV:3979961-3980041 0.00014 24_[+3]_48 chrV:8994425-8994505 0.00014 38_[+3]_34 chrII:4761168-4761248 0.00014 20_[+3]_52 chrX:10769524-10769604 0.00019 52_[+3]_20 chrX:9547415-9547495 0.00019 13_[+3]_59 chrIV:8824459-8824539 0.00019 52_[+3]_20 chrX:9848783-9848863 0.00024 28_[+3]_44 chrII:9561050-9561130 0.00029 28_[+3]_44 chrI:10751530-10751610 0.00029 38_[+3]_34 chrV:20693004-20693084 0.00033 35_[+3]_37 chrX:17422734-17422814 0.00035 46_[+3]_26 chrX:13006589-13006669 0.0004 69_[+3]_3 chrIV:1155386-1155466 0.0004 44_[+3]_28 chrX:6275400-6275480 0.00042 1_[+3]_71 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTYTYTC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TCTYTYTC width=8 seqs=39 chrIV:14482271-14482351 ( 7) TCTTTCTC 1 chrII:1188289-1188369 ( 16) TCTTTCTC 1 chrIII:2656346-2656426 ( 38) TCTTTCTC 1 chrI:3752235-3752315 ( 35) TCTTTCTC 1 chrI:6340130-6340210 ( 4) TCTTTCTC 1 chrX:4893828-4893908 ( 67) TCTTTCTC 1 chrV:13374651-13374731 ( 44) TCTCTCTC 1 chrV:12554304-12554384 ( 3) TCTCTCTC 1 chrV:14725528-14725608 ( 44) TCTCTCTC 1 chrIV:15398782-15398862 ( 2) TCTCTCTC 1 chrIV:8036630-8036710 ( 35) TCTCTCTC 1 chrIV:763699-763779 ( 52) TCTCTCTC 1 chrIV:5561546-5561626 ( 2) TCTCTCTC 1 chrIII:4456749-4456829 ( 70) TCTCTCTC 1 chrX:6279682-6279762 ( 18) TCTTCCTC 1 chrIV:7824765-7824845 ( 6) TCTTCCTC 1 chrX:5659812-5659892 ( 54) TCTCCCTC 1 chrV:6503359-6503439 ( 17) TCTTTTTC 1 chrV:12299504-12299584 ( 50) TCTTTTTC 1 chrV:19666492-19666572 ( 22) TCTTTTTC 1 chrIII:564901-564981 ( 63) TCTCTTTC 1 chrX:2588177-2588257 ( 38) TCTCTTTC 1 chrIV:5563467-5563547 ( 38) TCTTCTTC 1 chrI:7761560-7761640 ( 49) TCTTCTTC 1 chrX:9549081-9549161 ( 16) TCTTCTTC 1 chrV:3979961-3980041 ( 25) TCTTCTTC 1 chrV:8994425-8994505 ( 39) TCTTCTTC 1 chrII:4761168-4761248 ( 21) TCTTCTTC 1 chrX:10769524-10769604 ( 53) TTTTTCTC 1 chrX:9547415-9547495 ( 14) TTTTTCTC 1 chrIV:8824459-8824539 ( 53) TTTTTCTC 1 chrX:9848783-9848863 ( 29) TTTCCCTC 1 chrII:9561050-9561130 ( 29) TTTTTTTC 1 chrI:10751530-10751610 ( 39) TTTTTTTC 1 chrV:20693004-20693084 ( 36) TTTCTTTC 1 chrX:17422734-17422814 ( 47) TGTTTCTC 1 chrX:13006589-13006669 ( 70) TTTTCTTC 1 chrIV:1155386-1155466 ( 45) TGTCTCTC 1 chrX:6275400-6275480 ( 2) TTTCCTTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTYTYTC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.3267 E= 6.1e-001 -1193 -1193 -1193 172 -1193 181 -195 -40 -1193 -1193 -1193 172 -1193 91 -1193 102 -1193 59 -1193 119 -1193 153 -1193 43 -1193 -1193 -1193 172 -1193 229 -1193 -1193 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTYTYTC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 39 E= 6.1e-001 0.000000 0.000000 0.000000 1.000000 