******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/worm/fasta/RankLinear2.0_40/nhr-80.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrII:11438568-11438648 1.0000 80 chrIV:11259723-11259803 1.0000 80 chrX:3306749-3306829 1.0000 80 chrI:4332320-4332400 1.0000 80 chrIII:12138385-12138465 1.0000 80 chrV:6210113-6210193 1.0000 80 chrIV:673476-673556 1.0000 80 chrI:7913423-7913503 1.0000 80 chrII:2320266-2320346 1.0000 80 chrII:5749859-5749939 1.0000 80 chrIV:3258693-3258773 1.0000 80 chrII:13814068-13814148 1.0000 80 chrX:16337597-16337677 1.0000 80 chrIV:3819555-3819635 1.0000 80 chrX:4928317-4928397 1.0000 80 chrX:10529137-10529217 1.0000 80 chrIII:3621333-3621413 1.0000 80 chrV:6823586-6823666 1.0000 80 chrI:7355900-7355980 1.0000 80 chrIV:12700364-12700444 1.0000 80 chrX:5013963-5014043 1.0000 80 chrV:1464697-1464777 1.0000 80 chrII:5806687-5806767 1.0000 80 chrV:6676250-6676330 1.0000 80 chrI:2962426-2962506 1.0000 80 chrX:12243037-12243117 1.0000 80 chrIII:5015248-5015328 1.0000 80 chrII:10403133-10403213 1.0000 80 chrII:76842-76922 1.0000 80 chrIII:11193377-11193457 1.0000 80 chrX:4749255-4749335 1.0000 80 chrX:2018414-2018494 1.0000 80 chrIII:3764184-3764264 1.0000 80 chrII:11427462-11427542 1.0000 80 chrV:6812034-6812114 1.0000 80 chrX:14003667-14003747 1.0000 80 chrI:2791540-2791620 1.0000 80 chrIV:4394112-4394192 1.0000 80 chrX:12907657-12907737 1.0000 80 chrX:816118-816198 1.0000 80 chrII:12577893-12577973 1.0000 80 chrIII:11268688-11268768 1.0000 80 chrV:20909937-20910017 1.0000 80 chrV:11756002-11756082 1.0000 80 chrIII:11195700-11195780 1.0000 80 chrIV:11257640-11257720 1.0000 80 chrX:3548859-3548939 1.0000 80 chrX:637783-637863 1.0000 80 chrX:10957400-10957480 1.0000 80 chrII:9116539-9116619 1.0000 80 chrIV:523763-523843 1.0000 80 chrV:19755407-19755487 1.0000 80 chrV:9526662-9526742 1.0000 80 chrI:5570638-5570718 1.0000 80 chrX:9097020-9097100 1.0000 80 chrX:17185840-17185920 1.0000 80 chrII:10918460-10918540 1.0000 80 chrX:14770536-14770616 1.0000 80 chrX:7171048-7171128 1.0000 80 chrV:6301204-6301284 1.0000 80 chrII:7237094-7237174 1.0000 80 chrII:7639206-7639286 1.0000 80 chrII:10627259-10627339 1.0000 80 chrII:8991754-8991834 1.0000 80 chrIII:3281998-3282078 1.0000 80 chrIV:12869544-12869624 1.0000 80 chrIII:9592289-9592369 1.0000 80 chrV:6292501-6292581 1.0000 80 chrIV:4562905-4562985 1.0000 80 chrV:9218819-9218899 1.0000 80 chrII:14965051-14965131 1.0000 80 chrX:2543491-2543571 1.0000 80 chrIII:11241976-11242056 1.0000 80 chrI:39009-39089 1.0000 80 chrI:3249167-3249247 1.0000 80 chrII:7694038-7694118 1.0000 80 chrX:11556472-11556552 1.0000 80 chrV:16605624-16605704 1.0000 80 chrV:4770579-4770659 1.0000 80 chrIII:7030212-7030292 1.0000 80 chrII:4967831-4967911 1.0000 80 chrX:670745-670825 1.0000 80 chrII:6178126-6178206 1.0000 80 chrX:1117373-1117453 1.0000 80 chrV:11007829-11007909 1.0000 80 chrX:2906480-2906560 1.0000 80 chrX:5669862-5669942 1.0000 80 chrX:1541240-1541320 1.0000 80 chrI:6203865-6203945 1.0000 80 chrV:5647557-5647637 1.0000 80 chrIII:13528666-13528746 1.0000 80 chrIV:7497371-7497451 1.0000 80 chrV:6881872-6881952 1.0000 80 chrIV:10439078-10439158 1.0000 80 chrII:10221779-10221859 1.0000 80 chrIV:10420543-10420623 1.0000 80 chrIV:626338-626418 1.0000 80 chrII:9797828-9797908 1.0000 80 chrIII:9472607-9472687 1.0000 80 chrIII:1222224-1222304 1.0000 80 chrII:9166180-9166260 1.0000 80 chrIV:9160045-9160125 1.0000 80 chrI:10586819-10586899 1.0000 80 chrII:6377711-6377791 1.0000 80 chrV:12298349-12298429 1.0000 80 chrX:4672001-4672081 1.0000 80 chrII:9325716-9325796 1.0000 80 chrI:3533841-3533921 1.0000 80 chrX:10748306-10748386 1.0000 80 chrV:13421870-13421950 1.0000 80 chrV:13577639-13577719 1.0000 80 chrX:5346424-5346504 1.0000 80 chrII:13715912-13715992 1.0000 80 chrX:9568741-9568821 1.0000 80 chrIII:5546888-5546968 1.0000 80 chrIV:7326925-7327005 1.0000 80 chrX:7559081-7559161 1.0000 80 chrIV:4605729-4605809 1.0000 80 chrIV:12835495-12835575 1.0000 80 chrII:4194281-4194361 1.0000 80 chrX:6924608-6924688 1.0000 80 chrIII:956135-956215 1.0000 80 chrIV:4285172-4285252 1.0000 80 chrII:1386633-1386713 1.0000 80 chrX:11925355-11925435 1.0000 80 chrX:11499930-11500010 1.0000 80 chrII:10861011-10861091 1.0000 80 chrV:19405591-19405671 1.0000 80 chrX:11252100-11252180 1.0000 80 chrX:17195220-17195300 1.0000 80 chrX:6463194-6463274 1.0000 80 chrX:3611366-3611446 1.0000 80 chrV:6476219-6476299 1.0000 80 chrX:15089293-15089373 1.0000 80 chrII:10094357-10094437 1.0000 80 chrV:10404860-10404940 1.0000 80 chrIV:9537663-9537743 1.0000 80 chrV:12933793-12933873 1.0000 80 chrI:5885368-5885448 1.0000 80 chrI:8876170-8876250 1.0000 80 chrII:8867021-8867101 1.0000 80 chrIV:6275969-6276049 1.0000 80 chrV:5510151-5510231 1.0000 80 chrIV:5614778-5614858 1.0000 80 chrIII:9786950-9787030 1.0000 80 chrIV:7237937-7238017 1.0000 80 chrX:15944359-15944439 1.0000 80 chrIV:4557745-4557825 1.0000 80 chrII:4715829-4715909 1.0000 80 chrIV:189242-189322 1.0000 80 chrV:2765212-2765292 1.0000 80 chrII:6244320-6244400 1.0000 80 chrV:11859608-11859688 1.0000 80 chrV:8460477-8460557 1.0000 80 chrIV:10467509-10467589 1.0000 80 chrX:11509695-11509775 1.0000 80 chrX:16487424-16487504 1.0000 80 chrX:14969766-14969846 1.0000 80 chrII:4469231-4469311 1.0000 80 chrII:5751513-5751593 1.0000 80 chrIII:5916109-5916189 1.0000 80 chrI:12505969-12506049 1.0000 80 chrI:1017468-1017548 1.0000 80 chrX:2411113-2411193 1.0000 80 chrX:4862221-4862301 1.0000 80 chrX:11264889-11264969 1.0000 80 chrIV:4148019-4148099 1.0000 80 chrIII:4906537-4906617 1.0000 80 chrX:10527552-10527632 1.0000 80 chrX:7812047-7812127 1.0000 80 chrX:7296452-7296532 1.0000 80 chrX:13947384-13947464 1.0000 80 chrI:10382037-10382117 1.0000 80 chrX:7902011-7902091 1.0000 80 chrV:13578812-13578892 1.0000 80 chrV:449852-449932 1.0000 80 chrI:12504962-12505042 1.0000 80 chrIII:4468530-4468610 1.0000 80 chrIII:4918448-4918528 1.0000 80 chrX:5400666-5400746 1.0000 80 chrX:14769186-14769266 1.0000 80 chrX:4971107-4971187 1.0000 80 chrV:12245492-12245572 1.0000 80 chrI:4480979-4481059 1.0000 80 chrIV:6048639-6048719 1.0000 80 chrII:1871006-1871086 1.0000 80 chrIV:8174935-8175015 1.0000 80 chrX:9266704-9266784 1.0000 80 chrII:10653739-10653819 1.0000 80 chrI:11997994-11998074 1.0000 80 chrIV:12382998-12383078 1.0000 80 chrII:12816784-12816864 1.0000 80 chrIV:187508-187588 1.0000 80 chrI:4314485-4314565 1.0000 80 chrIII:11046726-11046806 1.0000 80 chrIV:10388436-10388516 1.0000 80 chrX:3564080-3564160 1.0000 80 chrIII:891182-891262 1.0000 80 chrX:13334006-13334086 1.0000 80 chrI:14051112-14051192 1.0000 80 chrIV:1379093-1379173 1.0000 80 chrX:3556062-3556142 1.0000 80 chrII:4598967-4599047 1.0000 80 chrV:8427245-8427325 1.0000 80 chrV:12741844-12741924 1.0000 80 chrX:17197979-17198059 1.0000 80 chrIV:8475418-8475498 1.0000 80 chrIV:8030256-8030336 1.0000 80 chrX:17534262-17534342 1.0000 80 chrII:6469505-6469585 1.0000 80 chrV:331416-331496 1.0000 80 chrIII:7315289-7315369 1.0000 80 chrII:1159830-1159910 1.0000 80 chrIV:17342360-17342440 1.0000 80 chrX:5813277-5813357 1.0000 80 chrI:5290811-5290891 1.0000 80 chrX:6169421-6169501 1.0000 80 chrIV:10970484-10970564 1.0000 80 chrV:7888214-7888294 1.0000 80 chrII:8032798-8032878 1.0000 80 chrV:6409006-6409086 1.0000 80 chrII:9093047-9093127 1.0000 80 chrX:11105362-11105442 1.0000 80 chrX:13421221-13421301 1.0000 80 chrII:2323271-2323351 1.0000 80 chrV:9679318-9679398 1.0000 80 chrV:10484129-10484209 1.0000 80 chrX:10340195-10340275 1.0000 80 chrII:12904315-12904395 1.0000 80 chrX:9850367-9850447 1.0000 80 chrV:7075823-7075903 1.0000 80 chrII:10859538-10859618 1.0000 80 chrX:7727766-7727846 1.0000 80 chrX:7998160-7998240 1.0000 80 chrIII:7479099-7479179 1.0000 80 chrX:13342030-13342110 1.0000 80 chrI:6389778-6389858 1.0000 80 chrIII:12307650-12307730 1.0000 80 chrIII:6693423-6693503 1.0000 80 chrX:8074721-8074801 1.0000 80 chrIV:12910015-12910095 1.0000 80 chrIV:15849848-15849928 1.0000 80 chrI:10833512-10833592 1.0000 80 chrIII:5964418-5964498 1.0000 80 chrIV:552063-552143 1.0000 80 chrV:4737883-4737963 1.0000 80 chrV:12021104-12021184 1.0000 80 chrX:4567280-4567360 1.0000 80 chrX:13257684-13257764 1.0000 80 chrIV:6017852-6017932 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/worm/inference_raw/MEME/RankLinear2.0_40_nhr-80/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/worm/fasta/RankLinear2.0_40/nhr-80.