******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/worm/fasta/RankLinear2.0_40/nhr-77.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrV:777456-777536 1.0000 80 chrI:7596675-7596755 1.0000 80 chrX:2241454-2241534 1.0000 80 chrV:13416234-13416314 1.0000 80 chrV:8671745-8671825 1.0000 80 chrII:13829220-13829300 1.0000 80 chrV:10546889-10546969 1.0000 80 chrII:13516684-13516764 1.0000 80 chrV:1629461-1629541 1.0000 80 chrX:15983415-15983495 1.0000 80 chrX:4208647-4208727 1.0000 80 chrI:6838171-6838251 1.0000 80 chrII:13853024-13853104 1.0000 80 chrX:11924328-11924408 1.0000 80 chrII:5320330-5320410 1.0000 80 chrX:17181380-17181460 1.0000 80 chrIII:5714871-5714951 1.0000 80 chrX:8473589-8473669 1.0000 80 chrII:3244810-3244890 1.0000 80 chrII:6252642-6252722 1.0000 80 chrIV:4236917-4236997 1.0000 80 chrII:13834972-13835052 1.0000 80 chrIII:6373767-6373847 1.0000 80 chrIV:8826195-8826275 1.0000 80 chrII:11336538-11336618 1.0000 80 chrII:11150102-11150182 1.0000 80 chrIV:4014730-4014810 1.0000 80 chrV:8267497-8267577 1.0000 80 chrII:13780925-13781005 1.0000 80 chrIII:12599134-12599214 1.0000 80 chrX:15736665-15736745 1.0000 80 chrIII:9509869-9509949 1.0000 80 chrIII:9710297-9710377 1.0000 80 chrX:6820338-6820418 1.0000 80 chrII:6587386-6587466 1.0000 80 chrV:6424089-6424169 1.0000 80 chrIII:11694554-11694634 1.0000 80 chrIII:9060365-9060445 1.0000 80 chrV:13411808-13411888 1.0000 80 chrV:8247781-8247861 1.0000 80 chrII:13829419-13829499 1.0000 80 chrII:13824416-13824496 1.0000 80 chrII:5599858-5599938 1.0000 80 chrV:1627435-1627515 1.0000 80 chrII:14142381-14142461 1.0000 80 chrX:14813530-14813610 1.0000 80 chrIII:600718-600798 1.0000 80 chrV:5667485-5667565 1.0000 80 chrIII:3869536-3869616 1.0000 80 chrX:7181752-7181832 1.0000 80 chrI:8245444-8245524 1.0000 80 chrX:14506060-14506140 1.0000 80 chrX:15842527-15842607 1.0000 80 chrV:6098921-6099001 1.0000 80 chrI:9167031-9167111 1.0000 80 chrV:14354492-14354572 1.0000 80 chrII:11637507-11637587 1.0000 80 chrIII:5953519-5953599 1.0000 80 chrI:2068804-2068884 1.0000 80 chrX:6088940-6089020 1.0000 80 chrIV:1711370-1711450 1.0000 80 chrIII:4796191-4796271 1.0000 80 chrI:10402953-10403033 1.0000 80 chrIV:11037489-11037569 1.0000 80 chrX:11522256-11522336 1.0000 80 chrII:10000337-10000417 1.0000 80 chrX:12872440-12872520 1.0000 80 chrX:11603570-11603650 1.0000 80 chrII:7945308-7945388 1.0000 80 chrX:1909522-1909602 1.0000 80 chrV:19049375-19049455 1.0000 80 chrII:13460863-13460943 1.0000 80 chrIII:7941015-7941095 1.0000 80 chrV:6400892-6400972 1.0000 80 chrIV:13388869-13388949 1.0000 80 chrII:5036429-5036509 1.0000 80 chrV:773407-773487 1.0000 80 chrIII:7141456-7141536 1.0000 80 chrI:14855838-14855918 1.0000 80 chrX:4469466-4469546 1.0000 80 chrV:14468688-14468768 1.0000 80 chrII:14798214-14798294 1.0000 80 chrII:15010575-15010655 1.0000 80 chrI:3032923-3033003 1.0000 80 chrX:13514552-13514632 1.0000 80 chrIII:11463901-11463981 1.0000 80 chrIV:15039664-15039744 1.0000 80 chrIV:5209548-5209628 1.0000 80 chrX:4395604-4395684 1.0000 80 chrI:2929683-2929763 1.0000 80 chrIII:11110937-11111017 1.0000 80 chrIII:9406742-9406822 1.0000 80 chrI:6314873-6314953 1.0000 80 chrIV:292465-292545 1.0000 80 chrV:14193542-14193622 1.0000 80 chrX:15279490-15279570 1.0000 80 chrII:13872649-13872729 1.0000 80 chrV:12003886-12003966 1.0000 80 chrIV:4748747-4748827 1.0000 80 chrX:8608801-8608881 1.0000 80 chrIII:3502645-3502725 1.0000 80 chrIV:5374356-5374436 1.0000 80 chrII:4866310-4866390 1.0000 80 chrV:11177052-11177132 1.0000 80 chrX:2364858-2364938 1.0000 80 chrIV:11601808-11601888 1.0000 80 chrII:14651925-14652005 1.0000 80 chrV:3644467-3644547 1.0000 80 chrV:8384335-8384415 1.0000 80 chrX:17544555-17544635 1.0000 80 chrIII:8864797-8864877 1.0000 80 chrIII:9783284-9783364 1.0000 80 chrIV:7103460-7103540 1.0000 80 chrII:1820106-1820186 1.0000 80 chrIII:7571686-7571766 1.0000 80 chrIII:9781872-9781952 1.0000 80 chrII:7631256-7631336 1.0000 80 chrIV:866991-867071 1.0000 80 chrV:11585173-11585253 1.0000 80 chrX:785538-785618 1.0000 80 chrII:5701710-5701790 1.0000 80 chrIII:6006519-6006599 1.0000 80 chrI:6498623-6498703 1.0000 80 chrII:1323696-1323776 1.0000 80 chrIII:10844985-10845065 1.0000 80 chrX:4526663-4526743 1.0000 80 chrV:7858045-7858125 1.0000 80 chrII:3245018-3245098 1.0000 80 chrIII:7278618-7278698 1.0000 80 chrX:15610709-15610789 1.0000 80 chrIII:835722-835802 1.0000 80 chrI:2689067-2689147 1.0000 80 chrI:7595650-7595730 1.0000 80 chrII:14488881-14488961 1.0000 80 chrII:13888420-13888500 1.0000 80 chrII:5605573-5605653 1.0000 80 chrII:9892557-9892637 1.0000 80 chrV:9085715-9085795 1.0000 80 chrV:14028325-14028405 1.0000 80 chrV:724070-724150 1.0000 80 chrIV:6792615-6792695 1.0000 80 chrII:11167280-11167360 1.0000 80 chrX:7341077-7341157 1.0000 80 chrX:15607629-15607709 1.0000 80 chrII:5330277-5330357 1.0000 80 chrIII:4195482-4195562 1.0000 80 chrX:1389525-1389605 1.0000 80 chrII:8790026-8790106 1.0000 80 chrIV:4799211-4799291 1.0000 80 chrX:16271357-16271437 1.0000 80 chrIII:3068070-3068150 1.0000 80 chrIII:10096609-10096689 1.0000 80 chrIII:13464589-13464669 1.0000 80 chrII:14405339-14405419 