0.000000 0.717949 0.051282 0.230769 0.000000 0.000000 0.000000 1.000000 0.000000 0.384615 0.000000 0.615385 0.000000 0.307692 0.000000 0.692308 0.000000 0.589744 0.000000 0.410256 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTYTYTC MEME-3 regular expression -------------------------------------------------------------------------------- T[CT]T[TC][TC][CT]TC -------------------------------------------------------------------------------- Time 19.15 secs. ******************************************************************************** ******************************************************************************** MOTIF ACCGGTTT MEME-4 width = 8 sites = 16 llr = 157 E-value = 4.0e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif ACCGGTTT MEME-4 Description -------------------------------------------------------------------------------- Simplified A a3:3:::: pos.-specific C :7a::::: probability G :::8a::: matrix T :::::aaa bits 2.3 * * 2.1 * * 1.9 * * * 1.6 * * **** Relative 1.4 * ****** Entropy 1.2 ******** (14.2 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel ACCGGTTT consensus A A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACCGGTTT MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrI:6555425-6555505 67 1.36e-05 AAACGATGAG ACCGGTTT TTGGGT chrI:7761560-7761640 25 1.36e-05 AAAACCGTAC ACCGGTTT TTTATAAAAT chrI:14323715-14323795 17 1.36e-05 GCGGGCGAAA ACCGGTTT TCTGGGAGAG chrII:5210975-5211055 18 1.36e-05 CGGTCAACTG ACCGGTTT GACGAATTTC chrV:6318082-6318162 20 1.36e-05 CTCAATACAA ACCGGTTT CATTGAATAG chrIII:10007155-10007235 58 1.36e-05 GTGAGAGAAA ACCGGTTT ATTCATGTTA chrI:8986697-8986777 51 1.36e-05 TACGTTCAGA ACCGGTTT TTTCAACCAT chrX:6318944-6319024 51 3.31e-05 CCACCACAGA AACGGTTT TTTGTGCGTA chrIV:763699-763779 34 3.31e-05 GGCATTTGAA AACGGTTT CAAGGACAGT chrII:12622299-12622379 53 3.31e-05 CCAAACACCA AACGGTTT TGCTGCAGAA chrV:16780719-16780799 29 3.31e-05 CCAACCGAAA AACGGTTT CGATCCGTCG chrIII:11255301-11255381 4 3.31e-05 AGA AACGGTTT TTATTATTTG chrX:10630231-10630311 40 5.30e-05 GTGTCAAAAT ACCAGTTT TGTCACGTGA chrI:10691958-10692038 10 5.30e-05 CCCCTCAAA ACCAGTTT CATTCTCAAA chrIII:11262287-11262367 59 5.30e-05 AATACGAAAA ACCAGTTT TACTGTGAGT chrIV:5939270-5939350 30 5.30e-05 TTATCACAAA ACCAGTTT GTGGTAATAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACCGGTTT MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:6555425-6555505 1.4e-05 66_[+4]_6 chrI:7761560-7761640 1.4e-05 24_[+4]_48 chrI:14323715-14323795 1.4e-05 16_[+4]_56 chrII:5210975-5211055 1.4e-05 17_[+4]_55 chrV:6318082-6318162 1.4e-05 19_[+4]_53 chrIII:10007155-10007235 1.4e-05 57_[+4]_15 chrI:8986697-8986777 1.4e-05 50_[+4]_22 