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.304 C 0.198 G 0.201 T 0.297 Background letter frequencies (from file dataset with add-one prior applied): A 0.304 C 0.198 G 0.201 T 0.297 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF TCTTATCA MEME-1 width = 8 sites = 104 llr = 775 E-value = 2.6e-049 ******************************************************************************** -------------------------------------------------------------------------------- Motif TCTTATCA MEME-1 Description -------------------------------------------------------------------------------- Simplified A 1:::9::9 pos.-specific C 26::::a: probability G 22:::::1 matrix T 53aa1a:: bits 2.3 * 2.1 * 1.9 * 1.6 ** ** Relative 1.4 ** ** Entropy 1.2 ****** (10.7 bits) 0.9 ****** 0.7 ******* 0.5 ******* 0.2 ******** 0.0 -------- Multilevel TCTTATCA consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTTATCA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIV:6017852-6017932 2 2.82e-05 A TCTTATCA GCAAACCAGT chrV:4737883-4737963 26 2.82e-05 GCCTTGTATT TCTTATCA GCATGTAGGA chrX:13342030-13342110 71 2.82e-05 TGGACTCAAC TCTTATCA TT chrX:9850367-9850447 30 2.82e-05 ATTTGACTCC TCTTATCA CCGAAACTCA chrII:2323271-2323351 70 2.82e-05 AAGGCTTAAT TCTTATCA ACG chrIV:17342360-17342440 71 2.82e-05 CATCAAAAGT TCTTATCA AA chrX:17197979-17198059 68 2.82e-05 TTTGGCAGAA TCTTATCA AGAAA chrV:8427245-8427325 20 2.82e-05 TTCGATGACC TCTTATCA GAAGGTAGGC chrIV:6048639-6048719 38 2.82e-05 AATTTGGTGG TCTTATCA AGAATGCTGA chrIII:4906537-4906617 6 2.82e-05 AGTTT TCTTATCA GTTTGTATCA chrI:1017468-1017548 17 2.82e-05 TTCCGTGACT TCTTATCA ATTTTCAACA chrIII:5916109-5916189 39 2.82e-05 GAAATAAGTT TCTTATCA TTATCAGCAT chrX:16487424-16487504 62 2.82e-05 TGCAGAACTC TCTTATCA CATTTTCTGC chrIV:6275969-6276049 33 2.82e-05 AACTCGTAAT TCTTATCA TAATCGACCT chrV:12933793-12933873 35 2.82e-05 ATCAACTTTT TCTTATCA GTTCAAGATT chrIV:7326925-7327005 35 2.82e-05 CTTAACAACA TCTTATCA GTTTTTGGTG chrV:11007829-11007909 53 2.82e-05 TTTCCCTTTT TCTTATCA AATCATCCCA chrV:4770579-4770659 11 2.82e-05 CGCCGGTCTA TCTTATCA CTCTGACCTT chrIV:4562905-4562985 1 2.82e-05 . TCTTATCA TTTTAAGACC chrII:11438568-11438648 29 2.82e-05 TTCTTCATTG TCTTATCA GTGCTCCGCT chrX:7727766-7727846 29 4.70e-05 CAAATTAAAG CCTTATCA GTGCGCTAAA chrIV:10970484-10970564 65 4.70e-05 GTTTCGGGAT CCTTATCA CTGTACAC chrI:4314485-4314565 29 4.70e-05 GCGGTCATTC CCTTATCA TTCTAGTCCT chrV:449852-449932 13 4.70e-05 AGAACATTTT CCTTATCA CACTGAGGTT chrX:7812047-7812127 10 4.70e-05 AAAATATTT CCTTATCA ATTTGTAGAA chrI:12505969-12506049 34 4.70e-05 ATTCCATAAA CCTTATCA GTTTTTGTGC chrIII:9786950-9787030 13 4.70e-05 TTTTACTGAA CCTTATCA ATAGTATCAT chrIII:5546888-5546968 53 4.70e-05 CTCAATAATT CCTTATCA CTACTCTTTT chrV:13421870-13421950 4 4.70e-05 TTC CCTTATCA CTGTTGAACT chrX:670745-670825 36 4.70e-05 GGTAAAAATT CCTTATCA AGGTCAGCCT chrX:816118-816198 1 4.70e-05 . CCTTATCA CTTATCACGC chrIII:11193377-11193457 28 4.70e-05 TAGAACAACT CCTTATCA GTCGAGCGGA chrX:3564080-3564160 15 6.61e-05 GCCATTTAAT GCTTATCA GCGCAAATTG chrX:3611366-3611446 57 6.61e-05 AAACCGTGTC GCTTATCA ATGCGTGCCA chrIV:10420543-10420623 26 6.61e-05 CGACGTTTCT GCTTATCA AAAAGTTGAA chrII:6178126-6178206 5 6.61e-05 CACT GCTTATCA TCAAAAATTT chrV:16605624-16605704 22 6.61e-05 CAAGTTTGGT GCTTATCA AAGAAATTGT chrII:9116539-9116619 22 6.61e-05 AGTCATACTC GCTTATCA CCAAAAATGG chrX:3548859-3548939 5 6.61e-05 ATTC GCTTATCA GTTTCGTTTC chrIII:11268688-11268768 12 6.61e-05 GGAGTCGAAT GCTTATCA TTCTAGGAGG chrX:12243037-12243117 21 6.61e-05 TGCCCGAACT GCTTATCA AAAACTGTTA chrIII:12138385-12138465 44 6.61e-05 TTTCTGACTT GCTTATCA GAAAATGAGT chrIII:6693423-6693503 5 1.37e-04 ATAC TGTTATCA TTTATAAGTG chrIII:7479099-7479179 20 1.37e-04 TCTTTTATCA TTTTATCA TCACTTTATC chrI:4480979-4481059 73 1.37e-04 GCCTTAATAT TTTTATCA chrIII:4918448-4918528 1 1.37e-04 . TGTTATCA ATGGGAACAT chrIII:4468530-4468610 63 1.37e-04 CTGCCACAAT TGTTATCA TTACAGATTG chrX:10748306-10748386 20 1.37e-04 TCGAGTGTGT TGTTATCA GTTGTTAAAG chrV:5647557-5647637 35 1.37e-04 TGGCGGCACA TTTTATCA ATCACTCACT chrX:17185840-17185920 45 1.37e-04 TTTAATCAGT TGTTATCA GTGTATGTCG chrV:9526662-9526742 64 1.37e-04 CTCCCGCATT TTTTATCA CTGATAACA chrIV:11257640-11257720 27 1.37e-04 CTCGATCAAA TTTTATCA CATCAAACCC chrX:2018414-2018494 14 1.37e-04 TCCAAACCAC TTTTATCA TCAAGTCATA chrIII:5015248-5015328 30 1.37e-04 CAGAGTTTTG TGTTATCA TTCTAAACGT chrX:5013963-5014043 42 1.37e-04 ACATGAACTT TTTTATCA GTCCACCCAT chrII:13814068-13814148 50 1.37e-04 AAAGAGGTAG TTTTATCA ATTGACAGGT chrX:13947384-13947464 15 1.56e-04 TTTATATTTT TCTTATCG TAGTTAACAT chrIII:1222224-1222304 6 1.56e-04 GCTTA TCTTATCG AAAAATGACA chrI:6203865-6203945 59 1.56e-04 ATGCAACATT TCTTATCG CAGAATTCGA chrIII:3764184-3764264 39 1.56e-04 AATTCTGATT TCTTATCG CATAGTGACG chrIV:10388436-10388516 13 1.84e-04 CAGTTAAAAG ACTTATCA CCCGGAAAAG chrX:6169421-6169501 12 2.32e-04 GCAGAAGAGT CTTTATCA GTCACTACGC chrIV:1379093-1379173 49 2.32e-04 ATTTTCGACT CGTTATCA GTGATAAGCG chrII:10627259-10627339 53 2.32e-04 ACGCTTAAAA CTTTATCA AGAACGAAAT chrV:6676250-6676330 44 2.32e-04 GCAAAGCAAG CGTTATCA GCACATTTTC chrIV:552063-552143 12 2.80e-04 CAATTATGGA GTTTATCA ATCCAGATGT chrV:10484129-10484209 22 2.80e-04 TTTGTGCTCG GGTTATCA TGTCTATCAG chrV:6881872-6881952 27 2.80e-04 ATTTTTTGCT GTTTATCA GACCGTTCAT chrI:2962426-2962506 21 2.80e-04 ACATAAACAT GTTTATCA TATTTGGAAA chrII:5806687-5806767 28 2.80e-04 GGCGGTGAGA GGTTATCA GTTATCAGTT chrIV:12700364-12700444 40 2.80e-04 gagagagaga gGTTATCA CAACATTACT chrV:13578812-13578892 44 3.20e-04 CTACAACAAC TCTTTTCA ACGTGTTACC chrIV:9537663-9537743 61 3.20e-04 TTCTTTTTGT TCTTTTCA AAGTCCCGCA chrI:7355900-7355980 44 3.20e-04 TAAATAATCC TCTTTTCA CAGTTATCAT chrII:5749859-5749939 13 3.20e-04 CTTTTTTTCT TCTTTTCA CCCCCTCCCC chrX:10340195-10340275 18 3.51e-04 GACAAGTTTC TCTTCTCA CCGTGTGCGA chrIV:8475418-8475498 14 3.51e-04 TCACTATCTA TCTTCTCA CATCGTTCAA chrII:5751513-5751593 3 3.51e-04 AT TCTTCTCA AACAAAGCGC chrIV:4148019-4148099 26 3.98e-04 CTTATAACAT TTTTATCG CCTTACTTCC chrX:11509695-11509775 30 3.98e-04 GCAGAATAGT TGTTATCG CACGATAATC chrV:6476219-6476299 43 3.98e-04 CAACTCTTTG TTTTATCG AAAAAAGACG chrII:9325716-9325796 45 3.98e-04 AACTTCGATA TTTTATCG CAACTGGGGT chrIV:9160045-9160125 65 3.98e-04 AAAGTGCCAA TTTTATCG GTTTAGTC chrIV:12910015-12910095 21 4.70e-04 TGTGAAATCA AGTTATCA GTTCGACGAG chrII:1159830-1159910 47 4.70e-04 ATGATTGTGT AGTTATCA AATTTCGCAA chrII:10653739-10653819 73 4.70e-04 ATTCTCATAA ATTTATCA chrIII:9472607-9472687 55 4.70e-04 ATTTTTGCCA ATTTATCA TTTATGTGTC chrII:14965051-14965131 5 4.70e-04 ATAC ATTTATCA CCATATAGTT chrX:4749255-4749335 10 4.70e-04 GACAAATAA AGTTATCA GCAAGTACGG chrV:6823586-6823666 12 4.70e-04 GTTTTCGTAT ATTTATCA AACTGTTGAA chrX:13257684-13257764 16 5.26e-04 CTATCTTTTG ACTTATCG TTTTTTTGAT chrIV:189242-189322 67 5.26e-04 TTTTTTTGCA ACTTATCG GAGAAG chrI:2791540-2791620 15 5.26e-04 TTGATAAGAA GCTTTTCA ACCACCCGCC chrX:6924608-6924688 71 6.51e-04 TAAATATTCT CTTTATCG GC chrII:4194281-4194361 49 6.51e-04 AAGCGAAACT TTTTTTCA CAATAAAATC chrII:10221779-10221859 44 6.51e-04 TTCCACACAC CGTTATCG AATTGTGCTC chrX:3306749-3306829 22 6.51e-04 GATAAGAAGT TTTTTTCA GAACTATAAT chrII:12816784-12816864 72 7.91e-04 CAAACTATTT TATTATCA C chrX:9266704-9266784 57 7.91e-04 TAAGCAGTCA TTTTCTCA AACGCAGACA chrX:7296452-7296532 31 7.91e-04 AGCATTTCCA TTTTCTCA ATGAACCCAT chrV:6812034-6812114 13 7.91e-04 CGTTTTCGTA TATTATCA AACTTTTGAA chrII:1871006-1871086 35 8.19e-04 CCCATCATTC ACTTTTCA TTCGACTTGG chrX:16337597-16337677 15 8.19e-04 CATTACGTAA ACTTTTCA AGGCGAGCCT chrI:5570638-5570718 29 1.02e-03 TGATTTTGTT TCTTATCT