1.0000 80 chrIV:5754132-5754212 1.0000 80 chrIV:6839153-6839233 1.0000 80 chrI:5431431-5431511 1.0000 80 chrV:14347384-14347464 1.0000 80 chrIV:8527740-8527820 1.0000 80 chrIII:12841512-12841592 1.0000 80 chrV:5576178-5576258 1.0000 80 chrIV:443806-443886 1.0000 80 chrIV:6790578-6790658 1.0000 80 chrX:6792727-6792807 1.0000 80 chrIV:1070540-1070620 1.0000 80 chrII:156112-156192 1.0000 80 chrIV:1709920-1710000 1.0000 80 chrII:14155885-14155965 1.0000 80 chrX:12393980-12394060 1.0000 80 chrIV:12724820-12724900 1.0000 80 chrII:9619606-9619686 1.0000 80 chrI:2069439-2069519 1.0000 80 chrIII:3249181-3249261 1.0000 80 chrX:8475282-8475362 1.0000 80 chrIV:11566283-11566363 1.0000 80 chrX:6254248-6254328 1.0000 80 chrII:11345724-11345804 1.0000 80 chrIII:9717399-9717479 1.0000 80 chrII:11874775-11874855 1.0000 80 chrI:9057819-9057899 1.0000 80 chrII:11974805-11974885 1.0000 80 chrX:14560327-14560407 1.0000 80 chrV:15766364-15766444 1.0000 80 chrII:12006822-12006902 1.0000 80 chrV:7776240-7776320 1.0000 80 chrII:6822546-6822626 1.0000 80 chrX:8019854-8019934 1.0000 80 chrII:11728697-11728777 1.0000 80 chrIV:13393285-13393365 1.0000 80 chrII:9787480-9787560 1.0000 80 chrIII:5230524-5230604 1.0000 80 chrIV:2390341-2390421 1.0000 80 chrIII:131791-131871 1.0000 80 chrV:11175704-11175784 1.0000 80 chrI:3987302-3987382 1.0000 80 chrX:535868-535948 1.0000 80 chrIII:13061261-13061341 1.0000 80 chrIV:8687972-8688052 1.0000 80 chrX:8969636-8969716 1.0000 80 chrV:13081375-13081455 1.0000 80 chrV:9731480-9731560 1.0000 80 chrV:2638661-2638741 1.0000 80 chrV:11572993-11573073 1.0000 80 chrII:14617047-14617127 1.0000 80 chrII:14018239-14018319 1.0000 80 chrX:7068516-7068596 1.0000 80 chrII:24587-24667 1.0000 80 chrII:9112999-9113079 1.0000 80 chrIII:7153936-7154016 1.0000 80 chrIII:8125336-8125416 1.0000 80 chrIII:4004325-4004405 1.0000 80 chrI:7021412-7021492 1.0000 80 chrX:11207118-11207198 1.0000 80 chrIV:14464241-14464321 1.0000 80 chrIV:12372014-12372094 1.0000 80 chrI:9343862-9343942 1.0000 80 chrII:14598543-14598623 1.0000 80 chrV:5684716-5684796 1.0000 80 chrII:14349691-14349771 1.0000 80 chrIII:11066904-11066984 1.0000 80 chrV:6656908-6656988 1.0000 80 chrI:4584790-4584870 1.0000 80 chrII:4044533-4044613 1.0000 80 chrI:11934294-11934374 1.0000 80 chrI:397962-398042 1.0000 80 chrIII:12583663-12583743 1.0000 80 chrII:13908798-13908878 1.0000 80 chrIV:15471569-15471649 1.0000 80 chrI:5429882-5429962 1.0000 80 chrI:13514329-13514409 1.0000 80 chrIV:10374060-10374140 1.0000 80 chrIII:1080698-1080778 1.0000 80 chrII:6968288-6968368 1.0000 80 chrII:15263271-15263351 1.0000 80 chrV:6000417-6000497 1.0000 80 chrII:11980281-11980361 1.0000 80 chrII:11635935-11636015 1.0000 80 chrIV:8428504-8428584 1.0000 80 chrI:15034024-15034104 1.0000 80 chrIII:9780738-9780818 1.0000 80 chrI:3516375-3516455 1.0000 80 chrIV:14767877-14767957 1.0000 80 chrII:14795063-14795143 1.0000 80 chrII:1246983-1247063 1.0000 80 chrX:16206012-16206092 1.0000 80 chrII:14059938-14060018 1.0000 80 chrIII:1202332-1202412 1.0000 80 chrII:13199796-13199876 1.0000 80 chrII:8969453-8969533 1.0000 80 chrI:8426863-8426943 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/worm/inference_raw/MEME/RankLinear2.0_40_nhr-77/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/worm/fasta/RankLinear2.0_40/nhr-77.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.291 C 0.208 G 0.203 T 0.297 Background letter frequencies (from file dataset with add-one prior applied): A 0.291 C 0.208 G 0.203 T 0.297 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GWGAGMGA MEME-1 width = 8 sites = 29 llr = 259 E-value = 2.4e-005 ******************************************************************************** -------------------------------------------------------------------------------- Motif GWGAGMGA MEME-1 Description -------------------------------------------------------------------------------- Simplified A :7:8:5:7 pos.-specific C :::2:4:3 probability G a:a:a:a: matrix T :3:::1:: bits 2.3 * * * * 2.1 * * * * 1.8 * * * * 1.6 * * * * Relative 1.4 * * * * Entropy 1.1 * *** ** (12.9 bits) 0.9 ***** ** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GAGAGAGA consensus T C C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GWGAGMGA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIII:1080698-1080778 23 8.70e-06 TTTCGGAAAA GAGAGCGA TGGAGCGCAC chrV:1629461-1629541 37 8.70e-06 TAGATGCCTA GAGAGCGA GAAGAAACGA chrIII:12583663-12583743 66 2.09e-05 GGGAATCACA GAGAGAGA CACAGAC chrX:535868-535948 7 2.09e-05 GCGGGA GAGAGAGA CAGAAGGGCA chrII:11728697-11728777 48 2.09e-05 tttttGCTGA GAGAGAGA GAAAAGCAAC chrIV:6790578-6790658 64 2.09e-05 CACGAATGGT GAGAGAGA ATTGGCCTC chrII:14405339-14405419 53 2.09e-05 GCGTAGAAAC GAGAGAGA CGCGGAAAGA chrX:16271357-16271437 49 2.09e-05 TATATGTTCA GAGAGAGA AGTCAAAGTG chrV:1627435-1627515 66 2.09e-05 GGGGGGTGAa gagagaga gacggag chrII:13199796-13199876 47 3.60e-05 TTTTGTCCAG GAGAGCGC GTTTTCCTCG chrIII:13061261-13061341 6 3.60e-05 AGACA GAGAGCGC ATTAAGAGGT chrI:8426863-8426943 4 5.71e-05 AAC GAGAGAGC ACACATTTTG chrII:14598543-14598623 72 5.71e-05 ACAGACAGTT GTGAGAGA G