chrX:6318944-6319024 3.3e-05 50_[+4]_22 chrIV:763699-763779 3.3e-05 33_[+4]_39 chrII:12622299-12622379 3.3e-05 52_[+4]_20 chrV:16780719-16780799 3.3e-05 28_[+4]_44 chrIII:11255301-11255381 3.3e-05 3_[+4]_69 chrX:10630231-10630311 5.3e-05 39_[+4]_33 chrI:10691958-10692038 5.3e-05 9_[+4]_63 chrIII:11262287-11262367 5.3e-05 58_[+4]_14 chrIV:5939270-5939350 5.3e-05 29_[+4]_43 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACCGGTTT MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ACCGGTTT width=8 seqs=16 chrI:6555425-6555505 ( 67) ACCGGTTT 1 chrI:7761560-7761640 ( 25) ACCGGTTT 1 chrI:14323715-14323795 ( 17) ACCGGTTT 1 chrII:5210975-5211055 ( 18) ACCGGTTT 1 chrV:6318082-6318162 ( 20) ACCGGTTT 1 chrIII:10007155-10007235 ( 58) ACCGGTTT 1 chrI:8986697-8986777 ( 51) ACCGGTTT 1 chrX:6318944-6319024 ( 51) AACGGTTT 1 chrIV:763699-763779 ( 34) AACGGTTT 1 chrII:12622299-12622379 ( 53) AACGGTTT 1 chrV:16780719-16780799 ( 29) AACGGTTT 1 chrIII:11255301-11255381 ( 4) AACGGTTT 1 chrX:10630231-10630311 ( 40) ACCAGTTT 1 chrI:10691958-10692038 ( 10) ACCAGTTT 1 chrIII:11262287-11262367 ( 59) ACCAGTTT 1 chrIV:5939270-5939350 ( 30) ACCAGTTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACCGGTTT MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.1543 E= 4.0e+000 177 -1064 -1064 -1064 9 175 -1064 -1064 -1064 229 -1064 -1064 -23 -1064 191 -1064 -1064 -1064 233 -1064 -1064 -1064 -1064 172 -1064 -1064 -1064 172 -1064 -1064 -1064 172 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACCGGTTT MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 16 E= 4.0e+000 1.000000 0.000000 0.000000 0.000000 0.312500 0.687500 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.250000 0.000000 0.750000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACCGGTTT MEME-4 regular expression -------------------------------------------------------------------------------- A[CA]C[GA]GTTT -------------------------------------------------------------------------------- Time 22.68 secs. ******************************************************************************** ******************************************************************************** MOTIF GGGGCRCC MEME-5 width = 8 sites = 10 llr = 103 E-value = 2.0e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGGGCRCC MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::4:: pos.