******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/worm/fasta/RankLinear2.0_40/nhr-76.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrIV:626306-626386 1.0000 80 chrIV:11097918-11097998 1.0000 80 chrM:13132-13212 1.0000 80 chrII:9686911-9686991 1.0000 80 chrV:8655223-8655303 1.0000 80 chrM:465-545 1.0000 80 chrIV:629341-629421 1.0000 80 chrX:12425499-12425579 1.0000 80 chrII:11836727-11836807 1.0000 80 chrM:10422-10502 1.0000 80 chrM:7877-7957 1.0000 80 chrM:7669-7749 1.0000 80 chrM:257-337 1.0000 80 chrM:1564-1644 1.0000 80 chrM:8569-8649 1.0000 80 chrI:8869209-8869289 1.0000 80 chrIV:10610080-10610160 1.0000 80 chrM:9677-9757 1.0000 80 chrIV:9376711-9376791 1.0000 80 chrV:1967099-1967179 1.0000 80 chrM:5746-5826 1.0000 80 chrV:5763985-5764065 1.0000 80 chrM:3884-3964 1.0000 80 chrX:7990532-7990612 1.0000 80 chrIV:8535112-8535192 1.0000 80 chrM:13610-13690 1.0000 80 chrM:1766-1846 1.0000 80 chrM:11496-11576 1.0000 80 chrV:19212570-19212650 1.0000 80 chrII:848686-848766 1.0000 80 chrV:3644466-3644546 1.0000 80 chrM:859-939 1.0000 80 chrII:4089374-4089454 1.0000 80 chrM:6951-7031 1.0000 80 chrX:16725081-16725161 1.0000 80 chrI:8867572-8867652 1.0000 80 chrM:2918-2998 1.0000 80 chrI:6574764-6574844 1.0000 80 chrII:12625819-12625899 1.0000 80 chrIII:6360303-6360383 1.0000 80 chrIV:8980003-8980083 1.0000 80 chrX:6743023-6743103 1.0000 80 chrM:3656-3736 1.0000 80 chrII:5283007-5283087 1.0000 80 chrIV:6100005-6100085 1.0000 80 chrM:6433-6513 1.0000 80 chrII:13829798-13829878 1.0000 80 chrII:5605555-5605635 1.0000 80 chrV:13081241-13081321 1.0000 80 chrIII:7718502-7718582 1.0000 80 chrII:9160279-9160359 1.0000 80 chrIV:14594325-14594405 1.0000 80 chrX:12422761-12422841 1.0000 80 chrM:2433-2513 1.0000 80 chrIII:7273066-7273146 1.0000 80 chrV:3391176-3391256 1.0000 80 chrX:7809306-7809386 1.0000 80 chrI:10752095-10752175 1.0000 80 chrIV:15901293-15901373 1.0000 80 chrIV:5216553-5216633 1.0000 80 chrIII:7721044-7721124 1.0000 80 chrII:12042667-12042747 1.0000 80 chrX:12451443-12451523 1.0000 80 chrIV:10855355-10855435 1.0000 80 chrX:12523207-12523287 1.0000 80 chrI:8344535-8344615 1.0000 80 chrIV:8530688-8530768 1.0000 80 chrI:10750062-10750142 1.0000 80 chrII:9128412-9128492 1.0000 80 chrM:8333-8413 1.0000 80 chrIV:13318902-13318982 1.0000 80 chrV:11616067-11616147 1.0000 80 chrM:10969-11049 1.0000 80 chrI:7661085-7661165 1.0000 80 chrX:13356506-13356586 1.0000 80 chrX:17063996-17064076 1.0000 80 chrIII:2090887-2090967 1.0000 80 chrM:2020-2100 1.0000 80 chrM:9087-9167 1.0000 80 chrV:14510933-14511013 1.0000 80 chrIII:5443003-5443083 1.0000 80 chrV:9095713-9095793 1.0000 80 chrI:5025662-5025742 1.0000 80 chrV:11617240-11617320 1.0000 80 chrIV:8527759-8527839 1.0000 80 chrII:14798303-14798383 1.0000 80 chrX:13528731-13528811 1.0000 80 chrI:7659049-7659129 1.0000 80 chrIV:11491457-11491537 1.0000 80 chrIV:8043807-8043887 1.0000 80 chrV:8027707-8027787 1.0000 80 chrI:8865505-8865585 1.0000 80 chrIV:5591348-5591428 1.0000 80 chrIV:14612806-14612886 1.0000 80 chrV:20729113-20729193 1.0000 80 chrII:12185906-12185986 1.0000 80 chrII:6891993-6892073 1.0000 80 chrM:3153-3233 1.0000 80 chrV:10951866-10951946 1.0000 80 chrM:7155-7235 1.0000 80 chrV:532151-532231 1.0000 80 chrM:4708-4788 1.0000 80 chrM:12379-12459 1.0000 80 chrX:8475290-8475370 1.0000 80 chrM:6197-6277 1.0000 80 chrIII:10337583-10337663 1.0000 80 chrIII:7723902-7723982 1.0000 80 chrX:6254451-6254531 1.0000 80 chrV:13565317-13565397 1.0000 80 chrIII:5943946-5944026 1.0000 80 chrM:2222-2302 1.0000 80 chrX:15607694-15607774 1.0000 80 chrV:9516478-9516558 1.0000 80 chrIV:6839158-6839238 1.0000 80 chrI:8865726-8865806 1.0000 80 chrX:7181753-7181833 1.0000 80 chrX:10771089-10771169 1.0000 80 chrX:1389511-1389591 1.0000 80 chrX:14707039-14707119 1.0000 80 chrII:5019519-5019599 1.0000 80 chrII:7529282-7529362 1.0000 80 chrIV:11956469-11956549 1.0000 80 chrV:13658719-13658799 1.0000 80 chrI:6091829-6091909 1.0000 80 chrV:18346218-18346298 1.0000 80 chrII:6849391-6849471 1.0000 80 chrV:6246689-6246769 1.0000 80 chrM:12604-12684 1.0000 80 chrV:13657511-13657591 1.0000 80 chrX:8232078-8232158 1.0000 80 chrII:6842795-6842875 1.0000 80 chrII:8016967-8017047 1.0000 80 chrX:12872461-12872541 1.0000 80 chrX:2364813-2364893 1.0000 80 chrV:5780876-5780956 1.0000 80 chrV:1743706-1743786 1.0000 80 chrV:11572961-11573041 1.0000 80 chrIII:6895295-6895375 1.0000 80 chrIV:8949862-8949942 1.0000 80 chrV:7093943-7094023 1.0000 80 chrIV:13919401-13919481 1.0000 80 chrII:7337562-7337642 1.0000 80 chrV:11886104-11886184 1.0000 80 chrIV:7049709-7049789 1.0000 80 chrII:9603545-9603625 1.0000 80 chrIII:3279375-3279455 1.0000 80 chrX:14560420-14560500 1.0000 80 chrII:5337065-5337145 1.0000 80 chrII:6888427-6888507 1.0000 80 chrX:14169763-14169843 1.0000 80 chrX:10772244-10772324 1.0000 80 chrII:10552121-10552201 1.0000 80 chrI:8426852-8426932 1.0000 80 chrIV:2602127-2602207 1.0000 80 chrII:5330278-5330358 1.0000 80 chrX:6743946-6744026 1.0000 80 chrX:12501016-12501096 1.0000 80 chrI:8816552-8816632 1.0000 80 chrIV:11149791-11149871 1.0000 80 chrX:6737797-6737877 1.0000 80 chrX:8550309-8550389 1.0000 80 chrX:6750258-6750338 1.0000 80 chrV:10858511-10858591 1.0000 80 chrI:10297992-10298072 1.0000 80 chrIII:4195350-4195430 1.0000 80 chrI:7595652-7595732 1.0000 80 chrIV:3160900-3160980 1.0000 80 chrV:9790047-9790127 1.0000 80 chrII:6346843-6346923 1.0000 80 chrV:6229560-6229640 1.0000 80 chrI:315248-315328 1.0000 80 chrI:8787009-8787089 1.0000 80 chrIII:7153967-7154047 1.0000 80 chrX:15276860-15276940 1.0000 80 chrV:14055185-14055265 1.0000 80 chrIII:6421230-6421310 1.0000 80 chrV:14200260-14200340 1.0000 80 chrX:12363179-12363259 1.0000 80 chrI:7079568-7079648 1.0000 80 chrIV:4020037-4020117 1.0000 80 chrX:16056518-16056598 1.0000 80 chrX:13514534-13514614 1.0000 80 chrII:8747394-8747474 1.0000 80 chrIII:1925284-1925364 1.0000 80 chrV:9546994-9547074 1.0000 80 chrIV:6790599-6790679 1.0000 80 chrX:1344966-1345046 1.0000 80 chrIII:8447137-8447217 1.0000 80 chrV:8936263-8936343 1.0000 80 chrII:12102514-12102594 1.0000 80 chrIII:9054006-9054086 1.0000 80 chrIII:7155810-7155890 1.0000 80 chrX:15707600-15707680 1.0000 80 chrIII:3456397-3456477 1.0000 80 chrV:20778404-20778484 1.0000 80 chrI:9381788-9381868 1.0000 80 chrIII:7335377-7335457 1.0000 80 chrIII:12612585-12612665 1.0000 80 chrII:2974051-2974131 1.0000 80 chrIV:4049712-4049792 1.0000 80 chrX:16682086-16682166 1.0000 80 chrIII:5679099-5679179 1.0000 80 chrIII:9051446-9051526 1.0000 80 chrIV:17249845-17249925 1.0000 80 chrIII:4649507-4649587 1.0000 80 chrX:9958704-9958784 1.0000 80 chrX:5841247-5841327 1.0000 80 chrIII:4899882-4899962 1.0000 80 chrX:17513790-17513870 1.0000 80 chrIV:5657246-5657326 1.0000 80 chrIII:1080720-1080800 1.0000 80 chrII:6589067-6589147 1.0000 80 chrX:9465783-9465863 1.0000 80 chrIII:1926537-1926617 1.0000 80 chrII:8561385-8561465 1.0000 80 chrI:2291257-2291337 1.0000 80 chrII:7152119-7152199 1.0000 80 chrIII:833833-833913 1.0000 80 chrV:14685734-14685814 1.0000 80 chrX:5429499-5429579 1.0000 80 chrV:12343666-12343746 1.0000 80 chrV:6000435-6000515 1.0000 80 chrV:18967833-18967913 1.0000 80 chrIII:12905163-12905243 1.0000 80 chrX:1627119-1627199 1.0000 80 chrI:535381-535461 1.0000 80 chrIII:13643656-13643736 1.0000 80 chrV:16965844-16965924 1.0000 80 chrX:806636-806716 1.0000 80 chrII:12678017-12678097 1.0000 80 chrX:13700783-13700863 1.0000 80 chrII:1320570-1320650 1.0000 80 chrX:11937498-11937578 1.0000 80 chrIII:1921417-1921497 1.0000 80 chrI:13663308-13663388 1.0000 80 chrX:15353988-15354068 1.0000 80 chrIV:17278562-17278642 1.0000 80 chrIV:654887-654967 1.0000 80 chrIV:4750064-4750144 1.0000 80 chrII:6348552-6348632 1.0000 80 chrII:10563536-10563616 1.0000 80 chrIII:6972049-6972129 1.0000 80 chrI:536848-536928 1.0000 80 chrIII:7854643-7854723 1.0000 80 chrI:9626044-9626124 1.0000 80 chrIV:1094322-1094402 1.0000 80 chrI:4699433-4699513 1.0000 80 chrI:8813472-8813552 1.0000 80 chrX:11094152-11094232 1.0000 80 chrIII:3867544-3867624 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/worm/inference_raw/MEME/RankLinear2.0_40_nhr-76/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/worm/fasta/RankLinear2.0_40/nhr-76.