CTGAAAAATT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTTATCA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:6017852-6017932 2.8e-05 1_[+1]_71 chrV:4737883-4737963 2.8e-05 25_[+1]_47 chrX:13342030-13342110 2.8e-05 70_[+1]_2 chrX:9850367-9850447 2.8e-05 29_[+1]_43 chrII:2323271-2323351 2.8e-05 69_[+1]_3 chrIV:17342360-17342440 2.8e-05 70_[+1]_2 chrX:17197979-17198059 2.8e-05 67_[+1]_5 chrV:8427245-8427325 2.8e-05 19_[+1]_53 chrIV:6048639-6048719 2.8e-05 37_[+1]_35 chrIII:4906537-4906617 2.8e-05 5_[+1]_67 chrI:1017468-1017548 2.8e-05 16_[+1]_56 chrIII:5916109-5916189 2.8e-05 38_[+1]_34 chrX:16487424-16487504 2.8e-05 61_[+1]_11 chrIV:6275969-6276049 2.8e-05 32_[+1]_40 chrV:12933793-12933873 2.8e-05 34_[+1]_38 chrIV:7326925-7327005 2.8e-05 34_[+1]_38 chrV:11007829-11007909 2.8e-05 52_[+1]_20 chrV:4770579-4770659 2.8e-05 10_[+1]_62 chrIV:4562905-4562985 2.8e-05 [+1]_72 chrII:11438568-11438648 2.8e-05 28_[+1]_44 chrX:7727766-7727846 4.7e-05 28_[+1]_44 chrIV:10970484-10970564 4.7e-05 64_[+1]_8 chrI:4314485-4314565 4.7e-05 28_[+1]_44 chrV:449852-449932 4.7e-05 12_[+1]_60 chrX:7812047-7812127 4.7e-05 9_[+1]_63 chrI:12505969-12506049 4.7e-05 33_[+1]_39 chrIII:9786950-9787030 4.7e-05 12_[+1]_60 chrIII:5546888-5546968 4.7e-05 52_[+1]_20 chrV:13421870-13421950 4.7e-05 3_[+1]_69 chrX:670745-670825 4.7e-05 35_[+1]_37 chrX:816118-816198 4.7e-05 [+1]_72 chrIII:11193377-11193457 4.7e-05 27_[+1]_45 chrX:3564080-3564160 6.6e-05 14_[+1]_58 chrX:3611366-3611446 6.6e-05 56_[+1]_16 chrIV:10420543-10420623 6.6e-05 25_[+1]_47 chrII:6178126-6178206 6.6e-05 4_[+1]_68 chrV:16605624-16605704 6.6e-05 21_[+1]_51 chrII:9116539-9116619 6.6e-05 21_[+1]_51 chrX:3548859-3548939 6.6e-05 4_[+1]_68 chrIII:11268688-11268768 6.6e-05 11_[+1]_61 chrX:12243037-12243117 6.6e-05 20_[+1]_52 chrIII:12138385-12138465 6.6e-05 43_[+1]_29 chrIII:6693423-6693503 0.00014 4_[+1]_68 chrIII:7479099-7479179 0.00014 19_[+1]_53 chrI:4480979-4481059 0.00014 72_[+1] chrIII:4918448-4918528 0.00014 [+1]_72 chrIII:4468530-4468610 0.00014 62_[+1]_10 chrX:10748306-10748386 0.00014 19_[+1]_53 chrV:5647557-5647637 0.00014 34_[+1]_38 chrX:17185840-17185920 0.00014 44_[+1]_28 chrV:9526662-9526742 0.00014 63_[+1]_9 chrIV:11257640-11257720 0.00014 26_[+1]_46 chrX:2018414-2018494 0.00014 13_[+1]_59 chrIII:5015248-5015328 0.00014 29_[+1]_43 chrX:5013963-5014043 0.00014 41_[+1]_31 chrII:13814068-13814148 0.00014 49_[+1]_23 chrX:13947384-13947464 0.00016 14_[+1]_58 chrIII:1222224-1222304 0.00016 5_[+1]_67 chrI:6203865-6203945 0.00016 58_[+1]_14 chrIII:3764184-3764264 0.00016 38_[+1]_34 chrIV:10388436-10388516 0.00018 12_[+1]_60 chrX:6169421-6169501 0.00023 11_[+1]_61 chrIV:1379093-1379173 0.00023 48_[+1]_24 chrII:10627259-10627339 0.00023 52_[+1]_20 chrV:6676250-6676330 0.00023 43_[+1]_29 chrIV:552063-552143 0.00028 11_[+1]_61 chrV:10484129-10484209 0.00028 21_[+1]_51 chrV:6881872-6881952 0.00028 26_[+1]_46 chrI:2962426-2962506 0.00028 20_[+1]_52 chrII:5806687-5806767 0.00028 27_[+1]_45 chrIV:12700364-12700444 0.00028 39_[+1]_33 chrV:13578812-13578892 0.00032 43_[+1]_29 chrIV:9537663-9537743 0.00032 60_[+1]_12 chrI:7355900-7355980 0.00032 43_[+1]_29 chrII:5749859-5749939 0.00032 12_[+1]_60 chrX:10340195-10340275 0.00035 17_[+1]_55 chrIV:8475418-8475498 0.00035 13_[+1]_59 chrII:5751513-5751593 0.00035 2_[+1]_70 chrIV:4148019-4148099 0.0004 25_[+1]_47 chrX:11509695-11509775 0.0004 29_[+1]_43 chrV:6476219-6476299 0.0004 42_[+1]_30 chrII:9325716-9325796 0.0004 44_[+1]_28 chrIV:9160045-9160125 0.0004 64_[+1]_8 chrIV:12910015-12910095 0.00047 20_[+1]_52 chrII:1159830-1159910 0.00047 46_[+1]_26 chrII:10653739-10653819 0.00047 72_[+1] chrIII:9472607-9472687 0.00047 54_[+1]_18 chrII:14965051-14965131 0.00047 4_[+1]_68 chrX:4749255-4749335 0.00047 9_[+1]_63 chrV:6823586-6823666 0.00047 11_[+1]_61 chrX:13257684-13257764 0.00053 15_[+1]_57 chrIV:189242-189322 0.00053 66_[+1]_6 chrI:2791540-2791620 0.00053 14_[+1]_58 chrX:6924608-6924688 0.00065 70_[+1]_2 chrII:4194281-4194361 0.00065 48_[+1]_24 chrII:10221779-10221859 0.00065 43_[+1]_29 chrX:3306749-3306829 0.00065 21_[+1]_51 chrII:12816784-12816864 0.00079 71_[+1]_1 chrX:9266704-9266784 0.00079 56_[+1]_16 chrX:7296452-7296532 0.00079 30_[+1]_42 chrV:6812034-6812114 0.00079 12_[+1]_60 chrII:1871006-1871086 0.00082 34_[+1]_38 chrX:16337597-16337677 0.00082 14_[+1]_58 chrI:5570638-5570718 0.001 28_[+1]_44 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTTATCA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TCTTATCA width=8 seqs=104 chrIV:6017852-6017932 ( 2) TCTTATCA 1 chrV:4737883-4737963 ( 26) TCTTATCA 1 chrX:13342030-13342110 ( 71) TCTTATCA 1 chrX:9850367-9850447 ( 30) TCTTATCA 1 chrII:2323271-2323351 ( 70) TCTTATCA 1 chrIV:17342360-17342440 ( 71) TCTTATCA 1 chrX:17197979-17198059 ( 68) TCTTATCA 1 chrV:8427245-8427325 ( 20) TCTTATCA 1 chrIV:6048639-6048719 ( 38) TCTTATCA 1 chrIII:4906537-4906617 ( 6) TCTTATCA 1 chrI:1017468-1017548 ( 17) TCTTATCA 1 chrIII:5916109-5916189 ( 39) TCTTATCA 1 chrX:16487424-16487504 ( 62) TCTTATCA 1 chrIV:6275969-6276049 ( 33) TCTTATCA 1 chrV:12933793-12933873 ( 35) TCTTATCA 1 chrIV:7326925-7327005 ( 35) TCTTATCA 1 chrV:11007829-11007909 ( 53) TCTTATCA 1 chrV:4770579-4770659 ( 11) TCTTATCA 1 chrIV:4562905-4562985 ( 1) TCTTATCA 1 chrII:11438568-11438648 ( 29) TCTTATCA 1 chrX:7727766-7727846 ( 29) CCTTATCA 1 chrIV:10970484-10970564 ( 65) CCTTATCA 1 chrI:4314485-4314565 ( 29) CCTTATCA 1 chrV:449852-449932 ( 13) CCTTATCA 1 chrX:7812047-7812127 ( 10) CCTTATCA 1 chrI:12505969-12506049 ( 34) CCTTATCA 1 chrIII:9786950-9787030 ( 13) CCTTATCA 1 chrIII:5546888-5546968 ( 53) CCTTATCA 1 chrV:13421870-13421950 ( 4) CCTTATCA 1 chrX:670745-670825 ( 36) CCTTATCA 1 chrX:816118-816198 ( 1) CCTTATCA 1 chrIII:11193377-11193457 ( 28) CCTTATCA 1 chrX:3564080-3564160 ( 15) GCTTATCA 1 chrX:3611366-3611446 ( 57) GCTTATCA 1 chrIV:10420543-10420623 ( 26) GCTTATCA 1 chrII:6178126-6178206 ( 5) GCTTATCA 1 chrV:16605624-16605704 ( 22) GCTTATCA 1 chrII:9116539-9116619 ( 22) GCTTATCA 1 chrX:3548859-3548939 ( 5) GCTTATCA 1 chrIII:11268688-11268768 ( 12) GCTTATCA 1 chrX:12243037-12243117 ( 21) GCTTATCA 1 chrIII:12138385-12138465 ( 44) GCTTATCA 1 chrIII:6693423-6693503 ( 5) TGTTATCA 1 chrIII:7479099-7479179 ( 20) TTTTATCA 1 chrI:4480979-4481059 ( 73) TTTTATCA 1 chrIII:4918448-4918528 ( 1) TGTTATCA 1 chrIII:4468530-4468610 ( 63) TGTTATCA 1 chrX:10748306-10748386 ( 20) TGTTATCA 1 chrV:5647557-5647637 ( 35) TTTTATCA 1 chrX:17185840-17185920 ( 45) TGTTATCA 1 chrV:9526662-9526742 ( 64) TTTTATCA 1 chrIV:11257640-11257720 ( 27) TTTTATCA 1 chrX:2018414-2018494 ( 14) TTTTATCA 1 chrIII:5015248-5015328 ( 30) TGTTATCA 1 chrX:5013963-5014043 ( 42) TTTTATCA 1 chrII:13814068-13814148 ( 50) TTTTATCA 1 chrX:13947384-13947464 ( 15) TCTTATCG 1 chrIII:1222224-1222304 ( 6) TCTTATCG 1 chrI:6203865-6203945 ( 59) TCTTATCG 1 chrIII:3764184-3764264 ( 39) TCTTATCG 1 chrIV:10388436-10388516 ( 13) ACTTATCA 1 chrX:6169421-6169501 ( 12) CTTTATCA 1 chrIV:1379093-1379173 ( 49) CGTTATCA 1 chrII:10627259-10627339 ( 53) CTTTATCA 1 chrV:6676250-6676330 ( 44) CGTTATCA 1 chrIV:552063-552143 ( 12) GTTTATCA 1 chrV:10484129-10484209 ( 22) GGTTATCA 1 chrV:6881872-6881952 ( 27) GTTTATCA 1 chrI:2962426-2962506 ( 21) GTTTATCA 1 chrII:5806687-5806767 ( 28) GGTTATCA 1 chrIV:12700364-12700444 ( 40) GGTTATCA 1 chrV:13578812-13578892 ( 44) TCTTTTCA 1 chrIV:9537663-9537743 ( 61) TCTTTTCA 1 chrI:7355900-7355980 ( 44) TCTTTTCA 1 chrII:5749859-5749939 ( 13) TCTTTTCA 1 chrX:10340195-10340275 ( 18) TCTTCTCA 1 chrIV:8475418-8475498 ( 14) TCTTCTCA 1 chrII:5751513-5751593 ( 3) TCTTCTCA 1 chrIV:4148019-4148099 ( 26) TTTTATCG 1 chrX:11509695-11509775 ( 30) TGTTATCG 1 chrV:6476219-6476299 ( 43) TTTTATCG 1 chrII:9325716-9325796 ( 45) TTTTATCG 1 chrIV:9160045-9160125 ( 65) TTTTATCG 1 chrIV:12910015-12910095 ( 21) AGTTATCA 1 chrII:1159830-1159910 ( 47) AGTTATCA 1 chrII:10653739-10653819 ( 73) ATTTATCA 1 chrIII:9472607-9472687 ( 55) ATTTATCA 1 chrII:14965051-14965131 ( 5) ATTTATCA 1 chrX:4749255-4749335 ( 10) AGTTATCA 1 chrV:6823586-6823666 ( 12) ATTTATCA 1 chrX:13257684-13257764 ( 