-specific C :1::9:9a probability G 79aa161: matrix T 3::::::: bits 2.3 ** * 2.1 ** * 1.9 **** ** 1.6 **** ** Relative 1.4 **** ** Entropy 1.2 ******** (14.9 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GGGGCGCC consensus T A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGCRCC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIII:564901-564981 50 2.65e-06 TTTCGTCCTT GGGGCGCC CGTGGTCTCT chrIV:5563467-5563547 15 2.65e-06 GGACATCGTC GGGGCGCC TCAAGATTGT chrIII:4456749-4456829 32 2.65e-06 AATTATGTGT GGGGCGCC ACGtcttctc chrIII:2656346-2656426 67 6.55e-06 GGTGGGGAAA GGGGCACC GAGAAG chrV:13488569-13488649 8 1.66e-05 TAAGGGT TGGGCACC GGTCAAAAAT chrX:13324516-13324596 65 1.66e-05 GGCAGAGAGA TGGGCACC ACATGTCA chrX:2588177-2588257 14 1.66e-05 TACTGGCCAG TGGGCACC AGGACTACAC chrV:12295671-12295751 64 2.17e-05 TTCATATGAC GGGGGGCC GTGTACCCC chrX:16998200-16998280 21 2.17e-05 GCATTTTTTG GGGGCGGC TGACTTGTAA chrIV:3439487-3439567 62 2.44e-05 TGGGCAATCA GCGGCGCC GATCTTCTTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGCRCC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:564901-564981 2.6e-06 49_[+5]_23 chrIV:5563467-5563547 2.6e-06 14_[+5]_58 chrIII:4456749-4456829 2.6e-06 31_[+5]_41 chrIII:2656346-2656426 6.6e-06 66_[+5]_6 chrV:13488569-13488649 1.7e-05 7_[+5]_65 chrX:13324516-13324596 1.7e-05 64_[+5]_8 chrX:2588177-2588257 1.7e-05 13_[+5]_59 chrV:12295671-12295751 2.2e-05 63_[+5]_9 chrX:16998200-16998280 2.2e-05 20_[+5]_52 chrIV:3439487-3439567 2.4e-05 61_[+5]_11 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGCRCC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGGGCRCC width=8 seqs=10 chrIII:564901-564981 ( 50) GGGGCGCC 1 chrIV:5563467-5563547 ( 15) GGGGCGCC 1 chrIII:4456749-4456829 ( 32) GGGGCGCC 1 chrIII:2656346-2656426 ( 67) GGGGCACC 1 chrV:13488569-13488649 ( 8) TGGGCACC 1 chrX:13324516-13324596 ( 65) TGGGCACC 1 chrX:2588177-2588257 ( 14) TGGGCACC 1 chrV:12295671-12295751 ( 64) GGGGGGCC 1 chrX:16998200-16998280 ( 21) GGGGCGGC 1 chrIV:3439487-3439567 ( 62) GCGGCGCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGCRCC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.7767 E= 2.0e+002 -997 -997 181 -2 -997 -103 218 -997 -997 -997 233 -997 -997 -997 233 -997 -997 214 -99 -997 45 -997 159 -997 -997 214 -99 -997 -997 229 -997 -997 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGCRCC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 10 E= 2.0e+002 0.000000 0.000000 0.700000 0.300000 0.000000 0.100000 0.900000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.900000 0.100000 0.000000 0.400000 0.000000 0.600000 0.000000 0.000000 0.900000 0.100000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGCRCC MEME-5 regular expression -------------------------------------------------------------------------------- [GT]GGGC[GA]CC -------------------------------------------------------------------------------- Time 26.18 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:13154285-13154365 5.04e-02 