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.278 C 0.205 G 0.203 T 0.314 Background letter frequencies (from file dataset with add-one prior applied): A 0.278 C 0.205 G 0.203 T 0.314 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF SARARAAD MEME-1 width = 8 sites = 102 llr = 689 E-value = 1.5e-015 ******************************************************************************** -------------------------------------------------------------------------------- Motif SARARAAD MEME-1 Description -------------------------------------------------------------------------------- Simplified A :a4a6a63 pos.-specific C 4:::::21 probability G 6:6:4:34 matrix T :::::::2 bits 2.3 2.1 1.8 * * * 1.6 * * * Relative 1.4 ** * * Entropy 1.1 **** * (9.7 bits) 0.9 ****** 0.7 ******* 0.5 ******* 0.2 ******* 0.0 -------- Multilevel GAGAAAAG consensus C A G GA sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SARARAAD MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:15353988-15354068 36 1.39e-05 GAGGTGGGCA GAGAAAAG AAAAGACGCC chrII:12102514-12102594 58 1.39e-05 agacgcagat gagaAAAG ATACTTGCAA chrI:10297992-10298072 71 1.39e-05 GCAGGAAGAG GAGAAAAG TC chrX:14169763-14169843 50 1.39e-05 GGACTAGAGG GAGAAAAG GGAATACACT chrII:9603545-9603625 61 1.39e-05 TCATTTTTGA GAGAAAAG ACAGTGTACT chrIV:11491457-11491537 2 1.39e-05 C GAGAAAAG ATATTGTTTA chrV:9095713-9095793 51 1.39e-05 AGACCACAGC GAGAAAAG AAACGCAGGA chrII:5605555-5605635 38 1.39e-05 TTTGAAACGG GAGAAAAG AACCTATCTT chrI:7079568-7079648 64 2.40e-05 aagaaagaaa gagagaag agaaagaaa chrII:5283007-5283087 34 2.40e-05 AAAATGAGAC GAGAGAAG GTAGTTGTTA chrV:16965844-16965924 14 3.42e-05 AGACGCAGAC GAGAAAGG TGCAGTGGAG chrX:8550309-8550389 66 3.42e-05 tgagaaagaa gagaaagG GAGGCAC chrIII:9051446-9051526 73 6.06e-05 TACAAAGTGT GAGAGAGG chrII:2974051-2974131 68 6.06e-05 GGCGCAGAGA GAGAGAGG GCGCC chrV:6229560-6229640 27 6.06e-05 TCATTCCCTC GAGAAAAA CGAATGGGAA chrIV:3160900-3160980 2 6.06e-05 G GAGAAAAA AAAATGGAAA chrIII:3279375-3279455 32 6.06e-05 CACTGAGAAA GAGAGAGG CGCAGACAGT chrIV:6839158-6839238 57 6.06e-05 GAGAGGAATA GAGAAAAA GAGAATGAAA chrI:8865505-8865585 44 6.06e-05 AGAGAAAAAA GAGAAAAA ATAGAGACAG chrX:13356506-13356586 25 6.06e-05 TCTTCTCATC GAGAAAAA AGTTAAGTGT chrV:3391176-3391256 64 6.06e-05 TTGAGTCGCA GAGAAAAA AAGGGAACA chrM:2918-2998 20 6.06e-05 TTTATTTCAA GAGAAAAA TTTTCAGTTT chrV:7093943-7094023 63 8.85e-05 GAAAGTGATG GAGAGAAA GAACACGTGA chrX:7181753-7181833 3 8.85e-05 CC CAGAAAAG CGAAGGGTAT chrI:8813472-8813552 58 1.18e-04 GCAGTCCATT GAAAAAAG AATTTCTAGT chrI:8867572-8867652 46 1.18e-04 CAAACCGCGG GAAAAAAG TACATAAATC chrIV:9376711-9376791 16 1.18e-04 AAGCAGACaa gaaaaaag agatacaaag chrI:8869209-8869289 27 1.18e-04 ATGAAAAATT GAAAAAAG ACAAAAAGTT chrIV:14612806-14612886 30 1.53e-04 TTTGATCTTT GAGAAAAT AAAAATGTTG chrV:11616067-11616147 24 1.53e-04 GAGAATTTTC GAAAGAAG AAGTCAGTTT chrIV:5657246-5657326 21 1.83e-04 CAGGGTGTAC GAGAGAAT GCTGGAAAGC chrIII:6360303-6360383 1 1.83e-04 . GAGAAAGA ATCTGGCACC chrX:17513790-17513870 9 2.27e-04 GGGAAATG GAGAGAGA GCACGAGACG chrIII:7335377-7335457 59 2.27e-04 ATGACATGGG GAGAAAAC GACAGAAACT chrIII:8447137-8447217 5 2.27e-04 ATTC GAGAAACG TCTAGTACAT chrIV:6790599-6790679 43 2.27e-04 CACGAATGGT GAGAGAGA ATTGGCCTCC chrI:8787009-8787089 1 2.27e-04 . CAGAAAGG CGTGTTTTTC chrX:6750258-6750338 6 2.27e-04 CACAT GAGAAAAC ATAGACCCAC chrX:6737797-6737877 18 2.27e-04 GTGAGAAAAT GAGAAACG ACGTCACACA chrV:5780876-5780956 53 2.27e-04 GTGTGCGCAC GAGAGAGA GCACAGGCGC chrI:8865726-8865806 73 2.27e-04 CTCTTGAAGT GAGAGAGA chrI:6574764-6574844 70 2.27e-04 TTTGTACCGA GAGAGAGA GAG chrI:13663308-13663388 1 2.86e-04 . GAGAGACG ACGAGAGCGA chrIII:13643656-13643736 54 2.86e-04 CACAGTGCCA GAGAGACG CAGTGCGGCA chrII:7152119-7152199 28 2.86e-04 TTGGAAATGT GAGAGACG CAGCATTTCA chrII:10552121-10552201 50 2.86e-04 GTTCTTCTCG GAGAGACG TAGAGATACA chrII:5337065-5337145 40 2.86e-04 AATAAGAGAG CAGAAAAA CACAATAAGT chrIV:5216553-5216633 4 2.86e-04 TTA GAAAAAGG TTCGAGAAGA chrII:9686911-9686991 2 2.86e-04 T GAGAGAAC AAATTAAGAT chrIII:4899882-4899962 30 3.52e-04 GGCCGCTACG CAGAGAAA CCGCCTACTT chrX:16056518-16056598 30 3.52e-04 CGGCAAATTT GAAAAAAA AAAACGAGTC chrV:5763985-5764065 9 3.52e-04 AGAGAGTG CAGAGAAA TTAGAGGAAC chrV:6000435-6000515 58 4.01e-04 TTCAGAGAAC GAGAGAGT ATGCCACGGT chrII:7337562-7337642 14 4.01e-04 CATGACGTGT CAAAAAAG TCATCTGACT chrIII:7723902-7723982 62 4.01e-04 GAAGAATTTA GAGAGAGT AGAAGGTTCA chrIII:10337583-10337663 42 4.01e-04 TCACGTCATC CAAAAAAG TTTAGTAGGA chrII:9128412-9128492 25 4.01e-04 CAATTATTTC GAAAGAAA TCGAAACATT chrX:12422761-12422841 53 4.01e-04 AGTTTTGATG GAAAGAAA TGTGTGACTG chrX:15276860-15276940 11 4.47e-04 ACGGAGAATG CAAAGAAG ACATTTGCAC chrX:12872461-12872541 16 4.47e-04 catctctctG CAGAAAAT AAGGCAGAGA chrX:8232078-8232158 57 4.47e-04 TGATGGAAAA CAGAAAAT AACTTTTTAT chrX:15707600-15707680 3 5.28e-04 TG GAGAGAGC GCGATGGTAA chrI:8426852-8426932 15 5.28e-04 ACACACAAAC GAGAGAGC ACACATTTTG chrIV:13919401-13919481 4 5.28e-04 ACA CAGAGAAT CGGTCAAAAA chrX:6254451-6254531 45 5.28e-04 CAAAAGAGAA GAGAAACA AGACGAAACG chrX:12451443-12451523 5 5.28e-04 AATT GAAAAAAT AAACTGATTG chrX:6743946-6744026 50 6.14e-04 GCATCAGTTG GAAAAAGA AAAGGGTGAA chrIV:8043807-8043887 65 6.14e-04 AAATATTCAC CAGAAAAC CCGCTTTT chrII:6842795-6842875 27 6.93e-04 CTTCTCTGGC CAAAAAGG AAAGGTGATA chrX:8475290-8475370 58 6.93e-04 GTTCAACAAA CAGAGAAC ACTGCCAGTG chrI:7659049-7659129 21 6.93e-04 GTTCAAGAAT CAAAAAGG ATGCATGTCC chrII:848686-848766 59 6.93e-04 GGCAAAATAT GAAAGAGA CGCAGAGGGG chrIII:6972049-6972129 13 7.85e-04 TCACAAGGCC CAAAAAAA TCTCTCCCCC chrV:18967833-18967913 64 7.85e-04 GCATTGTGTA CAAAAAAA AAAATCCAC chrIII:7155810-7155890 53 7.85e-04 GATATCACTA GAGAAACT GAAAAGAACC chrII:6346843-6346923 29 8.49e-04 CTATACAGAT GAAAAAGT GATTTCGCAA chrX:1389511-1389591 21 8.49e-04 AATATCATGT GAGAGACT TTATTATAAG chrII:12678017-12678097 19 9.58e-04 GAAATTAATT CAAAAAAT GAGTGATGGC chrI:535381-535461 15 9.58e-04 ACTTTGCCAG CAAAAAAT TTTGTGCAAG chrV:12343666-12343746 16 9.58e-04 TTACATAAAA CAAAAAAT TTAATGTAAA chrIII:5679099-5679179 69 9.58e-04 CGGAGTGATA CAGAAACA TTTC chrX:1344966-1345046 22 9.58e-04 TTTTCCCTGT CAAAAAAT CTTGCCCCTT chrIV:4020037-4020117 5 9.58e-04 CAAC GAGAGACC CCTTTCTCTG chrV:18346218-18346298 25 9.58e-04 CAGTTGAATC CAAAAAAT CGCAAAAACA chrV:11617240-11617320 31 9.58e-04 TGTCTTTTGT CAAAAAAT TTTGGTTGAA chrIV:8530688-8530768 15 9.58e-04 AATTGAAAGT CAAAAAAT CAAACATGCT chrIV:15901293-15901373 19 9.58e-04 TTTTTTAGTT CAAAAAAT GTCTGCGTCT chrV:19212570-19212650 55 9.58e-04 CGGCTGCACG GAAAAAGC GTCAAGGCAC chrV:11886104-11886184 49 1.04e-03 TAGGAAATAA CAAAAAGA GATAGAAAAT chrM:1766-1846 45 1.04e-03 ttttattgtt CAAAGAAT CGCTTTTATT chrIII:6895295-6895375 23 1.10e-03 GACGATTTTC GAAAGACA CTTTCTCTGC chrM:7155-7235 68 1.10e-03 TTGTGTGTTT CAAAGAGA TTCAA chrI:5025662-5025742 37 1.10e-03 CTTAACAATA CAAAAAAC TGGTTTCATT chrII:7529282-7529362 18 1.14e-03 TTTTTCGTGG CAAAGAAC GTTCTCGAAC chrII:10563536-10563616 32 1.20e-03 CAAGTGTACG CAAAAAGT GTTTGGTGAT chrI:7595652-7595732 1 1.20e-03 . CAGAGACT TTGTTTTCTA