******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/worm/fasta/RankLinear2.0_40/nhr-71.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrIII:6871219-6871299 1.0000 80 chrI:9739491-9739571 1.0000 80 chrI:5389113-5389193 1.0000 80 chrIII:6398277-6398357 1.0000 80 chrX:3021629-3021709 1.0000 80 chrIV:14606596-14606676 1.0000 80 chrX:4075231-4075311 1.0000 80 chrX:8764200-8764280 1.0000 80 chrIV:8975087-8975167 1.0000 80 chrX:6020218-6020298 1.0000 80 chrIV:10251472-10251552 1.0000 80 chrV:13473652-13473732 1.0000 80 chrII:8959348-8959428 1.0000 80 chrIV:9063671-9063751 1.0000 80 chrX:13555266-13555346 1.0000 80 chrX:6205044-6205124 1.0000 80 chrIV:11350934-11351014 1.0000 80 chrIV:6514861-6514941 1.0000 80 chrIII:10816182-10816262 1.0000 80 chrIV:11068437-11068517 1.0000 80 chrIV:8605375-8605455 1.0000 80 chrV:3870517-3870597 1.0000 80 chrV:12636443-12636523 1.0000 80 chrX:4131521-4131601 1.0000 80 chrIV:3026054-3026134 1.0000 80 chrIV:15673226-15673306 1.0000 80 chrV:1481004-1481084 1.0000 80 chrIV:3656019-3656099 1.0000 80 chrX:12873760-12873840 1.0000 80 chrI:4792577-4792657 1.0000 80 chrII:9010459-9010539 1.0000 80 chrV:20402965-20403045 1.0000 80 chrIII:4412248-4412328 1.0000 80 chrX:13341106-13341186 1.0000 80 chrIV:9725639-9725719 1.0000 80 chrIV:11938715-11938795 1.0000 80 chrIII:6402470-6402550 1.0000 80 chrV:6505562-6505642 1.0000 80 chrX:2348116-2348196 1.0000 80 chrV:4794438-4794518 1.0000 80 chrX:9248201-9248281 1.0000 80 chrIV:15814202-15814282 1.0000 80 chrX:14287985-14288065 1.0000 80 chrII:10300519-10300599 1.0000 80 chrX:8481752-8481832 1.0000 80 chrIII:6360278-6360358 1.0000 80 chrV:18581890-18581970 1.0000 80 chrIII:10035940-10036020 1.0000 80 chrX:13744854-13744934 1.0000 80 chrIV:11649157-11649237 1.0000 80 chrX:12870166-12870246 1.0000 80 chrV:6630931-6631011 1.0000 80 chrII:6290440-6290520 1.0000 80 chrIII:6988226-6988306 1.0000 80 chrV:3344145-3344225 1.0000 80 chrIII:4731427-4731507 1.0000 80 chrIII:13716410-13716490 1.0000 80 chrV:12518888-12518968 1.0000 80 chrX:1536298-1536378 1.0000 80 chrX:13739401-13739481 1.0000 80 chrIII:8122118-8122198 1.0000 80 chrX:9956724-9956804 1.0000 80 chrIII:9753000-9753080 1.0000 80 chrV:618075-618155 1.0000 80 chrI:9701928-9702008 1.0000 80 chrX:12516595-12516675 1.0000 80 chrV:9260565-9260645 1.0000 80 chrX:6639775-6639855 1.0000 80 chrII:7323463-7323543 1.0000 80 chrX:13337208-13337288 1.0000 80 chrIV:3647704-3647784 1.0000 80 chrIV:9928632-9928712 1.0000 80 chrIII:11942829-11942909 1.0000 80 chrX:12990913-12990993 1.0000 80 chrV:10465627-10465707 1.0000 80 chrX:6741125-6741205 1.0000 80 chrIII:1622527-1622607 1.0000 80 chrI:7374833-7374913 1.0000 80 chrII:7836779-7836859 1.0000 80 chrV:8212132-8212212 1.0000 80 chrIII:7217220-7217300 1.0000 80 chrIV:16658903-16658983 1.0000 80 chrV:2615408-2615488 1.0000 80 chrX:16732412-16732492 1.0000 80 chrII:9117887-9117967 1.0000 80 chrX:13317696-13317776 1.0000 80 chrX:7524039-7524119 1.0000 80 chrIII:9620368-9620448 1.0000 80 chrX:15600189-15600269 1.0000 80 chrX:14562447-14562527 1.0000 80 chrIII:4113782-4113862 1.0000 80 chrIV:740851-740931 1.0000 80 chrV:9128755-9128835 1.0000 80 chrV:12635395-12635475 1.0000 80 chrV:3874503-3874583 1.0000 80 chrX:7236885-7236965 1.0000 80 chrX:13106605-13106685 1.0000 80 chrI:14865036-14865116 1.0000 80 chrV:7822745-7822825 1.0000 80 chrX:16534670-16534750 1.0000 80 chrIII:482894-482974 1.0000 80 chrII:4494668-4494748 1.0000 80 chrX:4957470-4957550 1.0000 80 chrIV:3030033-3030113 1.0000 80 chrI:7759189-7759269 1.0000 80 chrX:6826012-6826092 1.0000 80 chrIII:6898695-6898775 1.0000 80 chrI:6166797-6166877 1.0000 80 chrX:6410510-6410590 1.0000 80 chrX:4219642-4219722 1.0000 80 chrIV:14621332-14621412 1.0000 80 chrII:11596467-11596547 1.0000 80 chrX:7715629-7715709 1.0000 80 chrII:8707210-8707290 1.0000 80 chrX:10853440-10853520 1.0000 80 chrIII:4687290-4687370 1.0000 80 chrX:16525768-16525848 1.0000 80 chrX:1051186-1051266 1.0000 80 chrI:11940133-11940213 1.0000 80 chrX:3108735-3108815 1.0000 80 chrX:15338346-15338426 1.0000 80 chrX:2819063-2819143 1.0000 80 chrI:4020649-4020729 1.0000 80 chrIV:5778463-5778543 1.0000 80 chrI:10074889-10074969 1.0000 80 chrI:6001209-6001289 1.0000 80 chrIV:6751344-6751424 1.0000 80 chrV:11803593-11803673 1.0000 80 chrX:12878113-12878193 1.0000 80 chrX:12669094-12669174 1.0000 80 chrIV:1623917-1623997 1.0000 80 chrIV:9053547-9053627 1.0000 80 chrIV:1105259-1105339 1.0000 80 chrIV:2734834-2734914 1.0000 80 chrIV:11064104-11064184 1.0000 80 chrX:14566200-14566280 1.0000 80 chrII:7907767-7907847 1.0000 80 chrII:7339185-7339265 1.0000 80 chrII:5572246-5572326 1.0000 80 chrI:7381107-7381187 1.0000 80 chrII:5698410-5698490 1.0000 80 chrV:13346043-13346123 1.0000 80 chrX:6202960-6203040 1.0000 80 chrIII:1682408-1682488 1.0000 80 chrV:3856082-3856162 1.0000 80 chrX:17421935-17422015 1.0000 80 chrX:8786854-8786934 1.0000 80 chrX:3837918-3837998 1.0000 80 chrI:9685303-9685383 1.0000 80 chrII:7977651-7977731 1.0000 80 chrIV:1108172-1108252 1.0000 80 chrIV:11777245-11777325 1.0000 80 chrII:5932507-5932587 1.0000 80 chrV:11822635-11822715 1.0000 80 chrII:9115790-9115870 1.0000 80 chrIV:8476342-8476422 1.0000 80 chrII:7090306-7090386 1.0000 80 chrII:6028755-6028835 1.0000 80 chrX:2075283-2075363 1.0000 80 chrII:11713666-11713746 1.0000 80 chrII:12622319-12622399 1.0000 80 chrX:2316347-2316427 1.0000 80 chrX:16815698-16815778 1.0000 80 chrII:7640307-7640387 1.0000 80 chrI:548076-548156 1.0000 80 chrII:10557426-10557506 1.0000 80 chrIII:4283317-4283397 1.0000 80 chrI:4941209-4941289 1.0000 80 chrIV:4402554-4402634 1.0000 80 chrV:10891111-10891191 1.0000 80 chrII:12996386-12996466 1.0000 80 chrX:7987096-7987176 1.0000 80 chrV:10727804-10727884 1.0000 80 chrX:10333484-10333564 1.0000 80 chrV:14847442-14847522 1.0000 80 chrII:9262268-9262348 1.0000 80 chrIII:6405320-6405400 1.0000 80 chrX:3839370-3839450 1.0000 80 chrX:9638991-9639071 1.0000 80 chrV:6323131-6323211 1.0000 80 chrI:1695179-1695259 1.0000 80 chrIV:12012606-12012686 1.0000 80 chrII:15194065-15194145 1.0000 80 chrIV:14622237-14622317 1.0000 80 chrIV:8028470-8028550 1.0000 80 chrI:12164756-12164836 1.0000 80 chrIII:9742167-9742247 1.0000 80 chrIV:4024743-4024823 1.0000 80 chrX:15073025-15073105 1.0000 80 chrIII:10817100-10817180 1.0000 80 chrIV:13880953-13881033 1.0000 80 chrX:5942315-5942395 1.0000 80 chrV:15564162-15564242 1.0000 80 chrII:6891996-6892076 1.0000 80 chrIV:746517-746597 1.0000 80 chrIV:8947327-8947407 1.0000 80 chrV:6768659-6768739 1.0000 80 chrV:7894113-7894193 1.0000 80 chrX:11379491-11379571 1.0000 80 chrV:728066-728146 1.0000 80 chrV:13788096-13788176 1.0000 80 chrX:17043118-17043198 1.0000 80 chrI:6437521-6437601 1.0000 80 chrX:16361192-16361272 1.0000 80 chrII:10446427-10446507 1.0000 80 chrV:8662350-8662430 1.0000 80 chrV:11082603-11082683 1.0000 80 chrIII:10155178-10155258 1.0000 80 chrIII:6362518-6362598 1.0000 80 chrX:5387772-5387852 1.0000 80 chrIV:2773564-2773644 1.0000 80 chrI:4908221-4908301 1.0000 80 chrIV:7242557-7242637 1.0000 80 chrX:5209553-5209633 1.0000 80 chrIII:5500928-5501008 1.0000 80 chrIII:4317183-4317263 1.0000 80 chrX:13113593-13113673 1.0000 80 chrV:11309135-11309215 1.0000 80 chrV:10937472-10937552 1.0000 80 chrX:14786902-14786982 1.0000 80 chrX:8053273-8053353 1.0000 80 chrIV:11636480-11636560 1.0000 80 chrII:9481601-9481681 1.0000 80 chrI:2668706-2668786 1.0000 80 chrV:11798494-11798574 1.0000 80 chrIV:8036633-8036713 1.0000 80 chrI:8787788-8787868 1.0000 80 chrI:5599532-5599612 1.0000 80 chrI:5400311-5400391 1.0000 80 chrX:12200717-12200797 1.0000 80 chrII:4518452-4518532 1.0000 80 chrI:5130912-5130992 1.0000 80 chrV:11080528-11080608 1.0000 80 chrV:729296-729376 1.0000 80 chrII:8813812-8813892 1.0000 80 chrIV:1761746-1761826 1.0000 80 chrI:5997612-5997692 1.0000 80 chrIV:16169884-16169964 1.0000 80 chrX:6591849-6591929 1.0000 80 chrX:2802939-2803019 1.0000 80 chrV:3979979-3980059 1.0000 80 chrI:9095697-9095777 1.0000 80 chrIII:7115084-7115164 1.0000 80 chrIV:7047096-7047176 1.0000 80 chrI:4030695-4030775 1.0000 80 chrX:13539902-13539982 1.0000 80 chrIII:6352609-6352689 1.0000 80 chrX:5837117-5837197 1.0000 80 chrII:8128413-8128493 1.0000 80 chrIII:96337-96417 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/worm/inference_raw/MEME/RankLinear2.0_40_nhr-71/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/worm/fasta/RankLinear2.0_40/nhr-71.