72_[+1(1.28e-05)] chrI:13154498-13154578 1.36e-01 15_[+1(1.28e-05)]_31_[+1(1.28e-05)]_\ 18 chrV:11087680-11087760 3.99e-01 80 chrX:15264307-15264387 1.53e-02 80 chrX:10350278-10350358 4.57e-01 80 chrIII:10316848-10316928 4.43e-02 69_[+1(1.28e-05)]_3 chrIV:1155386-1155466 3.15e-03 16_[+1(4.08e-05)]_56 chrII:4202779-4202859 1.26e-01 5_[+1(7.94e-05)]_9_[+1(1.28e-05)]_\ 15_[+1(7.94e-05)]_9_[+1(1.28e-05)]_10 chrIV:3439487-3439567 4.37e-03 32_[+5(6.84e-05)]_21_[+5(2.44e-05)]_\ 11 chrIV:7824765-7824845 1.31e-01 5_[+3(5.16e-05)]_67 chrX:16998200-16998280 4.05e-03 20_[+5(2.17e-05)]_52 chrV:8455127-8455207 6.26e-01 80 chrX:15260382-15260462 1.21e-01 80 chrIII:9908923-9909003 1.59e-01 80 chrIII:7645247-7645327 3.40e-01 80 chrII:2994744-2994824 7.90e-01 80 chrX:12008113-12008193 5.68e-01 80 chrV:7686362-7686442 3.39e-01 80 chrX:12511548-12511628 3.06e-02 80 chrV:12295671-12295751 5.72e-02 63_[+5(2.17e-05)]_9 chrX:13120077-13120157 3.79e-01 80 chrX:2588177-2588257 1.30e-03 13_[+5(1.66e-05)]_59 chrX:16266123-16266203 4.61e-01 80 chrX:4553590-4553670 5.38e-03 28_[+5(7.74e-05)]_6_[+2(1.16e-05)]_\ 30 chrII:4918795-4918875 3.43e-01 80 chrII:12264116-12264196 3.60e-01 80 chrX:4809871-4809951 2.27e-01 80 chrI:14155283-14155363 3.37e-03 67_[+2(1.16e-05)]_5 chrX:17421853-17421933 4.12e-01 80 chrI:12717189-12717269 2.69e-02 13_[+1(1.28e-05)]_15_[+1(7.94e-05)]_\ 9_[+1(1.28e-05)]_19 chrV:6319530-6319610 8.75e-01 80 chrX:2075227-2075307 4.95e-02 80 chrV:9147353-9147433 3.06e-01 80 chrIV:6427401-6427481 8.04e-01 80 chrII:8259794-8259874 7.78e-02 80 chrV:9078527-9078607 7.69e-01 80 chrX:3155263-3155343 2.93e-01 80 chrIV:8027628-8027708 9.14e-01 80 chrIII:11255301-11255381 7.86e-02 3_[+4(3.31e-05)]_69 chrII:7807001-7807081 5.61e-01 80 chrI:1272527-1272607 3.90e-02 80 chrIII:2651686-2651766 9.69e-01 80 chrV:3985237-3985317 3.88e-01 80 chrX:6275400-6275480 1.75e-01 80 chrIII:4280410-4280490 4.11e-01 80 chrI:9334606-9334686 9.00e-01 80 chrV:19429773-19429853 6.34e-01 80 chrII:10525240-10525320 3.04e-03 72_[+2(4.04e-05)] chrX:17426834-17426914 1.18e-01 80 chrI:8986697-8986777 1.24e-02 50_[+4(1.36e-05)]_22 chrV:16779117-16779197 4.37e-01 80 chrIII:12009918-12009998 9.75e-01 80 chrX:4893828-4893908 4.82e-02 66_[+3(2.20e-05)]_6 chrIV:3441031-3441111 6.57e-01 80 chrX:13006589-13006669 3.14e-01 80 chrII:6610443-6610523 6.30e-01 80 chrII:12982131-12982211 6.29e-01 80 chrII:4761168-4761248 1.13e-01 80 chrX:14500468-14500548 2.88e-01 80 chrV:16780719-16780799 8.41e-02 28_[+4(3.31e-05)]_44 chrIV:16398034-16398114 7.22e-02 80 chrII:5246938-5247018 9.68e-01 80 chrX:1192656-1192736 2.56e-01 80 chrX:13736795-13736875 3.86e-01 80 chrIV:9615663-9615743 3.50e-01 80 chrII:6821360-6821440 