16) ACTTATCG 1 chrIV:189242-189322 ( 67) ACTTATCG 1 chrI:2791540-2791620 ( 15) GCTTTTCA 1 chrX:6924608-6924688 ( 71) CTTTATCG 1 chrII:4194281-4194361 ( 49) TTTTTTCA 1 chrII:10221779-10221859 ( 44) CGTTATCG 1 chrX:3306749-3306829 ( 22) TTTTTTCA 1 chrII:12816784-12816864 ( 72) TATTATCA 1 chrX:9266704-9266784 ( 57) TTTTCTCA 1 chrX:7296452-7296532 ( 31) TTTTCTCA 1 chrV:6812034-6812114 ( 13) TATTATCA 1 chrII:1871006-1871086 ( 35) ACTTTTCA 1 chrX:16337597-16337677 ( 15) ACTTTTCA 1 chrI:5570638-5570718 ( 29) TCTTATCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTTATCA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 7.97998 E= 2.6e-049 -140 -19 -30 88 -398 155 -39 -25 -1334 -1334 -1334 175 -1334 -1334 -1334 175 151 -204 -1334 -178 -1334 -1334 -1334 175 -1334 234 -1334 -1334 151 -1334 -69 -495 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTTATCA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 104 E= 2.6e-049 0.115385 0.173077 0.163462 0.548077 0.019231 0.576923 0.153846 0.250000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.865385 0.048077 0.000000 0.086538 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.865385 0.000000 0.125000 0.009615 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTTATCA MEME-1 regular expression -------------------------------------------------------------------------------- T[CT]TTATCA -------------------------------------------------------------------------------- Time 9.94 secs. ******************************************************************************** ******************************************************************************** MOTIF YTGATAAG MEME-2 width = 8 sites = 83 llr = 661 E-value = 3.9e-045 ******************************************************************************** -------------------------------------------------------------------------------- Motif YTGATAAG MEME-2 Description -------------------------------------------------------------------------------- Simplified A 2::a:aa: pos.-specific C 41:::::3 probability G 2:a::::6 matrix T 39::a::2 bits 2.3 * 2.1 * 1.9 * 1.6 ***** Relative 1.4 ****** Entropy 1.2 ****** (11.5 bits) 0.9 ****** 0.7 ******* 0.5 ******* 0.2 ******** 0.0 -------- Multilevel CTGATAAG consensus T C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTGATAAG MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIV:15849848-15849928 69 1.98e-05 TTCCAGAAAA CTGATAAG AGAA chrV:7075823-7075903 62 1.98e-05 TATAGTGTGA CTGATAAG CGAGCACGAC chrII:4598967-4599047 15 1.98e-05 CTTATATTCT CTGATAAG GAGTTCTATG chrII:12816784-12816864 10 1.98e-05 ACACATAGA CTGATAAG AAAATGATAC chrIV:12382998-12383078 40 1.98e-05 CAATTGGAAA CTGATAAG AAATAGGGGT chrIV:7237937-7238017 63 1.98e-05 TATAGTTAAA CTGATAAG AGTTTTAGCT chrII:10094357-10094437 19 1.98e-05 TATGATTCAG CTGATAAG CTCCTCTCTA chrX:17195220-17195300 67 1.98e-05 CACCCCTTGA CTGATAAG AAGAAA chrX:11252100-11252180 63 1.98e-05 CACGGATTCA CTGATAAG AACAGGAAAT chrI:10586819-10586899 12 1.98e-05 TGACAAAAAA CTGATAAG AAGGAGAGCT chrIV:10439078-10439158 33 1.98e-05 ACAATTGCCA CTGATAAG CCTCATTCAA chrII:7639206-7639286 38 1.98e-05 TGACGACTCT CTGATAAG CGATGACAAA chrII:5749859-5749939 56 1.98e-05 TAAACTCGGA CTGATAAG TCACCATAAA chrIV:673476-673556 51 1.98e-05 ACGCACCAAA CTGATAAG CAATACTGTC chrI:10833512-10833592 3 4.96e-05 TT TTGATAAG GGCAACCGAG chrX:13421221-13421301 69 4.96e-05 TAGCGGCTTA TTGATAAG AAAT chrX:11105362-11105442 17 4.96e-05 GTGCAAGTAG TTGATAAG AAATGGTTTC chrV:6409006-6409086 12 4.96e-05 TTGCCCTCTC TTGATAAG AGCACGAAGT chrIV:10388436-10388516 52 4.96e-05 GCTTCGTAAA TTGATAAG AAATCAGTCA chrX:14769186-14769266 28 4.96e-05 CGGCAAGTTG TTGATAAG CGGGCAGCAA chrI:10382037-10382117 17 4.96e-05 CGTGTTTCTG TTGATAAG AGTGACGGCG chrIII:5916109-5916189 56 4.96e-05 ATTATCAGCA TTGATAAG AACGAGCTCA chrX:11499930-11500010 14 4.96e-05 TTTTTATTGT TTGATAAG CCAATTTTGC chrI:2791540-2791620 5 4.96e-05 CGAA TTGATAAG AAGCTTTTCA chrI:7913423-7913503 48 4.96e-05 GCAAGAAGAA TTGATAAG GAATTGAACC chrII:10859538-10859618 20 8.92e-05 TTGTAGCTTT CTGATAAC AGAATAGTGC chrIV:8475418-8475498 44 8.92e-05 GTTTTTCCAA GTGATAAG AAACCGACCG chrIV:1379093-1379173 57 8.92e-05 CTCGTTATCA GTGATAAG CGCCCCTGAA chrI:14051112-14051192 29 8.92e-05 GCCTGTCACA CTGATAAC GATATGTTGA chrX:13334006-13334086 35 8.92e-05 AGTCAGAAAG GTGATAAG CGCTTCGTGA chrII:10653739-10653819 24 8.92e-05 CTAGTTTCAG CTGATAAC GATGTTCAAA chrI:12504962-12505042 61 8.92e-05 AAATTAAAAA GTGATAAG GAGTAAAGTG chrX:7902011-7902091 11 8.92e-05 CGTTGAAAAA CTGATAAC GATATGTGCG chrV:11859608-11859688 20 8.92e-05 TCATGTTCTA CTGATAAC GAACCGATTC chrII:8867021-8867101 38 8.92e-05 AAAAAATTAA GTGATAAG ACAAGATGAA chrII:10861011-10861091 51 8.92e-05 GCAAACACAT GTGATAAG AAAACCAAAG chrX:11925355-11925435 65 8.92e-05 CAAGGGGCAA CTGATAAC CATGAAAT chrII:4194281-4194361 34 8.92e-05 CCCAAAAAAG GTGATAAG CGAAACTTTT chrII:6377711-6377791 58 8.92e-05 CATGAGGTTA CTGATAAC ATAAAAATGA chrV:6881872-6881952 58 8.92e-05 TTCTTGAAAA CTGATAAC TAAAAGTGTC chrX:1117373-1117453 31 8.92e-05 CAACGTGTTG CTGATAAC GTTTGTACCG chrI:39009-39089 15 8.92e-05 TGAACTACTA GTGATAAG CGGTGAAACG chrV:9526662-9526742 72 8.92e-05 TTTTTTATCA CTGATAAC A chrV:11756002-11756082 27 8.92e-05 CTCTTGTTAA GTGATAAG AGCGCGGCGC chrII:8032798-8032878 56 1.20e-04 AAGGTTTATA ATGATAAG GAATATTTTT chrV:10404860-10404940 48 1.20e-04 CAATCACGGA ATGATAAG AAACGGAAAC chrIII:956135-956215 31 1.20e-04 CAATATGAAA ATGATAAG AGAAAACCAA chrX:5346424-5346504 47 1.20e-04 CGCGTGTGCA ATGATAAG AAGAAGGGTA chrX:3548859-3548939 23 1.20e-04 GTTTCGTTTC ATGATAAG TGGTTTGCGA chrIV:3819555-3819635 2 1.20e-04 G ATGATAAG GACGATGGCT chrX:4672001-4672081 58 1.49e-04 GGCAATATTA TTGATAAC CTCACTGTCA chrII:8991754-8991834 7 1.49e-04 AAAACT TTGATAAC GGGGAAGAAT chrV:6210113-6210193 29 1.49e-04 GAAATAAAAA TTGATAAC AAAAAAAGTG chrV:8427245-8427325 56 1.91e-04 CTTGAATTAA CTGATAAT TCTTGAATTA chrI:1017468-1017548 54 1.91e-04 TTCAGGCGGA CTGATAAT AAATCATTGA chrV:2765212-2765292 12 1.91e-04 AATATTGATA CTGATAAT CAATGCTTTT chrX:2906480-2906560 56 1.91e-04 ATATTTCCGT CCGATAAG CAGGGCGGGA chrX:14770536-14770616 49 1.91e-04 AAACCACGTA CTGATAAT TTGACCAAGT chrIII:11195700-11195780 66 1.91e-04 TGATAAAAAA CTGATAAT AAGTCTC chrX:2018414-2018494 70 1.91e-04 GTTGTAACTG CTGATAAT GCA chrII:14965051-14965131 44 2.11e-04 CACATAAAAA GTGATAAC AACTGTTCAA chrV:1464697-1464777 40 2.11e-04 TATATATTCT GTGATAAC GGGCAGGAAG chrIII:7315289-7315369 68 2.41e-04 GCTGTGTGAA ATGATAAC GATAT chrIV:8030256-8030336 45 2.41e-04 TTTGTGATTG ATGATAAC GAGTGACGGT chrIV:4285172-4285252 57 2.41e-04 CGCAACATTG ATGATAAC AGACCTATAA chrX:5669862-5669942 73 2.41e-04 CGAGGTCATG ATGATAAC chrI:4480979-4481059 5 3.05e-04 TCTA TTGATAAT ACAGCGCCAG chrIII:4918448-4918528 36 3.05e-04 GGTAGCCAAT TTGATAAT CTCTTGAGCA chrX:11264889-11264969 6 3.05e-04 GTGAG TTGATAAT ATTGCAACAT chrII:13715912-13715992 36 3.05e-04 GAGGCCTTTT TCGATAAG GCCTGGCACA chrV:13421870-13421950 34 3.05e-04 AGTCCATCCA TCGATAAG TTTTCCTTTT chrV:5647557-5647637 52 3.05e-04 AATCACTCAC TTGATAAT TTACACGGGT chrII:7694038-7694118 59 3.05e-04 TAAAAAGTAA TTGATAAT AAAGAAGAGA chrIV:11259723-11259803 69 3.05e-04 GTGATCATTT TTGATAAT GAGT chrX:5813277-5813357 34 3.61e-04 GAATTTTTTT GCGATAAG AGCGTGAGTT chrX:7559081-7559161 70 3.61e-04 TCCTTAATTT GTGATAAT AGA chrIV:9160045-9160125 9 3.61e-04 TTGCAGTA GCGATAAG AACTGTTGGG chrI:3249167-3249247 46 3.61e-04 CGACCCCCGT CCGATAAC ATTGTCACAT chrV:8460477-8460557 24 4.26e-04 TTATGGAACA ATGATAAT GACGGGAAAT chrV:6476219-6476299 58 4.26e-04 TCGAAAAAAG ACGATAAG AGACGGACGG chrV:9218819-9218899 65 4.26e-04 AGCAACAGAG ACGATAAG AGAACGGA chrII:6244320-6244400 47 4.46e-04 GAGACACAAA TCGATAAC AATGTGGAAA chrII:6178126-6178206 67 5.28e-04 CTCCTATTGT TCGATAAT TCGAGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTGATAAG MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:15849848-15849928 2e-05 68_[+2]_4 chrV:7075823-7075903 2e-05 61_[+2]_11 chrII:4598967-4599047 2e-05 14_[+2]_58 chrII:12816784-12816864 2e-05 9_[+2]_63 chrIV:12382998-12383078 2e-05 39_[+2]_33 chrIV:7237937-7238017 2e-05 62_[+2]_10 chrII:10094357-10094437 