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.281 C 0.213 G 0.207 T 0.3 Background letter frequencies (from file dataset with add-one prior applied): A 0.281 C 0.213 G 0.207 T 0.3 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GAGARAGA MEME-1 width = 8 sites = 48 llr = 401 E-value = 5.7e-016 ******************************************************************************** -------------------------------------------------------------------------------- Motif GAGARAGA MEME-1 Description -------------------------------------------------------------------------------- Simplified A :8:a4839 pos.-specific C :::::::: probability G a:a:6371 matrix T :2:::::1 bits 2.3 * 2.0 * * 1.8 * ** 1.6 * ** Relative 1.4 * ** Entropy 1.1 ******** (12.1 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GAGAGAGA consensus AGA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGARAGA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIII:96337-96417 62 1.14e-05 AAGAGATATG GAGAGAGA TAGGAGACGC chrI:5599532-5599612 34 1.14e-05 GTGTGAAAGT GAGAGAGA GACACAGTGA chrV:728066-728146 51 1.14e-05 ATCATTAGGA GAGAGAGA CAATTGATGA chrII:15194065-15194145 59 1.14e-05 gagagagaga gagagaga gagGGGAGTC chrI:11940133-11940213 51 1.14e-05 GCGTGCGCAA GAGAGAGA CAGAGAAACA chrIV:16658903-16658983 56 1.14e-05 GTGAGGCACA GAGAGAGA GAGCACTGGA chrV:20402965-20403045 23 1.14e-05 GAGAATGAGG GAGAGAGA TTCAGAGAAA chrV:3979979-3980059 50 3.54e-05 GTTGGAGTGA GAGAGGGA GAAGAAGGAA chrI:5997612-5997692 50 3.54e-05 GAGTTGAACA GAGAGGGA GAAGCTTTAG chrV:11082603-11082683 64 3.54e-05 CTCGTCTCTC GAGAAAGA AAGCACACA chrX:5942315-5942395 72 3.54e-05 aaaaacaagc gagaggga a chrIV:14622237-14622317 46 3.54e-05 GAACCAGTGA GAGAGGGA AAATTCTGAT chrII:7090306-7090386 37 3.54e-05 GACAGCGTGC GAGAAAGA GAGACGCAGG chrII:5932507-5932587 58 3.54e-05 AGTGATAAGA GAGAAAGA AGCATCCGAC chrV:3856082-3856162 49 3.54e-05 TTGTACTTCT GAGAAAGA CATAAATCAC chrI:4020649-4020729 68 3.54e-05 CCGTCTTCCC GAGAGGGA GAGCA chrI:7759189-7759269 11 3.54e-05 TATTAAGCAA GAGAGGGA GACAATTCTC chrX:13337208-13337288 63 3.54e-05 CAAAACAATT GAGAAAGA CGGAGGAGAG chrI:9701928-9702008 34 3.54e-05 AAGAGATTTA GAGAAAGA AACGAAATTG chrIII:6360278-6360358 26 3.54e-05 TAGAGAGAAA GAGAAAGA ATCTGGCACC chrIV:8947327-8947407 41 5.10e-05 TGGAAAAAAA GAGAGAAA GTGGATAATT chrI:12164756-12164836 65 5.10e-05 AAGAAACACA GAGAGAAA ATTGGAGA chrII:8707210-8707290 63 5.10e-05 AAGAAGATCC GAGAGAAA CAGCTCCAAT chrIV:12012606-12012686 18 6.32e-05 ACGGCATCGA GTGAGAGA GTGTTGAAGA chrII:9262268-9262348 73 6.32e-05 AACAGAGAGG GTGAGAGA chrI:6001209-6001289 61 6.32e-05 TCTGGAACCA GTGAGAGA TAAGCTTTTT chrIII:9753000-9753080 19 6.32e-05 GACGCAGACA GTGAGAGA TATACGAACG chrII:9010459-9010539 58 6.32e-05 AAGGAGTGAC GTGAGAGA AGAATTCAAG chrX:15338346-15338426 66 1.07e-04 ATCGCAACAA GAGAAAAA CGGGGGA chrX:16534670-16534750 13 1.07e-04 GAGAGGTTGC GAGAAAAA GATATGGGAA chrV:3874503-3874583 64 1.07e-04 CAACTATTCC GAGAAAAA AGAATTCAA chrX:13317696-13317776 52 1.07e-04 TTCATTTTTC GAGAAAAA AGATATCCGT chrX:12870166-12870246 1 1.07e-04 . GAGAAAAA TGGACGGATA chrX:13555266-13555346 72 1.07e-04 AGACAAAAGT GAGAAAAA G chrX:3837918-3837998 17 1.33e-04 CAAAGAAGAC GTGAGGGA TGGCGCGAAG chrIV:11649157-11649237 20 1.33e-04 CATGATCTCT GTGAGGGA GAACCCTTCA chrII:12996386-12996466 31 1.41e-04 TGGAATGGAG GAGAGAGG AGAGACGCAG chrII:7640307-7640387 39 1.58e-04 TGCGGCGCCT GTGAGAAA ACAGCATCCG chrI:4030695-4030775 61 1.86e-04 AATAATGGGT GAGAAGAA GCAGGAGCAC chrV:10727804-10727884 3 1.86e-04 TG GAGAAGAA GTGGTGAAAA chrIII:1682408-1682488 1 1.86e-04 . GAGAGAGT ATGGGTAGGC chrX:14562447-14562527 71 1.86e-04 GACGCCATTG GAGAAGAA AG chrV:2615408-2615488 58 1.86e-04 GCAACTATAT GAGAGAGT CAGGGAATGG chrIV:1105259-1105339 57 2.15e-04 AGCTGTCGTT GAGAGGGG TCACCCCGAG chrIV:6751344-6751424 62 2.50e-04 GCAAAGAAAA GTGAAAAA ACATTCGAGA chrX:5837117-5837197 45 2.87e-04 CCTCATTTCC GAGAAAGT TTTTCTTGAT chrIV:11777245-11777325 64 2.87e-04 CACAAAAACG GAGAGAAG AGTGCAGTA chrX:8053273-8053353 25 3.25e-04 CCAGAGAAAA CAGAGAGA CAGAGTCGAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGARAGA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:96337-96417 1.1e-05 61_[+1]_11 chrI:5599532-5599612 1.1e-05 33_[+1]_39 chrV:728066-728146 1.1e-05 50_[+1]_22 chrII:15194065-15194145 1.1e-05 58_[+1]_14 chrI:11940133-11940213 1.1e-05 50_[+1]_22 chrIV:16658903-16658983 1.1e-05 55_[+1]_17 chrV:20402965-20403045 1.1e-05 22_[+1]_50 chrV:3979979-3980059 3.5e-05 49_[+1]_23 chrI:5997612-5997692 3.5e-05 49_[+1]_23 chrV:11082603-11082683 3.5e-05 63_[+1]_9 chrX:5942315-5942395 3.5e-05 71_[+1]_1 chrIV:14622237-14622317 3.5e-05 45_[+1]_27 chrII:7090306-7090386 3.5e-05 36_[+1]_36 chrII:5932507-5932587 3.5e-05 57_[+1]_15 chrV:3856082-3856162 3.5e-05 48_[+1]_24 chrI:4020649-4020729 3.5e-05 67_[+1]_5 chrI:7759189-7759269 3.5e-05 10_[+1]_62 chrX:13337208-13337288 3.5e-05 62_[+1]_10 chrI:9701928-9702008 3.5e-05 33_[+1]_39 chrIII:6360278-6360358 3.5e-05 25_[+1]_47 chrIV:8947327-8947407 5.1e-05 40_[+1]_32 chrI:12164756-12164836 5.1e-05 64_[+1]_8 chrII:8707210-8707290 5.1e-05 62_[+1]_10 chrIV:12012606-12012686 6.3e-05 17_[+1]_55 chrII:9262268-9262348 6.3e-05 72_[+1] chrI:6001209-6001289 6.3e-05 60_[+1]_12 chrIII:9753000-9753080 6.3e-05 18_[+1]_54 chrII:9010459-9010539 6.3e-05 57_[+1]_15 chrX:15338346-15338426 0.00011 65_[+1]_7 chrX:16534670-16534750 0.00011 12_[+1]_60 chrV:3874503-3874583 0.00011 63_[+1]_9 chrX:13317696-13317776 0.00011 51_[+1]_21 chrX:12870166-12870246 0.00011 [+1]_72 chrX:13555266-13555346 0.00011 71_[+1]_1 chrX:3837918-3837998 0.00013 16_[+1]_56 chrIV:11649157-11649237 0.00013 19_[+1]_53 chrII:12996386-12996466 0.00014 30_[+1]_42 chrII:7640307-7640387 0.00016 38_[+1]_34 chrI:4030695-4030775 0.00019 60_[+1]_12 chrV:10727804-10727884 0.00019 2_[+1]_70 chrIII:1682408-1682488 0.00019 [+1]_72 chrX:14562447-14562527 0.00019 70_[+1]_2 chrV:2615408-2615488 0.00019 57_[+1]_15 chrIV:1105259-1105339 0.00022 56_[+1]_16 chrIV:6751344-6751424 0.00025 61_[+1]_11 chrX:5837117-5837197 0.00029 44_[+1]_28 chrIV:11777245-11777325 0.00029 63_[+1]_9 chrX:8053273-8053353 0.00032 24_[+1]_48 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGARAGA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GAGARAGA width=8 seqs=48 chrIII:96337-96417 ( 62) GAGAGAGA 1 chrI:5599532-5599612 ( 34) GAGAGAGA 1 chrV:728066-728146 ( 51) GAGAGAGA 1 chrII:15194065-15194145 ( 59) GAGAGAGA 1 chrI:11940133-11940213 ( 51) GAGAGAGA 1 chrIV:16658903-16658983 ( 56) GAGAGAGA 1 chrV:20402965-20403045 ( 23) GAGAGAGA 1 chrV:3979979-3980059 ( 50) GAGAGGGA 1 chrI:5997612-5997692 ( 50) GAGAGGGA 1 chrV:11082603-11082683 ( 64) GAGAAAGA 1 chrX:5942315-5942395 ( 72) GAGAGGGA 1 chrIV:14622237-14622317 ( 46) GAGAGGGA 1 chrII:7090306-7090386 ( 37) GAGAAAGA 1 chrII:5932507-5932587 ( 58) GAGAAAGA 1 chrV:3856082-3856162 ( 49) GAGAAAGA 1 chrI:4020649-4020729 ( 68) GAGAGGGA 1 chrI:7759189-7759269 ( 11) GAGAGGGA 1 chrX:13337208-13337288 ( 63) GAGAAAGA 1 chrI:9701928-9702008 ( 34) GAGAAAGA 1 chrIII:6360278-6360358 ( 26) GAGAAAGA 1 chrIV:8947327-8947407 ( 41) GAGAGAAA 1 chrI:12164756-12164836 ( 65) GAGAGAAA 1 chrII:8707210-8707290 ( 63) GAGAGAAA 1 chrIV:12012606-12012686 ( 18) GTGAGAGA 1 chrII:9262268-9262348 ( 73) GTGAGAGA 1 chrI:6001209-6001289 ( 61) GTGAGAGA 1 chrIII:9753000-9753080 ( 19) GTGAGAGA 1 chrII:9010459-9010539 ( 58) GTGAGAGA 1 chrX:15338346-15338426 ( 66) GAGAAAAA 1 chrX:16534670-16534750 ( 13) GAGAAAAA 1 chrV:3874503-3874583 ( 64) GAGAAAAA 1 chrX:13317696-13317776 ( 52) GAGAAAAA 1 chrX:12870166-12870246 ( 1) GAGAAAAA 1 chrX:13555266-13555346 ( 72) GAGAAAAA 1 chrX:3837918-3837998 ( 17) GTGAGGGA 1 chrIV:11649157-11649237 ( 20) GTGAGGGA 1 chrII:12996386-12996466 ( 31) GAGAGAGG 1 chrII:7640307-7640387 ( 39) GTGAGAAA 1 chrI:4030695-4030775 ( 61) GAGAAGAA 1 chrV:10727804-10727884 ( 3) GAGAAGAA 1 chrIII:1682408-1682488 ( 1) GAGAGAGT 1 chrX:14562447-14562527 ( 71) GAGAAGAA 1 chrV:2615408-2615488 ( 58) GAGAGAGT 1 chrIV:1105259-1105339 ( 57) GAGAGGGG 1 chrIV:6751344-6751424 ( 62) GTGAAAAA 1 chrX:5837117-5837197 ( 45) GAGAAAGT 1 chrIV:11777245-11777325 ( 64) GAGAGAAG 1 chrX:8053273-8053353 ( 25) CAGAGAGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGARAGA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.6693 E= 5.7e-016 -1223 -335 224 -1223 153 -1223 -1223 -68 -1223 -1223 227 -1223 183 -1223 -1223 -1223 42 -1223 160 -1223 142 -1223 27 -1223 15 -1223 173 -1223 164 -1223 -172 -226 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGARAGA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 48 E= 5.7e-016 0.000000 0.020833 0.979167 0.000000 0.812500 0.000000 0.000000 0.187500 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.375000 0.000000 0.625000 0.000000 0.750000 0.000000 0.250000 0.000000 0.312500 0.000000 0.687500 0.000000 0.875000 0.000000 0.062500 0.062500 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGARAGA MEME-1 regular expression -------------------------------------------------------------------------------- GAGA[GA][AG][GA]A -------------------------------------------------------------------------------- Time 6.48 secs. ******************************************************************************** ******************************************************************************** MOTIF CANCTGWY MEME-2 width = 8 sites = 110 llr = 737 E-value = 1.8e-021 ******************************************************************************** -------------------------------------------------------------------------------- Motif CANCTGWY MEME-2 Description -------------------------------------------------------------------------------- Simplified A :a31::3: pos.