chrIII:7718502-7718582 57 1.20e-03 TTGTTTGTTC CAAAAAGT GTGTGACGGG chrV:8027707-8027787 54 1.27e-03 CGCACCTTTT CAGAGACC GTCAAATTCT chrIII:3456397-3456477 60 1.31e-03 GTGTGTAAAA CAAAAACA ATCGGCTGCT chrV:14055185-14055265 72 1.31e-03 ACCATGCGGC GAAAGACC A chrIV:11097918-11097998 18 1.40e-03 AACAATAAAC GAGACAAG ACGCAGAGTG chrI:6091829-6091909 46 1.57e-03 AGTACTTGAA AAGAAAGG AACTACGTAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SARARAAD MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:15353988-15354068 1.4e-05 35_[+1]_37 chrII:12102514-12102594 1.4e-05 57_[+1]_15 chrI:10297992-10298072 1.4e-05 70_[+1]_2 chrX:14169763-14169843 1.4e-05 49_[+1]_23 chrII:9603545-9603625 1.4e-05 60_[+1]_12 chrIV:11491457-11491537 1.4e-05 1_[+1]_71 chrV:9095713-9095793 1.4e-05 50_[+1]_22 chrII:5605555-5605635 1.4e-05 37_[+1]_35 chrI:7079568-7079648 2.4e-05 63_[+1]_9 chrII:5283007-5283087 2.4e-05 33_[+1]_39 chrV:16965844-16965924 3.4e-05 13_[+1]_59 chrX:8550309-8550389 3.4e-05 65_[+1]_7 chrIII:9051446-9051526 6.1e-05 72_[+1] chrII:2974051-2974131 6.1e-05 67_[+1]_5 chrV:6229560-6229640 6.1e-05 26_[+1]_46 chrIV:3160900-3160980 6.1e-05 1_[+1]_71 chrIII:3279375-3279455 6.1e-05 31_[+1]_41 chrIV:6839158-6839238 6.1e-05 56_[+1]_16 chrI:8865505-8865585 6.1e-05 43_[+1]_29 chrX:13356506-13356586 6.1e-05 24_[+1]_48 chrV:3391176-3391256 6.1e-05 63_[+1]_9 chrM:2918-2998 6.1e-05 19_[+1]_53 chrV:7093943-7094023 8.9e-05 62_[+1]_10 chrX:7181753-7181833 8.9e-05 2_[+1]_70 chrI:8813472-8813552 0.00012 57_[+1]_15 chrI:8867572-8867652 0.00012 45_[+1]_27 chrIV:9376711-9376791 0.00012 15_[+1]_57 chrI:8869209-8869289 0.00012 26_[+1]_46 chrIV:14612806-14612886 0.00015 29_[+1]_43 chrV:11616067-11616147 0.00015 23_[+1]_49 chrIV:5657246-5657326 0.00018 20_[+1]_52 chrIII:6360303-6360383 0.00018 [+1]_72 chrX:17513790-17513870 0.00023 8_[+1]_64 chrIII:7335377-7335457 0.00023 58_[+1]_14 chrIII:8447137-8447217 0.00023 4_[+1]_68 chrIV:6790599-6790679 0.00023 42_[+1]_30 chrI:8787009-8787089 0.00023 [+1]_72 chrX:6750258-6750338 0.00023 5_[+1]_67 chrX:6737797-6737877 0.00023 17_[+1]_55 chrV:5780876-5780956 0.00023 52_[+1]_20 chrI:8865726-8865806 0.00023 72_[+1] chrI:6574764-6574844 0.00023 69_[+1]_3 chrI:13663308-13663388 0.00029 [+1]_72 chrIII:13643656-13643736 0.00029 53_[+1]_19 chrII:7152119-7152199 0.00029 27_[+1]_45 chrII:10552121-10552201 0.00029 49_[+1]_23 chrII:5337065-5337145 0.00029 39_[+1]_33 chrIV:5216553-5216633 0.00029 3_[+1]_69 chrII:9686911-9686991 0.00029 1_[+1]_71 chrIII:4899882-4899962 0.00035 29_[+1]_43 chrX:16056518-16056598 0.00035 29_[+1]_43 chrV:5763985-5764065 0.00035 8_[+1]_64 chrV:6000435-6000515 0.0004 57_[+1]_15 chrII:7337562-7337642 0.0004 13_[+1]_59 chrIII:7723902-7723982 0.0004 61_[+1]_11 chrIII:10337583-10337663 0.0004 41_[+1]_31 chrII:9128412-9128492 0.0004 24_[+1]_48 chrX:12422761-12422841 0.0004 52_[+1]_20 chrX:15276860-15276940 0.00045 10_[+1]_62 chrX:12872461-12872541 0.00045 15_[+1]_57 chrX:8232078-8232158 0.00045 56_[+1]_16 chrX:15707600-15707680 0.00053 2_[+1]_70 chrI:8426852-8426932 0.00053 14_[+1]_58 chrIV:13919401-13919481 0.00053 3_[+1]_69 chrX:6254451-6254531 0.00053 44_[+1]_28 chrX:12451443-12451523 0.00053 4_[+1]_68 chrX:6743946-6744026 0.00061 49_[+1]_23 chrIV:8043807-8043887 0.00061 64_[+1]_8 chrII:6842795-6842875 0.00069 26_[+1]_46 chrX:8475290-8475370 0.00069 57_[+1]_15 chrI:7659049-7659129 0.00069 20_[+1]_52 chrII:848686-848766 0.00069 58_[+1]_14 chrIII:6972049-6972129 0.00079 12_[+1]_60 chrV:18967833-18967913 0.00079 63_[+1]_9 chrIII:7155810-7155890 0.00079 52_[+1]_20 chrII:6346843-6346923 0.00085 28_[+1]_44 chrX:1389511-1389591 0.00085 20_[+1]_52 chrII:12678017-12678097 0.00096 18_[+1]_54 chrI:535381-535461 0.00096 14_[+1]_58 chrV:12343666-12343746 0.00096 15_[+1]_57 chrIII:5679099-5679179 0.00096 68_[+1]_4 chrX:1344966-1345046 0.00096 21_[+1]_51 chrIV:4020037-4020117 0.00096 4_[+1]_68 chrV:18346218-18346298 0.00096 24_[+1]_48 chrV:11617240-11617320 0.00096 30_[+1]_42 chrIV:8530688-8530768 0.00096 14_[+1]_58 chrIV:15901293-15901373 0.00096 18_[+1]_54 chrV:19212570-19212650 0.00096 54_[+1]_18 chrV:11886104-11886184 0.001 48_[+1]_24 chrM:1766-1846 0.001 44_[+1]_28 chrIII:6895295-6895375 0.0011 22_[+1]_50 chrM:7155-7235 0.0011 67_[+1]_5 chrI:5025662-5025742 0.0011 36_[+1]_36 chrII:7529282-7529362 0.0011 17_[+1]_55 chrII:10563536-10563616 0.0012 31_[+1]_41 chrI:7595652-7595732 0.0012 [+1]_72 chrIII:7718502-7718582 0.0012 56_[+1]_16 chrV:8027707-8027787 0.0013 53_[+1]_19 chrIII:3456397-3456477 0.0013 59_[+1]_13 chrV:14055185-14055265 0.0013 71_[+1]_1 chrIV:11097918-11097998 0.0014 17_[+1]_55 chrI:6091829-6091909 0.0016 45_[+1]_27 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SARARAAD MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF SARARAAD width=8 seqs=102 chrX:15353988-15354068 ( 36) GAGAAAAG 1 chrII:12102514-12102594 ( 58) GAGAAAAG 1 chrI:10297992-10298072 ( 71) GAGAAAAG 1 chrX:14169763-14169843 ( 50) GAGAAAAG 1 chrII:9603545-9603625 ( 61) GAGAAAAG 1 chrIV:11491457-11491537 ( 2) GAGAAAAG 1 chrV:9095713-9095793 ( 51) GAGAAAAG 1 chrII:5605555-5605635 ( 38) GAGAAAAG 1 chrI:7079568-7079648 ( 64) GAGAGAAG 1 chrII:5283007-5283087 ( 34) GAGAGAAG 1 chrV:16965844-16965924 ( 14) GAGAAAGG 1 chrX:8550309-8550389 ( 66) GAGAAAGG 1 chrIII:9051446-9051526 ( 73) GAGAGAGG 1 chrII:2974051-2974131 ( 68) GAGAGAGG 1 chrV:6229560-6229640 ( 27) GAGAAAAA 1 chrIV:3160900-3160980 ( 2) GAGAAAAA 1 chrIII:3279375-3279455 ( 32) GAGAGAGG 1 chrIV:6839158-6839238 ( 57) GAGAAAAA 1 chrI:8865505-8865585 ( 44) GAGAAAAA 1 chrX:13356506-13356586 ( 25) GAGAAAAA 1 chrV:3391176-3391256 ( 64) GAGAAAAA 1 chrM:2918-2998 ( 20) GAGAAAAA 1 chrV:7093943-7094023 ( 63) GAGAGAAA 1 chrX:7181753-7181833 ( 3) CAGAAAAG 1 chrI:8813472-8813552 ( 58) GAAAAAAG 1 chrI:8867572-8867652 ( 46) GAAAAAAG 1 chrIV:9376711-9376791 ( 16) GAAAAAAG 1 chrI:8869209-8869289 ( 27) GAAAAAAG 1 chrIV:14612806-14612886 ( 30) GAGAAAAT 1 chrV:11616067-11616147 ( 24) GAAAGAAG 1 chrIV:5657246-5657326 ( 21) GAGAGAAT 1 chrIII:6360303-6360383 ( 1) GAGAAAGA 1 chrX:17513790-17513870 ( 9) GAGAGAGA 1 chrIII:7335377-7335457 ( 59) GAGAAAAC 1 chrIII:8447137-8447217 ( 5) GAGAAACG 1 chrIV:6790599-6790679 ( 43) GAGAGAGA 1 chrI:8787009-8787089 ( 1) CAGAAAGG 1 chrX:6750258-6750338 ( 6) GAGAAAAC 1 chrX:6737797-6737877 ( 18) GAGAAACG 1 chrV:5780876-5780956 ( 53) GAGAGAGA 1 chrI:8865726-8865806 ( 73) GAGAGAGA 1 chrI:6574764-6574844 ( 70) GAGAGAGA 1 chrI:13663308-13663388 ( 1) GAGAGACG 1 chrIII:13643656-13643736 ( 54) GAGAGACG 1 chrII:7152119-7152199 ( 28) GAGAGACG 1 chrII:10552121-10552201 ( 50) GAGAGACG 1 chrII:5337065-5337145 ( 40) CAGAAAAA 1 chrIV:5216553-5216633 ( 4) GAAAAAGG 1 chrII:9686911-9686991 ( 2) GAGAGAAC 1 chrIII:4899882-4899962 ( 30) CAGAGAAA 1 chrX:16056518-16056598 ( 30) GAAAAAAA 1 chrV:5763985-5764065 ( 9) CAGAGAAA 1 chrV:6000435-6000515 ( 58) GAGAGAGT 1 chrII:7337562-7337642 ( 14) CAAAAAAG 1 chrIII:7723902-7723982 ( 62) GAGAGAGT 1 chrIII:10337583-10337663 ( 42) CAAAAAAG 1 chrII:9128412-9128492 ( 25) GAAAGAAA 1 chrX:12422761-12422841 ( 53) GAAAGAAA 1 chrX:15276860-15276940 ( 11) CAAAGAAG 1 chrX:12872461-12872541 ( 16) CAGAAAAT 1 chrX:8232078-8232158 ( 57) CAGAAAAT 1 chrX:15707600-15707680 ( 3) GAGAGAGC 1 chrI:8426852-8426932 ( 15) GAGAGAGC 1 chrIV:13919401-13919481 ( 4) CAGAGAAT 1 chrX:6254451-6254531 ( 45) GAGAAACA 1 chrX:12451443-12451523 ( 5) GAAAAAAT 1 chrX:6743946-6744026 ( 50) GAAAAAGA 1 chrIV:8043807-8043887 ( 65) CAGAAAAC 1 chrII:6842795-6842875 ( 27) CAAAAAGG 1 chrX:8475290-8475370 ( 58) CAGAGAAC 1 chrI:7659049-7659129 ( 21) CAAAAAGG 1 chrII:848686-848766 ( 59) GAAAGAGA 1 chrIII:6972049-6972129 ( 13) CAAAAAAA 1 