chrIV:1070540-1070620 57 5.71e-05 GAAGAGACTG GTGAGAGA ACGGGACGGA chrIII:12841512-12841592 28 5.71e-05 GAGAAAAAGA GTGAGAGA GTATTAGAGA chrX:1389525-1389605 5 5.71e-05 TCAT GTGAGAGA CTTTATTATA chrII:13872649-13872729 7 5.71e-05 AAAAGC GAGAGAGC ACACAAAACG chrIII:4796191-4796271 1 5.71e-05 . GTGAGAGA ACACACGGCG chrI:3516375-3516455 48 6.33e-05 TTGTGCGGTA GAGCGCGA ATGCGTTTCT chrII:12006822-12006902 58 6.33e-05 TGTCGCGATG GAGCGCGA TTGCGCGGGC chrI:9343862-9343942 42 7.84e-05 ACACCTGGGG GTGAGCGC CGCGCCGAAG chrIV:443806-443886 50 7.84e-05 GACACGAAAA GTGAGCGC CGCAAACGCG chrIV:5754132-5754212 22 7.84e-05 GCAGGCATGC GAGCGAGA TACTGGGACG chrV:5667485-5667565 14 7.84e-05 GGATGTTTGC GTGAGCGC CAAAACTTTT chrII:15263271-15263351 71 9.97e-05 GCTGGCTGga gagagtga aa chrV:14468688-14468768 63 9.97e-05 GGCGGGTGGT GAGAGTGA TGTACTGGTC chrII:156112-156192 59 1.11e-04 ACGGTGCAAA GTGCGCGA AAATTAAATG chrII:15010575-15010655 55 1.11e-04 TGTCTCACTA GAGCGCGC TTGCGCGCAC chrV:3644467-3644547 34 1.47e-04 CCTTGTGTGT GTGAGTGA CGTCATTTTA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GWGAGMGA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:1080698-1080778 8.7e-06 22_[+1]_50 chrV:1629461-1629541 8.7e-06 36_[+1]_36 chrIII:12583663-12583743 2.1e-05 65_[+1]_7 chrX:535868-535948 2.1e-05 6_[+1]_66 chrII:11728697-11728777 2.1e-05 47_[+1]_25 chrIV:6790578-6790658 2.1e-05 63_[+1]_9 chrII:14405339-14405419 2.1e-05 52_[+1]_20 chrX:16271357-16271437 2.1e-05 48_[+1]_24 chrV:1627435-1627515 2.1e-05 65_[+1]_7 chrII:13199796-13199876 3.6e-05 46_[+1]_26 chrIII:13061261-13061341 3.6e-05 5_[+1]_67 chrI:8426863-8426943 5.7e-05 3_[+1]_69 chrII:14598543-14598623 5.7e-05 71_[+1]_1 chrIV:1070540-1070620 5.7e-05 56_[+1]_16 chrIII:12841512-12841592 5.7e-05 27_[+1]_45 chrX:1389525-1389605 5.7e-05 4_[+1]_68 chrII:13872649-13872729 5.7e-05 6_[+1]_66 chrIII:4796191-4796271 5.7e-05 [+1]_72 chrI:3516375-3516455 6.3e-05 47_[+1]_25 chrII:12006822-12006902 6.3e-05 57_[+1]_15 chrI:9343862-9343942 7.8e-05 41_[+1]_31 chrIV:443806-443886 7.8e-05 49_[+1]_23 chrIV:5754132-5754212 7.8e-05 21_[+1]_51 chrV:5667485-5667565 7.8e-05 13_[+1]_59 chrII:15263271-15263351 0.0001 70_[+1]_2 chrV:14468688-14468768 0.0001 62_[+1]_10 chrII:156112-156192 0.00011 58_[+1]_14 chrII:15010575-15010655 0.00011 54_[+1]_18 chrV:3644467-3644547 0.00015 33_[+1]_39 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GWGAGMGA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GWGAGMGA width=8 seqs=29 chrIII:1080698-1080778 ( 23) GAGAGCGA 1 chrV:1629461-1629541 ( 37) GAGAGCGA 1 chrIII:12583663-12583743 ( 66) GAGAGAGA 1 chrX:535868-535948 ( 7) GAGAGAGA 1 chrII:11728697-11728777 ( 48) GAGAGAGA 1 chrIV:6790578-6790658 ( 64) GAGAGAGA 1 chrII:14405339-14405419 ( 53) GAGAGAGA 1 chrX:16271357-16271437 ( 49) GAGAGAGA 1 chrV:1627435-1627515 ( 66) GAGAGAGA 1 chrII:13199796-13199876 ( 47) GAGAGCGC 1 chrIII:13061261-13061341 ( 6) GAGAGCGC 1 chrI:8426863-8426943 ( 4) GAGAGAGC 1 chrII:14598543-14598623 ( 72) GTGAGAGA 1 chrIV:1070540-1070620 ( 57) GTGAGAGA 1 chrIII:12841512-12841592 ( 28) GTGAGAGA 1 chrX:1389525-1389605 ( 5) GTGAGAGA 1 chrII:13872649-13872729 ( 7) GAGAGAGC 1 chrIII:4796191-4796271 ( 1) GTGAGAGA 1 chrI:3516375-3516455 ( 48) GAGCGCGA 1 chrII:12006822-12006902 ( 58) GAGCGCGA 1 chrI:9343862-9343942 ( 42) GTGAGCGC 1 chrIV:443806-443886 ( 50) GTGAGCGC 1 chrIV:5754132-5754212 ( 22) GAGCGAGA 1 chrV:5667485-5667565 ( 14) GTGAGCGC 1 chrII:15263271-15263351 ( 71) GAGAGTGA 1 chrV:14468688-14468768 ( 63) GAGAGTGA 1 chrII:156112-156192 ( 59) GTGCGCGA 1 chrII:15010575-15010655 ( 55) GAGCGCGC 1 chrV:3644467-3644547 ( 34) GTGAGTGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GWGAGMGA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.2675 E= 2.4e-005 -1150 -1150 230 -1150 117 -1150 -1150 21 -1150 -1150 230 -1150 151 -27 -1150 -1150 -1150 -1150 230 -1150 83 86 -1150 -152 -1150 -1150 230 -1150 131 41 -1150 -1150 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GWGAGMGA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 29 E= 2.4e-005 0.000000 0.000000 1.000000 0.000000 0.655172 0.000000 0.000000 0.344828 0.000000 0.000000 1.000000 0.000000 0.827586 0.172414 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.517241 0.379310 0.000000 0.103448 0.000000 0.000000 1.000000 0.000000 0.724138 0.275862 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GWGAGMGA MEME-1 regular expression -------------------------------------------------------------------------------- G[AT]GAG[AC]G[AC] -------------------------------------------------------------------------------- Time 5.19 secs. ******************************************************************************** ******************************************************************************** MOTIF CTGCGTCT MEME-2 width = 8 sites = 12 llr = 131 E-value = 1.6e-002 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTGCGTCT MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C a::91:a: probability G ::a:9::: matrix T :a:1:a:a bits 2.3 * * * 2.1 * * * 1.8 ******** 1.6 ******** Relative 1.4 ******** Entropy 1.1 ******** (15.8 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CTGCGTCT consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCGTCT MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrI:8426863-8426943 66 9.72e-06 TATTAGGTGC CTGCGTCT CTTCATT chrIV:14767877-14767957 10 9.72e-06 TTGCATACT CTGCGTCT CGTCTTTTTG chrI:13514329-13514409 46 9.72e-06 CGTCAACTCT CTGCGTCT CTACTCTCTA chrX:11207118-11207198 50 9.72e-06 ACACCGATGT CTGCGTCT CTAATGATAT chrII:9112999-9113079 44 9.72e-06 GTTTGTCTAT CTGCGTCT ATGGATGTCA chrII:9787480-9787560 48 9.72e-06 GCTTCTCCTC CTGCGTCT ACAGAATTAA chrIII:11110937-11111017 34 9.72e-06 AAAAGTGACT CTGCGTCT CTCACCTCCA chrX:4469466-4469546 2 9.72e-06 T CTGCGTCT CTTTTCTAAA chrV:773407-773487 11 9.72e-06 ATTATTTTCT CTGCGTCT CTCTCCTTCG chrIII:12599134-12599214 38 9.72e-06 CCTTTCTTCT CTGCGTCT CTCCGATATT chrX:14506060-14506140 69 1.97e-05 TTTTCTCTCA CTGCCTCT CGGT chrIII:7278618-7278698 9 3.35e-05 TTTCGTCT CTGTGTCT ACAACCATGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCGTCT MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:8426863-8426943 9.7e-06 65_[+2]_7 chrIV:14767877-14767957 9.7e-06 9_[+2]_63 chrI:13514329-13514409 9.7e-06 45_[+2]_27 chrX:11207118-11207198 9.7e-06 49_[+2]_23 chrII:9112999-9113079 9.7e-06 43_[+2]_29 chrII:9787480-9787560 9.7e-06 47_[+2]_25 chrIII:11110937-11111017 9.7e-06 33_[+2]_39 chrX:4469466-4469546 9.7e-06 1_[+2]_71 chrV:773407-773487 9.7e-06 10_[+2]_62 chrIII:12599134-12599214 9.7e-06 37_[+2]_35 chrX:14506060-14506140 2e-05 68_[+2]_4 chrIII:7278618-7278698 3.4e-05 8_[+2]_64 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCGTCT MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTGCGTCT width=8 seqs=12 chrI:8426863-8426943 ( 66) CTGCGTCT 1 chrIV:14767877-14767957 ( 10) CTGCGTCT 1 chrI:13514329-13514409 ( 46) CTGCGTCT 1 chrX:11207118-11207198 ( 50) CTGCGTCT 1 chrII:9112999-9113079 ( 44) CTGCGTCT 1 chrII:9787480-9787560 ( 48) CTGCGTCT 1 chrIII:11110937-11111017 ( 34) CTGCGTCT 1 chrX:4469466-4469546 ( 2) CTGCGTCT 1 chrV:773407-773487 ( 11) CTGCGTCT 1 chrIII:12599134-12599214 ( 38) CTGCGTCT 1 chrX:14506060-14506140 ( 69) CTGCCTCT 1 chrIII:7278618-7278698 ( 9) CTGTGTCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCGTCT MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.2284 E= 1.6e-002 -1023 226 -1023 -1023 -1023 -1023 -1023 175 -1023 -1023 230 -1023 -1023 214 -1023 -183 -1023 -132 217 -1023 -1023 -1023 -1023 175 -1023 226 -1023 -1023 -1023 -1023 -1023 175 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCGTCT MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 12 E= 1.6e-002 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.916667 0.000000 0.083333 0.000000 0.083333 0.916667 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCGTCT MEME-2 regular expression -------------------------------------------------------------------------------- CTGCGTCT -------------------------------------------------------------------------------- Time 10.62 secs. ******************************************************************************** ******************************************************************************** MOTIF GAGACGCA MEME-3 width = 8 sites = 18 llr = 173 E-value = 4.7e-002 ******************************************************************************** -------------------------------------------------------------------------------- Motif GAGACGCA MEME-3 Description -------------------------------------------------------------------------------- Simplified A :9:a:::9 pos.-specific C 1:1:91a: probability G 819::9:1 matrix T 1:::1::1 bits 2.3 * 2.1 * * 1.8 ***** 1.6 ****** Relative 1.4 ******* Entropy 1.1 ******** (13.9 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GAGACGCA consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGACGCA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIV:15471569-15471649 44 8.92e-06 TAGAGAGTAC GAGACGCA GAGATCGTTG chrX:535868-535948 66 8.92e-06 GAAAGAACAT GAGACGCA GATAGCT chrII:11874775-11874855 28 8.92e-06 ATTTCCGTAA GAGACGCA GACACAAAAA chrIV:1070540-1070620 1 8.92e-06 . GAGACGCA GAGAGTCGCA chrII:14405339-14405419 31 8.92e-06 GGTAAATCGA GAGACGCA GACGGCGTAG chrIII:10096609-10096689 19 8.92e-06 TAGTCTAGAA GAGACGCA GTGAGAAAAA chrII:13872649-13872729 27 8.92e-06 ACAAAACGAG GAGACGCA GAGTTGGGTC chrV:777456-777536 14 8.92e-06 ATCGCATGAA GAGACGCA GACATAAAAA chrV:5684716-5684796 28 1.81e-05 TCTTCCCTGC GAGACCCA AGGGAGGGGA chrIV:11566283-11566363 73 1.81e-05 AAATCGCTGC GAGACCCA chrI:2069439-2069519 43 3.11e-05 GAGAGCAGCG TAGACGCA AGCCAGTTCT chrX:15279490-15279570 61 3.11e-05 tTTTTCCCCG TAGACGCA CTCAACGCAC chrII:9892557-9892637 47 3.73e-05 AACTGGTTCG GAGACGCG TCGGGGTACG chrIV:5754132-5754212 34 4.35e-05 GCGAGATACT GGGACGCA GACAAATCTA chrV:8671745-8671825 15 5.27e-05 AAATTCCAGA CAGACGCA ATTCCGAATG chrIII:1080698-1080778 4 6.18e-05 CAC GAGACGCT CTTTCGGAAA chrIII:8125336-8125416 47 7.09e-05 GTCGGGCGAG GACACGCA GACACAAAGT chrIII:9406742-9406822 57 8.37e-05 GTAGATTTAC GAGATGCA CGCAATCTGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGACGCA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:15471569-15471649 8.9e-06 43_[+3]_29 chrX:535868-535948 8.9e-06 65_[+3]_7 chrII:11874775-11874855 8.9e-06 