-specific C a:25::15 probability G ::32:a1: matrix T ::22a:55 bits 2.3 * * 2.0 * * 1.8 ** ** 1.6 ** ** Relative 1.4 ** ** Entropy 1.1 ** ** (9.7 bits) 0.9 ** ** * 0.7 ** ** * 0.5 ** ** * 0.2 ** ***** 0.0 -------- Multilevel CAGCTGTT consensus AG AC sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CANCTGWY MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:5837117-5837197 25 1.05e-05 GGTACGAGAA CAGCTGTC GTCCTCATTT chrIII:6362518-6362598 40 1.05e-05 AAAATTTTGT CAGCTGTC TTTGACCGCA chrIV:1105259-1105339 46 1.05e-05 TCGAAGAAGA CAGCTGTC GTTGAGAGGG chrII:6290440-6290520 66 1.05e-05 CTCAGAACGA CAGCTGTC TCAACAC chrV:15564162-15564242 64 2.52e-05 TGCAACAAAA CAGCTGTT ATCAATAGT chrI:10074889-10074969 14 2.52e-05 CATCTGACAT CAGCTGTT TGTTGTCTTC chrX:15338346-15338426 4 2.52e-05 TAA CAGCTGTT ACACCCCCGA chrIII:9620368-9620448 40 2.52e-05 actccactca cAGCTGTT TGTGACCCCA chrX:7524039-7524119 30 2.52e-05 TTTTGGTGGT CAGCTGTT TTGTGTGCTC chrX:6591849-6591929 2 3.50e-05 G CAGCTGAC GTTGATCGCA chrV:1481004-1481084 45 3.50e-05 CCAACAACAA CAGCTGAC TTTTCGTCAA chrX:14786902-14786982 23 5.96e-05 CGAACAACGT CAGCTGAT GCTCATAACG chrX:12878113-12878193 54 5.96e-05 TAATCACCGT CACCTGTC TTTTTCACCT chrI:5130912-5130992 37 8.90e-05 CATCAACGAT CACCTGTT CTACTTTGGA chrII:6891996-6892076 46 8.90e-05 TTCGCTGCGT CAACTGTC GCATTCGAGG chrIV:4024743-4024823 27 8.90e-05 GGTGAAGCGA CAACTGTC GAGTAGTGTA chrIII:6405320-6405400 47 8.90e-05 AAGAAGAAGC CAACTGTC TCGTTGATAA chrI:6001209-6001289 44 8.90e-05 CACGTGTTGT CACCTGTT CTGGAACCAG chrX:13317696-13317776 26 8.90e-05 GTCCCAACGC CACCTGTT TCTTATGTTT chrX:12873760-12873840 68 8.90e-05 ATTCTTTTTT CACCTGTT GCTCG chrIV:3656019-3656099 42 8.90e-05 TGATATCTTT CAACTGTC AGAGAAATGT chrIV:11068437-11068517 25 8.90e-05 GGAAATGGAA CAACTGTC AATTTAAGTT chrII:7339185-7339265 25 1.19e-04 CCGTGATATC CAACTGTT TCGTCTTACA chrX:3108735-3108815 63 1.19e-04 TCGTGGTAAA CAACTGTT TTCAAATCCT chrIII:4113782-4113862 46 1.19e-04 TCGAATGAGC CAACTGTT TTTGTTACAA chrII:7836779-7836859 24 1.19e-04 ATGACCCTGA CAACTGTT ATCAACGGGC chrX:8764200-8764280 53 1.19e-04 ATGCGCTCTG CAACTGTT GTCTGTATGT chrX:4075231-4075311 17 1.19e-04 TAGCAAAGAC CAACTGTT GCTCTTTTTA chrI:5389113-5389193 66 1.19e-04 TGAAAAGGAG CAACTGTT TTTGTTT chrII:5698410-5698490 24 1.44e-04 ATTGTGATAT CAGGTGTT ACGTTGTGGA chrX:4219642-4219722 52 1.44e-04 AAATGCTCGC CACCTGAC TGAGTCTTTC chrX:2348116-2348196 62 1.44e-04 AACAATTTAT CAGGTGTT GGCAGAGATG chrX:3839370-3839450 62 1.71e-04 ATAACAACAC CAACTGAC GGTAGGGGTT chrX:8786854-8786934 5 1.71e-04 TTAA CAACTGAC TGATCACGTC chrV:13473652-13473732 65 1.71e-04 GTTGTTTTGA CACCTGAT TCTTATAT chrIV:8975087-8975167 40 1.71e-04 GATATAGGGT CACCTGAT TGTAAGCTCT chrIV:7047096-7047176 71 2.15e-04 TTTCAATGAC CATCTGTC TG chrX:2075283-2075363 68 2.15e-04 ACTTTACAGT CATCTGTC ATATT chrX:1051186-1051266 14 2.15e-04 GATTAATTAT CATCTGTC AGTCTCTGCG chrX:10853440-10853520 9 2.15e-04 TACGTTTA CAACTGAT TTCTTCCTTC chrI:14865036-14865116 49 2.15e-04 ACAAAAGTAA CAACTGAT TCTTCGTCTC chrIII:6402470-6402550 35 2.15e-04 TTCATTCACC CAACTGAT ACCTCCAAAC chrII:15194065-15194145 16 2.60e-04 TCGATCAGAT CATCTGTT CAAAAAAGAT chrX:16815698-16815778 19 2.60e-04 GCGGATTGAA CATCTGTT TCTATTTTCC chrV:618075-618155 45 2.60e-04 AGAATGTAAG CAGGTGAT ATTATAGCCG chrX:9248201-9248281 25 2.60e-04 ATACATTTTT CAGGTGAT TCTCGAAGAC chrIV:3026054-3026134 4 2.60e-04 CAT CAGGTGAT GACGTCAATC chrX:17043118-17043198 62 2.88e-04 ACAATGATGA CACGTGTT TTTTTTTCGC chrX:10333484-10333564 56 2.88e-04 ATGAAGTTTT CACGTGTT ACTTCACGTG chrX:13106605-13106685 26 2.88e-04 TGCCTGCAGA CAAGTGTC ACGTGAGGAT chrV:14847442-14847522 25 3.30e-04 TCTGCGGGGA CAGCTGCC GTCTCACCGC chrV:18581890-18581970 32 3.30e-04 AAATTAATGT CAGCTGCC GTCGTAGGGA chrX:13539902-13539982 49 3.77e-04 CTTTAAGAGG CACGTGAC TCATGTTGAT chrIV:11636480-11636560 49 3.77e-04 GAATGAGCGG CAGCTGCT GTTGTTACTT chrV:11309135-11309215 51 3.77e-04 CGGGAGCACA CAGCTGCT ATTTTCCCCT chrIV:746517-746597 16 3.77e-04 TTCTTCCTGA CAGCTGCT CTGATGTTTC chrIII:9742167-9742247 41 3.77e-04 CGTCTCTCTT CATCTGAT GCTCTCTCTC chrII:10557426-10557506 36 3.77e-04 CGTTTCTAAC CACGTGAC ATATATTCTT chrII:10300519-10300599 23 3.77e-04 TGACAAATTA CACGTGAC GTCAGCCACG chrI:9739491-9739571 51 3.77e-04 TTCATTTTCT CAGCTGGC CGGTCCTTGA chrI:12164756-12164836 9 4.29e-04 TCCATGGT CAGTTGTC GAATTGGACC chrIII:4283317-4283397 16 4.29e-04 GAAGAGCTGG CAGTTGTC TTGCCTCCCG chrIV:8476342-8476422 53 4.29e-04 AAGAAATGGC CAGTTGTC ATTTCATTTT chrII:8707210-8707290 37 4.29e-04 TGAAAAGGTA CAGCTGGT TGAAGAAGAA chrI:6166797-6166877 53 4.29e-04 GGCTCTGAGA CAGTTGTC GTTGGGAAAA chrIV:3030033-3030113 64 4.29e-04 tgtgttgtgg cagttgtc tcgggtgtg chrV:6630931-6631011 50 4.29e-04 ATCAGTTTTT CACGTGAT TGAATTTCTC chrX:14287985-14288065 36 4.29e-04 TTCGAACGAA CAGTTGTC TTTGTGGGAA chrX:14566200-14566280 68 4.96e-04 AACTTCCAAA CAGTTGTT CAATG chrX:6826012-6826092 31 4.96e-04 GTTTTTTTTT CAGTTGTT GTTTGTCTCG chrV:6505562-6505642 38 4.96e-04 TTCCGATTCA CATGTGTC ACGTGGATAG chrX:13341106-13341186 8 4.96e-04 TTCTCAA CAGTTGTT AGGTCCTGAG chrIV:1623917-1623997 8 5.44e-04 GGTTCAA CATGTGTT GCGTACTCAC chrX:3021629-3021709 7 5.44e-04 ACCGAG CAGATGTT AAACTAAAAG chrI:8787788-8787868 10 5.86e-04 TTCACATGA CAACTGCC AAGTAACTTA chrV:11798494-11798574 44 6.89e-04 ACGTTTTTGG CACTTGTC ACAGGTTATG chrV:8662350-8662430 25 6.89e-04 CCAACCAGAC CATGTGAC ACCTCGGTTG chrIV:4402554-4402634 55 6.89e-04 GCAGCGAAAT CATGTGAC GACGGCAGCG chrX:2316347-2316427 6 6.89e-04 ACTCT CATGTGAC CTTTGCAAAA chrV:12635395-12635475 43 6.89e-04 TGTCCCTATC CATGTGAC CCTTTTGCAC chrIII:4731427-4731507 21 6.89e-04 ATGTCAATGT CACCTGGT ATTCATTTTC chrX:2802939-2803019 36 8.14e-04 TCCGACAGCT CATGTGAT CTTTTTGGCG chrIII:1682408-1682488 54 8.14e-04 gatacacaga caGATGAT CATGAACCAC chrII:4494668-4494748 20 8.14e-04 CACAGAACAA CAATTGTC TCGATTGACG chrIV:16169884-16169964 46 8.91e-04 TGGTTCTAAT CAATTGTT AATCAAGGAC chrX:13113593-13113673 7 8.91e-04 TCGCAT CAAATGTC ATTTTCATTT chrII:6028755-6028835 27 8.91e-04 CGGACGGAAG CAGGTGGT GAATGATGAG chrV:13788096-13788176 59 1.03e-03 AATCCCTGGT CACATGAC ATAGGACAAT chrIV:13880953-13881033 50 1.03e-03 CCGCGTGCAC CACATGAC GGACCAAAGC chrIV:8028470-8028550 48 1.03e-03 CGCATCTTGT CACGTGCC TCTTCACTCA chrIV:1108172-1108252 21 1.03e-03 AATCTTGTTG CATCTGGC CAGCTAGCCG chrV:10937472-10937552 6 1.15e-03 ACTCT CACATGAT TCAATTCCTA chrV:728066-728146 59 1.15e-03 GAGAGAGAGA CAATTGAT GAATAGATAG chrI:548076-548156 39 1.15e-03 CAATCATCGT CAATTGAT CCATTGAtct chrII:7977651-7977731 47 1.15e-03 CATTCTCTAT CACATGAT ATATTTAGAT chrX:14562447-14562527 56 1.15e-03 TCGAAGGGAA CAAATGAC GCCATTGGAG chrIV:11649157-11649237 8 1.15e-03 CGAATGG CACATGAT CTCTGTGAGG chrII:12622319-12622399 60 1.26e-03 AGGATCCGGT CACGTGGT GGATGTCAAT chrI:9685303-9685383 65 1.26e-03 TCCGATCGAC CAAGTGCT TGAACCCA chrV:13346043-13346123 55 1.26e-03 GTTGTGTAAT CAAATGAT GTTTCATTGT chrII:7907767-7907847 73 1.26e-03 GTGTGTACGA CACGTGGT chrII:9117887-9117967 34 1.26e-03 TATGTAATTA CATTTGTT GGTTCTGCTT chrIV:2773564-2773644 37 1.43e-03 GCGGGAAAGT CATATGAC ACTTTTTTGT chrIII:482894-482974 59 1.43e-03 TGGAAATTGT CATATGAC ACAGGAAGCC chrV:10465627-10465707 17 1.43e-03 CGTCATAATT CATATGAC ACCTTCAACA chrV:729296-729376 