chrV:18967833-18967913 ( 64) CAAAAAAA 1 chrIII:7155810-7155890 ( 53) GAGAAACT 1 chrII:6346843-6346923 ( 29) GAAAAAGT 1 chrX:1389511-1389591 ( 21) GAGAGACT 1 chrII:12678017-12678097 ( 19) CAAAAAAT 1 chrI:535381-535461 ( 15) CAAAAAAT 1 chrV:12343666-12343746 ( 16) CAAAAAAT 1 chrIII:5679099-5679179 ( 69) CAGAAACA 1 chrX:1344966-1345046 ( 22) CAAAAAAT 1 chrIV:4020037-4020117 ( 5) GAGAGACC 1 chrV:18346218-18346298 ( 25) CAAAAAAT 1 chrV:11617240-11617320 ( 31) CAAAAAAT 1 chrIV:8530688-8530768 ( 15) CAAAAAAT 1 chrIV:15901293-15901373 ( 19) CAAAAAAT 1 chrV:19212570-19212650 ( 55) GAAAAAGC 1 chrV:11886104-11886184 ( 49) CAAAAAGA 1 chrM:1766-1846 ( 45) CAAAGAAT 1 chrIII:6895295-6895375 ( 23) GAAAGACA 1 chrM:7155-7235 ( 68) CAAAGAGA 1 chrI:5025662-5025742 ( 37) CAAAAAAC 1 chrII:7529282-7529362 ( 18) CAAAGAAC 1 chrII:10563536-10563616 ( 32) CAAAAAGT 1 chrI:7595652-7595732 ( 1) CAGAGACT 1 chrIII:7718502-7718582 ( 57) CAAAAAGT 1 chrV:8027707-8027787 ( 54) CAGAGACC 1 chrIII:3456397-3456477 ( 60) CAAAAACA 1 chrV:14055185-14055265 ( 72) GAAAGACC 1 chrIV:11097918-11097998 ( 18) GAGACAAG 1 chrI:6091829-6091909 ( 46) AAGAAAGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SARARAAD MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.62841 E= 1.5e-015 -482 79 165 -1332 185 -1332 -1332 -1332 46 -1332 160 -1332 185 -1332 -1332 -1332 113 -438 91 -1332 185 -1332 -1332 -1332 103 -38 43 -1332 8 -68 80 -48 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SARARAAD MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 102 E= 1.5e-015 0.009804 0.352941 0.637255 0.000000 1.000000 0.000000 0.000000 0.000000 0.382353 0.000000 0.617647 0.000000 1.000000 0.000000 0.000000 0.000000 0.607843 0.009804 0.382353 0.000000 1.000000 0.000000 0.000000 0.000000 0.568627 0.156863 0.274510 0.000000 0.294118 0.127451 0.352941 0.225490 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SARARAAD MEME-1 regular expression -------------------------------------------------------------------------------- [GC]A[GA]A[AG]A[AG][GAT] -------------------------------------------------------------------------------- Time 6.41 secs. ******************************************************************************** ******************************************************************************** MOTIF YTTTCTCT MEME-2 width = 8 sites = 63 llr = 467 E-value = 6.5e-006 ******************************************************************************** -------------------------------------------------------------------------------- Motif YTTTCTCT MEME-2 Description -------------------------------------------------------------------------------- Simplified A :1:::::: pos.-specific C 4:2:91a: probability G :1:::::: matrix T 687a19:a bits 2.3 2.1 * 1.8 * 1.6 ** ** Relative 1.4 ***** Entropy 1.1 ***** (10.7 bits) 0.9 * ***** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TTTTCTCT consensus C C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTTTCTCT MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrV:18967833-18967913 14 2.63e-05 TTTTGCGTCA CTTTCTCT GCGTCTCCAC chrII:6589067-6589147 42 2.63e-05 ATACTCCTTT CTTTCTCT ATTTCTCTAT chrIII:7335377-7335457 15 2.63e-05 ATGCCCTTCT CTTTCTCT CTTTTCACTT chrIV:4020037-4020117 14 2.63e-05 CGAGAGACCC CTTTCTCT GGATAGAATA chrIII:6895295-6895375 31 2.63e-05 TCGAAAGACA CTTTCTCT GCGTCTCTTC chrI:8865726-8865806 12 2.63e-05 TGCATCATCT CTTTCTCT CATTGTGTTT chrIII:2090887-2090967 23 2.63e-05 CTGGGTTACT CTTTCTCT GAGTGTCTGC chrIII:7721044-7721124 21 2.63e-05 TTGCGCCTCT CTTTCTCT CCTCCAATCG chrX:6743023-6743103 3 2.63e-05 TC CTTTCTCT CATTTCTCTC chrI:2291257-2291337 47 6.66e-05 TGTTTCGCAT TTTTCTCT GTTTTCTCGT chrIII:4649507-4649587 55 6.66e-05 TTTGTCGGTC TTTTCTCT CGTCACTTTT chrX:15276860-15276940 29 6.66e-05 ACATTTGCAC TTTtctct atttctcttc chrX:6737797-6737877 69 6.66e-05 CCCCATTGAT TTTTCTCT CTAA chrIV:7049709-7049789 36 6.66e-05 ATACTAGTTT TTTTCTCT CTTTAATTTC chrV:13657511-13657591 7 6.66e-05 TTTCAC TTTTCTCT TTTTTATCAC chrV:6246689-6246769 56 6.66e-05 CGCCGCCTCG TTTTCTCT TGCGTCTCGT chrI:6091829-6091909 20 6.66e-05 CCTTTTCTGG TTTTCTCT GTATCATTAG chrII:5019519-5019599 53 6.66e-05 TACTCTGTAT TTTTCTCT ATCTCTCTCA chrM:3153-3233 43 6.66e-05 CAAAGTTATA TTTTCTCT CGTTTAATTT chrV:20729113-20729193 19 6.66e-05 AACACTGTCT TTTTCTCT GCGTCTCTCA chrIV:8043807-8043887 38 6.66e-05 TTCCGCGCCC TTTTCTCT AGATTCTAGA chrIII:6360303-6360383 31 6.66e-05 CTCCGATCAC TTTTCTCT TGATGTCTGC chrV:5763985-5764065 30 6.66e-05 GAGGAACAGA TTTTCTCT GGGTCTCTTC chrIV:17278562-17278642 20 8.37e-05 GTGGTGCGCG CTCTCTCT CCCCCTTTTC chrIII:1926537-1926617 33 8.37e-05 AGCACACTCT CTCTCTCT CATCGTGCTC chrI:10297992-10298072 44 8.37e-05 CTTCCCGCCG CTCTCTCT CTGACTCCCG chrII:5330278-5330358 44 8.37e-05 TTTtccctca ctctctct gtctctatgt chrIV:11491457-11491537 40 8.37e-05 CCCTTCGTCT CTCTCTCT CTTTCAGAAA chrV:13081241-13081321 57 8.37e-05 GGCAACATTC CTCTCTCT ATTTCCATTA chrV:3644466-3644546 7 8.37e-05 GACACC CTCTCTCT TTCCCTCCCG chrI:8787009-8787089 22 1.10e-04 GTTTTTCTGT TTCTCTCT ATCCGAGTTC chrX:17513790-17513870 50 1.53e-04 GGATGCCAGT TGTTCTCT CCTTTTGCTA chrIII:12612585-12612665 22 1.53e-04 TTCTTCGTCG TGTTCTCT GGCGTCTCCA chrIII:1925284-1925364 17 1.53e-04 GTCTCCGTCg tgttctct gtgtgtgtgt chrV:8655223-8655303 15 1.53e-04 AACGTATCAT TGTTCTCT TCTTTTATGA chrIII:7718502-7718582 15 1.76e-04 CTATCTATCA CATTCTCT CATTTTGACA chrX:12425499-12425579 62 1.76e-04 TCCTATCATT CATTCTCT GCTATCCCAT chrII:6888427-6888507 32 2.87e-04 GTTTTTATTA CTTTTTCT TATCATTCCT chrIV:8949862-8949942 73 2.87e-04 TTTCTATTCA CTTTTTCT chrX:7809306-7809386 48 2.87e-04 tttccgttta ctttttct tttttacttt chrX:1344966-1345046 12 3.24e-04 ACTTCAATTT TTTTCCCT GTCAAAAAAT chrX:12363179-12363259 23 3.24e-04 GGGTACAATC TTTTCCCT ATCTTTTATC chrIV:6100005-6100085 29 3.24e-04 ATACTCTTTT TTTTCCCT CGATAAATTG chrIII:7153967-7154047 28 4.35e-04 ACTCTACCTA CTATCTCT GATTTCTCTA chrII:6842795-6842875 16 4.35e-04 TCGGCCGCCC TCTTCTCT GGCCAAAAAG chrII:7529282-7529362 41 4.35e-04 CGAACGTTTC TTTTTTCT TTTTCACTCA chrM:12379-12459 27 4.35e-04 TTTACTATAT TTTTTTCT AGCTTAGCAA chrII:12185906-12185986 29 4.35e-04 AATAATAGGG TCTTCTCT TACTGTCTTA chrV:8027707-8027787 12 4.35e-04 CCACCTTTTG CTATCTCT TTTTTTCAAT chrIV:14594325-14594405 66 4.35e-04 CGAGGTAAAC TTTTTTCT TCACTGT chrIV:8535112-8535192 49 4.35e-04 GTGCCCCATG TCTTCTCT AAGTCTCTTC chrIII:1921417-1921497 36 4.52e-04 TATACCGGCG TGCTCTCT AGCCGTCTCT chrV:14200260-14200340 19 5.03e-04 TCGTCTCGCA CACTCTCT CGCCCATCCA chrII:9603545-9603625 16 5.03e-04 CTTTCTATCT CACTCTCT GCGTTTCTCT chrII:13829798-13829878 28 5.03e-04 CTCAGTCTCC TTATCTCT CAAGTTTTGC chrX:5841247-5841327 1 5.75e-04 . ctctttct GCCATCTTTT chrV:9790047-9790127 4 5.75e-04 CTA TACTCTCT CGTCGATCAC chrX:13356506-13356586 10 5.75e-04 AAACTTCCG CTCTTTCT TCTCATCGAG chrX:806636-806716 19 5.92e-04 TCCGCTTTTA TTCTCCCT GTGCGATTAT chrX:1627119-1627199 54 7.52e-04 GGGGTAGAGG TTTTCTTT TTATTTGCTA chrM:859-939 44 7.52e-04 TCTTATAAAG TTTTCTTT CAGGGAATTA chrII:9686911-9686991 46 7.52e-04 ATGAATCAGT TTTTCTTT TGACAAAACT chrI:10750062-10750142 2 7.69e-04 A CTTTCTCG TAAACAACTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTTTCTCT MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:18967833-18967913 2.6e-05 13_[+2]_59 chrII:6589067-6589147 2.6e-05 41_[+2]_31 chrIII:7335377-7335457 2.6e-05 14_[+2]_58 chrIV:4020037-4020117 2.6e-05 13_[+2]_59 chrIII:6895295-6895375 2.6e-05 30_[+2]_42 chrI:8865726-8865806 2.6e-05 11_[+2]_61 chrIII:2090887-2090967 2.6e-05 22_[+2]_50 chrIII:7721044-7721124 2.6e-05 20_[+2]_52 chrX:6743023-6743103 2.6e-05 2_[+2]_70 chrI:2291257-2291337 6.7e-05 46_[+2]_26 chrIII:4649507-4649587 6.7e-05 54_[+2]_18 chrX:15276860-15276940 