2e-05 18_[+2]_54 chrX:17195220-17195300 2e-05 66_[+2]_6 chrX:11252100-11252180 2e-05 62_[+2]_10 chrI:10586819-10586899 2e-05 11_[+2]_61 chrIV:10439078-10439158 2e-05 32_[+2]_40 chrII:7639206-7639286 2e-05 37_[+2]_35 chrII:5749859-5749939 2e-05 55_[+2]_17 chrIV:673476-673556 2e-05 50_[+2]_22 chrI:10833512-10833592 5e-05 2_[+2]_70 chrX:13421221-13421301 5e-05 68_[+2]_4 chrX:11105362-11105442 5e-05 16_[+2]_56 chrV:6409006-6409086 5e-05 11_[+2]_61 chrIV:10388436-10388516 5e-05 51_[+2]_21 chrX:14769186-14769266 5e-05 27_[+2]_45 chrI:10382037-10382117 5e-05 16_[+2]_56 chrIII:5916109-5916189 5e-05 55_[+2]_17 chrX:11499930-11500010 5e-05 13_[+2]_59 chrI:2791540-2791620 5e-05 4_[+2]_68 chrI:7913423-7913503 5e-05 47_[+2]_25 chrII:10859538-10859618 8.9e-05 19_[+2]_53 chrIV:8475418-8475498 8.9e-05 43_[+2]_29 chrIV:1379093-1379173 8.9e-05 56_[+2]_16 chrI:14051112-14051192 8.9e-05 28_[+2]_44 chrX:13334006-13334086 8.9e-05 34_[+2]_38 chrII:10653739-10653819 8.9e-05 23_[+2]_49 chrI:12504962-12505042 8.9e-05 60_[+2]_12 chrX:7902011-7902091 8.9e-05 10_[+2]_62 chrV:11859608-11859688 8.9e-05 19_[+2]_53 chrII:8867021-8867101 8.9e-05 37_[+2]_35 chrII:10861011-10861091 8.9e-05 50_[+2]_22 chrX:11925355-11925435 8.9e-05 64_[+2]_8 chrII:4194281-4194361 8.9e-05 33_[+2]_39 chrII:6377711-6377791 8.9e-05 57_[+2]_15 chrV:6881872-6881952 8.9e-05 57_[+2]_15 chrX:1117373-1117453 8.9e-05 30_[+2]_42 chrI:39009-39089 8.9e-05 14_[+2]_58 chrV:9526662-9526742 8.9e-05 71_[+2]_1 chrV:11756002-11756082 8.9e-05 26_[+2]_46 chrII:8032798-8032878 0.00012 55_[+2]_17 chrV:10404860-10404940 0.00012 47_[+2]_25 chrIII:956135-956215 0.00012 30_[+2]_42 chrX:5346424-5346504 0.00012 46_[+2]_26 chrX:3548859-3548939 0.00012 22_[+2]_50 chrIV:3819555-3819635 0.00012 1_[+2]_71 chrX:4672001-4672081 0.00015 57_[+2]_15 chrII:8991754-8991834 0.00015 6_[+2]_66 chrV:6210113-6210193 0.00015 28_[+2]_44 chrV:8427245-8427325 0.00019 55_[+2]_17 chrI:1017468-1017548 0.00019 53_[+2]_19 chrV:2765212-2765292 0.00019 11_[+2]_61 chrX:2906480-2906560 0.00019 55_[+2]_17 chrX:14770536-14770616 0.00019 48_[+2]_24 chrIII:11195700-11195780 0.00019 65_[+2]_7 chrX:2018414-2018494 0.00019 69_[+2]_3 chrII:14965051-14965131 0.00021 43_[+2]_29 chrV:1464697-1464777 0.00021 39_[+2]_33 chrIII:7315289-7315369 0.00024 67_[+2]_5 chrIV:8030256-8030336 0.00024 44_[+2]_28 chrIV:4285172-4285252 0.00024 56_[+2]_16 chrX:5669862-5669942 0.00024 72_[+2] chrI:4480979-4481059 0.00031 4_[+2]_68 chrIII:4918448-4918528 0.00031 35_[+2]_37 chrX:11264889-11264969 0.00031 5_[+2]_67 chrII:13715912-13715992 0.00031 35_[+2]_37 chrV:13421870-13421950 0.00031 33_[+2]_39 chrV:5647557-5647637 0.00031 51_[+2]_21 chrII:7694038-7694118 0.00031 58_[+2]_14 chrIV:11259723-11259803 0.00031 68_[+2]_4 chrX:5813277-5813357 0.00036 33_[+2]_39 chrX:7559081-7559161 0.00036 69_[+2]_3 chrIV:9160045-9160125 0.00036 8_[+2]_64 chrI:3249167-3249247 0.00036 45_[+2]_27 chrV:8460477-8460557 0.00043 23_[+2]_49 chrV:6476219-6476299 0.00043 57_[+2]_15 chrV:9218819-9218899 0.00043 64_[+2]_8 chrII:6244320-6244400 0.00045 46_[+2]_26 chrII:6178126-6178206 0.00053 66_[+2]_6 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTGATAAG MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF YTGATAAG width=8 seqs=83 chrIV:15849848-15849928 ( 69) CTGATAAG 1 chrV:7075823-7075903 ( 62) CTGATAAG 1 chrII:4598967-4599047 ( 15) CTGATAAG 1 chrII:12816784-12816864 ( 10) CTGATAAG 1 chrIV:12382998-12383078 ( 40) CTGATAAG 1 chrIV:7237937-7238017 ( 63) CTGATAAG 1 chrII:10094357-10094437 ( 19) CTGATAAG 1 chrX:17195220-17195300 ( 67) CTGATAAG 1 chrX:11252100-11252180 ( 63) CTGATAAG 1 chrI:10586819-10586899 ( 12) CTGATAAG 1 chrIV:10439078-10439158 ( 33) CTGATAAG 1 chrII:7639206-7639286 ( 38) CTGATAAG 1 chrII:5749859-5749939 ( 56) CTGATAAG 1 chrIV:673476-673556 ( 51) CTGATAAG 1 chrI:10833512-10833592 ( 3) TTGATAAG 1 chrX:13421221-13421301 ( 69) TTGATAAG 1 chrX:11105362-11105442 ( 17) TTGATAAG 1 chrV:6409006-6409086 ( 12) TTGATAAG 1 chrIV:10388436-10388516 ( 52) TTGATAAG 1 chrX:14769186-14769266 ( 28) TTGATAAG 1 chrI:10382037-10382117 ( 17) TTGATAAG 1 chrIII:5916109-5916189 ( 56) TTGATAAG 1 chrX:11499930-11500010 ( 14) TTGATAAG 1 chrI:2791540-2791620 ( 5) TTGATAAG 1 chrI:7913423-7913503 ( 48) TTGATAAG 1 chrII:10859538-10859618 ( 20) CTGATAAC 1 chrIV:8475418-8475498 ( 44) GTGATAAG 1 chrIV:1379093-1379173 ( 57) GTGATAAG 1 chrI:14051112-14051192 ( 29) CTGATAAC 1 chrX:13334006-13334086 ( 35) GTGATAAG 1 chrII:10653739-10653819 ( 24) CTGATAAC 1 chrI:12504962-12505042 ( 61) GTGATAAG 1 chrX:7902011-7902091 ( 11) CTGATAAC 1 chrV:11859608-11859688 ( 20) CTGATAAC 1 chrII:8867021-8867101 ( 38) GTGATAAG 1 chrII:10861011-10861091 ( 51) GTGATAAG 1 chrX:11925355-11925435 ( 65) CTGATAAC 1 chrII:4194281-4194361 ( 34) GTGATAAG 1 chrII:6377711-6377791 ( 58) CTGATAAC 1 chrV:6881872-6881952 ( 58) CTGATAAC 1 chrX:1117373-1117453 ( 31) CTGATAAC 1 chrI:39009-39089 ( 15) GTGATAAG 1 chrV:9526662-9526742 ( 72) CTGATAAC 1 chrV:11756002-11756082 ( 27) GTGATAAG 1 chrII:8032798-8032878 ( 56) ATGATAAG 1 chrV:10404860-10404940 ( 48) ATGATAAG 1 chrIII:956135-956215 ( 31) ATGATAAG 1 chrX:5346424-5346504 ( 47) ATGATAAG 1 chrX:3548859-3548939 ( 23) ATGATAAG 1 chrIV:3819555-3819635 ( 2) ATGATAAG 1 chrX:4672001-4672081 ( 58) TTGATAAC 1 chrII:8991754-8991834 ( 7) TTGATAAC 1 chrV:6210113-6210193 ( 29) TTGATAAC 1 chrV:8427245-8427325 ( 56) CTGATAAT 1 chrI:1017468-1017548 ( 54) CTGATAAT 1 chrV:2765212-2765292 ( 12) CTGATAAT 1 chrX:2906480-2906560 ( 56) CCGATAAG 1 chrX:14770536-14770616 ( 49) CTGATAAT 1 chrIII:11195700-11195780 ( 66) CTGATAAT 1 chrX:2018414-2018494 ( 70) CTGATAAT 1 chrII:14965051-14965131 ( 44) GTGATAAC 1 chrV:1464697-1464777 ( 40) GTGATAAC 1 chrIII:7315289-7315369 ( 68) ATGATAAC 1 chrIV:8030256-8030336 ( 45) ATGATAAC 1 chrIV:4285172-4285252 ( 57) ATGATAAC 1 chrX:5669862-5669942 ( 73) ATGATAAC 1 chrI:4480979-4481059 ( 5) TTGATAAT 1 chrIII:4918448-4918528 ( 36) TTGATAAT 1 chrX:11264889-11264969 ( 6) TTGATAAT 1 chrII:13715912-13715992 ( 36) TCGATAAG 1 chrV:13421870-13421950 ( 34) TCGATAAG 1 chrV:5647557-5647637 ( 52) TTGATAAT 1 chrII:7694038-7694118 ( 59) TTGATAAT 1 chrIV:11259723-11259803 ( 69) TTGATAAT 1 chrX:5813277-5813357 ( 34) GCGATAAG 1 chrX:7559081-7559161 ( 70) GTGATAAT 1 chrIV:9160045-9160125 ( 9) GCGATAAG 1 chrI:3249167-3249247 ( 46) CCGATAAC 1 chrV:8460477-8460557 ( 24) ATGATAAT 1 chrV:6476219-6476299 ( 58) ACGATAAG 1 chrV:9218819-9218899 ( 65) ACGATAAG 1 chrII:6244320-6244400 ( 47) TCGATAAC 1 chrII:6178126-6178206 ( 67) TCGATAAT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTGATAAG MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.63023 E= 3.9e-045 -96 96 -25 -4 -1302 -71 -1302 156 -1302 -1302 231 -1302 172 -1302 -1302 -1302 -1302 -1302 -1302 175 172 -1302 -1302 -1302 172 -1302 -1302 -1302 -1302 36 149 -72 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTGATAAG MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 83 E= 3.9e-045 0.156627 0.385542 0.168675 0.289157 0.000000 0.120482 0.000000 0.879518 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.253012 0.566265 0.180723 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTGATAAG MEME-2 regular expression -------------------------------------------------------------------------------- [CT]TGATAA[GC] -------------------------------------------------------------------------------- Time 14.62 secs. ******************************************************************************** ******************************************************************************** MOTIF RGAGAGAG MEME-3 width = 8 sites = 33 llr = 269 E-value = 3.3e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif RGAGAGAG MEME-3 Description -------------------------------------------------------------------------------- Simplified A 519:8:a: pos.