60 1.52e-03 TTGTTGTAAC CATATGAT CTGTGAAGTG chrII:9481601-9481681 11 1.52e-03 GTTTTGGCGC CATGTGGC TAGAGATTAA chrIV:7242557-7242637 73 1.52e-03 AGAAAAAAAA CAGTTGGT chrII:7323463-7323543 73 1.52e-03 CTTTTGCCGA CATGTGCT chrIV:9928632-9928712 31 1.60e-03 ATTGATGCTC CAATTGCC AGAAATTAGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CANCTGWY MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:5837117-5837197 1e-05 24_[+2]_48 chrIII:6362518-6362598 1e-05 39_[+2]_33 chrIV:1105259-1105339 1e-05 45_[+2]_27 chrII:6290440-6290520 1e-05 65_[+2]_7 chrV:15564162-15564242 2.5e-05 63_[+2]_9 chrI:10074889-10074969 2.5e-05 13_[+2]_59 chrX:15338346-15338426 2.5e-05 3_[+2]_69 chrIII:9620368-9620448 2.5e-05 39_[+2]_33 chrX:7524039-7524119 2.5e-05 29_[+2]_43 chrX:6591849-6591929 3.5e-05 1_[+2]_71 chrV:1481004-1481084 3.5e-05 44_[+2]_28 chrX:14786902-14786982 6e-05 22_[+2]_50 chrX:12878113-12878193 6e-05 53_[+2]_19 chrI:5130912-5130992 8.9e-05 36_[+2]_36 chrII:6891996-6892076 8.9e-05 45_[+2]_27 chrIV:4024743-4024823 8.9e-05 26_[+2]_46 chrIII:6405320-6405400 8.9e-05 46_[+2]_26 chrI:6001209-6001289 8.9e-05 43_[+2]_29 chrX:13317696-13317776 8.9e-05 25_[+2]_47 chrX:12873760-12873840 8.9e-05 67_[+2]_5 chrIV:3656019-3656099 8.9e-05 41_[+2]_31 chrIV:11068437-11068517 8.9e-05 24_[+2]_48 chrII:7339185-7339265 0.00012 24_[+2]_48 chrX:3108735-3108815 0.00012 62_[+2]_10 chrIII:4113782-4113862 0.00012 45_[+2]_27 chrII:7836779-7836859 0.00012 23_[+2]_49 chrX:8764200-8764280 0.00012 52_[+2]_20 chrX:4075231-4075311 0.00012 16_[+2]_56 chrI:5389113-5389193 0.00012 65_[+2]_7 chrII:5698410-5698490 0.00014 23_[+2]_49 chrX:4219642-4219722 0.00014 51_[+2]_21 chrX:2348116-2348196 0.00014 61_[+2]_11 chrX:3839370-3839450 0.00017 61_[+2]_11 chrX:8786854-8786934 0.00017 4_[+2]_68 chrV:13473652-13473732 0.00017 64_[+2]_8 chrIV:8975087-8975167 0.00017 39_[+2]_33 chrIV:7047096-7047176 0.00021 70_[+2]_2 chrX:2075283-2075363 0.00021 67_[+2]_5 chrX:1051186-1051266 0.00021 13_[+2]_59 chrX:10853440-10853520 0.00021 8_[+2]_64 chrI:14865036-14865116 0.00021 48_[+2]_24 chrIII:6402470-6402550 0.00021 34_[+2]_38 chrII:15194065-15194145 0.00026 15_[+2]_57 chrX:16815698-16815778 0.00026 18_[+2]_54 chrV:618075-618155 0.00026 44_[+2]_28 chrX:9248201-9248281 0.00026 24_[+2]_48 chrIV:3026054-3026134 0.00026 3_[+2]_69 chrX:17043118-17043198 0.00029 61_[+2]_11 chrX:10333484-10333564 0.00029 55_[+2]_17 chrX:13106605-13106685 0.00029 25_[+2]_47 chrV:14847442-14847522 0.00033 24_[+2]_48 chrV:18581890-18581970 0.00033 31_[+2]_41 chrX:13539902-13539982 0.00038 48_[+2]_24 chrIV:11636480-11636560 0.00038 48_[+2]_24 chrV:11309135-11309215 0.00038 50_[+2]_22 chrIV:746517-746597 0.00038 15_[+2]_57 chrIII:9742167-9742247 0.00038 40_[+2]_32 chrII:10557426-10557506 0.00038 35_[+2]_37 chrII:10300519-10300599 0.00038 22_[+2]_50 chrI:9739491-9739571 0.00038 50_[+2]_22 chrI:12164756-12164836 0.00043 8_[+2]_64 chrIII:4283317-4283397 0.00043 15_[+2]_57 chrIV:8476342-8476422 0.00043 52_[+2]_20 chrII:8707210-8707290 0.00043 36_[+2]_36 chrI:6166797-6166877 0.00043 52_[+2]_20 chrIV:3030033-3030113 0.00043 63_[+2]_9 chrV:6630931-6631011 0.00043 49_[+2]_23 chrX:14287985-14288065 0.00043 35_[+2]_37 chrX:14566200-14566280 0.0005 67_[+2]_5 chrX:6826012-6826092 0.0005 30_[+2]_42 chrV:6505562-6505642 0.0005 37_[+2]_35 chrX:13341106-13341186 0.0005 7_[+2]_65 chrIV:1623917-1623997 0.00054 7_[+2]_65 chrX:3021629-3021709 0.00054 6_[+2]_66 chrI:8787788-8787868 0.00059 9_[+2]_63 chrV:11798494-11798574 0.00069 43_[+2]_29 chrV:8662350-8662430 0.00069 24_[+2]_48 chrIV:4402554-4402634 0.00069 54_[+2]_18 chrX:2316347-2316427 0.00069 5_[+2]_67 chrV:12635395-12635475 0.00069 42_[+2]_30 chrIII:4731427-4731507 0.00069 20_[+2]_52 chrX:2802939-2803019 0.00081 35_[+2]_37 chrIII:1682408-1682488 0.00081 53_[+2]_19 chrII:4494668-4494748 0.00081 19_[+2]_53 chrIV:16169884-16169964 0.00089 45_[+2]_27 chrX:13113593-13113673 0.00089 6_[+2]_66 chrII:6028755-6028835 0.00089 26_[+2]_46 chrV:13788096-13788176 0.001 58_[+2]_14 chrIV:13880953-13881033 0.001 49_[+2]_23 chrIV:8028470-8028550 0.001 47_[+2]_25 chrIV:1108172-1108252 0.001 20_[+2]_52 chrV:10937472-10937552 0.0012 5_[+2]_67 chrV:728066-728146 0.0012 58_[+2]_14 chrI:548076-548156 0.0012 38_[+2]_34 chrII:7977651-7977731 0.0012 46_[+2]_26 chrX:14562447-14562527 0.0012 55_[+2]_17 chrIV:11649157-11649237 0.0012 7_[+2]_65 chrII:12622319-12622399 0.0013 59_[+2]_13 chrI:9685303-9685383 0.0013 64_[+2]_8 chrV:13346043-13346123 0.0013 54_[+2]_18 chrII:7907767-7907847 0.0013 72_[+2] chrII:9117887-9117967 0.0013 33_[+2]_39 chrIV:2773564-2773644 0.0014 36_[+2]_36 chrIII:482894-482974 0.0014 58_[+2]_14 chrV:10465627-10465707 0.0014 16_[+2]_56 chrV:729296-729376 0.0015 59_[+2]_13 chrII:9481601-9481681 0.0015 10_[+2]_62 chrIV:7242557-7242637 0.0015 72_[+2] chrII:7323463-7323543 0.0015 72_[+2] chrIV:9928632-9928712 0.0016 30_[+2]_42 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CANCTGWY MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CANCTGWY width=8 seqs=110 chrX:5837117-5837197 ( 25) CAGCTGTC 1 chrIII:6362518-6362598 ( 40) CAGCTGTC 1 chrIV:1105259-1105339 ( 46) CAGCTGTC 1 chrII:6290440-6290520 ( 66) CAGCTGTC 1 chrV:15564162-15564242 ( 64) CAGCTGTT 1 chrI:10074889-10074969 ( 14) CAGCTGTT 1 chrX:15338346-15338426 ( 4) CAGCTGTT 1 chrIII:9620368-9620448 ( 40) CAGCTGTT 1 chrX:7524039-7524119 ( 30) CAGCTGTT 1 chrX:6591849-6591929 ( 2) CAGCTGAC 1 chrV:1481004-1481084 ( 45) CAGCTGAC 1 chrX:14786902-14786982 ( 23) CAGCTGAT 1 chrX:12878113-12878193 ( 54) CACCTGTC 1 chrI:5130912-5130992 ( 37) CACCTGTT 1 chrII:6891996-6892076 ( 46) CAACTGTC 1 chrIV:4024743-4024823 ( 27) CAACTGTC 1 chrIII:6405320-6405400 ( 47) CAACTGTC 1 chrI:6001209-6001289 ( 44) CACCTGTT 1 chrX:13317696-13317776 ( 26) CACCTGTT 1 chrX:12873760-12873840 ( 68) CACCTGTT 1 chrIV:3656019-3656099 ( 42) CAACTGTC 1 chrIV:11068437-11068517 ( 25) CAACTGTC 1 chrII:7339185-7339265 ( 25) CAACTGTT 1 chrX:3108735-3108815 ( 63) CAACTGTT 1 chrIII:4113782-4113862 ( 46) CAACTGTT 1 chrII:7836779-7836859 ( 24) CAACTGTT 1 chrX:8764200-8764280 ( 53) CAACTGTT 1 chrX:4075231-4075311 ( 17) CAACTGTT 1 chrI:5389113-5389193 ( 66) CAACTGTT 1 chrII:5698410-5698490 ( 24) CAGGTGTT 1 chrX:4219642-4219722 ( 52) CACCTGAC 1 chrX:2348116-2348196 ( 62) CAGGTGTT 1 chrX:3839370-3839450 ( 62) CAACTGAC 1 chrX:8786854-8786934 ( 5) CAACTGAC 1 chrV:13473652-13473732 ( 65) CACCTGAT 1 chrIV:8975087-8975167 ( 40) CACCTGAT 1 chrIV:7047096-7047176 ( 71) CATCTGTC 1 chrX:2075283-2075363 ( 68) CATCTGTC 1 chrX:1051186-1051266 ( 14) CATCTGTC 1 chrX:10853440-10853520 ( 9) CAACTGAT 1 chrI:14865036-14865116 ( 49) CAACTGAT 1 chrIII:6402470-6402550 ( 35) CAACTGAT 1 chrII:15194065-15194145 ( 16) CATCTGTT 1 chrX:16815698-16815778 ( 19) CATCTGTT 1 chrV:618075-618155 ( 45) CAGGTGAT 1 chrX:9248201-9248281 ( 25) CAGGTGAT 1 chrIV:3026054-3026134 ( 4) CAGGTGAT 1 chrX:17043118-17043198 ( 62) CACGTGTT 1 chrX:10333484-10333564 ( 56) CACGTGTT 1 chrX:13106605-13106685 ( 26) CAAGTGTC 1 chrV:14847442-14847522 ( 25) CAGCTGCC 1 chrV:18581890-18581970 ( 32) CAGCTGCC 1 chrX:13539902-13539982 ( 49) CACGTGAC 1 chrIV:11636480-11636560 ( 49) CAGCTGCT 1 chrV:11309135-11309215 ( 51) CAGCTGCT 1 chrIV:746517-746597 ( 16) CAGCTGCT 1 chrIII:9742167-9742247 ( 41) CATCTGAT 1 chrII:10557426-10557506 ( 36) CACGTGAC 1 chrII:10300519-10300599 ( 23) CACGTGAC 1 chrI:9739491-9739571 ( 51) CAGCTGGC 1 chrI:12164756-12164836 ( 9) CAGTTGTC 1 chrIII:4283317-4283397 ( 16) CAGTTGTC 1 chrIV:8476342-8476422 ( 53) CAGTTGTC 1 chrII:8707210-8707290 ( 37) CAGCTGGT 1 chrI:6166797-6166877 ( 53) CAGTTGTC 1 chrIV:3030033-3030113 ( 64) CAGTTGTC 1 chrV:6630931-6631011 ( 50) CACGTGAT 1 chrX:14287985-14288065 ( 36) CAGTTGTC 1 chrX:14566200-14566280 ( 68) CAGTTGTT 1 chrX:6826012-6826092 ( 31) CAGTTGTT 1 chrV:6505562-6505642 ( 38) CATGTGTC 1 chrX:13341106-13341186 ( 8) CAGTTGTT 1 chrIV:1623917-1623997 ( 8) CATGTGTT 1 chrX:3021629-3021709 ( 7) CAGATGTT 1 chrI:8787788-8787868 ( 10) CAACTGCC 1 chrV:11798494-11798574 ( 44) CACTTGTC 1 chrV:8662350-8662430 ( 25) CATGTGAC 1 chrIV:4402554-4402634 ( 55) CATGTGAC 1 chrX:2316347-2316427 ( 6) CATGTGAC 1 chrV:12635395-12635475 ( 43) CATGTGAC 1 chrIII:4731427-4731507 ( 21) CACCTGGT 1 chrX:2802939-2803019 ( 36) CATGTGAT 1 chrIII:1682408-1682488 ( 54) CAGATGAT 1 chrII:4494668-4494748 ( 20) CAATTGTC 1 chrIV:16169884-16169964 ( 46) CAATTGTT 1 chrX:13113593-13113673 ( 7) CAAATGTC 1 