6.7e-05 28_[+2]_44 chrX:6737797-6737877 6.7e-05 68_[+2]_4 chrIV:7049709-7049789 6.7e-05 35_[+2]_37 chrV:13657511-13657591 6.7e-05 6_[+2]_66 chrV:6246689-6246769 6.7e-05 55_[+2]_17 chrI:6091829-6091909 6.7e-05 19_[+2]_53 chrII:5019519-5019599 6.7e-05 52_[+2]_20 chrM:3153-3233 6.7e-05 42_[+2]_30 chrV:20729113-20729193 6.7e-05 18_[+2]_54 chrIV:8043807-8043887 6.7e-05 37_[+2]_35 chrIII:6360303-6360383 6.7e-05 30_[+2]_42 chrV:5763985-5764065 6.7e-05 29_[+2]_43 chrIV:17278562-17278642 8.4e-05 19_[+2]_53 chrIII:1926537-1926617 8.4e-05 32_[+2]_40 chrI:10297992-10298072 8.4e-05 43_[+2]_29 chrII:5330278-5330358 8.4e-05 43_[+2]_29 chrIV:11491457-11491537 8.4e-05 39_[+2]_33 chrV:13081241-13081321 8.4e-05 56_[+2]_16 chrV:3644466-3644546 8.4e-05 6_[+2]_66 chrI:8787009-8787089 0.00011 21_[+2]_51 chrX:17513790-17513870 0.00015 49_[+2]_23 chrIII:12612585-12612665 0.00015 21_[+2]_51 chrIII:1925284-1925364 0.00015 16_[+2]_56 chrV:8655223-8655303 0.00015 14_[+2]_58 chrIII:7718502-7718582 0.00018 14_[+2]_58 chrX:12425499-12425579 0.00018 61_[+2]_11 chrII:6888427-6888507 0.00029 31_[+2]_41 chrIV:8949862-8949942 0.00029 72_[+2] chrX:7809306-7809386 0.00029 47_[+2]_25 chrX:1344966-1345046 0.00032 11_[+2]_61 chrX:12363179-12363259 0.00032 22_[+2]_50 chrIV:6100005-6100085 0.00032 28_[+2]_44 chrIII:7153967-7154047 0.00044 27_[+2]_45 chrII:6842795-6842875 0.00044 15_[+2]_57 chrII:7529282-7529362 0.00044 40_[+2]_32 chrM:12379-12459 0.00044 26_[+2]_46 chrII:12185906-12185986 0.00044 28_[+2]_44 chrV:8027707-8027787 0.00044 11_[+2]_61 chrIV:14594325-14594405 0.00044 65_[+2]_7 chrIV:8535112-8535192 0.00044 48_[+2]_24 chrIII:1921417-1921497 0.00045 35_[+2]_37 chrV:14200260-14200340 0.0005 18_[+2]_54 chrII:9603545-9603625 0.0005 15_[+2]_57 chrII:13829798-13829878 0.0005 27_[+2]_45 chrX:5841247-5841327 0.00058 [+2]_72 chrV:9790047-9790127 0.00058 3_[+2]_69 chrX:13356506-13356586 0.00058 9_[+2]_63 chrX:806636-806716 0.00059 18_[+2]_54 chrX:1627119-1627199 0.00075 53_[+2]_19 chrM:859-939 0.00075 43_[+2]_29 chrII:9686911-9686991 0.00075 45_[+2]_27 chrI:10750062-10750142 0.00077 1_[+2]_71 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTTTCTCT MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF YTTTCTCT width=8 seqs=63 chrV:18967833-18967913 ( 14) CTTTCTCT 1 chrII:6589067-6589147 ( 42) CTTTCTCT 1 chrIII:7335377-7335457 ( 15) CTTTCTCT 1 chrIV:4020037-4020117 ( 14) CTTTCTCT 1 chrIII:6895295-6895375 ( 31) CTTTCTCT 1 chrI:8865726-8865806 ( 12) CTTTCTCT 1 chrIII:2090887-2090967 ( 23) CTTTCTCT 1 chrIII:7721044-7721124 ( 21) CTTTCTCT 1 chrX:6743023-6743103 ( 3) CTTTCTCT 1 chrI:2291257-2291337 ( 47) TTTTCTCT 1 chrIII:4649507-4649587 ( 55) TTTTCTCT 1 chrX:15276860-15276940 ( 29) TTTTCTCT 1 chrX:6737797-6737877 ( 69) TTTTCTCT 1 chrIV:7049709-7049789 ( 36) TTTTCTCT 1 chrV:13657511-13657591 ( 7) TTTTCTCT 1 chrV:6246689-6246769 ( 56) TTTTCTCT 1 chrI:6091829-6091909 ( 20) TTTTCTCT 1 chrII:5019519-5019599 ( 53) TTTTCTCT 1 chrM:3153-3233 ( 43) TTTTCTCT 1 chrV:20729113-20729193 ( 19) TTTTCTCT 1 chrIV:8043807-8043887 ( 38) TTTTCTCT 1 chrIII:6360303-6360383 ( 31) TTTTCTCT 1 chrV:5763985-5764065 ( 30) TTTTCTCT 1 chrIV:17278562-17278642 ( 20) CTCTCTCT 1 chrIII:1926537-1926617 ( 33) CTCTCTCT 1 chrI:10297992-10298072 ( 44) CTCTCTCT 1 chrII:5330278-5330358 ( 44) CTCTCTCT 1 chrIV:11491457-11491537 ( 40) CTCTCTCT 1 chrV:13081241-13081321 ( 57) CTCTCTCT 1 chrV:3644466-3644546 ( 7) CTCTCTCT 1 chrI:8787009-8787089 ( 22) TTCTCTCT 1 chrX:17513790-17513870 ( 50) TGTTCTCT 1 chrIII:12612585-12612665 ( 22) TGTTCTCT 1 chrIII:1925284-1925364 ( 17) TGTTCTCT 1 chrV:8655223-8655303 ( 15) TGTTCTCT 1 chrIII:7718502-7718582 ( 15) CATTCTCT 1 chrX:12425499-12425579 ( 62) CATTCTCT 1 chrII:6888427-6888507 ( 32) CTTTTTCT 1 chrIV:8949862-8949942 ( 73) CTTTTTCT 1 chrX:7809306-7809386 ( 48) CTTTTTCT 1 chrX:1344966-1345046 ( 12) TTTTCCCT 1 chrX:12363179-12363259 ( 23) TTTTCCCT 1 chrIV:6100005-6100085 ( 29) TTTTCCCT 1 chrIII:7153967-7154047 ( 28) CTATCTCT 1 chrII:6842795-6842875 ( 16) TCTTCTCT 1 chrII:7529282-7529362 ( 41) TTTTTTCT 1 chrM:12379-12459 ( 27) TTTTTTCT 1 chrII:12185906-12185986 ( 29) TCTTCTCT 1 chrV:8027707-8027787 ( 12) CTATCTCT 1 chrIV:14594325-14594405 ( 66) TTTTTTCT 1 chrIV:8535112-8535192 ( 49) TCTTCTCT 1 chrIII:1921417-1921497 ( 36) TGCTCTCT 1 chrV:14200260-14200340 ( 19) CACTCTCT 1 chrII:9603545-9603625 ( 16) CACTCTCT 1 chrII:13829798-13829878 ( 28) TTATCTCT 1 chrX:5841247-5841327 ( 1) CTCTTTCT 1 chrV:9790047-9790127 ( 4) TACTCTCT 1 chrX:13356506-13356586 ( 10) CTCTTTCT 1 chrX:806636-806716 ( 19) TTCTCCCT 1 chrX:1627119-1627199 ( 54) TTTTCTTT 1 chrM:859-939 ( 44) TTTTCTTT 1 chrII:9686911-9686991 ( 46) TTTTCTTT 1 chrI:10750062-10750142 ( 2) CTTTCTCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTTTCTCT MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.89709 E= 6.5e-006 -1262 112 -1262 82 -181 -210 -136 134 -254 22 -1262 118 -1262 -1262 -1262 167 -1262 209 -1262 -131 -1262 -169 -1262 158 -1262 222 -1262 -272 -1262 -1262 -368 165 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTTTCTCT MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 63 E= 6.5e-006 0.000000 0.444444 0.000000 0.555556 0.079365 0.047619 0.079365 0.793651 0.047619 0.238095 0.000000 0.714286 0.000000 0.000000 0.000000 1.000000 0.000000 0.873016 0.000000 0.126984 0.000000 0.063492 0.000000 0.936508 0.000000 0.952381 0.000000 0.047619 0.000000 0.000000 0.015873 0.984127 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTTTCTCT MEME-2 regular expression -------------------------------------------------------------------------------- [TC]T[TC]TCTCT -------------------------------------------------------------------------------- Time 9.97 secs. ******************************************************************************** ******************************************************************************** MOTIF CCACGTGR MEME-3 width = 8 sites = 30 llr = 260 E-value = 5.0e-003 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCACGTGR MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::a::2:5 pos.-specific C 6a:a:1:: probability G 2:::a1a3 matrix T 2::::6:2 bits 2.3 * ** * 2.1 * ** * 1.8 **** * 1.6 **** * Relative 1.4 **** * Entropy 1.1 **** * (12.5 bits) 0.9 **** * 0.7 ***** * 0.5 ***** ** 0.2 ******** 0.0 -------- Multilevel CCACGTGA consensus G A G sequence T T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCACGTGR MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIII:6421230-6421310 69 8.62e-06 TCTTTTGACA CCACGTGA CGAG chrIV:8949862-8949942 12 8.62e-06 TCTAACAACT CCACGTGA GACAGTTGAA chrX:8232078-8232158 25 8.62e-06 GACTCTGTTT CCACGTGA CTTTCTGCAA chrX:13528731-13528811 58 8.62e-06 CCGGGGTTTT CCACGTGA TAAAACTGTT chrII:12625819-12625899 68 8.62e-06 TGTTTGGTCG CCACGTGA TCTTG chrIII:9054006-9054086 66 1.49e-05 AACCAATCGA CCACGTGG AGGAGAC chrX:12872461-12872541 59 1.49e-05 CAACTGGGGG CCACGTGG GGGCCCCCGA chrV:13658719-13658799 41 1.49e-05 TTCTCCCATA CCACGTGG TGTTTCAGAC chrIV:11956469-11956549 25 1.49e-05 GATTAGAGAC CCACGTGG GTGAGAGTCG chrV:13081241-13081321 41 1.49e-05 GGTTAAATCT CCACGTGG CAACATTCCT chrV:9516478-9516558 12 2.25e-05 ATGCTGATGA CCACGAGA TCGGTCAATG chrIV:8530688-8530768 43 2.25e-05 GACATGAAAA CCACGAGA ACGCGAAGAA chrIII:7155810-7155890 71 3.79e-05 GAAAAGAACC CCACGCGA GG chrX:6750258-6750338 20 3.79e-05 AAACATAGAC CCACGTGT GGGTGCGTCC chrIV:1094322-1094402 26 5.76e-05 CGATTTGCCG CCACGGGA GATGTGGGGT chrV:13565317-13565397 32 5.76e-05 TTGTGTTCAG CCACGGGA AAATCAATCG chrI:315248-315328 37 8.11e-05 TTAAAAGGAT TCACGTGA TTTTCACGAC chrV:13657511-13657591 52 8.11e-05 GGAATCGGCA GCACGTGG TGGGGGAAGA chrI:8865505-8865585 10 9.48e-05 