27_[+3]_45 chrIV:1070540-1070620 8.9e-06 [+3]_72 chrII:14405339-14405419 8.9e-06 30_[+3]_42 chrIII:10096609-10096689 8.9e-06 18_[+3]_54 chrII:13872649-13872729 8.9e-06 26_[+3]_46 chrV:777456-777536 8.9e-06 13_[+3]_59 chrV:5684716-5684796 1.8e-05 27_[+3]_45 chrIV:11566283-11566363 1.8e-05 72_[+3] chrI:2069439-2069519 3.1e-05 42_[+3]_30 chrX:15279490-15279570 3.1e-05 60_[+3]_12 chrII:9892557-9892637 3.7e-05 46_[+3]_26 chrIV:5754132-5754212 4.4e-05 33_[+3]_39 chrV:8671745-8671825 5.3e-05 14_[+3]_58 chrIII:1080698-1080778 6.2e-05 3_[+3]_69 chrIII:8125336-8125416 7.1e-05 46_[+3]_26 chrIII:9406742-9406822 8.4e-05 56_[+3]_16 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGACGCA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GAGACGCA width=8 seqs=18 chrIV:15471569-15471649 ( 44) GAGACGCA 1 chrX:535868-535948 ( 66) GAGACGCA 1 chrII:11874775-11874855 ( 28) GAGACGCA 1 chrIV:1070540-1070620 ( 1) GAGACGCA 1 chrII:14405339-14405419 ( 31) GAGACGCA 1 chrIII:10096609-10096689 ( 19) GAGACGCA 1 chrII:13872649-13872729 ( 27) GAGACGCA 1 chrV:777456-777536 ( 14) GAGACGCA 1 chrV:5684716-5684796 ( 28) GAGACCCA 1 chrIV:11566283-11566363 ( 73) GAGACCCA 1 chrI:2069439-2069519 ( 43) TAGACGCA 1 chrX:15279490-15279570 ( 61) TAGACGCA 1 chrII:9892557-9892637 ( 47) GAGACGCG 1 chrIV:5754132-5754212 ( 34) GGGACGCA 1 chrV:8671745-8671825 ( 15) CAGACGCA 1 chrIII:1080698-1080778 ( 4) GAGACGCT 1 chrIII:8125336-8125416 ( 47) GACACGCA 1 chrIII:9406742-9406822 ( 57) GAGATGCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGACGCA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.8329 E= 4.7e-002 -1081 -190 204 -142 170 -1081 -187 -1081 -1081 -190 222 -1081 178 -1081 -1081 -1081 -1081 218 -1081 -242 -1081 -91 213 -1081 -1081 226 -1081 -1081 161 -1081 -187 -242 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGACGCA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 18 E= 4.7e-002 0.000000 0.055556 0.833333 0.111111 0.944444 0.000000 0.055556 0.000000 0.000000 0.055556 0.944444 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.944444 0.000000 0.055556 0.000000 0.111111 0.888889 0.000000 0.000000 1.000000 0.000000 0.000000 0.888889 0.000000 0.055556 0.055556 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGACGCA MEME-3 regular expression -------------------------------------------------------------------------------- GAGACGCA -------------------------------------------------------------------------------- Time 15.82 secs. ******************************************************************************** ******************************************************************************** MOTIF GCGCAHTT MEME-4 width = 8 sites = 17 llr = 164 E-value = 1.6e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCGCAHTT MEME-4 Description -------------------------------------------------------------------------------- Simplified A ::::a2:: pos.-specific C :a:a:32: probability G a:a::1:: matrix T :::::48a bits 2.3 **** 2.1 **** 1.8 ***** * 1.6 ***** * Relative 1.4 ***** * Entropy 1.1 ***** ** (13.9 bits) 0.9 ***** ** 0.7 ***** ** 0.5 ***** ** 0.2 ***** ** 0.0 -------- Multilevel GCGCATTT consensus C sequence A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCAHTT MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIII:1202332-1202412 6 9.52e-06 ATGGA GCGCACTT GCAACATGCG chrIII:1080698-1080778 35 9.52e-06 GAGCGATGGA GCGCACTT GCACTTGGCA chrIV:15471569-15471649 62 9.52e-06 GAGATCGTTG GCGCACTT TGTGATTTGT chrII:13834972-13835052 66 9.52e-06 TTTCAATGGA GCGCACTT GCAATAG chrI:5429882-5429962 71 2.31e-05 GTTCAGTAGA GCGCATTT GG chrII:14617047-14617127 54 2.31e-05 GCAGGCGGTA GCGCATTT CGCTGTTGAT chrV:15766364-15766444 27 2.31e-05 GGGGCTGCTG GCGCATTT CCAGTTTTGC chrII:7945308-7945388 53 2.31e-05 AAGTGTCTTT GCGCATTT CTCGTGTAAA chrIV:10374060-10374140 15 3.64e-05 CAAGTTGCTG GCGCAATT CTCGTGCTGA chrIII:4004325-4004405 67 3.64e-05 GCAGCAGCTG GCGCAATT CTCGAC chrIII:3068070-3068150 2 3.64e-05 C GCGCAATT TTAATGCAAG chrIV:7103460-7103540 42 3.64e-05 AAACTTGCTG GCGCAATT CTCGATGTGA chrIII:131791-131871 25 4.57e-05 GTTCACTAGA GCGCAGTT GCACACTTTT chrIII:7941015-7941095 37 4.57e-05 CGCCTCACGC GCGCAGTT TGAATTGAGA chrII:15010575-15010655 67 5.24e-05 GCGCGCTTGC GCGCACCT CTCGTT chrV:6656908-6656988 1 6.19e-05 . GCGCATCT CTATTTCGGG chrII:14349691-14349771 25 6.19e-05 GAGAAAACCT GCGCATCT AACTGTCTTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCAHTT MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:1202332-1202412 9.5e-06 5_[+4]_67 chrIII:1080698-1080778 9.5e-06 34_[+4]_38 chrIV:15471569-15471649 9.5e-06 61_[+4]_11 chrII:13834972-13835052 9.5e-06 65_[+4]_7 chrI:5429882-5429962 2.3e-05 70_[+4]_2 chrII:14617047-14617127 2.3e-05 53_[+4]_19 chrV:15766364-15766444 2.3e-05 26_[+4]_46 chrII:7945308-7945388 2.3e-05 52_[+4]_20 chrIV:10374060-10374140 3.6e-05 14_[+4]_58 chrIII:4004325-4004405 3.6e-05 66_[+4]_6 chrIII:3068070-3068150 3.6e-05 1_[+4]_71 chrIV:7103460-7103540 3.6e-05 41_[+4]_31 chrIII:131791-131871 4.6e-05 24_[+4]_48 chrIII:7941015-7941095 4.6e-05 36_[+4]_36 chrII:15010575-15010655 5.2e-05 66_[+4]_6 chrV:6656908-6656988 6.2e-05 [+4]_72 chrII:14349691-14349771 6.2e-05 