-specific C ::1::1:3 probability G 59:a:8:7 matrix T ::1:2::: bits 2.3 * 2.1 * 1.9 * * 1.6 * * ** Relative 1.4 * * *** Entropy 1.2 ******* (11.8 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GGAGAGAG consensus A C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGAGAGAG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrV:331416-331496 71 9.22e-06 AGTGTTGGGA GGAGAGAG GA chrV:11007829-11007909 22 9.22e-06 TTGCTGGTGG GGAGAGAG AAAGTCTTCC chrX:12243037-12243117 48 9.22e-06 ACGATTTTGC GGAGAGAG TCGGCGTTAG chrI:2962426-2962506 41 9.22e-06 TTTGGAAAGG GGAGAGAG GAGGGAACGG chrIII:5916109-5916189 16 2.32e-05 TTTTCTCGAT AGAGAGAG AGAGAGAAAT chrII:10861011-10861091 23 2.32e-05 agagagaaag agagagag aATAGAAGCA chrI:3533841-3533921 69 2.32e-05 AAATGGAAAG AGAGAGAG GAGT chrIV:12700364-12700444 29 2.32e-05 GTGGTgagag agagagag agagGTTATC chrIII:891182-891262 8 3.22e-05 CATTTGA GGAGAGAC AAACCGGAAA chrII:4469231-4469311 60 3.22e-05 AATGACCGGC GGAGAGAC GCAAACAGTT chrI:3249167-3249247 13 3.22e-05 AAGTGCAAGA GGAGAGAC TGTAATATGC chrII:12816784-12816864 30 4.60e-05 AATGATACGC AGAGAGAC AGTGAGAGTA chrIII:11195700-11195780 27 4.60e-05 CATACGAGAC AGAGAGAC GCCGTACATT chrII:76842-76922 34 4.60e-05 TCACCCTCAC AGAGAGAC TGTTAACACC chrI:5290811-5290891 37 5.50e-05 GCACAAAAAC GGAGTGAG AAGAACTATA chrX:4971107-4971187 40 5.50e-05 CCGATTGGAA GGAGTGAG TTGGCCTGCT chrIV:12869544-12869624 43 6.41e-05 ATTTTGAGAC GGAGACAG CTAAAACCGA chrIII:6693423-6693503 48 7.77e-05 ACATGAAAAT AGAGTGAG AGATTGTGAG chrX:7998160-7998240 16 7.77e-05 TAGTTGGGAA AGAGTGAG AAACGTGATC chrX:5669862-5669942 13 9.74e-05 AAATACTGAA AGAGACAG GAAAACGACA chrX:11556472-11556552 47 9.74e-05 TCTTTTTCCG AGAGACAG TCTGATAGCA chrII:4194281-4194361 3 1.15e-04 AC GGAGTGAC GAGTCACACT chrII:2320266-2320346 17 1.15e-04 GTTGTGGTGG GGTGAGAG TGTACGAGGG chrIV:6017852-6017932 55 1.24e-04 GAGCATAACG AGCGAGAG CATTGATTTT chrII:7694038-7694118 2 1.33e-04 A CGAGAGAG CGCTATGTGC chrII:6244320-6244400 36 1.42e-04 CTACTGATAC GGAGACAC AAATCGATAA chrIII:3281998-3282078 65 1.48e-04 TGAAACGGAT GGAGAGCG GGGAAAAA chrIV:552063-552143 62 1.89e-04 TGGACGTACA AGTGAGAG AAAGTTGACT chrIII:3621333-3621413 42 1.89e-04 GAGAAAAAGA GAAGAGAG GAACGCGCCA chrX:2543491-2543571 14 1.95e-04 GGTAAGAAGT GGCGAGAC TAATTCATGC chrII:9797828-9797908 66 2.18e-04 ATGGATGATA GCAGAGAG CACGACA chrII:5749859-5749939 72 2.66e-04 AGTCACCATA AAAGAGAG T chrX:670745-670825 2 3.91e-04 A AGAGAAAG TGAGGGGAGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGAGAGAG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:331416-331496 9.2e-06 70_[+3]_2 chrV:11007829-11007909 9.2e-06 21_[+3]_51 chrX:12243037-12243117 9.2e-06 47_[+3]_25 chrI:2962426-2962506 9.2e-06 40_[+3]_32 chrIII:5916109-5916189 2.3e-05 15_[+3]_57 chrII:10861011-10861091 2.3e-05 22_[+3]_50 chrI:3533841-3533921 2.3e-05 68_[+3]_4 chrIV:12700364-12700444 2.3e-05 28_[+3]_44 chrIII:891182-891262 3.2e-05 7_[+3]_65 chrII:4469231-4469311 3.2e-05 59_[+3]_13 chrI:3249167-3249247 3.2e-05 12_[+3]_60 chrII:12816784-12816864 4.6e-05 29_[+3]_43 chrIII:11195700-11195780 4.6e-05 26_[+3]_46 chrII:76842-76922 4.6e-05 33_[+3]_39 chrI:5290811-5290891 5.5e-05 36_[+3]_36 chrX:4971107-4971187 5.5e-05 39_[+3]_33 chrIV:12869544-12869624 6.4e-05 42_[+3]_30 chrIII:6693423-6693503 7.8e-05 47_[+3]_25 chrX:7998160-7998240 7.8e-05 15_[+3]_57 chrX:5669862-5669942 9.7e-05 12_[+3]_60 chrX:11556472-11556552 9.7e-05 46_[+3]_26 chrII:4194281-4194361 0.00012 2_[+3]_70 chrII:2320266-2320346 0.00012 16_[+3]_56 chrIV:6017852-6017932 0.00012 54_[+3]_18 chrII:7694038-7694118 0.00013 1_[+3]_71 chrII:6244320-6244400 0.00014 35_[+3]_37 chrIII:3281998-3282078 0.00015 64_[+3]_8 chrIV:552063-552143 0.00019 61_[+3]_11 chrIII:3621333-3621413 0.00019 41_[+3]_31 chrX:2543491-2543571 0.0002 13_[+3]_59 chrII:9797828-9797908 0.00022 65_[+3]_7 chrII:5749859-5749939 0.00027 71_[+3]_1 chrX:670745-670825 0.00039 1_[+3]_71 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGAGAGAG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RGAGAGAG width=8 seqs=33 chrV:331416-331496 ( 71) GGAGAGAG 1 chrV:11007829-11007909 ( 22) GGAGAGAG 1 chrX:12243037-12243117 ( 48) GGAGAGAG 1 chrI:2962426-2962506 ( 41) GGAGAGAG 1 chrIII:5916109-5916189 ( 16) AGAGAGAG 1 chrII:10861011-10861091 ( 23) AGAGAGAG 1 chrI:3533841-3533921 ( 69) AGAGAGAG 1 chrIV:12700364-12700444 ( 29) AGAGAGAG 1 chrIII:891182-891262 ( 8) GGAGAGAC 1 chrII:4469231-4469311 ( 60) GGAGAGAC 1 chrI:3249167-3249247 ( 13) GGAGAGAC 1 chrII:12816784-12816864 ( 30) AGAGAGAC 1 chrIII:11195700-11195780 ( 27) AGAGAGAC 1 chrII:76842-76922 ( 34) AGAGAGAC 1 chrI:5290811-5290891 ( 37) GGAGTGAG 1 chrX:4971107-4971187 ( 40) GGAGTGAG 1 chrIV:12869544-12869624 ( 43) GGAGACAG 1 chrIII:6693423-6693503 ( 48) AGAGTGAG 1 chrX:7998160-7998240 ( 16) AGAGTGAG 1 chrX:5669862-5669942 ( 13) AGAGACAG 1 chrX:11556472-11556552 ( 47) AGAGACAG 1 chrII:4194281-4194361 ( 3) GGAGTGAC 1 chrII:2320266-2320346 ( 17) GGTGAGAG 1 chrIV:6017852-6017932 ( 55) AGCGAGAG 1 chrII:7694038-7694118 ( 2) CGAGAGAG 1 chrII:6244320-6244400 ( 36) GGAGACAC 1 chrIII:3281998-3282078 ( 65) GGAGAGCG 1 chrIV:552063-552143 ( 62) AGTGAGAG 1 chrIII:3621333-3621413 ( 42) GAAGAGAG 1 chrX:2543491-2543571 ( 14) GGCGAGAC 1 chrII:9797828-9797908 ( 66) GCAGAGAG 1 chrII:5749859-5749939 ( 72) AAAGAGAG 1 chrX:670745-670825 ( 2) AGAGAAAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGAGAGAG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.87609 E= 3.3e+002 58 -270 136 -1169 -233 -270 218 -1169 153 -170 -1169 -229 -1169 -1169 231 -1169 148 -1169 -1169 -97 -332 -70 208 -1169 167 -270 -1169 -1169 -1169 46 185 -1169 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGAGAGAG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 33 E= 3.3e+002 0.454545 0.030303 0.515152 0.000000 0.060606 0.030303 0.909091 0.000000 0.878788 0.060606 0.000000 0.060606 0.000000 0.000000 1.000000 0.000000 0.848485 0.000000 0.000000 0.151515 0.030303 0.121212 0.848485 0.000000 0.969697 0.030303 0.000000 0.000000 0.000000 0.272727 0.727273 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGAGAGAG MEME-3 regular expression -------------------------------------------------------------------------------- [GA]GAGAGA[GC] -------------------------------------------------------------------------------- Time 18.01 secs. ******************************************************************************** ******************************************************************************** MOTIF CCHYCTYC MEME-4 width = 8 sites = 21 llr = 186 E-value = 7.9e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCHYCTYC MEME-4 Description -------------------------------------------------------------------------------- Simplified A ::2::::: pos.-specific C aa26a25a probability G ::1::::: matrix T ::44:85: bits 2.3 ** * * 2.1 ** * * 1.9 ** * * 1.6 ** * * Relative 1.4 ** * * Entropy 1.2 ** *** * (12.8 bits) 0.9 ** ***** 0.7 ** ***** 0.5 ** ***** 0.2 ** ***** 0.0 -------- Multilevel CCTCCTTC consensus AT C sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCHYCTYC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrII:10094357-10094437 58 8.86e-06 ACCTCCTTCT CCTCCTCC TTATTTCCTT chrII:5749859-5749939 21 8.86e-06 CTTCTTTTCA CCCCCTCC CCTCCGTTTT chrIII:5546888-5546968 36 2.21e-05 CAACACATCA CCTCCTTC TCAATAATTC chrIII:1222224-1222304 51 2.21e-05 CCATCTCACA CCCCCTTC CAGCCGTCTT chrIII:9472607-9472687 37 2.21e-05 CGCGTACTTT CCTCCTTC ATTTTTGCCA chrIV:4394112-4394192 12 2.21e-05 CCCCGAGCTC CCCCCTTC CCGATCAATC chrII:9116539-9116619 44 2.76e-05 AAATGGttct ccacctcc atctcattct chrIV:4557745-4557825 51 3.12e-05 GCGTCCCCGG CCGCCTCC CACCAAACCG chrI:2791540-2791620 28 3.12e-05 TTTCAACCAC CCGCCTCC CTCCAGTCGT chrIII:9786950-9787030 34 3.93e-05 GTATCATCTG CCACCTTC TGCACTTTTG chrIII:7479099-7479179 1 5.80e-05 . CCCTCTCC CTCTTTTATC chrIV:626338-626418 69 5.80e-05 GTTAGCCACT CCTTCTCC CTAC chrII:10859538-10859618 45 8.39e-05 TGCAAGTATA CCTTCTTC CGAATACCCA chrIV:7326925-7327005 15 8.39e-05 TTCTTTGGTG CCTTCTTC TTCTTAACAA chrI:3533841-3533921 12 8.39e-05 AGCTTAtctg ccttcttc ctatgttaaa chrI:6203865-6203945 9 9.27e-05 AAAAAGCT CCTCCCTC TTTCTGATCA chrV:6476219-6476299 22 1.01e-04 TACCTCTGCA CCATCTCC ATTCAACTCT chrI:4332320-4332400 35 1.10e-04 TCTTTTCTCT CCACCCCC AATTGATTCA chrV:13578812-13578892 27 