AAAATGGTG TCACGTGG TGTGGTCAGT chrX:17513790-17513870 17 1.17e-04 TGGAGAGAGA GCACGAGA CGCAGAGACA chrIII:7721044-7721124 39 1.17e-04 CCTCCAATCG CCACGCGT CTTTTGTGTC chrV:19212570-19212650 69 1.17e-04 AAGCGTCAAG GCACGAGA AGTG chrI:9626044-9626124 36 1.33e-04 TAGCGACTCG GCACGCGA CCGCAACGCA chrIII:3456397-3456477 46 1.33e-04 GCGCTCCACC GCACGTGT GTAAAACAAA chrV:18967833-18967913 28 1.39e-04 CTCTGCGTCT CCACGGGT TAGCCGTGGA chrI:13663308-13663388 39 1.62e-04 CATTTCACGC GCACGAGG CCGTGATAAA chrV:10858511-10858591 7 1.62e-04 GATGGG TCACGAGA CACCCTTTCA chrII:7152119-7152199 43 1.89e-04 ACGCAGCATT TCACGCGA AACGCGCCAG chrIII:7335377-7335457 34 1.89e-04 TTTTCACTTC TCACGTGT GCTAGACATG chrIII:7273066-7273146 5 1.89e-04 AAAA TCACGTGT TGGGTTGATG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCACGTGR MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:6421230-6421310 8.6e-06 68_[+3]_4 chrIV:8949862-8949942 8.6e-06 11_[+3]_61 chrX:8232078-8232158 8.6e-06 24_[+3]_48 chrX:13528731-13528811 8.6e-06 57_[+3]_15 chrII:12625819-12625899 8.6e-06 67_[+3]_5 chrIII:9054006-9054086 1.5e-05 65_[+3]_7 chrX:12872461-12872541 1.5e-05 58_[+3]_14 chrV:13658719-13658799 1.5e-05 40_[+3]_32 chrIV:11956469-11956549 1.5e-05 24_[+3]_48 chrV:13081241-13081321 1.5e-05 40_[+3]_32 chrV:9516478-9516558 2.3e-05 11_[+3]_61 chrIV:8530688-8530768 2.3e-05 42_[+3]_30 chrIII:7155810-7155890 3.8e-05 70_[+3]_2 chrX:6750258-6750338 3.8e-05 19_[+3]_53 chrIV:1094322-1094402 5.8e-05 25_[+3]_47 chrV:13565317-13565397 5.8e-05 31_[+3]_41 chrI:315248-315328 8.1e-05 36_[+3]_36 chrV:13657511-13657591 8.1e-05 51_[+3]_21 chrI:8865505-8865585 9.5e-05 9_[+3]_63 chrX:17513790-17513870 0.00012 16_[+3]_56 chrIII:7721044-7721124 0.00012 38_[+3]_34 chrV:19212570-19212650 0.00012 68_[+3]_4 chrI:9626044-9626124 0.00013 35_[+3]_37 chrIII:3456397-3456477 0.00013 45_[+3]_27 chrV:18967833-18967913 0.00014 27_[+3]_45 chrI:13663308-13663388 0.00016 38_[+3]_34 chrV:10858511-10858591 0.00016 6_[+3]_66 chrII:7152119-7152199 0.00019 42_[+3]_30 chrIII:7335377-7335457 0.00019 33_[+3]_39 chrIII:7273066-7273146 0.00019 4_[+3]_68 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCACGTGR MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCACGTGR width=8 seqs=30 chrIII:6421230-6421310 ( 69) CCACGTGA 1 chrIV:8949862-8949942 ( 12) CCACGTGA 1 chrX:8232078-8232158 ( 25) CCACGTGA 1 chrX:13528731-13528811 ( 58) CCACGTGA 1 chrII:12625819-12625899 ( 68) CCACGTGA 1 chrIII:9054006-9054086 ( 66) CCACGTGG 1 chrX:12872461-12872541 ( 59) CCACGTGG 1 chrV:13658719-13658799 ( 41) CCACGTGG 1 chrIV:11956469-11956549 ( 25) CCACGTGG 1 chrV:13081241-13081321 ( 41) CCACGTGG 1 chrV:9516478-9516558 ( 12) CCACGAGA 1 chrIV:8530688-8530768 ( 43) CCACGAGA 1 chrIII:7155810-7155890 ( 71) CCACGCGA 1 chrX:6750258-6750338 ( 20) CCACGTGT 1 chrIV:1094322-1094402 ( 26) CCACGGGA 1 chrV:13565317-13565397 ( 32) CCACGGGA 1 chrI:315248-315328 ( 37) TCACGTGA 1 chrV:13657511-13657591 ( 52) GCACGTGG 1 chrI:8865505-8865585 ( 10) TCACGTGG 1 chrX:17513790-17513870 ( 17) GCACGAGA 1 chrIII:7721044-7721124 ( 39) CCACGCGT 1 chrV:19212570-19212650 ( 69) GCACGAGA 1 chrI:9626044-9626124 ( 36) GCACGCGA 1 chrIII:3456397-3456477 ( 46) GCACGTGT 1 chrV:18967833-18967913 ( 28) CCACGGGT 1 chrI:13663308-13663388 ( 39) GCACGAGG 1 chrV:10858511-10858591 ( 7) TCACGAGA 1 chrII:7152119-7152199 ( 43) TCACGCGA 1 chrIII:7335377-7335457 ( 34) TCACGTGT 1 chrIII:7273066-7273146 ( 5) TCACGTGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCACGTGR MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.92146 E= 5.0e-003 -1155 155 -2 -65 -1155 229 -1155 -1155 185 -1155 -1155 -1155 -1155 229 -1155 -1155 -1155 -1155 230 -1155 -47 -62 -102 85 -1155 -1155 230 -1155 94 -1155 39 -65 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCACGTGR MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 30 E= 5.0e-003 0.000000 0.600000 0.200000 0.200000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.200000 0.133333 0.100000 0.566667 0.000000 0.000000 1.000000 0.000000 0.533333 0.000000 0.266667 0.200000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCACGTGR MEME-3 regular expression -------------------------------------------------------------------------------- [CGT]CACG[TA]G[AGT] -------------------------------------------------------------------------------- Time 13.42 secs. ******************************************************************************** ******************************************************************************** MOTIF TCTGCGTC MEME-4 width = 8 sites = 20 llr = 189 E-value = 1.3e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif TCTGCGTC MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C :9:3a:1a probability G 1::6:a:: matrix T 92a2::a: bits 2.3 ** * 2.1 ** * 1.8 ** * 1.6 ** ** * Relative 1.4 *** **** Entropy 1.1 *** **** (13.7 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TCTGCGTC consensus C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTGCGTC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIII:1926537-1926617 51 1.10e-05 CATCGTGCTC TCTGCGTC TCTCGAACCG chrIV:17249845-17249925 61 1.10e-05 CCAGCAGCTG TCTGCGTC AATGGAGCGC chrIV:2602127-2602207 49 1.10e-05 TCTTTGCCTG TCTGCGTC TCCTCCGTAG chrV:1743706-1743786 17 1.10e-05 ACGTTTTGTG TCTGCGTC TCTCATTGAT chrV:532151-532231 45 1.10e-05 TGCAATAGTG TCTGCGTC TCTCTTTTCA chrV:20729113-20729193 61 1.10e-05 CTATGCAATC TCTGCGTC TTCTACATTC chrIII:2090887-2090967 36 1.10e-05 TCTCTGAGTG TCTGCGTC TCTCACTGCC chrIV:15901293-15901373 28 1.10e-05 TCAAAAAATG TCTGCGTC TCACCAAATT chrX:15707600-15707680 64 2.21e-05 GTCGGTTGTC TCTCCGTC ACTATTATT chrIII:1925284-1925364 8 2.21e-05 TTCCAAG TCTCCGTC gtgttctctg chrX:6743946-6744026 24 2.21e-05 TCCGTATCTT TCTCCGTC AGATGATCGC chrX:806636-806716 55 4.62e-05 GGTGTTTGTT GCTGCGTC TCTTGTGTGG chrIII:12612585-12612665 13 4.62e-05 ATTCTCCTCT TCTTCGTC GTGTTCTCTG chrV:14200260-14200340 6 4.62e-05 TCGCA TCTTCGTC TCGCACACTC chrIII:6895295-6895375 44 4.62e-05 TCTCTGCGTC TCTTCGTC TTATATGATT chrII:6891993-6892073 42 4.62e-05 TTGGGATTTC GCTGCGTC AACTGTCGCA chrI:8813472-8813552 3 6.30e-05 CT TTTGCGTC GTGAGGTGTA chrV:18967833-18967913 5 6.30e-05 CACT TTTGCGTC ACTTTCTCTG chrX:16725081-16725161 2 9.44e-05 A TTTCCGTC TTCAAAACGA chrX:13528731-13528811 19 1.02e-04 ATAATCGGAG TCTCCGCC AGAAGGTTCG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTGCGTC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:1926537-1926617 1.1e-05 50_[+4]_22 chrIV:17249845-17249925 1.1e-05 60_[+4]_12 chrIV:2602127-2602207 1.1e-05 48_[+4]_24 chrV:1743706-1743786 1.1e-05 16_[+4]_56 chrV:532151-532231 1.1e-05 44_[+4]_28 chrV:20729113-20729193 1.1e-05 60_[+4]_12 chrIII:2090887-2090967 1.1e-05 35_[+4]_37 chrIV:15901293-15901373 1.1e-05 27_[+4]_45 chrX:15707600-15707680 2.2e-05 63_[+4]_9 chrIII:1925284-1925364 2.2e-05 7_[+4]_65 chrX:6743946-6744026 2.2e-05 23_[+4]_49 chrX:806636-806716 4.6e-05 54_[+4]_18 chrIII:12612585-12612665 4.6e-05 12_[+4]_60 chrV:14200260-14200340 4.6e-05 5_[+4]_67 chrIII:6895295-6895375 4.6e-05 43_[+4]_29 chrII:6891993-6892073 4.6e-05 41_[+4]_31 chrI:8813472-8813552 6.3e-05 2_[+4]_70 chrV:18967833-18967913 6.3e-05 4_[+4]_68 chrX:16725081-16725161 9.4e-05 1_[+4]_71 chrX:13528731-13528811 0.0001 18_[+4]_54 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTGCGTC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TCTGCGTC width=8 seqs=20 chrIII:1926537-1926617 ( 51) TCTGCGTC 1 chrIV:17249845-17249925 ( 61) TCTGCGTC 1 chrIV:2602127-2602207 ( 49) TCTGCGTC 1 chrV:1743706-1743786 ( 17) TCTGCGTC 1 chrV:532151-532231 ( 45) TCTGCGTC 1 chrV:20729113-20729193 ( 61) TCTGCGTC 1 chrIII:2090887-2090967 ( 36) TCTGCGTC 1 chrIV:15901293-15901373 ( 28) TCTGCGTC 1 chrX:15707600-15707680 ( 64) TCTCCGTC 1 chrIII:1925284-1925364 ( 8) TCTCCGTC 1 chrX:6743946-6744026 ( 24) TCTCCGTC 1 chrX:806636-806716 ( 55) GCTGCGTC 1 chrIII:12612585-12612665 ( 13) TCTTCGTC 1 chrV:14200260-14200340 ( 6) TCTTCGTC 1 chrIII:6895295-6895375 ( 44) TCTTCGTC 1 chrII:6891993-6892073 ( 42) GCTGCGTC 1 chrI:8813472-8813552 ( 3) TTTGCGTC 1 chrV:18967833-18967913 ( 5) TTTGCGTC 1 chrX:16725081-16725161 ( 2) TTTCCGTC 1 chrX:13528731-13528811 ( 19) TCTCCGCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTGCGTC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.7763 E= 1.3e-001 -1097 -1097 -102 152 -1097 205 -1097 -107 -1097 -1097 -1097 167 -1097 29 156 -107 -1097 229 -1097 -1097 -1097 -1097 230 -1097 -1097 -203 -1097 160 -1097 229 -1097 -1097 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTGCGTC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 20 E= 1.3e-001 0.000000 0.000000 0.100000 0.900000 0.000000 0.850000 0.000000 0.150000 0.000000 0.000000 0.000000 1.000000 0.000000 0.250000 0.600000 0.150000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.050000 0.000000 0.950000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTGCGTC MEME-4 regular expression -------------------------------------------------------------------------------- TCT[GC]CGTC -------------------------------------------------------------------------------- Time 16.78 secs. ******************************************************************************** ******************************************************************************** MOTIF GGAGCGCG MEME-5 width = 8 sites = 10 llr = 108 E-value = 7.9e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGAGCGCG MEME-5 Description -------------------------------------------------------------------------------- Simplified A ::9::::2 pos.-specific C ::::a:7: probability G aa:a:a:8 matrix T ::1:::3: bits 2.3 ** *** 2.1 ** *** 1.8 ** *** 1.6 ** *** Relative 1.4 ****** * Entropy 1.1 ******** (15.5 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GGAGCGCG consensus TA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAGCGCG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrV:16965844-16965924 28 4.03e-06 AAGGTGCAGT GGAGCGCG CTTGCACTCA chrV:18967833-18967913 43 4.03e-06 GGTTAGCCGT GGAGCGCG CTTGCATTGT chrIV:17249845-17249925 72 4.03e-06 CTGCGTCAAT GGAGCGCG C chrI:8816552-8816632 48 4.03e-06 AGAATTCGGT GGAGCGCG GTTGCAATTC chrIII:7854643-7854723 27 1.02e-05 CATACACCTA GGAGCGTG TTTTAGTGAA chrII:12678017-12678097 54 1.02e-05 TGTTATCAAT GGAGCGTG GTTGTTGCAG chrII:8561385-8561465 68 1.02e-05 GGCCGTCGAC GGAGCGTG TATGC chrIV:4750064-4750144 55 1.57e-05 GGGGAGCGGT GGAGCGCA CTTACTCCTT chrIII:1080720-1080800 10 1.57e-05 GAGAGCGAT GGAGCGCA CTTGCACTTG chrIV:17278562-17278642 12 2.03e-05 CTCAAAATGT GGTGCGCG CTCTCTCTCC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAGCGCG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:16965844-16965924 4e-06 27_[+5]_45 chrV:18967833-18967913 4e-06 42_[+5]_30 chrIV:17249845-17249925 4e-06 71_[+5]_1 chrI:8816552-8816632 4e-06 47_[+5]_25 chrIII:7854643-7854723 1e-05 26_[+5]_46 chrII:12678017-12678097 1e-05 53_[+5]_19 chrII:8561385-8561465 1e-05 67_[+5]_5 chrIV:4750064-4750144 1.6e-05 54_[+5]_18 chrIII:1080720-1080800 1.6e-05 9_[+5]_63 chrIV:17278562-17278642 2e-05 11_[+5]_61 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAGCGCG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGAGCGCG width=8 seqs=10 chrV:16965844-16965924 ( 28) GGAGCGCG 1 chrV:18967833-18967913 ( 43) GGAGCGCG 1 chrIV:17249845-17249925 ( 72) GGAGCGCG 1 chrI:8816552-8816632 ( 48) GGAGCGCG 1 chrIII:7854643-7854723 ( 27) GGAGCGTG 1 chrII:12678017-12678097 ( 54) GGAGCGTG 1 chrII:8561385-8561465 ( 68) GGAGCGTG 1 chrIV:4750064-4750144 ( 55) GGAGCGCA 1 chrIII:1080720-1080800 ( 10) GGAGCGCA 1 chrIV:17278562-17278642 ( 12) GGTGCGCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAGCGCG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.7767 E= 7.9e+000 -997 -997 230 -997 -997 -997 230 -997 170 -997 -997 -165 -997 -997 230 -997 -997 229 -997 -997 -997 -997 230 -997 -997 177 -997 -7 -47 -997 197 -997 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAGCGCG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 10 E= 7.9e+000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.900000 0.000000 0.000000 0.100000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.700000 0.000000 0.300000 0.200000 0.000000 0.800000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAGCGCG MEME-5 regular expression -------------------------------------------------------------------------------- GGAGCG[CT][GA] -------------------------------------------------------------------------------- Time 20.09 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:626306-626386 3.43e-01 80 chrIV:11097918-11097998 3.17e-01 80 chrM:13132-13212 9.78e-01 80 chrII:9686911-9686991 1.64e-01 80 chrV:8655223-8655303 1.18e-01 80 chrM:465-545 7.51e-01 80 chrIV:629341-629421 9.33e-01 80 chrX:12425499-12425579 2.57e-01 80 chrII:11836727-11836807 5.86e-01 80 chrM:10422-10502 7.59e-01 80 chrM:7877-7957 8.30e-01 80 chrM:7669-7749 9.98e-01 80 chrM:257-337 9.80e-01 80 chrM:1564-1644 6.85e-01 80 chrM:8569-8649 4.98e-01 80 chrI:8869209-8869289 8.62e-02 80 chrIV:10610080-10610160 1.79e-01 80 chrM:9677-9757 1.00e+00 80 chrIV:9376711-9376791 4.49e-01 80 chrV:1967099-1967179 3.87e-01 80 chrM:5746-5826 7.46e-01 80 chrV:5763985-5764065 1.38e-03 29_[+2(6.66e-05)]_43 chrM:3884-3964 9.72e-01 80 chrX:7990532-7990612 2.18e-01 80 chrIV:8535112-8535192 6.80e-02 80 chrM:13610-13690 1.00e+00 80 chrM:1766-1846 2.45e-01 80 chrM:11496-11576 9.84e-01 80 chrV:19212570-19212650 7.06e-02 80 chrII:848686-848766 3.91e-01 80 chrV:3644466-3644546 1.34e-02 6_[+2(8.37e-05)]_66 chrM:859-939 3.12e-01 80 chrII:4089374-4089454 1.08e-01 80 chrM:6951-7031 5.82e-01 80 chrX:16725081-16725161 5.16e-03 1_[+4(9.44e-05)]_71 chrI:8867572-8867652 1.25e-01 80 chrM:2918-2998 6.06e-02 19_[+1(6.06e-05)]_53 chrI:6574764-6574844 2.03e-01 80 chrII:12625819-12625899 1.28e-03 67_[+3(8.62e-06)]_5 chrIII:6360303-6360383 2.30e-02 30_[+2(6.66e-05)]_42 chrIV:8980003-8980083 6.25e-01 80 chrX:6743023-6743103 1.51e-02 2_[+2(2.63e-05)]_70 chrM:3656-3736 9.47e-01 80 chrII:5283007-5283087 6.63e-02 33_[+1(2.40e-05)]_39 chrIV:6100005-6100085 5.59e-02 80 chrM:6433-6513 1.00e+00 80 chrII:13829798-13829878 1.36e-01 80 chrII:5605555-5605635 3.72e-02 37_[+1(1.39e-05)]_35 chrV:13081241-13081321 5.09e-03 40_[+3(1.49e-05)]_8_[+2(8.37e-05)]_\ 16 chrIII:7718502-7718582 2.93e-02 80 chrII:9160279-9160359 2.60e-01 80 chrIV:14594325-14594405 8.29e-02 80 chrX:12422761-12422841 1.53e-01 80 chrM:2433-2513 8.55e-01 80 chrIII:7273066-7273146 1.54e-01 80 chrV:3391176-3391256 1.69e-02 63_[+1(6.06e-05)]_9 chrX:7809306-7809386 3.02e-01 80 chrI:10752095-10752175 4.73e-02 80 chrIV:15901293-15901373 7.03e-03 27_[+4(1.10e-05)]_45 chrIV:5216553-5216633 1.24e-01 80 chrIII:7721044-7721124 4.79e-04 20_[+2(2.63e-05)]_52 chrII:12042667-12042747 6.47e-01 80 chrX:12451443-12451523 3.89e-01 80 chrIV:10855355-10855435 4.69e-01 80 chrX:12523207-12523287 6.67e-01 80 chrI:8344535-8344615 3.97e-01 80 chrIV:8530688-8530768 7.31e-03 42_[+3(2.25e-05)]_30 chrI:10750062-10750142 2.81e-01 80 chrII:9128412-9128492 1.48e-01 80 chrM:8333-8413 9.84e-01 80 chrIV:13318902-13318982 6.23e-01 80 chrV:11616067-11616147 9.38e-02 80 chrM:10969-11049 9.76e-01 80 chrI:7661085-7661165 4.83e-01 80 chrX:13356506-13356586 3.67e-02 24_[+1(6.06e-05)]_48 chrX:17063996-17064076 6.51e-02 80 chrIII:2090887-2090967 2.36e-03 6_[+2(6.66e-05)]_8_[+2(2.63e-05)]_5_\ [+4(1.10e-05)]_37 