24_[+4]_48 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCAHTT MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCGCAHTT width=8 seqs=17 chrIII:1202332-1202412 ( 6) GCGCACTT 1 chrIII:1080698-1080778 ( 35) GCGCACTT 1 chrIV:15471569-15471649 ( 62) GCGCACTT 1 chrII:13834972-13835052 ( 66) GCGCACTT 1 chrI:5429882-5429962 ( 71) GCGCATTT 1 chrII:14617047-14617127 ( 54) GCGCATTT 1 chrV:15766364-15766444 ( 27) GCGCATTT 1 chrII:7945308-7945388 ( 53) GCGCATTT 1 chrIV:10374060-10374140 ( 15) GCGCAATT 1 chrIII:4004325-4004405 ( 67) GCGCAATT 1 chrIII:3068070-3068150 ( 2) GCGCAATT 1 chrIV:7103460-7103540 ( 42) GCGCAATT 1 chrIII:131791-131871 ( 25) GCGCAGTT 1 chrIII:7941015-7941095 ( 37) GCGCAGTT 1 chrII:15010575-15010655 ( 67) GCGCACCT 1 chrV:6656908-6656988 ( 1) GCGCATCT 1 chrII:14349691-14349771 ( 25) GCGCATCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCAHTT MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.1364 E= 1.6e+000 -1073 -1073 230 -1073 -1073 226 -1073 -1073 -1073 -1073 230 -1073 -1073 226 -1073 -1073 178 -1073 -1073 -1073 -31 50 -79 25 -1073 -24 -1073 147 -1073 -1073 -1073 175 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCAHTT MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 17 E= 1.6e+000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.235294 0.294118 0.117647 0.352941 0.000000 0.176471 0.000000 0.823529 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCAHTT MEME-4 regular expression -------------------------------------------------------------------------------- GCGCA[TCA]TT -------------------------------------------------------------------------------- Time 19.45 secs. ******************************************************************************** ******************************************************************************** MOTIF TGCTGGCG MEME-5 width = 8 sites = 10 llr = 102 E-value = 4.6e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGCTGGCG MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::2:2 pos.-specific C ::a:::8: probability G :a::a8:8 matrix T a::a::2: bits 2.3 ** * 2.1 ** * 1.8 ***** 1.6 ***** Relative 1.4 ******** Entropy 1.1 ******** (14.7 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TGCTGGCG consensus ATA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCTGGCG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrV:11175704-11175784 23 6.48e-06 GTACGCAGAG TGCTGGCG GGGCTAGTGT chrV:15766364-15766444 42 6.48e-06 TTTCCAGTTT TGCTGGCG CATATCTCGA chrIV:7103460-7103540 16 6.48e-06 TTTGTCACAC TGCTGGCG CATTCATCAA chrII:7945308-7945388 33 6.48e-06 CAAGGACGCA TGCTGGCG CAAAGTGTCT chrII:11980281-11980361 47 3.43e-05 ACATCTAATT TGCTGGCA GTATGCCAGT chrIV:10374060-10374140 27 3.43e-05 GCAATTCTCG TGCTGACG CTTTTACGAA chrX:11207118-11207198 29 3.43e-05 TCCTATCGCT TGCTGACG TAGACACCGA chrX:7341077-7341157 55 3.43e-05 ATTTATATTT TGCTGGCA AACTATTGCA chrII:11167280-11167360 22 3.43e-05 TCACAACTCT TGCTGGTG ATGGAAGTGG chrV:14354492-14354572 43 3.43e-05 CGGTGTAAGA TGCTGGTG AAAAAGGGAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCTGGCG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:11175704-11175784 6.5e-06 22_[+5]_50 chrV:15766364-15766444 6.5e-06 41_[+5]_31 chrIV:7103460-7103540 6.5e-06 15_[+5]_57 chrII:7945308-7945388 6.5e-06 32_[+5]_40 chrII:11980281-11980361 3.4e-05 46_[+5]_26 chrIV:10374060-10374140 3.4e-05 26_[+5]_46 chrX:11207118-11207198 3.4e-05 28_[+5]_44 chrX:7341077-7341157 3.4e-05 54_[+5]_18 chrII:11167280-11167360 3.4e-05 21_[+5]_51 chrV:14354492-14354572 3.4e-05 42_[+5]_30 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCTGGCG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGCTGGCG width=8 seqs=10 chrV:11175704-11175784 ( 23) TGCTGGCG 1 chrV:15766364-15766444 ( 42) TGCTGGCG 1 chrIV:7103460-7103540 ( 16) TGCTGGCG 1 chrII:7945308-7945388 ( 33) TGCTGGCG 1 chrII:11980281-11980361 ( 47) TGCTGGCA 1 chrIV:10374060-10374140 ( 27) TGCTGACG 1 chrX:11207118-11207198 ( 29) TGCTGACG 1 chrX:7341077-7341157 ( 55) TGCTGGCA 1 chrII:11167280-11167360 ( 22) TGCTGGTG 1 chrV:14354492-14354572 ( 43) TGCTGGTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCTGGCG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.7767 E= 4.6e+003 -997 -997 -997 175 -997 -997 230 -997 -997 226 -997 -997 -997 -997 -997 175 -997 -997 230 -997 -54 -997 198 -997 -997 194 -997 -57 -54 -997 198 -997 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCTGGCG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 10 E= 4.6e+003 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.200000 0.000000 0.800000 0.000000 0.000000 0.800000 0.000000 0.200000 0.200000 0.000000 0.800000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCTGGCG MEME-5 regular expression -------------------------------------------------------------------------------- TGCTG[GA][CT][GA] -------------------------------------------------------------------------------- Time 22.99 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:777456-777536 6.78e-03 13_[+3(8.92e-06)]_59 chrI:7596675-7596755 1.66e-01 80 chrX:2241454-2241534 3.97e-01 80 chrV:13416234-13416314 7.99e-01 80 chrV:8671745-8671825 1.74e-02 