chrII:6028755-6028835 ( 27) CAGGTGGT 1 chrV:13788096-13788176 ( 59) CACATGAC 1 chrIV:13880953-13881033 ( 50) CACATGAC 1 chrIV:8028470-8028550 ( 48) CACGTGCC 1 chrIV:1108172-1108252 ( 21) CATCTGGC 1 chrV:10937472-10937552 ( 6) CACATGAT 1 chrV:728066-728146 ( 59) CAATTGAT 1 chrI:548076-548156 ( 39) CAATTGAT 1 chrII:7977651-7977731 ( 47) CACATGAT 1 chrX:14562447-14562527 ( 56) CAAATGAC 1 chrIV:11649157-11649237 ( 8) CACATGAT 1 chrII:12622319-12622399 ( 60) CACGTGGT 1 chrI:9685303-9685383 ( 65) CAAGTGCT 1 chrV:13346043-13346123 ( 55) CAAATGAT 1 chrII:7907767-7907847 ( 73) CACGTGGT 1 chrII:9117887-9117967 ( 34) CATTTGTT 1 chrIV:2773564-2773644 ( 37) CATATGAC 1 chrIII:482894-482974 ( 59) CATATGAC 1 chrV:10465627-10465707 ( 17) CATATGAC 1 chrV:729296-729376 ( 60) CATATGAT 1 chrII:9481601-9481681 ( 11) CATGTGGC 1 chrIV:7242557-7242637 ( 73) CAGTTGGT 1 chrII:7323463-7323543 ( 73) CATGTGCT 1 chrIV:9928632-9928712 ( 31) CAATTGCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CANCTGWY MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.57895 E= 1.8e-021 -1343 223 -1343 -1343 183 -1343 -1343 -1343 -14 3 70 -65 -114 118 19 -96 -1343 -1343 -1343 174 -1343 -1343 227 -1343 30 -123 -134 69 -1343 109 -1343 86 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CANCTGWY MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 110 E= 1.8e-021 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.254545 0.218182 0.336364 0.190909 0.127273 0.481818 0.236364 0.154545 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.345455 0.090909 0.081818 0.481818 0.000000 0.454545 0.000000 0.545455 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CANCTGWY MEME-2 regular expression -------------------------------------------------------------------------------- CA[GAC][CG]TG[TA][TC] -------------------------------------------------------------------------------- Time 10.12 secs. ******************************************************************************** ******************************************************************************** MOTIF KCKTCTCT MEME-3 width = 8 sites = 30 llr = 264 E-value = 2.5e-004 ******************************************************************************** -------------------------------------------------------------------------------- Motif KCKTCTCT MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::1::::: pos.-specific C :a1:a:a2 probability G 4:5::::: matrix T 6:3a:a:8 bits 2.3 * * * 2.0 * * * 1.8 * **** 1.6 * **** Relative 1.4 * **** Entropy 1.1 * ***** (12.7 bits) 0.9 ** ***** 0.7 ** ***** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TCGTCTCT consensus G T C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KCKTCTCT MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrI:4030695-4030775 22 1.12e-05 CGTGCTATCT GCGTCTCT CCATCTCATG chrIII:9742167-9742247 30 1.12e-05 GTTGTTGTCG GCGTCTCT CTTCATCTGA chrV:6323131-6323211 26 1.12e-05 ATGTCCTTCT GCGTCTCT TGATTACCGC chrII:11713666-11713746 49 1.12e-05 CCACGTCACT GCGTCTCT AAGATGCATG chrII:5572246-5572326 48 1.12e-05 TTTTCTTCCT GCGTCTCT TCCATCACTT chrIV:1623917-1623997 45 1.12e-05 TTCTTTCTCT GCGTCTCT TCTCTCTCAC chrI:6001209-6001289 11 1.12e-05 GTTCTCTCTG GCGTCTCT ATGCCTCTAG chrX:1051186-1051266 29 1.12e-05 GTCAGTCTCT GCGTCTCT CAATCCATTC chrIV:740851-740931 24 1.12e-05 AAACATGTAT GCGTCTCT TGGGTATAAA chrIII:4113782-4113862 69 1.12e-05 TACAACGTCT GCGTCTCT CGCT chrV:11082603-11082683 55 2.74e-05 AAGATACTGC TCGTCTCT CGAGAAAGAA chrIII:6405320-6405400 69 2.74e-05 TGATAATCTG TCGTCTCT TCAT chrX:6020218-6020298 52 2.74e-05 TATACGCATT TCGTCTCT TCTTCTTCTG chrX:16525768-16525848 32 4.36e-05 CTTCTCCTTC GCTTCTCT ACTGATATGC chrI:2668706-2668786 32 7.50e-05 TATCCCAATA TCTTCTCT CTTATCTCGA chrI:4908221-4908301 43 7.50e-05 CTCTAGTGTC TCTTCTCT TGAGTACACT chrI:548076-548156 63 7.50e-05 Atcttcttct tcttctct ttctcttttc chrI:10074889-10074969 27 7.50e-05 CTGTTTGTTG TCTTCTCT CTCTCAAAAC chrV:3344145-3344225 35 7.50e-05 GACAGAAATA TCTTCTCT TTTTTTCTAT chrV:6768659-6768739 60 8.65e-05 CACCAAGTCT TCGTCTCC GACGGAAGTG chrX:7524039-7524119 67 8.65e-05 CAGCAACGCG TCGTCTCC GATCCA chrV:11080528-11080608 50 1.15e-04 GGTGTCTGGA TCCTCTCT ATTTCTCATA chrX:12200717-12200797 29 1.15e-04 TTTCTCGATT TCCTCTCT CTTTTTTTCA chrX:16815698-16815778 34 1.15e-04 GTTTCTATTT TCCTCTCT TCAATGACGA chrI:8787788-8787868 45 1.26e-04 GACCCATTCA GCTTCTCC ATCTTTTCAA chrIV:4402554-4402634 18 1.43e-04 GTCACTACGT TCTTCTCC TTATTCTTCT chrX:8481752-8481832 21 1.43e-04 GATTTTTTAA TCTTCTCC TTTTGGCTCC chrIII:4412248-4412328 25 1.58e-04 TAAATTGTCT GCAtctct cgttctctat chrI:7381107-7381187 18 1.88e-04 TGTATCTCTC TCATCTCT TCCTGGAAGG chrX:6202960-6203040 64 2.00e-04 GAAAAGATAG TCCTCTCC CTTGTAAAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KCKTCTCT MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:4030695-4030775 1.1e-05 21_[+3]_51 chrIII:9742167-9742247 1.1e-05 29_[+3]_43 chrV:6323131-6323211 1.1e-05 25_[+3]_47 chrII:11713666-11713746 1.1e-05 48_[+3]_24 chrII:5572246-5572326 1.1e-05 47_[+3]_25 chrIV:1623917-1623997 1.1e-05 44_[+3]_28 chrI:6001209-6001289 1.1e-05 10_[+3]_62 chrX:1051186-1051266 1.1e-05 28_[+3]_44 chrIV:740851-740931 1.1e-05 23_[+3]_49 chrIII:4113782-4113862 1.1e-05 68_[+3]_4 chrV:11082603-11082683 2.7e-05 54_[+3]_18 chrIII:6405320-6405400 2.7e-05 68_[+3]_4 chrX:6020218-6020298 2.7e-05 51_[+3]_21 chrX:16525768-16525848 4.4e-05 31_[+3]_41 chrI:2668706-2668786 7.5e-05 31_[+3]_41 chrI:4908221-4908301 7.5e-05 42_[+3]_30 chrI:548076-548156 7.5e-05 62_[+3]_10 chrI:10074889-10074969 7.5e-05 26_[+3]_46 chrV:3344145-3344225 7.5e-05 34_[+3]_38 chrV:6768659-6768739 8.7e-05 59_[+3]_13 chrX:7524039-7524119 8.7e-05 66_[+3]_6 chrV:11080528-11080608 0.00011 49_[+3]_23 chrX:12200717-12200797 0.00011 28_[+3]_44 chrX:16815698-16815778 0.00011 33_[+3]_39 chrI:8787788-8787868 0.00013 44_[+3]_28 chrIV:4402554-4402634 0.00014 17_[+3]_55 chrX:8481752-8481832 0.00014 20_[+3]_52 chrIII:4412248-4412328 0.00016 24_[+3]_48 chrI:7381107-7381187 0.00019 17_[+3]_55 chrX:6202960-6203040 0.0002 63_[+3]_9 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KCKTCTCT MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF KCKTCTCT width=8 seqs=30 chrI:4030695-4030775 ( 22) GCGTCTCT 1 chrIII:9742167-9742247 ( 30) GCGTCTCT 1 chrV:6323131-6323211 ( 26) GCGTCTCT 1 chrII:11713666-11713746 ( 49) GCGTCTCT 1 chrII:5572246-5572326 ( 48) GCGTCTCT 1 chrIV:1623917-1623997 ( 45) GCGTCTCT 1 chrI:6001209-6001289 ( 11) GCGTCTCT 1 chrX:1051186-1051266 ( 29) GCGTCTCT 1 chrIV:740851-740931 ( 24) GCGTCTCT 1 chrIII:4113782-4113862 ( 69) GCGTCTCT 1 chrV:11082603-11082683 ( 55) TCGTCTCT 1 chrIII:6405320-6405400 ( 69) TCGTCTCT 1 chrX:6020218-6020298 ( 52) TCGTCTCT 1 chrX:16525768-16525848 ( 32) GCTTCTCT 1 chrI:2668706-2668786 ( 32) TCTTCTCT 1 chrI:4908221-4908301 ( 43) TCTTCTCT 1 chrI:548076-548156 ( 63) TCTTCTCT 1 chrI:10074889-10074969 ( 27) TCTTCTCT 1 chrV:3344145-3344225 ( 35) TCTTCTCT 1 chrV:6768659-6768739 ( 60) TCGTCTCC 1 chrX:7524039-7524119 ( 67) TCGTCTCC 1 chrV:11080528-11080608 ( 50) TCCTCTCT 1 chrX:12200717-12200797 ( 29) TCCTCTCT 1 chrX:16815698-16815778 ( 34) TCCTCTCT 1 chrI:8787788-8787868 ( 45) GCTTCTCC 1 chrIV:4402554-4402634 ( 18) TCTTCTCC 1 chrX:8481752-8481832 ( 21) TCTTCTCC 1 chrIII:4412248-4412328 ( 25) GCATCTCT 1 chrI:7381107-7381187 ( 18) TCATCTCT 1 chrX:6202960-6203040 ( 64) TCCTCTCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KCKTCTCT MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.5224 E= 2.5e-004 -1155 -1155 107 92 -1155 223 -1155 -1155 -207 -68 127 0 -1155 -1155 -1155 174 -1155 223 -1155 -1155 -1155 -1155 -1155 174 -1155 223 -1155 -1155 -1155 -9 -1155 142 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KCKTCTCT MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 30 E= 2.5e-004 0.000000 0.000000 0.433333 0.566667 0.000000 1.000000 0.000000 0.000000 0.066667 0.133333 0.500000 0.300000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.200000 0.000000 0.800000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KCKTCTCT MEME-3 regular expression -------------------------------------------------------------------------------- [TG]C[GT]TCTC[TC] -------------------------------------------------------------------------------- Time 14.92 secs. ******************************************************************************** ******************************************************************************** MOTIF RGRMGSAG MEME-4 width = 8 sites = 21 llr = 191 E-value = 2.2e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif RGRMGSAG MEME-4 Description -------------------------------------------------------------------------------- Simplified A 5:45::a: pos.