9.31e-01 80 chrII:5768435-5768515 5.26e-01 80 chrX:4550422-4550502 9.20e-01 80 chrV:14506882-14506962 9.31e-01 80 chrX:2709400-2709480 2.30e-02 80 chrII:4202979-4203059 9.15e-02 5_[+1(7.94e-05)]_9_[+1(1.28e-05)]_\ 15_[+1(7.94e-05)]_27 chrII:9493421-9493501 8.55e-02 80 chrII:9064555-9064635 4.04e-01 80 chrV:6254115-6254195 3.01e-03 64_[+1(7.94e-05)]_8 chrIV:13080309-13080389 9.91e-01 80 chrIII:401052-401132 8.53e-01 80 chrIV:14675929-14676009 4.72e-01 80 chrIII:7297235-7297315 3.83e-01 80 chrIII:12551469-12551549 3.46e-01 80 chrIV:1911445-1911525 1.14e-01 69_[+2(1.16e-05)]_3 chrIV:4024758-4024838 7.41e-02 80 chrV:5693774-5693854 4.75e-01 80 chrV:13358992-13359072 4.69e-01 80 chrI:6340130-6340210 7.36e-02 3_[+3(2.20e-05)]_69 chrX:15327354-15327434 8.27e-01 80 chrIII:3809176-3809256 1.34e-01 38_[+2(2.86e-05)]_34 chrV:20693004-20693084 4.07e-01 80 chrX:5810858-5810938 2.30e-02 49_[+2(2.86e-05)]_23 chrIV:15617802-15617882 4.19e-02 80 chrV:13200744-13200824 7.18e-01 80 chrII:12622299-12622379 8.94e-02 52_[+4(3.31e-05)]_20 chrX:16263461-16263541 8.75e-01 80 chrII:7792688-7792768 1.00e-01 80 chrV:9066078-9066158 3.11e-01 80 chrI:10751530-10751610 3.00e-01 80 chrX:13324516-13324596 1.81e-04 56_[+2(4.04e-05)]_[+5(1.66e-05)]_8 chrX:4569432-4569512 6.85e-02 18_[+1(4.08e-05)]_54 chrV:6505593-6505673 1.35e-01 80 chrV:13376017-13376097 1.41e-01 58_[+2(1.16e-05)]_14 chrV:15708147-15708227 6.06e-01 80 chrII:7090323-7090403 2.23e-02 23_[+2(2.86e-05)]_49 chrX:5659812-5659892 9.39e-02 53_[+3(6.16e-05)]_19 chrIII:10290708-10290788 4.85e-01 80 chrX:4524965-4525045 4.01e-01 80 chrX:2178081-2178161 1.18e-01 80 chrV:11616097-11616177 4.38e-01 80 chrIII:12847792-12847872 3.61e-02 80 chrV:8534049-8534129 4.54e-01 80 chrX:17422734-17422814 2.81e-01 80 chrIV:10972018-10972098 4.24e-01 80 chrV:11196736-11196816 5.94e-01 80 chrI:11784575-11784655 7.44e-01 80 chrIII:9666411-9666491 1.45e-01 80 chrIII:4456749-4456829 2.22e-04 31_[+5(2.65e-06)]_6_[+3(6.16e-05)]_\ 8_[+3(3.68e-05)]_[+3(3.68e-05)]_3 chrV:19666492-19666572 1.25e-02 21_[+3(9.44e-05)]_51 chrII:10294402-10294482 3.87e-01 80 chrX:9248163-9248243 3.45e-01 80 chrII:11020842-11020922 4.44e-02 80 chrX:17424433-17424513 4.90e-01 80 chrIV:9536281-9536361 7.12e-01 80 chrX:8882358-8882438 1.11e-02 27_[+3(3.68e-05)]_[+3(3.68e-05)]_\ [+3(3.68e-05)]_[+3(3.68e-05)]_[+3(3.68e-05)]_[+3(3.68e-05)]_5 chrIV:5561546-5561626 1.66e-01 1_[+3(3.68e-05)]_71 chrIV:5939270-5939350 1.46e-02 29_[+4(5.30e-05)]_43 chrIII:10007155-10007235 2.03e-03 49_[+2(9.42e-05)]_[+4(1.36e-05)]_15 chrX:10170707-10170787 1.17e-01 80 chrII:11852382-11852462 2.09e-01 62_[+2(4.04e-05)]_10 chrIII:6132235-6132315 3.20e-01 80 chrV:6318082-6318162 