14_[+3(5.27e-05)]_58 chrII:13829220-13829300 7.88e-01 80 chrV:10546889-10546969 6.14e-01 80 chrII:13516684-13516764 1.76e-01 80 chrV:1629461-1629541 2.72e-02 36_[+1(8.70e-06)]_36 chrX:15983415-15983495 9.97e-01 80 chrX:4208647-4208727 9.58e-01 80 chrI:6838171-6838251 9.11e-01 80 chrII:13853024-13853104 9.88e-01 80 chrX:11924328-11924408 8.79e-01 80 chrII:5320330-5320410 8.04e-01 80 chrX:17181380-17181460 5.66e-01 80 chrIII:5714871-5714951 9.68e-01 80 chrX:8473589-8473669 5.90e-01 80 chrII:3244810-3244890 9.99e-01 80 chrII:6252642-6252722 9.90e-01 80 chrIV:4236917-4236997 9.00e-01 80 chrII:13834972-13835052 4.97e-03 65_[+4(9.52e-06)]_7 chrIII:6373767-6373847 9.41e-01 80 chrIV:8826195-8826275 7.05e-01 80 chrII:11336538-11336618 9.79e-01 80 chrII:11150102-11150182 4.87e-01 80 chrIV:4014730-4014810 6.57e-01 80 chrV:8267497-8267577 9.78e-01 80 chrII:13780925-13781005 8.96e-01 80 chrIII:12599134-12599214 1.04e-01 37_[+2(9.72e-06)]_35 chrX:15736665-15736745 9.46e-01 80 chrIII:9509869-9509949 3.57e-01 80 chrIII:9710297-9710377 3.94e-01 80 chrX:6820338-6820418 6.27e-01 80 chrII:6587386-6587466 6.20e-01 80 chrV:6424089-6424169 6.67e-01 80 chrIII:11694554-11694634 5.82e-01 80 chrIII:9060365-9060445 8.48e-01 80 chrV:13411808-13411888 6.81e-01 80 chrV:8247781-8247861 7.10e-01 80 chrII:13829419-13829499 9.75e-01 80 chrII:13824416-13824496 9.76e-01 80 chrII:5599858-5599938 9.84e-01 80 chrV:1627435-1627515 9.93e-03 65_[+1(2.09e-05)]_7 chrII:14142381-14142461 7.25e-01 80 chrX:14813530-14813610 5.13e-01 80 chrIII:600718-600798 7.65e-01 80 chrV:5667485-5667565 6.08e-02 13_[+1(7.84e-05)]_59 chrIII:3869536-3869616 6.02e-01 80 chrX:7181752-7181832 5.15e-01 80 chrI:8245444-8245524 9.85e-01 80 chrX:14506060-14506140 1.29e-02 68_[+2(1.97e-05)]_4 chrX:15842527-15842607 5.84e-01 80 chrV:6098921-6099001 8.85e-01 80 chrI:9167031-9167111 9.28e-01 80 chrV:14354492-14354572 4.81e-02 42_[+5(3.43e-05)]_30 chrII:11637507-11637587 9.45e-01 80 chrIII:5953519-5953599 2.67e-01 80 chrI:2068804-2068884 3.67e-01 80 chrX:6088940-6089020 9.55e-01 80 chrIV:1711370-1711450 8.30e-01 80 chrIII:4796191-4796271 7.99e-03 [+1(5.71e-05)]_72 chrI:10402953-10403033 9.90e-01 80 chrIV:11037489-11037569 5.92e-01 80 chrX:11522256-11522336 6.34e-01 80 chrII:10000337-10000417 1.00e+00 80 chrX:12872440-12872520 1.51e-01 80 chrX:11603570-11603650 9.86e-01 80 chrII:7945308-7945388 1.74e-04 32_[+5(6.48e-06)]_12_[+4(2.31e-05)]_\ 20 chrX:1909522-1909602 1.34e-01 80 chrV:19049375-19049455 4.73e-01 80 chrII:13460863-13460943 9.68e-01 80 chrIII:7941015-7941095 3.84e-02 36_[+4(4.57e-05)]_36 chrV:6400892-6400972 1.11e-01 80 chrIV:13388869-13388949 9.81e-01 80 chrII:5036429-5036509 9.39e-01 80 chrV:773407-773487 8.33e-04 10_[+2(9.72e-06)]_62 chrIII:7141456-7141536 4.83e-01 80 chrI:14855838-14855918 7.68e-01 80 chrX:4469466-4469546 2.42e-03 1_[+2(9.72e-06)]_71 chrV:14468688-14468768 1.02e-01 62_[+1(9.97e-05)]_10 chrII:14798214-14798294 9.05e-01 80 chrII:15010575-15010655 4.97e-04 66_[+4(5.24e-05)]_6 chrI:3032923-3033003 2.95e-01 80 chrX:13514552-13514632 4.42e-01 80 chrIII:11463901-11463981 1.55e-01 80 chrIV:15039664-15039744 3.83e-01 80 chrIV:5209548-5209628 5.71e-01 80 chrX:4395604-4395684 3.65e-02 80 chrI:2929683-2929763 2.39e-01 80 chrIII:11110937-11111017 2.33e-02 33_[+2(9.72e-06)]_39 chrIII:9406742-9406822 3.33e-02 56_[+3(8.37e-05)]_16 chrI:6314873-6314953 5.12e-01 80 chrIV:292465-292545 4.26e-02 80 chrV:14193542-14193622 7.75e-02 44_[+2(4.78e-05)]_4_[+2(9.72e-06)]_\ 16 chrX:15279490-15279570 2.38e-02 60_[+3(3.11e-05)]_12 chrII:13872649-13872729 3.38e-04 6_[+1(5.71e-05)]_12_[+3(8.92e-06)]_\ 46 chrV:12003886-12003966 6.83e-01 80 chrIV:4748747-4748827 5.33e-01 80 chrX:8608801-8608881 7.81e-01 80 chrIII:3502645-3502725 9.87e-01 80 chrIV:5374356-5374436 7.96e-01 80 chrII:4866310-4866390 7.14e-01 80 chrV:11177052-11177132 4.52e-01 80 chrX:2364858-2364938 8.57e-01 80 chrIV:11601808-11601888 6.57e-01 80 chrII:14651925-14652005 8.80e-01 80 chrV:3644467-3644547 4.49e-02 80 chrV:8384335-8384415 9.97e-01 80 chrX:17544555-17544635 1.44e-01 80 chrIII:8864797-8864877 9.78e-01 80 chrIII:9783284-9783364 9.89e-01 80 chrIV:7103460-7103540 2.96e-04 15_[+5(6.48e-06)]_13_[+5(6.48e-06)]_\ 36 chrII:1820106-1820186 6.63e-01 80 chrIII:7571686-7571766 5.82e-01 80 chrIII:9781872-9781952 9.86e-01 80 chrII:7631256-7631336 1.09e-01 5_[+2(4.78e-05)]_67 chrIV:866991-867071 9.19e-01 80 chrV:11585173-11585253 3.42e-01 80 chrX:785538-785618 8.88e-01 80 chrII:5701710-5701790 9.68e-01 80 chrIII:6006519-6006599 7.58e-01 80 chrI:6498623-6498703 6.20e-01 80 chrII:1323696-1323776 5.53e-02 80 chrIII:10844985-10845065 1.47e-01 80 chrX:4526663-4526743 9.97e-01 80 chrV:7858045-7858125 4.15e-01 80 chrII:3245018-3245098 8.38e-01 80 chrIII:7278618-7278698 2.74e-02 8_[+2(3.35e-05)]_64 chrX:15610709-15610789 7.34e-01 80 chrIII:835722-835802 9.97e-01 80 chrI:2689067-2689147 1.67e-01 80 chrI:7595650-7595730 1.07e-01 80 chrII:14488881-14488961 9.59e-01 80 chrII:13888420-13888500 5.86e-01 80 chrII:5605573-5605653 9.69e-01 80 chrII:9892557-9892637 7.77e-02 46_[+3(3.73e-05)]_26 chrV:9085715-9085795 5.03e-01 80 chrV:14028325-14028405 7.85e-01 80 chrV:724070-724150 