-specific C :::5:6:: probability G 5a6:a4:a matrix T :::::::: bits 2.3 * * * 2.0 * * * 1.8 * * ** 1.6 * * ** Relative 1.4 * **** Entropy 1.1 ******** (13.2 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GGGCGCAG consensus A AA G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGRMGSAG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrV:11082603-11082683 9 4.85e-06 ATTTGAGT GGGCGCAG AGCGATTCCG chrV:11309135-11309215 24 1.78e-05 TGACAAGAGG GGGAGCAG AGGGCGGCGC chrX:13337208-13337288 39 1.78e-05 TAAAAAGGGA GGGAGCAG AAGAAACAAA chrII:10300519-10300599 60 1.78e-05 TTCTTCCTGC GGGAGCAG CATGATGTGC chrII:4518452-4518532 21 2.25e-05 AACCCGAATT GGGCGGAG CCAAAGGGTC chrI:5599532-5599612 11 2.25e-05 GAAGTTGAGG GGGCGGAG AAACAGTGTG chrV:728066-728146 16 2.25e-05 AAACTATAGG GGGCGGAG TCGAGGCAGT chrIV:2773564-2773644 69 5.04e-05 ACAGGGGAGG GGGAGGAG GTCG chrII:9262268-9262348 47 5.04e-05 AGGTGAAGTT GGGAGGAG TGTCGAGAAA chrX:7987096-7987176 41 5.04e-05 AAGAAGAGCG GGGAGGAG GGTGTCCATG chrIII:96337-96417 6 6.80e-05 gtgag agacgcag agaTTTGGTT chrIV:1761746-1761826 4 6.80e-05 GGG AGACGCAG AGAACGGAGA chrII:9481601-9481681 30 6.80e-05 AGAGATTAAT AGACGCAG ATAAAAAGAG chrV:7894113-7894193 47 6.80e-05 TTCGGTGCGA GGAAGCAG GATGCGGGAT chrIV:12012606-12012686 41 6.80e-05 GAAGACGAAG AGACGCAG ATCTAGCGGC chrII:12996386-12996466 41 6.80e-05 GAGAGAGGAG AGACGCAG ACGGGCAAAC chrII:7090306-7090386 46 6.80e-05 CGAGAAAGAG AGACGCAG GCTGACTGCA chrIII:9753000-9753080 8 6.80e-05 TGAAAAT AGACGCAG ACAGTGAGAG chrV:15564162-15564242 44 8.28e-05 ACCGATTGAG AGGAGGAG AATGCAACAA chrX:3837918-3837998 33 8.28e-05 GATGGCGCGA AGGAGGAG ATGATTTCAA chrI:6437521-6437601 65 9.46e-05 AATTATTCCG AGAAGCAG CTAAATGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGRMGSAG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:11082603-11082683 4.8e-06 8_[+4]_64 chrV:11309135-11309215 1.8e-05 23_[+4]_49 chrX:13337208-13337288 1.8e-05 38_[+4]_34 chrII:10300519-10300599 1.8e-05 59_[+4]_13 chrII:4518452-4518532 2.3e-05 20_[+4]_52 chrI:5599532-5599612 2.3e-05 10_[+4]_62 chrV:728066-728146 2.3e-05 15_[+4]_57 chrIV:2773564-2773644 5e-05 68_[+4]_4 chrII:9262268-9262348 5e-05 46_[+4]_26 chrX:7987096-7987176 5e-05 40_[+4]_32 chrIII:96337-96417 6.8e-05 5_[+4]_67 chrIV:1761746-1761826 6.8e-05 3_[+4]_69 chrII:9481601-9481681 6.8e-05 29_[+4]_43 chrV:7894113-7894193 6.8e-05 46_[+4]_26 chrIV:12012606-12012686 6.8e-05 40_[+4]_32 chrII:12996386-12996466 6.8e-05 40_[+4]_32 chrII:7090306-7090386 6.8e-05 45_[+4]_27 chrIII:9753000-9753080 6.8e-05 7_[+4]_65 chrV:15564162-15564242 8.3e-05 43_[+4]_29 chrX:3837918-3837998 8.3e-05 32_[+4]_40 chrI:6437521-6437601 9.5e-05 64_[+4]_8 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGRMGSAG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RGRMGSAG width=8 seqs=21 chrV:11082603-11082683 ( 9) GGGCGCAG 1 chrV:11309135-11309215 ( 24) GGGAGCAG 1 chrX:13337208-13337288 ( 39) GGGAGCAG 1 chrII:10300519-10300599 ( 60) GGGAGCAG 1 chrII:4518452-4518532 ( 21) GGGCGGAG 1 chrI:5599532-5599612 ( 11) GGGCGGAG 1 chrV:728066-728146 ( 16) GGGCGGAG 1 chrIV:2773564-2773644 ( 69) GGGAGGAG 1 chrII:9262268-9262348 ( 47) GGGAGGAG 1 chrX:7987096-7987176 ( 41) GGGAGGAG 1 chrIII:96337-96417 ( 6) AGACGCAG 1 chrIV:1761746-1761826 ( 4) AGACGCAG 1 chrII:9481601-9481681 ( 30) AGACGCAG 1 chrV:7894113-7894193 ( 47) GGAAGCAG 1 chrIV:12012606-12012686 ( 41) AGACGCAG 1 chrII:12996386-12996466 ( 41) AGACGCAG 1 chrII:7090306-7090386 ( 46) AGACGCAG 1 chrIII:9753000-9753080 ( 8) AGACGCAG 1 chrV:15564162-15564242 ( 44) AGGAGGAG 1 chrX:3837918-3837998 ( 33) AGGAGGAG 1 chrI:6437521-6437601 ( 65) AGAAGCAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGRMGSAG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.0668 E= 2.2e+001 76 -1104 134 -1104 -1104 -1104 227 -1104 61 -1104 147 -1104 76 130 -1104 -1104 -1104 -1104 227 -1104 -1104 154 88 -1104 183 -1104 -1104 -1104 -1104 -1104 227 -1104 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGRMGSAG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 21 E= 2.2e+001 0.476190 0.000000 0.523810 0.000000 0.000000 0.000000 1.000000 0.000000 0.428571 0.000000 0.571429 0.000000 0.476190 0.523810 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.619048 0.380952 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGRMGSAG MEME-4 regular expression -------------------------------------------------------------------------------- [GA]G[GA][CA]G[CG]AG -------------------------------------------------------------------------------- Time 18.37 secs. ******************************************************************************** ******************************************************************************** MOTIF TTTYTCTC MEME-5 width = 8 sites = 52 llr = 397 E-value = 8.4e-003 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTTYTCTC MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C :3:5:8:7 probability G ::::::11 matrix T a8a5a292 bits 2.3 2.0 1.8 * * * 1.6 * * ** Relative 1.4 * * *** Entropy 1.1 *** *** (11.0 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TTTCTCTC consensus C T T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTYTCTC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIV:8036633-8036713 30 2.35e-05 CAGTTCTCTT TTTCTCTC TCTTTTCTCG chrI:1695179-1695259 27 2.35e-05 GTGAtctttc tttctctc tctctctctt chrV:14847442-14847522 62 2.35e-05 GCATTTTTGC TTTCTCTC GGGGTTTTCG chrX:6410510-6410590 16 2.35e-05 GGCTCTCGTC TTTCTCTC TGCCTGGGGC chrIII:7217220-7217300 35 2.35e-05 AGTGGGTACC TTTCTCTC GCATCTCTCA chrX:6741125-6741205 36 2.35e-05 ATCAATGTAT TTTCTCTC GTACTCATCG chrV:6630931-6631011 62 2.35e-05 CGTGATTGAA TTTCTCTC CAATTTCCGA chrIII:4412248-4412328 42 2.35e-05 tcgttctcta tttctctc gctttctatt chrIV:8605375-8605455 61 2.35e-05 ATATGAGAGA TTTCTCTC TGTTTTCTTT chrIII:10816182-10816262 68 2.35e-05 AAAGACATTA TTtctctc tctct chrX:12200717-12200797 17 5.66e-05 TTTCACATCA TTTTTCTC GATTTCCTCT chrX:5209553-5209633 57 5.66e-05 TCCGCAACCT TTTTTCTC CCAACAGTTT chrIV:8476342-8476422 67 5.66e-05 TGTCATTTCA TTTTTCTC ATCGTC chrI:10074889-10074969 54 5.66e-05 CTCCGCCTAG TTTTTCTC TTCTTGCTCA chrX:10853440-10853520 27 5.66e-05 TTCTTCCTTC TTTTTCTC GGTTTCATTG chrX:7715629-7715709 7 5.66e-05 ccaaca tttttctc acctcttccg chrIV:6514861-6514941 63 5.66e-05 GAGTCTTTCC TTTTTCTC CAAGCATTTC chrI:9095697-9095777 41 7.32e-05 TCACGGGTAC TCTCTCTC TCCCTTTTTC chrIII:9742167-9742247 51 7.32e-05 CATCTGATGC TCTCTCTC GATCCTCTTT chrIV:1623917-1623997 53 7.32e-05 CTGCGTCTCT TCTCTCTC ACACACATTC chrI:9739491-9739571 33 7.32e-05 TATCACTCTA TCTCTCTC TTCATTTTCT chrX:13113593-13113673 50 9.67e-05 CAAATTGTTA TCTTTCTC TAAAATGACC chrIII:6360278-6360358 57 1.30e-04 TCCGATCACT TTTCTCTT GATGTCTGCA chrV:729296-729376 14 1.69e-04 TGGTTCTTAG TTTCTCTG CGGACTCCTG chrI:6437521-6437601 10 1.69e-04 TATCCTCCC TTTCTCTG TTTTTGTTGT chrIV:14606596-14606676 6 1.69e-04 TTTGA TTTCTCGC TCCTTCTTTT chrIII:4113782-4113862 24 2.02e-04 CGGAGCTCTT TTTCTTTC ATCTTCGAAT chrIV:11649157-11649237 73 2.02e-04 ATCTTTGTGT TTTCTTTC chrX:13744854-13744934 1 2.02e-04 . TTTCTTTC TTTTTTTGTT chrX:13539902-13539982 22 2.48e-04 AATCTTCAAC TTTTTCTT CGACACATTC chrX:14786902-14786982 70 2.48e-04 GAGATTTGTG TTTTTCTT TTC chrII:5572246-5572326 37 2.48e-04 TTTCCTCCCG TTTTTCTT CCTGCGTCTC chrIII:4687290-4687370 44 2.48e-04 CTAAAGATGA TTTTTCTT TTCTTTTTTT chrX:16732412-16732492 16 2.48e-04 ttctactttt tttttctt ctttccgctc chrX:13739401-13739481 66 2.48e-04 TTTCACGTTT TTTTTCTT CGGGGGC chrIII:4731427-4731507 39 2.48e-04 ATTCATTTTC TTTTTCTT CTTGGTTAAG chrX:6591849-6591929 20 3.27e-04 GTTGATCGCA TTTTTCGC AAAATGACAG chrIV:13880953-13881033 7 3.27e-04 ACCGAG TTTTTCTG TGCACTTCCC chrI:4941209-4941289 56 3.27e-04 GCGTCCCAGA TTTTTCTG ATATTCCGAC chrII:9115790-9115870 25 3.27e-04 TCCCACCAAC TTTTTCTG CTAATCAGCG chrV:7822745-7822825 61 3.27e-04 ATAATTGCGA TCTCTCTT GTTGCTCCTC chrX:17043118-17043198 70 3.73e-04 GACACGTGTT TTTTTTTC GCT chrIII:8122118-8122198 27 3.73e-04 GCGCTCATAT TTTTTTTC TAGTTATTTT chrV:12636443-12636523 32 3.73e-04 CAATCTCTTT TTTTTTTC ATCTTGGGCT chrII:9481601-9481681 73 4.01e-04 GCTCTTGAAG TCTCTCGC chrIII:4317183-4317263 70 4.01e-04 ATCCTAGTTG TCTCTCGC TAC