chrM:2020-2100 8.66e-01 80 chrM:9087-9167 9.12e-01 80 chrV:14510933-14511013 3.94e-01 80 chrIII:5443003-5443083 7.62e-01 80 chrV:9095713-9095793 6.21e-02 50_[+1(1.39e-05)]_22 chrI:5025662-5025742 5.00e-01 80 chrV:11617240-11617320 6.91e-01 80 chrIV:8527759-8527839 6.40e-01 80 chrII:14798303-14798383 3.35e-01 80 chrX:13528731-13528811 1.81e-03 57_[+3(8.62e-06)]_15 chrI:7659049-7659129 4.81e-01 80 chrIV:11491457-11491537 8.91e-04 1_[+1(1.39e-05)]_28_[+2(8.37e-05)]_\ 6_[+1(8.85e-05)]_21 chrIV:8043807-8043887 6.43e-03 37_[+2(6.66e-05)]_35 chrV:8027707-8027787 1.67e-01 80 chrI:8865505-8865585 6.90e-03 9_[+3(9.48e-05)]_17_[+1(6.06e-05)]_\ 1_[+1(6.06e-05)]_29 chrIV:5591348-5591428 9.31e-01 80 chrIV:14612806-14612886 1.67e-01 80 chrV:20729113-20729193 5.35e-04 23_[+4(1.10e-05)]_29_[+4(1.10e-05)]_\ 12 chrII:12185906-12185986 5.00e-02 80 chrII:6891993-6892073 7.39e-03 41_[+4(4.62e-05)]_31 chrM:3153-3233 1.49e-01 42_[+2(6.66e-05)]_30 chrV:10951866-10951946 2.01e-01 80 chrM:7155-7235 5.07e-01 80 chrV:532151-532231 1.24e-02 44_[+4(1.10e-05)]_28 chrM:4708-4788 8.32e-01 80 chrM:12379-12459 2.76e-01 80 chrX:8475290-8475370 2.85e-02 80 chrM:6197-6277 6.78e-01 80 chrIII:10337583-10337663 1.50e-02 80 chrIII:7723902-7723982 3.03e-01 80 chrX:6254451-6254531 1.37e-01 80 chrV:13565317-13565397 2.81e-02 31_[+3(5.76e-05)]_41 chrIII:5943946-5944026 3.76e-01 80 chrM:2222-2302 9.88e-01 80 chrX:15607694-15607774 2.96e-01 80 chrV:9516478-9516558 1.02e-01 11_[+3(2.25e-05)]_61 chrIV:6839158-6839238 1.37e-01 56_[+1(6.06e-05)]_16 chrI:8865726-8865806 6.98e-04 11_[+2(2.63e-05)]_61 chrX:7181753-7181833 1.50e-01 2_[+1(8.85e-05)]_70 chrX:10771089-10771169 5.30e-01 80 chrX:1389511-1389591 2.48e-01 80 chrX:14707039-14707119 9.29e-01 80 chrII:5019519-5019599 1.98e-01 52_[+2(6.66e-05)]_20 chrII:7529282-7529362 3.97e-02 80 chrIV:11956469-11956549 3.22e-02 24_[+3(1.49e-05)]_48 chrV:13658719-13658799 2.22e-02 40_[+3(1.49e-05)]_9_[+3(6.17e-05)]_\ 15 chrI:6091829-6091909 5.80e-02 19_[+2(6.66e-05)]_53 chrV:18346218-18346298 6.53e-02 80 chrII:6849391-6849471 4.33e-01 80 chrV:6246689-6246769 2.88e-02 55_[+2(6.66e-05)]_17 chrM:12604-12684 9.91e-01 80 chrV:13657511-13657591 2.61e-03 6_[+2(6.66e-05)]_37_[+3(8.11e-05)]_\ 21 chrX:8232078-8232158 6.04e-03 24_[+3(8.62e-06)]_48 chrII:6842795-6842875 1.18e-01 80 chrII:8016967-8017047 6.86e-01 80 chrX:12872461-12872541 4.58e-03 58_[+3(1.49e-05)]_14 chrX:2364813-2364893 2.01e-01 80 chrV:5780876-5780956 8.35e-03 80 chrV:1743706-1743786 9.53e-03 16_[+4(1.10e-05)]_56 chrV:11572961-11573041 1.48e-01 80 chrIII:6895295-6895375 2.49e-04 35_[+4(1.10e-05)]_[+4(4.62e-05)]_29 chrIV:8949862-8949942 1.74e-03 11_[+3(8.62e-06)]_61 chrV:7093943-7094023 2.46e-02 62_[+1(8.85e-05)]_10 chrIV:13919401-13919481 7.23e-01 80 chrII:7337562-7337642 1.02e-01 80 chrV:11886104-11886184 1.92e-01 80 chrIV:7049709-7049789 2.52e-01 35_[+2(6.66e-05)]_37 chrII:9603545-9603625 1.09e-03 60_[+1(1.39e-05)]_12 chrIII:3279375-3279455 1.76e-01 31_[+1(6.06e-05)]_41 chrX:14560420-14560500 3.20e-02 80 chrII:5337065-5337145 9.10e-02 80 chrII:6888427-6888507 1.98e-01 80 chrX:14169763-14169843 1.60e-03 49_[+1(1.39e-05)]_23 chrX:10772244-10772324 6.71e-01 80 chrII:10552121-10552201 7.90e-02 80 chrI:8426852-8426932 1.86e-01 80 chrIV:2602127-2602207 1.65e-02 19_[+4(1.10e-05)]_21_[+4(1.10e-05)]_\ 24 chrII:5330278-5330358 4.32e-02 43_[+2(8.37e-05)]_29 chrX:6743946-6744026 7.68e-03 23_[+4(2.21e-05)]_49 chrX:12501016-12501096 3.15e-01 80 chrI:8816552-8816632 2.08e-02 47_[+5(4.03e-06)]_25 chrIV:11149791-11149871 8.65e-01 80 chrX:6737797-6737877 5.24e-03 68_[+2(6.66e-05)]_4 chrX:8550309-8550389 2.31e-01 65_[+1(3.42e-05)]_7 chrX:6750258-6750338 5.19e-04 19_[+3(3.79e-05)]_53 chrV:10858511-10858591 2.21e-02 80 chrI:10297992-10298072 4.30e-04 43_[+2(8.37e-05)]_19_[+1(1.39e-05)]_\ 2 chrIII:4195350-4195430 7.01e-01 80 chrI:7595652-7595732 8.25e-03 80 chrIV:3160900-3160980 7.69e-02 1_[+1(6.06e-05)]_71 chrV:9790047-9790127 1.57e-01 80 chrII:6346843-6346923 5.30e-01 80 chrV:6229560-6229640 7.71e-03 26_[+1(6.06e-05)]_46 chrI:315248-315328 2.01e-01 36_[+3(8.11e-05)]_36 chrI:8787009-8787089 2.12e-02 80 chrIII:7153967-7154047 2.51e-01 80 chrX:15276860-15276940 3.16e-03 28_[+2(6.66e-05)]_44 chrV:14055185-14055265 1.42e-02 80 chrIII:6421230-6421310 2.20e-03 68_[+3(8.62e-06)]_4 chrV:14200260-14200340 4.86e-03 5_[+4(4.62e-05)]_67 chrX:12363179-12363259 1.75e-01 80 chrI:7079568-7079648 1.61e-01 63_[+1(2.40e-05)]_9 chrIV:4020037-4020117 6.16e-03 13_[+2(2.63e-05)]_59 chrX:16056518-16056598 3.35e-01 80 chrX:13514534-13514614 9.89e-01 80 chrII:8747394-8747474 2.08e-01 80 chrIII:1925284-1925364 2.05e-03 7_[+4(2.21e-05)]_65 chrV:9546994-9547074 2.52e-01 80 chrIV:6790599-6790679 5.04e-02 80 chrX:1344966-1345046 8.38e-02 80 chrIII:8447137-8447217 1.22e-01 80 chrV:8936263-8936343 3.96e-01 80 chrII:12102514-12102594 4.65e-02 57_[+1(1.39e-05)]_15 chrIII:9054006-9054086 1.37e-02 65_[+3(1.49e-05)]_7 chrIII:7155810-7155890 2.89e-02 70_[+3(3.79e-05)]_2 chrX:15707600-15707680 5.33e-04 63_[+4(2.21e-05)]_9 chrIII:3456397-3456477 2.22e-02 80 chrV:20778404-20778484 1.05e-01 80 chrI:9381788-9381868 2.89e-01 80 chrIII:7335377-7335457 5.34e-04 14_[+2(2.63e-05)]_58 chrIII:12612585-12612665 1.02e-02 12_[+4(4.62e-05)]_60 chrII:2974051-2974131 8.32e-03 67_[+1(6.06e-05)]_5 chrIV:4049712-4049792 6.25e-01 80 chrX:16682086-16682166 5.34e-01 80 chrIII:5679099-5679179 2.55e-01 80 chrIII:9051446-9051526 1.92e-01 72_[+1(6.06e-05)] chrIV:17249845-17249925 1.27e-04 60_[+4(1.10e-05)]_3_[+5(4.03e-06)]_\ 1 chrIII:4649507-4649587 1.71e-02 54_[+2(6.66e-05)]_18 chrX:9958704-9958784 2.86e-01 80 chrX:5841247-5841327 1.40e-01 80 chrIII:4899882-4899962 1.25e-01 80 chrX:17513790-17513870 3.07e-04 80 chrIV:5657246-5657326 1.05e-01 80 chrIII:1080720-1080800 3.12e-02 9_[+5(1.57e-05)]_63 chrII:6589067-6589147 3.95e-02 41_[+2(2.63e-05)]_31 chrX:9465783-9465863 5.90e-01 80 chrIII:1926537-1926617 5.18e-03 28_[+2(8.37e-05)]_14_[+4(1.10e-05)]_\ 22 chrII:8561385-8561465 7.34e-03 67_[+5(1.02e-05)]_5 chrI:2291257-2291337 1.09e-02 46_[+2(6.66e-05)]_26 chrII:7152119-7152199 2.59e-02 80 chrIII:833833-833913 2.34e-01 80 chrV:14685734-14685814 1.51e-01 80 chrX:5429499-5429579 1.31e-01 80 chrV:12343666-12343746 2.70e-01 80 chrV:6000435-6000515 4.13e-02 80 chrV:18967833-18967913 8.64e-09 4_[+4(6.30e-05)]_6_[+4(1.10e-05)]_\ 16_[+5(4.03e-06)]_30 chrIII:12905163-12905243 6.33e-01 80 chrX:1627119-1627199 1.14e-01 80 chrI:535381-535461 2.12e-01 80 chrIII:13643656-13643736 7.98e-03 80 chrV:16965844-16965924 7.82e-05 13_[+1(3.42e-05)]_6_[+5(4.03e-06)]_\ 45 chrX:806636-806716 1.71e-02 54_[+4(4.62e-05)]_18 chrII:12678017-12678097 2.41e-02 53_[+5(1.02e-05)]_19 chrX:13700783-13700863 9.61e-01 80 chrII:1320570-1320650 2.81e-01 80 chrX:11937498-11937578 8.02e-01 80 chrIII:1921417-1921497 1.47e-01 80 chrI:13663308-13663388 7.74e-03 80 chrX:15353988-15354068 3.57e-03 35_[+1(1.39e-05)]_37 chrIV:17278562-17278642 1.66e-04 11_[+5(2.03e-05)]_[+2(8.37e-05)]_53 chrIV:654887-654967 6.77e-01 80 chrIV:4750064-4750144 5.41e-03 54_[+5(1.57e-05)]_18 chrII:6348552-6348632 2.33e-01 80 chrII:10563536-10563616 1.33e-01 80 chrIII:6972049-6972129 5.80e-02 80 chrI:536848-536928 8.49e-01 80 chrIII:7854643-7854723 7.57e-02 26_[+5(1.02e-05)]_46 chrI:9626044-9626124 1.43e-02 80 chrIV:1094322-1094402 9.81e-02 25_[+3(5.76e-05)]_47 chrI:4699433-4699513 1.17e-01 80 chrI:8813472-8813552 4.00e-03 2_[+4(6.30e-05)]_70 chrX:11094152-11094232 5.18e-01 80 chrIII:3867544-3867624 3.21e-01 80 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n08.farnam.hpc.yale.internal ********************************************************************************