1.25e-04 GGATGCTTTT CCATCTTC TACAACAACT chrII:6244320-6244400 10 1.42e-04 CACACTTTG CCGCCCTC CCACTATACT chrII:8991754-8991834 68 1.51e-04 GCAGCACCGC CCCTCCCC GCATT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCHYCTYC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:10094357-10094437 8.9e-06 57_[+4]_15 chrII:5749859-5749939 8.9e-06 20_[+4]_52 chrIII:5546888-5546968 2.2e-05 35_[+4]_37 chrIII:1222224-1222304 2.2e-05 50_[+4]_22 chrIII:9472607-9472687 2.2e-05 36_[+4]_36 chrIV:4394112-4394192 2.2e-05 11_[+4]_61 chrII:9116539-9116619 2.8e-05 43_[+4]_29 chrIV:4557745-4557825 3.1e-05 50_[+4]_22 chrI:2791540-2791620 3.1e-05 27_[+4]_45 chrIII:9786950-9787030 3.9e-05 33_[+4]_39 chrIII:7479099-7479179 5.8e-05 [+4]_72 chrIV:626338-626418 5.8e-05 68_[+4]_4 chrII:10859538-10859618 8.4e-05 44_[+4]_28 chrIV:7326925-7327005 8.4e-05 14_[+4]_58 chrI:3533841-3533921 8.4e-05 11_[+4]_61 chrI:6203865-6203945 9.3e-05 8_[+4]_64 chrV:6476219-6476299 0.0001 21_[+4]_51 chrI:4332320-4332400 0.00011 34_[+4]_38 chrV:13578812-13578892 0.00012 26_[+4]_46 chrII:6244320-6244400 0.00014 9_[+4]_63 chrII:8991754-8991834 0.00015 67_[+4]_5 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCHYCTYC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCHYCTYC width=8 seqs=21 chrII:10094357-10094437 ( 58) CCTCCTCC 1 chrII:5749859-5749939 ( 21) CCCCCTCC 1 chrIII:5546888-5546968 ( 36) CCTCCTTC 1 chrIII:1222224-1222304 ( 51) CCCCCTTC 1 chrIII:9472607-9472687 ( 37) CCTCCTTC 1 chrIV:4394112-4394192 ( 12) CCCCCTTC 1 chrII:9116539-9116619 ( 44) CCACCTCC 1 chrIV:4557745-4557825 ( 51) CCGCCTCC 1 chrI:2791540-2791620 ( 28) CCGCCTCC 1 chrIII:9786950-9787030 ( 34) CCACCTTC 1 chrIII:7479099-7479179 ( 1) CCCTCTCC 1 chrIV:626338-626418 ( 69) CCTTCTCC 1 chrII:10859538-10859618 ( 45) CCTTCTTC 1 chrIV:7326925-7327005 ( 15) CCTTCTTC 1 chrI:3533841-3533921 ( 12) CCTTCTTC 1 chrI:6203865-6203945 ( 9) CCTCCCTC 1 chrV:6476219-6476299 ( 22) CCATCTCC 1 chrI:4332320-4332400 ( 35) CCACCCCC 1 chrV:13578812-13578892 ( 27) CCATCTTC 1 chrII:6244320-6244400 ( 10) CCGCCCTC 1 chrII:8991754-8991834 ( 68) CCCTCCCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCHYCTYC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.2675 E= 7.9e+002 -1104 234 -1104 -1104 -1104 234 -1104 -1104 -35 27 -49 36 -1104 165 -1104 36 -1104 234 -1104 -1104 -1104 -5 -1104 145 -1104 127 -1104 82 -1104 234 -1104 -1104 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCHYCTYC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 21 E= 7.9e+002 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.238095 0.238095 0.142857 0.380952 0.000000 0.619048 0.000000 0.380952 0.000000 1.000000 0.000000 0.000000 0.000000 0.190476 0.000000 0.809524 0.000000 0.476190 0.000000 0.523810 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCHYCTYC MEME-4 regular expression -------------------------------------------------------------------------------- CC[TAC][CT]CT[TC]C -------------------------------------------------------------------------------- Time 21.34 secs. ******************************************************************************** ******************************************************************************** MOTIF CCGCCCGT MEME-5 width = 8 sites = 2 llr = 25 E-value = 1.6e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCGCCCGT MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C aa:aaa:: probability G ::a:::a: matrix T :::::::a bits 2.3 ******* 2.1 ******* 1.9 ******* 1.6 ******** Relative 1.4 ******** Entropy 1.2 ******** (18.1 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CCGCCCGT consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGCCCGT MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrI:5290811-5290891 57 3.65e-06 GAACTATAGA CCGCCCGT TTTTGTACAG chrI:7913423-7913503 15 3.65e-06 GTGTTGGGTA CCGCCCGT GAAATAAAAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGCCCGT MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:5290811-5290891 3.7e-06 56_[+5]_16 chrI:7913423-7913503 3.7e-06 14_[+5]_58 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGCCCGT MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCGCCCGT width=8 seqs=2 chrI:5290811-5290891 ( 57) CCGCCCGT 1 chrI:7913423-7913503 ( 15) CCGCCCGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGCCCGT MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 13.1555 E= 1.6e+004 -765 233 -765 -765 -765 233 -765 -765 -765 -765 231 -765 -765 233 -765 -765 -765 233 -765 -765 -765 233 -765 -765 -765 -765 231 -765 -765 -765 -765 175 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGCCCGT MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 1.6e+004 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGCCCGT MEME-5 regular expression -------------------------------------------------------------------------------- CCGCCCGT -------------------------------------------------------------------------------- Time 24.59 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:11438568-11438648 3.67e-02 28_[+1(2.82e-05)]_44 chrIV:11259723-11259803 3.55e-01 80 chrX:3306749-3306829 3.06e-01 80 chrI:4332320-4332400 9.26e-02 80 chrIII:12138385-12138465 8.54e-02 43_[+1(6.61e-05)]_29 chrV:6210113-6210193 6.67e-03 80 chrIV:673476-673556 5.27e-02 50_[+2(1.98e-05)]_22 chrI:7913423-7913503 8.61e-04 14_[+5(3.65e-06)]_25_[+2(4.96e-05)]_\ 25 chrII:2320266-2320346 1.05e-01 80 chrII:5749859-5749939 7.31e-07 20_[+4(8.86e-06)]_27_[+2(1.98e-05)]_\ 17 chrIV:3258693-3258773 6.55e-01 80 chrII:13814068-13814148 2.81e-01 80 chrX:16337597-16337677 3.54e-01 80 chrIV:3819555-3819635 1.00e-01 80 chrX:4928317-4928397 9.11e-01 80 chrX:10529137-10529217 5.96e-01 80 chrIII:3621333-3621413 1.99e-01 80 chrV:6823586-6823666 5.12e-01 80 chrI:7355900-7355980 5.17e-01 80 chrIV:12700364-12700444 1.12e-03 24_[+3(2.32e-05)]_[+3(2.32e-05)]_40 chrX:5013963-5014043 3.75e-03 80 chrV:1464697-1464777 3.63e-01 80 chrII:5806687-5806767 3.34e-03 80 chrV:6676250-6676330 2.75e-01 80 chrI:2962426-2962506 6.75e-03 40_[+3(9.22e-06)]_32 chrX:12243037-12243117 9.72e-04 20_[+1(6.61e-05)]_19_[+3(9.22e-06)]_\ 25 chrIII:5015248-5015328 1.71e-02 80 chrII:10403133-10403213 3.94e-01 80 chrII:76842-76922 1.53e-02 33_[+3(4.60e-05)]_39 chrIII:11193377-11193457 1.22e-01 27_[+1(4.70e-05)]_45 chrX:4749255-4749335 2.44e-02 80 chrX:2018414-2018494 2.90e-02 80 chrIII:3764184-3764264 9.26e-02 80 chrII:11427462-11427542 2.26e-01 80 chrV:6812034-6812114 2.78e-01 80 chrX:14003667-14003747 3.88e-01 80 chrI:2791540-2791620 4.34e-05 4_[+2(4.96e-05)]_15_[+4(3.12e-05)]_\ 45 chrIV:4394112-4394192 2.24e-02 11_[+4(2.21e-05)]_61 chrX:12907657-12907737 1.91e-01 80 chrX:816118-816198 1.45e-01 [+1(4.70e-05)]_72 chrII:12577893-12577973 7.80e-01 80 chrIII:11268688-11268768 7.85e-02 11_[+1(6.61e-05)]_61 chrV:20909937-20910017 8.79e-01 80 chrV:11756002-11756082 1.01e-01 26_[+2(8.92e-05)]_46 chrIII:11195700-11195780 2.05e-02 26_[+3(4.60e-05)]_46 chrIV:11257640-11257720 5.83e-02 80 chrX:3548859-3548939 1.49e-02 4_[+1(6.61e-05)]_68 chrX:637783-637863 3.46e-01 80 chrX:10957400-10957480 7.64e-01 80 chrII:9116539-9116619 3.20e-03 21_[+1(6.61e-05)]_14_[+4(2.76e-05)]_\ 29 chrIV:523763-523843 7.25e-01 80 chrV:19755407-19755487 6.44e-01 80 chrV:9526662-9526742 7.34e-03 71_[+2(8.92e-05)]_1 chrI:5570638-5570718 5.79e-01 80 chrX:9097020-9097100 6.59e-01 80 chrX:17185840-17185920 3.56e-01 80 chrII:10918460-10918540 3.95e-01 80 chrX:14770536-14770616 3.51e-01 80 chrX:7171048-7171128 4.38e-01 80 chrV:6301204-6301284 1.75e-01 80 chrII:7237094-7237174 1.89e-01 80 chrII:7639206-7639286 2.51e-02 37_[+2(1.98e-05)]_35 chrII:10627259-10627339 4.23e-02 80 chrII:8991754-8991834 7.68e-04 80 chrIII:3281998-3282078 8.37e-02 80 chrIV:12869544-12869624 4.40e-02 42_[+3(6.41e-05)]_30 chrIII:9592289-9592369 9.50e-01 80 chrV:6292501-6292581 9.62e-01 80 chrIV:4562905-4562985 9.08e-02 [+1(2.82e-05)]_72 chrV:9218819-9218899 2.72e-02 80 chrII:14965051-14965131 8.85e-02 80 chrX:2543491-2543571 3.34e-01 80 chrIII:11241976-11242056 2.94e-01 80 chrI:39009-39089 3.09e-02 14_[+2(8.92e-05)]_58 