chrI:6001209-6001289 3 4.01e-04 GT TCTCTCTG GCGTCTCTAT chrIV:3030033-3030113 5 4.01e-04 ATGC TCTCTCGC AAGTCTGAGT chrIV:10251472-10251552 72 4.25e-04 AATAAATACC TCTCTTTC T chrIII:6402470-6402550 19 4.58e-04 CACAAGATCT TCTTTCTT CATTCACCCA chrV:12518888-12518968 11 5.30e-04 TTTGTCGTTT TCTTTTTC ATTGTCTCGC chrX:12873760-12873840 7 5.99e-04 ATTGCC TTTCTTTT GAAACACACA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTYTCTC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:8036633-8036713 2.3e-05 29_[+5]_43 chrI:1695179-1695259 2.3e-05 26_[+5]_46 chrV:14847442-14847522 2.3e-05 61_[+5]_11 chrX:6410510-6410590 2.3e-05 15_[+5]_57 chrIII:7217220-7217300 2.3e-05 34_[+5]_38 chrX:6741125-6741205 2.3e-05 35_[+5]_37 chrV:6630931-6631011 2.3e-05 61_[+5]_11 chrIII:4412248-4412328 2.3e-05 41_[+5]_31 chrIV:8605375-8605455 2.3e-05 60_[+5]_12 chrIII:10816182-10816262 2.3e-05 67_[+5]_5 chrX:12200717-12200797 5.7e-05 16_[+5]_56 chrX:5209553-5209633 5.7e-05 56_[+5]_16 chrIV:8476342-8476422 5.7e-05 66_[+5]_6 chrI:10074889-10074969 5.7e-05 53_[+5]_19 chrX:10853440-10853520 5.7e-05 26_[+5]_46 chrX:7715629-7715709 5.7e-05 6_[+5]_66 chrIV:6514861-6514941 5.7e-05 62_[+5]_10 chrI:9095697-9095777 7.3e-05 40_[+5]_32 chrIII:9742167-9742247 7.3e-05 50_[+5]_22 chrIV:1623917-1623997 7.3e-05 52_[+5]_20 chrI:9739491-9739571 7.3e-05 32_[+5]_40 chrX:13113593-13113673 9.7e-05 49_[+5]_23 chrIII:6360278-6360358 0.00013 56_[+5]_16 chrV:729296-729376 0.00017 13_[+5]_59 chrI:6437521-6437601 0.00017 9_[+5]_63 chrIV:14606596-14606676 0.00017 5_[+5]_67 chrIII:4113782-4113862 0.0002 23_[+5]_49 chrIV:11649157-11649237 0.0002 72_[+5] chrX:13744854-13744934 0.0002 [+5]_72 chrX:13539902-13539982 0.00025 21_[+5]_51 chrX:14786902-14786982 0.00025 69_[+5]_3 chrII:5572246-5572326 0.00025 36_[+5]_36 chrIII:4687290-4687370 0.00025 43_[+5]_29 chrX:16732412-16732492 0.00025 15_[+5]_57 chrX:13739401-13739481 0.00025 65_[+5]_7 chrIII:4731427-4731507 0.00025 38_[+5]_34 chrX:6591849-6591929 0.00033 19_[+5]_53 chrIV:13880953-13881033 0.00033 6_[+5]_66 chrI:4941209-4941289 0.00033 55_[+5]_17 chrII:9115790-9115870 0.00033 24_[+5]_48 chrV:7822745-7822825 0.00033 60_[+5]_12 chrX:17043118-17043198 0.00037 69_[+5]_3 chrIII:8122118-8122198 0.00037 26_[+5]_46 chrV:12636443-12636523 0.00037 31_[+5]_41 chrII:9481601-9481681 0.0004 72_[+5] chrIII:4317183-4317263 0.0004 69_[+5]_3 chrI:6001209-6001289 0.0004 2_[+5]_70 chrIV:3030033-3030113 0.0004 4_[+5]_68 chrIV:10251472-10251552 0.00042 71_[+5]_1 chrIII:6402470-6402550 0.00046 18_[+5]_54 chrV:12518888-12518968 0.00053 10_[+5]_62 chrX:12873760-12873840 0.0006 6_[+5]_66 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTYTCTC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTTYTCTC width=8 seqs=52 chrIV:8036633-8036713 ( 30) TTTCTCTC 1 chrI:1695179-1695259 ( 27) TTTCTCTC 1 chrV:14847442-14847522 ( 62) TTTCTCTC 1 chrX:6410510-6410590 ( 16) TTTCTCTC 1 chrIII:7217220-7217300 ( 35) TTTCTCTC 1 chrX:6741125-6741205 ( 36) TTTCTCTC 1 chrV:6630931-6631011 ( 62) TTTCTCTC 1 chrIII:4412248-4412328 ( 42) TTTCTCTC 1 chrIV:8605375-8605455 ( 61) TTTCTCTC 1 chrIII:10816182-10816262 ( 68) TTTCTCTC 1 chrX:12200717-12200797 ( 17) TTTTTCTC 1 chrX:5209553-5209633 ( 57) TTTTTCTC 1 chrIV:8476342-8476422 ( 67) TTTTTCTC 1 chrI:10074889-10074969 ( 54) TTTTTCTC 1 chrX:10853440-10853520 ( 27) TTTTTCTC 1 chrX:7715629-7715709 ( 7) TTTTTCTC 1 chrIV:6514861-6514941 ( 63) TTTTTCTC 1 chrI:9095697-9095777 ( 41) TCTCTCTC 1 chrIII:9742167-9742247 ( 51) TCTCTCTC 1 chrIV:1623917-1623997 ( 53) TCTCTCTC 1 chrI:9739491-9739571 ( 33) TCTCTCTC 1 chrX:13113593-13113673 ( 50) TCTTTCTC 1 chrIII:6360278-6360358 ( 57) TTTCTCTT 1 chrV:729296-729376 ( 14) TTTCTCTG 1 chrI:6437521-6437601 ( 10) TTTCTCTG 1 chrIV:14606596-14606676 ( 6) TTTCTCGC 1 chrIII:4113782-4113862 ( 24) TTTCTTTC 1 chrIV:11649157-11649237 ( 73) TTTCTTTC 1 chrX:13744854-13744934 ( 1) TTTCTTTC 1 chrX:13539902-13539982 ( 22) TTTTTCTT 1 chrX:14786902-14786982 ( 70) TTTTTCTT 1 chrII:5572246-5572326 ( 37) TTTTTCTT 1 chrIII:4687290-4687370 ( 44) TTTTTCTT 1 chrX:16732412-16732492 ( 16) TTTTTCTT 1 chrX:13739401-13739481 ( 66) TTTTTCTT 1 chrIII:4731427-4731507 ( 39) TTTTTCTT 1 chrX:6591849-6591929 ( 20) TTTTTCGC 1 chrIV:13880953-13881033 ( 7) TTTTTCTG 1 chrI:4941209-4941289 ( 56) TTTTTCTG 1 chrII:9115790-9115870 ( 25) TTTTTCTG 1 chrV:7822745-7822825 ( 61) TCTCTCTT 1 chrX:17043118-17043198 ( 70) TTTTTTTC 1 chrIII:8122118-8122198 ( 27) TTTTTTTC 1 chrV:12636443-12636523 ( 32) TTTTTTTC 1 chrII:9481601-9481681 ( 73) TCTCTCGC 1 chrIII:4317183-4317263 ( 70) TCTCTCGC 1 chrI:6001209-6001289 ( 3) TCTCTCTG 1 chrIV:3030033-3030113 ( 5) TCTCTCGC 1 chrIV:10251472-10251552 ( 72) TCTCTTTC 1 chrIII:6402470-6402550 ( 19) TCTTTCTT 1 chrV:12518888-12518968 ( 11) TCTTTTTC 1 chrX:12873760-12873840 ( 7) TTTCTTTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTYTCTC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.0839 E= 8.4e-003 -1234 -1234 -1234 174 -1234 23 -1234 132 -1234 -1234 -1234 174 -1234 134 -1234 62 -1234 -1234 -1234 174 -1234 196 -1234 -79 -1234 -1234 -110 159 -1234 166 -84 -50 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTYTCTC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 52 E= 8.4e-003 0.000000 0.000000 0.000000 1.000000 0.000000 0.250000 0.000000 0.750000 0.000000 0.000000 0.000000 1.000000 0.000000 0.538462 0.000000 0.461538 0.000000 0.000000 0.000000 1.000000 0.000000 0.826923 0.000000 0.173077 0.000000 0.000000 0.096154 0.903846 0.000000 0.673077 0.115385 0.211538 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTYTCTC MEME-5 regular expression -------------------------------------------------------------------------------- T[TC]T[CT]TCT[CT] -------------------------------------------------------------------------------- Time 21.65 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:6871219-6871299 8.10e-01 80 chrI:9739491-9739571 3.60e-02 32_[+5(7.32e-05)]_40 chrI:5389113-5389193 8.41e-03 80 chrIII:6398277-6398357 5.21e-01 80 chrX:3021629-3021709 1.34e-01 80 chrIV:14606596-14606676 2.21e-01 80 chrX:4075231-4075311 1.02e-01 80 chrX:8764200-8764280 2.98e-01 80 chrIV:8975087-8975167 5.81e-02 80 chrX:6020218-6020298 3.55e-03 51_[+3(2.74e-05)]_21 chrIV:10251472-10251552 1.89e-02 80 chrV:13473652-13473732 1.69e-01 80 chrII:8959348-8959428 6.59e-01 80 chrIV:9063671-9063751 2.36e-01 80 chrX:13555266-13555346 2.16e-02 80 chrX:6205044-6205124 5.47e-01 80 chrIV:11350934-11351014 5.59e-01 80 chrIV:6514861-6514941 2.02e-02 62_[+5(5.66e-05)]_10 chrIII:10816182-10816262 4.45e-02 30_[+5(7.32e-05)]_29_[+5(2.35e-05)]_\ 5 chrIV:11068437-11068517 9.30e-02 24_[+2(8.90e-05)]_48 chrIV:8605375-8605455 1.32e-02 60_[+5(2.35e-05)]_12 chrV:3870517-3870597 4.99e-01 80 chrV:12636443-12636523 3.44e-01 80 chrX:4131521-4131601 4.37e-01 80 chrIV:3026054-3026134 4.84e-02 80 chrIV:15673226-15673306 3.42e-01 80 chrV:1481004-1481084 1.25e-02 44_[+2(3.50e-05)]_28 chrIV:3656019-3656099 2.83e-02 41_[+2(8.90e-05)]_31 chrX:12873760-12873840 3.12e-03 67_[+2(8.90e-05)]_5 chrI:4792577-4792657 9.96e-02 80 chrII:9010459-9010539 4.45e-02 57_[+1(6.32e-05)]_15 chrV:20402965-20403045 1.17e-02 22_[+1(1.14e-05)]_50 chrIII:4412248-4412328 4.35e-03 41_[+5(2.35e-05)]_31 chrX:13341106-13341186 8.18e-02 80 chrIV:9725639-9725719 3.18e-01 80 chrIV:11938715-11938795 6.46e-01 80 chrIII:6402470-6402550 2.47e-02 80 chrV:6505562-6505642 4.47e-02 80 chrX:2348116-2348196 9.19e-02 80 chrV:4794438-4794518 2.20e-01 80 chrX:9248201-9248281 7.08e-02 80 chrIV:15814202-15814282 4.67e-01 80 chrX:14287985-14288065 1.00e-02 80 chrII:10300519-10300599 6.69e-03 59_[+4(1.78e-05)]_13 chrX:8481752-8481832 1.44e-01 80 chrIII:6360278-6360358 8.03e-04 19_[+1(3.54e-05)]_53 chrV:18581890-18581970 3.08e-01 80 chrIII:10035940-10036020 4.76e-01 80 chrX:13744854-13744934 2.06e-02 80 chrIV:11649157-11649237 1.75e-03 80 chrX:12870166-12870246 5.20e-02 80 chrV:6630931-6631011 4.10e-03 61_[+5(2.35e-05)]_11 chrII:6290440-6290520 1.03e-02 65_[+2(1.05e-05)]_7 chrIII:6988226-6988306 3.17e-01 80 chrV:3344145-3344225 1.68e-02 34_[+3(7.50e-05)]_38 chrIII:4731427-4731507 5.08e-02 80 chrIII:13716410-13716490 4.49e-01 80 chrV:12518888-12518968 1.41e-02 80 chrX:1536298-1536378 3.21e-01 80 chrX:13739401-13739481 2.41e-01 80 chrIII:8122118-8122198 3.62e-01 80 chrX:9956724-9956804 9.62e-01 80 chrIII:9753000-9753080 1.60e-02 7_[+4(6.80e-05)]_3_[+1(6.32e-05)]_\ 54 chrV:618075-618155 