5.21e-01 80 chrIV:6792615-6792695 9.20e-01 80 chrII:11167280-11167360 1.05e-02 21_[+5(3.43e-05)]_51 chrX:7341077-7341157 1.29e-02 54_[+5(3.43e-05)]_18 chrX:15607629-15607709 3.28e-02 20_[+5(7.42e-05)]_52 chrII:5330277-5330357 2.70e-01 50_[+2(4.78e-05)]_12_[+2(4.78e-05)]_\ 2 chrIII:4195482-4195562 8.30e-01 80 chrX:1389525-1389605 2.83e-01 4_[+1(5.71e-05)]_68 chrII:8790026-8790106 2.64e-01 80 chrIV:4799211-4799291 8.49e-01 80 chrX:16271357-16271437 6.87e-03 48_[+1(2.09e-05)]_24 chrIII:3068070-3068150 3.10e-02 1_[+4(3.64e-05)]_71 chrIII:10096609-10096689 2.90e-03 18_[+3(8.92e-06)]_54 chrIII:13464589-13464669 4.16e-01 80 chrII:14405339-14405419 3.66e-04 30_[+3(8.92e-06)]_14_[+1(2.09e-05)]_\ 20 chrIV:5754132-5754212 6.79e-04 21_[+1(7.84e-05)]_4_[+3(4.35e-05)]_\ 39 chrIV:6839153-6839233 5.85e-01 80 chrI:5431431-5431511 2.79e-01 80 chrV:14347384-14347464 8.77e-01 80 chrIV:8527740-8527820 9.40e-01 80 chrIII:12841512-12841592 1.31e-01 27_[+1(5.71e-05)]_45 chrV:5576178-5576258 1.00e+00 80 chrIV:443806-443886 4.81e-02 49_[+1(7.84e-05)]_23 chrIV:6790578-6790658 4.94e-02 63_[+1(2.09e-05)]_9 chrX:6792727-6792807 9.05e-01 80 chrIV:1070540-1070620 1.70e-04 [+3(8.92e-06)]_48_[+1(5.71e-05)]_16 chrII:156112-156192 4.89e-02 80 chrIV:1709920-1710000 3.13e-02 80 chrII:14155885-14155965 9.63e-01 80 chrX:12393980-12394060 8.22e-01 80 chrIV:12724820-12724900 6.10e-01 80 chrII:9619606-9619686 4.54e-01 80 chrI:2069439-2069519 3.83e-03 42_[+3(3.11e-05)]_30 chrIII:3249181-3249261 8.31e-02 49_[+5(7.42e-05)]_23 chrX:8475282-8475362 9.05e-01 80 chrIV:11566283-11566363 8.38e-03 72_[+3(1.81e-05)] chrX:6254248-6254328 8.12e-01 80 chrII:11345724-11345804 5.15e-01 80 chrIII:9717399-9717479 9.29e-01 80 chrII:11874775-11874855 8.23e-03 27_[+3(8.92e-06)]_45 chrI:9057819-9057899 1.00e+00 80 chrII:11974805-11974885 6.18e-01 80 chrX:14560327-14560407 4.99e-01 80 chrV:15766364-15766444 2.48e-05 21_[+5(6.48e-06)]_12_[+5(6.48e-06)]_\ 31 chrII:12006822-12006902 1.18e-02 57_[+1(6.33e-05)]_15 chrV:7776240-7776320 8.14e-01 80 chrII:6822546-6822626 8.92e-01 80 chrX:8019854-8019934 1.44e-02 80 chrII:11728697-11728777 2.62e-03 45_[+1(2.09e-05)]_27 chrIV:13393285-13393365 9.49e-01 80 chrII:9787480-9787560 9.74e-03 47_[+2(9.72e-06)]_25 chrIII:5230524-5230604 2.99e-01 80 chrIV:2390341-2390421 1.27e-01 80 chrIII:131791-131871 1.03e-02 24_[+4(4.57e-05)]_48 chrV:11175704-11175784 1.47e-02 22_[+5(6.48e-06)]_50 chrI:3987302-3987382 4.75e-01 80 chrX:535868-535948 7.00e-04 4_[+1(2.09e-05)]_53_[+3(8.92e-06)]_\ 7 chrIII:13061261-13061341 3.47e-03 5_[+1(3.60e-05)]_67 chrIV:8687972-8688052 9.89e-01 80 chrX:8969636-8969716 8.90e-01 80 chrV:13081375-13081455 9.71e-01 80 chrV:9731480-9731560 3.86e-01 80 chrV:2638661-2638741 4.33e-02 80 chrV:11572993-11573073 2.45e-01 80 chrII:14617047-14617127 6.94e-03 53_[+4(2.31e-05)]_19 chrII:14018239-14018319 9.13e-01 80 chrX:7068516-7068596 1.35e-01 80 chrII:24587-24667 3.00e-02 80 chrII:9112999-9113079 6.21e-02 43_[+2(9.72e-06)]_29 chrIII:7153936-7154016 9.04e-02 80 chrIII:8125336-8125416 6.47e-02 46_[+3(7.09e-05)]_26 chrIII:4004325-4004405 2.79e-03 66_[+4(3.64e-05)]_6 chrI:7021412-7021492 1.41e-01 80 chrX:11207118-11207198 3.80e-04 28_[+5(3.43e-05)]_13_[+2(9.72e-06)]_\ 23 chrIV:14464241-14464321 1.04e-01 80 chrIV:12372014-12372094 9.36e-01 80 chrI:9343862-9343942 6.19e-03 41_[+1(7.84e-05)]_31 chrII:14598543-14598623 6.75e-02 71_[+1(5.71e-05)]_1 chrV:5684716-5684796 5.02e-02 27_[+3(1.81e-05)]_45 chrII:14349691-14349771 3.09e-02 24_[+4(6.19e-05)]_48 chrIII:11066904-11066984 3.79e-01 80 chrV:6656908-6656988 2.16e-01 [+4(6.19e-05)]_72 chrI:4584790-4584870 3.35e-01 80 chrII:4044533-4044613 4.52e-02 80 chrI:11934294-11934374 5.60e-02 30_[+2(9.72e-06)]_16_[+2(4.78e-05)]_\ 18 chrI:397962-398042 2.29e-01 68_[+2(4.78e-05)]_4 chrIII:12583663-12583743 3.24e-02 65_[+1(2.09e-05)]_7 chrII:13908798-13908878 2.50e-01 80 chrIV:15471569-15471649 3.97e-05 43_[+3(8.92e-06)]_10_[+4(9.52e-06)]_\ 11 chrI:5429882-5429962 1.97e-03 70_[+4(2.31e-05)]_2 chrI:13514329-13514409 1.06e-02 45_[+2(9.72e-06)]_27 chrIV:10374060-10374140 3.21e-04 9_[+5(6.48e-06)]_9_[+5(3.43e-05)]_\ 46 chrIII:1080698-1080778 4.24e-06 3_[+3(6.18e-05)]_11_[+1(8.70e-06)]_\ 4_[+4(9.52e-06)]_38 chrII:6968288-6968368 9.92e-01 80 chrII:15263271-15263351 1.06e-01 70_[+1(9.97e-05)]_2 chrV:6000417-6000497 3.20e-01 80 chrII:11980281-11980361 4.20e-02 46_[+5(3.43e-05)]_26 chrII:11635935-11636015 1.72e-01 80 chrIV:8428504-8428584 9.99e-01 80 chrI:15034024-15034104 1.65e-01 80 chrIII:9780738-9780818 3.09e-01 80 chrI:3516375-3516455 5.42e-02 47_[+1(6.33e-05)]_25 chrIV:14767877-14767957 1.84e-03 9_[+2(9.72e-06)]_63 chrII:14795063-14795143 2.81e-01 80 chrII:1246983-1247063 2.23e-01 80 chrX:16206012-16206092 4.17e-01 80 chrII:14059938-14060018 1.72e-01 80 chrIII:1202332-1202412 7.25e-03 5_[+4(9.52e-06)]_67 chrII:13199796-13199876 1.77e-02 46_[+1(3.60e-05)]_26 chrII:8969453-8969533 5.13e-01 80 chrI:8426863-8426943 2.75e-04 3_[+1(5.71e-05)]_54_[+2(9.72e-06)]_\ 7 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n06.farnam.hpc.yale.internal ********************************************************************************