9.36e-02 19_[+4(1.36e-05)]_53 chrIV:763699-763779 3.94e-04 33_[+4(3.31e-05)]_10_[+3(3.68e-05)]_\ 21 chrIV:8036630-8036710 7.47e-03 34_[+3(3.68e-05)]_38 chrX:6277390-6277470 8.35e-01 80 chrX:15073021-15073101 1.09e-01 80 chrIV:3438194-3438274 6.56e-01 80 chrV:8994425-8994505 1.86e-01 80 chrIII:8577669-8577749 6.04e-01 80 chrI:5826774-5826854 5.10e-01 80 chrV:12299504-12299584 1.72e-01 49_[+3(9.44e-05)]_23 chrIV:8824459-8824539 1.53e-02 80 chrII:11017023-11017103 6.86e-01 80 chrV:801835-801915 4.07e-01 80 chrV:4192822-4192902 3.04e-01 80 chrX:2893132-2893212 6.84e-01 80 chrX:17684888-17684968 9.67e-01 80 chrX:6279682-6279762 1.12e-01 17_[+3(5.16e-05)]_55 chrX:13008250-13008330 3.98e-01 80 chrIII:6337915-6337995 6.39e-02 [+1(1.28e-05)]_32_[+1(1.28e-05)]_32 chrIII:11262287-11262367 6.76e-03 58_[+4(5.30e-05)]_14 chrI:8986031-8986111 2.48e-01 80 chrX:5079446-5079526 1.19e-01 80 chrI:3752235-3752315 4.82e-03 34_[+3(2.20e-05)]_38 chrII:7272684-7272764 3.08e-01 80 chrX:12671777-12671857 3.68e-01 80 chrIII:2656346-2656426 3.69e-04 37_[+3(2.20e-05)]_21_[+5(6.55e-06)]_\ 6 chrX:16555894-16555974 3.13e-02 80 chrX:4927062-4927142 4.13e-01 80 chrI:5400371-5400451 8.35e-01 80 chrX:9786092-9786172 3.79e-01 80 chrIV:13014030-13014110 5.05e-01 80 chrV:13490056-13490136 4.47e-01 80 chrV:10387539-10387619 1.78e-02 61_[+1(5.39e-05)]_11 chrI:6885328-6885408 2.25e-02 41_[+2(6.53e-05)]_4_[+2(4.04e-05)]_\ 19 chrIV:15398782-15398862 5.26e-02 1_[+3(3.68e-05)]_71 chrV:13259651-13259731 3.86e-02 80 chrIII:7301828-7301908 1.98e-02 80 chrX:7743383-7743463 4.59e-01 80 chrX:5803634-5803714 6.50e-03 80 chrX:14786893-14786973 4.08e-01 80 chrII:7791768-7791848 3.69e-01 80 chrV:8652318-8652398 2.18e-01 80 chrV:13333559-13333639 8.60e-01 80 chrV:3979961-3980041 2.89e-03 69_[+2(4.83e-05)]_3 chrIV:1389204-1389284 6.96e-01 80 chrV:13488569-13488649 2.05e-03 7_[+5(1.66e-05)]_65 chrII:9987376-9987456 1.03e-01 80 chrI:10691958-10692038 1.85e-02 9_[+4(5.30e-05)]_63 chrI:7883821-7883901 7.10e-03 33_[+1(5.39e-05)]_39 chrIV:9090761-9090841 1.48e-01 80 chrI:10403872-10403952 4.81e-02 55_[+2(1.16e-05)]_4_[+2(1.16e-05)]_\ 5 chrV:9165424-9165504 7.71e-02 80 chrX:10302071-10302151 2.87e-02 64_[+1(5.39e-05)]_8 chrV:6323139-6323219 3.39e-01 80 chrV:14725528-14725608 1.01e-02 43_[+3(3.68e-05)]_29 chrII:4759945-4760025 3.35e-01 80 chrX:9547415-9547495 1.58e-01 80 chrI:4168002-4168082 6.93e-02 34_[+1(1.28e-05)]_38 chrII:1188289-1188369 5.95e-02 1_[+3(5.16e-05)]_6_[+3(2.20e-05)]_\ 30_[+3(6.16e-05)]_19 chrIV:5586434-5586514 1.41e-02 51_[+2(1.16e-05)]_21 chrII:2977844-2977924 1.76e-01 80 chrX:10630231-10630311 1.05e-01 39_[+4(5.30e-05)]_33 chrII:10519160-10519240 7.98e-01 80 