chrI:3249167-3249247 1.06e-04 12_[+3(3.22e-05)]_60 chrII:7694038-7694118 7.21e-02 80 chrX:11556472-11556552 7.77e-02 46_[+3(9.74e-05)]_26 chrV:16605624-16605704 6.47e-02 21_[+1(6.61e-05)]_51 chrV:4770579-4770659 1.29e-01 10_[+1(2.82e-05)]_62 chrIII:7030212-7030292 6.17e-01 80 chrII:4967831-4967911 7.71e-01 80 chrX:670745-670825 1.45e-02 35_[+1(4.70e-05)]_37 chrII:6178126-6178206 5.14e-02 4_[+1(6.61e-05)]_68 chrX:1117373-1117453 1.89e-01 30_[+2(8.92e-05)]_42 chrV:11007829-11007909 4.09e-04 21_[+3(9.22e-06)]_23_[+1(2.82e-05)]_\ 20 chrX:2906480-2906560 1.32e-02 80 chrX:5669862-5669942 2.02e-02 12_[+3(9.74e-05)]_60 chrX:1541240-1541320 9.57e-02 80 chrI:6203865-6203945 1.05e-02 8_[+4(9.27e-05)]_64 chrV:5647557-5647637 3.65e-02 80 chrIII:13528666-13528746 2.29e-03 29_[+5(1.23e-05)]_43 chrIV:7497371-7497451 4.40e-01 80 chrV:6881872-6881952 9.40e-03 57_[+2(8.92e-05)]_15 chrIV:10439078-10439158 2.48e-02 32_[+2(1.98e-05)]_40 chrII:10221779-10221859 3.42e-01 80 chrIV:10420543-10420623 2.15e-01 25_[+1(6.61e-05)]_47 chrIV:626338-626418 5.04e-02 68_[+4(5.80e-05)]_4 chrII:9797828-9797908 3.12e-01 80 chrIII:9472607-9472687 2.27e-02 36_[+4(2.21e-05)]_36 chrIII:1222224-1222304 1.84e-04 50_[+4(2.21e-05)]_22 chrII:9166180-9166260 6.05e-01 80 chrIV:9160045-9160125 5.93e-02 80 chrI:10586819-10586899 1.08e-01 11_[+2(1.98e-05)]_61 chrII:6377711-6377791 7.48e-02 57_[+2(8.92e-05)]_15 chrV:12298349-12298429 6.46e-01 80 chrX:4672001-4672081 3.58e-01 80 chrII:9325716-9325796 1.31e-01 80 chrI:3533841-3533921 1.40e-03 11_[+4(8.39e-05)]_47_[+3(2.32e-05)]_\ 6 chrX:10748306-10748386 5.95e-02 80 chrV:13421870-13421950 1.21e-02 3_[+1(4.70e-05)]_69 chrV:13577639-13577719 9.35e-01 80 chrX:5346424-5346504 2.19e-01 80 chrII:13715912-13715992 4.37e-02 80 chrX:9568741-9568821 6.18e-01 80 chrIII:5546888-5546968 3.79e-03 35_[+4(2.21e-05)]_9_[+1(4.70e-05)]_\ 20 chrIV:7326925-7327005 8.23e-03 14_[+4(8.39e-05)]_12_[+1(2.82e-05)]_\ 38 chrX:7559081-7559161 4.58e-01 80 chrIV:4605729-4605809 4.34e-01 80 chrIV:12835495-12835575 7.18e-01 80 chrII:4194281-4194361 9.39e-04 33_[+2(8.92e-05)]_39 chrX:6924608-6924688 3.03e-01 80 chrIII:956135-956215 2.37e-01 80 chrIV:4285172-4285252 4.36e-01 80 chrII:1386633-1386713 4.23e-01 80 chrX:11925355-11925435 2.23e-01 64_[+2(8.92e-05)]_8 chrX:11499930-11500010 5.54e-02 13_[+2(4.96e-05)]_59 chrII:10861011-10861091 1.11e-02 20_[+3(2.32e-05)]_22_[+2(8.92e-05)]_\ 22 chrV:19405591-19405671 6.86e-01 80 chrX:11252100-11252180 8.59e-03 62_[+2(1.98e-05)]_10 chrX:17195220-17195300 4.13e-02 66_[+2(1.98e-05)]_6 chrX:6463194-6463274 7.09e-01 80 chrX:3611366-3611446 4.15e-02 56_[+1(6.61e-05)]_16 chrV:6476219-6476299 2.66e-03 80 chrX:15089293-15089373 4.63e-01 80 chrII:10094357-10094437 1.07e-03 18_[+2(1.98e-05)]_22_[+4(2.21e-05)]_\ 1_[+4(8.86e-06)]_15 chrV:10404860-10404940 6.91e-02 80 chrIV:9537663-9537743 2.41e-01 80 chrV:12933793-12933873 3.49e-02 34_[+1(2.82e-05)]_38 chrI:5885368-5885448 8.20e-01 80 chrI:8876170-8876250 2.87e-01 80 chrII:8867021-8867101 3.47e-01 37_[+2(8.92e-05)]_35 chrIV:6275969-6276049 7.41e-02 32_[+1(2.82e-05)]_40 chrV:5510151-5510231 6.07e-01 80 chrIV:5614778-5614858 9.52e-01 80 chrIII:9786950-9787030 4.47e-03 12_[+1(4.70e-05)]_13_[+4(3.93e-05)]_\ 39 chrIV:7237937-7238017 1.42e-01 62_[+2(1.98e-05)]_10 chrX:15944359-15944439 8.31e-01 80 chrIV:4557745-4557825 9.61e-03 50_[+4(3.12e-05)]_22 chrII:4715829-4715909 3.34e-01 80 chrIV:189242-189322 4.75e-01 80 chrV:2765212-2765292 4.38e-01 80 chrII:6244320-6244400 3.28e-04 80 chrV:11859608-11859688 8.88e-02 19_[+2(8.92e-05)]_53 chrV:8460477-8460557 3.57e-01 80 chrIV:10467509-10467589 5.53e-01 80 chrX:11509695-11509775 6.87e-02 80 chrX:16487424-16487504 2.69e-02 61_[+1(2.82e-05)]_11 chrX:14969766-14969846 4.60e-01 80 chrII:4469231-4469311 1.30e-01 40_[+3(7.77e-05)]_11_[+3(3.22e-05)]_\ 13 chrII:5751513-5751593 2.69e-03 80 chrIII:5916109-5916189 4.54e-05 15_[+3(2.32e-05)]_15_[+1(2.82e-05)]_\ 9_[+2(4.96e-05)]_17 chrI:12505969-12506049 5.85e-02 33_[+1(4.70e-05)]_39 chrI:1017468-1017548 1.59e-02 16_[+1(2.82e-05)]_56 chrX:2411113-2411193 9.60e-01 80 chrX:4862221-4862301 5.04e-01 80 chrX:11264889-11264969 2.65e-02 80 chrIV:4148019-4148099 6.60e-02 80 chrIII:4906537-4906617 8.70e-04 5_[+1(2.82e-05)]_67 chrX:10527552-10527632 7.97e-01 80 chrX:7812047-7812127 1.45e-01 9_[+1(4.70e-05)]_63 chrX:7296452-7296532 1.42e-01 80 chrX:13947384-13947464 4.52e-02 80 chrI:10382037-10382117 1.45e-02 16_[+2(4.96e-05)]_56 chrX:7902011-7902091 3.05e-01 10_[+2(8.92e-05)]_62 chrV:13578812-13578892 4.33e-02 80 chrV:449852-449932 2.04e-01 12_[+1(4.70e-05)]_60 chrI:12504962-12505042 1.12e-01 60_[+2(8.92e-05)]_12 chrIII:4468530-4468610 2.72e-01 80 chrIII:4918448-4918528 2.09e-02 80 chrX:5400666-5400746 3.46e-01 80 chrX:14769186-14769266 2.16e-01 27_[+2(4.96e-05)]_45 chrX:4971107-4971187 2.15e-02 39_[+3(5.50e-05)]_33 chrV:12245492-12245572 9.67e-01 80 chrI:4480979-4481059 2.38e-02 80 chrIV:6048639-6048719 1.95e-01 37_[+1(2.82e-05)]_35 chrII:1871006-1871086 5.13e-01 80 chrIV:8174935-8175015 8.21e-01 80 chrX:9266704-9266784 1.93e-01 80 chrII:10653739-10653819 5.91e-02 23_[+2(8.92e-05)]_49 chrI:11997994-11998074 2.79e-01 80 chrIV:12382998-12383078 1.77e-01 39_[+2(1.98e-05)]_33 chrII:12816784-12816864 5.37e-04 9_[+2(1.98e-05)]_12_[+3(4.60e-05)]_\ 43 chrIV:187508-187588 6.92e-01 80 chrI:4314485-4314565 2.19e-02 28_[+1(4.70e-05)]_44 chrIII:11046726-11046806 5.59e-02 80 chrIV:10388436-10388516 7.68e-03 51_[+2(4.96e-05)]_21 chrX:3564080-3564160 8.99e-02 14_[+1(6.61e-05)]_58 chrIII:891182-891262 1.27e-01 7_[+3(3.22e-05)]_65 chrX:13334006-13334086 1.49e-01 34_[+2(8.92e-05)]_38 chrI:14051112-14051192 3.46e-02 28_[+2(8.92e-05)]_6_[+2(4.96e-05)]_\ 30 chrIV:1379093-1379173 2.47e-03 56_[+2(8.92e-05)]_16 chrX:3556062-3556142 3.94e-02 80 chrII:4598967-4599047 3.34e-02 14_[+2(1.98e-05)]_58 chrV:8427245-8427325 1.46e-02 19_[+1(2.82e-05)]_53 chrV:12741844-12741924 1.60e-02 80 chrX:17197979-17198059 1.40e-01 67_[+1(2.82e-05)]_5 chrIV:8475418-8475498 7.30e-04 43_[+2(8.92e-05)]_29 chrIV:8030256-8030336 1.63e-01 80 chrX:17534262-17534342 8.96e-01 80 chrII:6469505-6469585 4.81e-01 80 chrV:331416-331496 7.62e-03 70_[+3(9.22e-06)]_2 chrIII:7315289-7315369 3.87e-01 80 chrII:1159830-1159910 6.94e-01 80 chrIV:17342360-17342440 6.48e-02 70_[+1(2.82e-05)]_2 chrX:5813277-5813357 1.62e-02 80 chrI:5290811-5290891 6.75e-05 36_[+3(5.50e-05)]_12_[+5(3.65e-06)]_\ 16 chrX:6169421-6169501 1.33e-01 80 chrIV:10970484-10970564 1.88e-01 64_[+1(4.70e-05)]_8 chrV:7888214-7888294 2.94e-01 80 chrII:8032798-8032878 2.39e-01 80 chrV:6409006-6409086 1.81e-02 11_[+2(4.96e-05)]_61 chrII:9093047-9093127 3.19e-01 80 chrX:11105362-11105442 1.36e-01 16_[+2(4.96e-05)]_56 chrX:13421221-13421301 9.44e-02 68_[+2(4.96e-05)]_4 chrII:2323271-2323351 7.86e-02 69_[+1(2.82e-05)]_3 chrV:9679318-9679398 7.13e-01 80 chrV:10484129-10484209 4.47e-01 80 chrX:10340195-10340275 1.29e-01 80 chrII:12904315-12904395 1.21e-02 80 chrX:9850367-9850447 1.40e-02 29_[+1(2.82e-05)]_43 chrV:7075823-7075903 9.24e-03 61_[+2(1.98e-05)]_11 chrII:10859538-10859618 1.31e-02 19_[+2(8.92e-05)]_17_[+4(8.39e-05)]_\ 28 chrX:7727766-7727846 1.06e-01 28_[+1(4.70e-05)]_44 chrX:7998160-7998240 5.31e-02 15_[+3(7.77e-05)]_57 chrIII:7479099-7479179 1.33e-03 [+4(5.80e-05)]_72 chrX:13342030-13342110 3.80e-02 70_[+1(2.82e-05)]_2 chrI:6389778-6389858 4.48e-01 80 chrIII:12307650-12307730 9.13e-01 80 chrIII:6693423-6693503 6.32e-03 47_[+3(7.77e-05)]_25 chrX:8074721-8074801 5.26e-02 80 chrIV:12910015-12910095 1.06e-01 80 chrIV:15849848-15849928 1.99e-02 68_[+2(1.98e-05)]_4 chrI:10833512-10833592 4.69e-02 2_[+2(4.96e-05)]_70 chrIII:5964418-5964498 7.16e-01 80 chrIV:552063-552143 8.84e-02 80 chrV:4737883-4737963 1.04e-02 25_[+1(2.82e-05)]_47 chrV:12021104-12021184 3.96e-02 80 chrX:4567280-4567360 9.93e-01 80 chrX:13257684-13257764 5.75e-01 80 chrIV:6017852-6017932 7.24e-03 1_[+1(2.82e-05)]_71 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n07.farnam.hpc.yale.internal ********************************************************************************