2.10e-01 80 chrI:9701928-9702008 1.35e-01 33_[+1(3.54e-05)]_39 chrX:12516595-12516675 1.63e-01 80 chrV:9260565-9260645 4.81e-01 80 chrX:6639775-6639855 7.81e-01 80 chrII:7323463-7323543 1.65e-01 80 chrX:13337208-13337288 2.95e-03 38_[+4(1.78e-05)]_16_[+1(3.54e-05)]_\ 10 chrIV:3647704-3647784 1.93e-01 80 chrIV:9928632-9928712 6.47e-01 80 chrIII:11942829-11942909 3.72e-01 80 chrX:12990913-12990993 9.54e-01 80 chrV:10465627-10465707 4.96e-01 80 chrX:6741125-6741205 2.80e-02 35_[+5(2.35e-05)]_37 chrIII:1622527-1622607 2.93e-01 80 chrI:7374833-7374913 9.13e-01 80 chrII:7836779-7836859 1.88e-01 80 chrV:8212132-8212212 1.65e-01 80 chrIII:7217220-7217300 5.78e-03 34_[+5(2.35e-05)]_38 chrIV:16658903-16658983 2.31e-02 55_[+1(1.14e-05)]_17 chrV:2615408-2615488 7.18e-03 80 chrX:16732412-16732492 1.62e-01 80 chrII:9117887-9117967 4.12e-01 80 chrX:13317696-13317776 6.38e-03 25_[+2(8.90e-05)]_47 chrX:7524039-7524119 5.19e-03 29_[+2(2.52e-05)]_29_[+3(8.65e-05)]_\ 6 chrIII:9620368-9620448 4.88e-03 39_[+2(2.52e-05)]_33 chrX:15600189-15600269 9.71e-01 80 chrX:14562447-14562527 5.40e-02 80 chrIII:4113782-4113862 6.80e-05 68_[+3(1.12e-05)]_4 chrIV:740851-740931 5.94e-03 23_[+3(1.12e-05)]_49 chrV:9128755-9128835 9.00e-02 80 chrV:12635395-12635475 5.15e-01 80 chrV:3874503-3874583 1.08e-01 80 chrX:7236885-7236965 2.95e-01 80 chrX:13106605-13106685 1.21e-02 80 chrI:14865036-14865116 8.67e-03 80 chrV:7822745-7822825 7.17e-03 80 chrX:16534670-16534750 9.13e-02 80 chrIII:482894-482974 3.03e-01 80 chrII:4494668-4494748 4.15e-01 80 chrX:4957470-4957550 3.61e-02 80 chrIV:3030033-3030113 1.96e-02 80 chrI:7759189-7759269 4.55e-03 10_[+1(3.54e-05)]_62 chrX:6826012-6826092 1.93e-02 80 chrIII:6898695-6898775 8.24e-01 80 chrI:6166797-6166877 1.82e-02 80 chrX:6410510-6410590 7.41e-03 15_[+5(2.35e-05)]_57 chrX:4219642-4219722 1.23e-01 80 chrIV:14621332-14621412 4.25e-01 80 chrII:11596467-11596547 4.19e-01 80 chrX:7715629-7715709 6.96e-02 6_[+5(5.66e-05)]_66 chrII:8707210-8707290 9.41e-03 62_[+1(5.10e-05)]_10 chrX:10853440-10853520 1.51e-02 26_[+5(5.66e-05)]_46 chrIII:4687290-4687370 2.78e-02 80 chrX:16525768-16525848 2.60e-02 31_[+3(4.36e-05)]_41 chrX:1051186-1051266 3.27e-03 28_[+3(1.12e-05)]_44 chrI:11940133-11940213 5.07e-02 50_[+1(1.14e-05)]_22 chrX:3108735-3108815 2.23e-02 80 chrX:15338346-15338426 1.56e-03 3_[+2(2.52e-05)]_69 chrX:2819063-2819143 8.65e-01 80 chrI:4020649-4020729 1.04e-02 67_[+1(3.54e-05)]_5 chrIV:5778463-5778543 6.41e-01 80 chrI:10074889-10074969 1.80e-04 13_[+2(2.52e-05)]_8_[+5(7.32e-05)]_\ 16_[+5(5.66e-05)]_19 chrI:6001209-6001289 1.17e-06 10_[+3(1.12e-05)]_25_[+2(8.90e-05)]_\ 9_[+1(6.32e-05)]_12 chrIV:6751344-6751424 9.00e-02 80 chrV:11803593-11803673 8.42e-01 80 chrX:12878113-12878193 1.59e-02 53_[+2(5.96e-05)]_19 chrX:12669094-12669174 6.86e-01 80 chrIV:1623917-1623997 5.47e-04 35_[+5(9.67e-05)]_1_[+3(1.12e-05)]_\ [+5(7.32e-05)]_20 chrIV:9053547-9053627 3.92e-01 80 chrIV:1105259-1105339 3.98e-04 45_[+2(1.05e-05)]_27 chrIV:2734834-2734914 7.32e-01 80 chrIV:11064104-11064184 8.88e-01 80 chrX:14566200-14566280 7.06e-02 80 chrII:7907767-7907847 4.25e-01 80 chrII:7339185-7339265 1.26e-01 80 chrII:5572246-5572326 7.05e-03 47_[+3(1.12e-05)]_25 chrI:7381107-7381187 1.95e-03 11_[+5(7.32e-05)]_61 chrII:5698410-5698490 1.99e-01 80 chrV:13346043-13346123 2.63e-01 80 chrX:6202960-6203040 4.49e-02 80 chrIII:1682408-1682488 6.66e-02 80 chrV:3856082-3856162 5.51e-02 48_[+1(3.54e-05)]_24 chrX:17421935-17422015 8.27e-01 80 chrX:8786854-8786934 3.22e-01 80 chrX:3837918-3837998 1.12e-02 32_[+4(8.28e-05)]_40 chrI:9685303-9685383 3.18e-01 80 chrII:7977651-7977731 3.28e-01 80 chrIV:1108172-1108252 3.27e-01 80 chrIV:11777245-11777325 1.87e-01 80 chrII:5932507-5932587 2.62e-03 57_[+1(3.54e-05)]_15 chrV:11822635-11822715 6.80e-01 80 chrII:9115790-9115870 3.72e-01 80 chrIV:8476342-8476422 1.62e-02 66_[+5(5.66e-05)]_6 chrII:7090306-7090386 1.09e-02 36_[+1(3.54e-05)]_1_[+4(6.80e-05)]_\ 27 chrII:6028755-6028835 1.09e-02 21_[+4(6.80e-05)]_51 chrX:2075283-2075363 4.63e-02 80 chrII:11713666-11713746 1.10e-02 48_[+3(1.12e-05)]_24 chrII:12622319-12622399 7.66e-02 80 chrX:2316347-2316427 8.21e-02 80 chrX:16815698-16815778 4.34e-03 80 chrII:7640307-7640387 1.28e-01 80 chrI:548076-548156 4.69e-03 62_[+3(7.50e-05)]_10 chrII:10557426-10557506 5.44e-02 80 chrIII:4283317-4283397 1.66e-01 80 chrI:4941209-4941289 1.08e-02 80 chrIV:4402554-4402634 1.52e-03 80 chrV:10891111-10891191 8.88e-01 80 chrII:12996386-12996466 1.90e-02 40_[+4(6.80e-05)]_32 chrX:7987096-7987176 2.67e-02 40_[+4(5.04e-05)]_32 chrV:10727804-10727884 1.78e-01 80 chrX:10333484-10333564 3.95e-01 80 chrV:14847442-14847522 2.00e-03 61_[+5(2.35e-05)]_11 chrII:9262268-9262348 1.24e-02 46_[+4(5.04e-05)]_18_[+1(6.32e-05)] chrIII:6405320-6405400 4.99e-04 46_[+2(8.90e-05)]_14_[+3(2.74e-05)]_\ 4 chrX:3839370-3839450 1.95e-01 80 chrX:9638991-9639071 8.98e-01 80 chrV:6323131-6323211 1.12e-02 25_[+3(1.12e-05)]_22_[+3(7.50e-05)]_\ 17 chrI:1695179-1695259 4.00e-02 26_[+5(2.35e-05)]_[+5(7.32e-05)]_38 chrIV:12012606-12012686 1.30e-02 17_[+1(6.32e-05)]_15_[+4(6.80e-05)]_\ 32 chrII:15194065-15194145 2.43e-03 48_[+1(1.14e-05)]_[+1(1.14e-05)]_16 chrIV:14622237-14622317 1.99e-02 45_[+1(3.54e-05)]_27 chrIV:8028470-8028550 1.01e-01 80 chrI:12164756-12164836 3.35e-02 64_[+1(5.10e-05)]_8 chrIII:9742167-9742247 3.61e-04 29_[+3(1.12e-05)]_13_[+5(7.32e-05)]_\ 22 chrIV:4024743-4024823 4.65e-02 26_[+2(8.90e-05)]_46 chrX:15073025-15073105 9.45e-01 80 chrIII:10817100-10817180 9.02e-02 80 chrIV:13880953-13881033 1.16e-01 80 chrX:5942315-5942395 3.00e-02 71_[+1(3.54e-05)]_1 chrV:15564162-15564242 5.97e-04 43_[+4(8.28e-05)]_12_[+2(2.52e-05)]_\ 9 chrII:6891996-6892076 1.60e-01 45_[+2(8.90e-05)]_27 chrIV:746517-746597 7.81e-02 80 chrIV:8947327-8947407 1.23e-01 40_[+1(5.10e-05)]_32 chrV:6768659-6768739 1.53e-01 59_[+3(8.65e-05)]_13 chrV:7894113-7894193 1.12e-01 46_[+4(6.80e-05)]_26 chrX:11379491-11379571 7.07e-01 80 chrV:728066-728146 3.95e-04 15_[+4(2.25e-05)]_25_[+1(1.14e-05)]_\ 24 chrV:13788096-13788176 4.14e-01 80 chrX:17043118-17043198 2.45e-02 80 chrI:6437521-6437601 2.76e-03 64_[+4(9.46e-05)]_8 chrX:16361192-16361272 3.92e-01 80 chrII:10446427-10446507 2.07e-01 80 chrV:8662350-8662430 6.39e-01 80 chrV:11082603-11082683 6.71e-06 8_[+4(4.85e-06)]_38_[+3(2.74e-05)]_\ 1_[+1(3.54e-05)]_9 chrIII:10155178-10155258 2.85e-01 80 chrIII:6362518-6362598 1.16e-02 39_[+2(1.05e-05)]_33 chrX:5387772-5387852 6.35e-01 80 chrIV:2773564-2773644 5.24e-03 68_[+4(5.04e-05)]_4 chrI:4908221-4908301 5.23e-02 42_[+3(7.50e-05)]_30 chrIV:7242557-7242637 1.01e-01 80 chrX:5209553-5209633 2.31e-02 56_[+5(5.66e-05)]_16 chrIII:5500928-5501008 6.33e-01 80 chrIII:4317183-4317263 1.33e-01 80 chrX:13113593-13113673 7.22e-02 49_[+5(9.67e-05)]_23 chrV:11309135-11309215 8.90e-04 23_[+4(1.78e-05)]_49 chrV:10937472-10937552 3.84e-01 80 chrX:14786902-14786982 1.07e-02 22_[+2(5.96e-05)]_50 chrX:8053273-8053353 1.82e-01 80 chrIV:11636480-11636560 6.51e-03 80 chrII:9481601-9481681 1.96e-03 29_[+4(6.80e-05)]_43 chrI:2668706-2668786 1.66e-02 31_[+3(7.50e-05)]_41 chrV:11798494-11798574 3.97e-01 80 chrIV:8036633-8036713 1.18e-02 29_[+5(2.35e-05)]_43 chrI:8787788-8787868 9.49e-02 80 chrI:5599532-5599612 1.68e-03 10_[+4(2.25e-05)]_15_[+1(1.14e-05)]_\ 39 chrI:5400311-5400391 8.46e-01 80 chrX:12200717-12200797 1.66e-02 16_[+5(5.66e-05)]_56 chrII:4518452-4518532 3.92e-02 20_[+4(2.25e-05)]_52 chrI:5130912-5130992 1.79e-01 36_[+2(8.90e-05)]_36 chrV:11080528-11080608 1.32e-03 80 chrV:729296-729376 3.35e-02 80 chrII:8813812-8813892 2.91e-01 80 chrIV:1761746-1761826 4.09e-02 3_[+4(6.80e-05)]_69 chrI:5997612-5997692 2.65e-02 49_[+1(3.54e-05)]_23 chrIV:16169884-16169964 4.00e-01 80 chrX:6591849-6591929 2.69e-02 1_[+2(3.50e-05)]_71 chrX:2802939-2803019 2.53e-01 80 chrV:3979979-3980059 3.75e-03 49_[+1(3.54e-05)]_23 chrI:9095697-9095777 9.25e-02 40_[+5(7.32e-05)]_32 chrIII:7115084-7115164 2.58e-01 80 chrIV:7047096-7047176 1.08e-01 80 chrI:4030695-4030775 1.24e-04 21_[+3(1.12e-05)]_35_[+4(9.46e-05)]_\ 8 chrX:13539902-13539982 6.54e-02 80 chrIII:6352609-6352689 9.09e-01 80 chrX:5837117-5837197 1.78e-04 24_[+2(1.05e-05)]_48 chrII:8128413-8128493 5.28e-01 80 chrIII:96337-96417 4.73e-03 [+1(6.32e-05)]_53_[+1(1.14e-05)]_11 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n12.farnam.hpc.yale.internal ********************************************************************************