chrII:8441002-8441082 4.91e-01 80 chrX:3932811-3932891 7.71e-01 80 chrX:9848783-9848863 3.58e-02 80 chrX:4877075-4877155 2.16e-01 80 chrX:6323294-6323374 7.08e-01 80 chrX:12518092-12518172 5.43e-02 3_[+1(6.71e-05)]_69 chrV:13788068-13788148 1.03e-01 80 chrX:10769524-10769604 2.05e-01 80 chrIV:9618176-9618256 1.81e-01 80 chrV:12554304-12554384 4.04e-03 [+3(3.68e-05)]_72 chrII:11838476-11838556 2.41e-01 80 chrV:6830920-6831000 2.55e-01 80 chrII:12991714-12991794 1.57e-01 21_[+2(4.04e-05)]_51 chrII:5210975-5211055 9.45e-03 17_[+4(1.36e-05)]_55 chrII:7802105-7802185 9.81e-01 80 chrV:10460836-10460916 7.46e-01 80 chrIV:13075804-13075884 3.63e-01 80 chrV:9633414-9633494 1.80e-02 80 chrV:8662355-8662435 4.12e-01 80 chrI:7216733-7216813 7.33e-03 80 chrX:16784179-16784259 7.19e-03 80 chrV:9654256-9654336 2.38e-01 80 chrII:7342095-7342175 5.33e-01 80 chrX:9549081-9549161 5.86e-02 80 chrX:8010770-8010850 2.71e-01 80 chrII:13680074-13680154 2.78e-01 80 chrV:11531201-11531281 5.70e-01 80 chrV:15959592-15959672 5.56e-02 42_[+2(9.42e-05)]_30 chrII:11836711-11836791 5.97e-01 80 chrIV:12045047-12045127 5.96e-01 80 chrX:5603520-5603600 6.09e-01 80 chrX:6318944-6319024 4.71e-02 50_[+4(3.31e-05)]_22 chrV:12557189-12557269 9.08e-01 80 chrI:14323715-14323795 1.13e-02 16_[+4(1.36e-05)]_56 chrI:7761560-7761640 4.44e-03 24_[+4(1.36e-05)]_48 chrII:9561050-9561130 4.91e-01 80 chrIII:6364511-6364591 5.54e-01 80 chrV:13790734-13790814 8.63e-01 80 chrX:14508123-14508203 5.06e-01 80 chrX:9638958-9639038 1.62e-01 80 chrX:3837866-3837946 1.42e-01 80 chrIII:13710845-13710925 7.01e-01 80 chrIV:5563467-5563547 2.81e-06 14_[+5(2.65e-06)]_48_[+2(1.16e-05)]_\ 2 chrI:6555425-6555505 5.53e-02 66_[+4(1.36e-05)]_6 chrX:4551101-4551181 1.65e-01 33_[+5(8.52e-05)]_39 chrIV:14482271-14482351 6.72e-02 6_[+3(2.20e-05)]_66 chrII:11138258-11138338 4.84e-02 14_[+1(1.28e-05)]_8_[+1(1.28e-05)]_\ 16_[+1(4.08e-05)]_9_[+1(1.28e-05)]_1 chrIII:564901-564981 2.24e-04 49_[+5(2.65e-06)]_23 chrIV:1716069-1716149 3.64e-01 80 chrV:6503359-6503439 1.70e-01 16_[+3(9.44e-05)]_56 chrII:9032155-9032235 1.65e-02 80 chrV:13374651-13374731 2.57e-03 41_[+3(3.68e-05)]_[+3(3.68e-05)]_2_\ [+3(3.68e-05)]_[+3(6.16e-05)]_5 chrII:6619199-6619279 4.04e-02 80 chrX:12176988-12177068 3.88e-02 9_[+1(1.28e-05)]_63 chrV:11533113-11533193 6.64e-02 50_[+2(6.53e-05)]_22 chrV:5410822-5410902 9.02e-01 80 chrX:8584953-8585033 7.45e-02 3_[+1(5.39e-05)]_69 chrV:8653497-8653577 7.02e-01 80 chrX:13315281-13315361 1.78e-01 80 chrI:13650886-13650966 1.52e-02 80 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n07.farnam.hpc.yale.internal ********************************************************************************