******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/worm/fasta/RankLinear2.0_40/nhr-48.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrV:13243380-13243460 1.0000 80 chrV:3197098-3197178 1.0000 80 chrX:12188441-12188521 1.0000 80 chrII:8380337-8380417 1.0000 80 chrI:1845042-1845122 1.0000 80 chrV:14725503-14725583 1.0000 80 chrX:4102365-4102445 1.0000 80 chrX:14562761-14562841 1.0000 80 chrII:12615568-12615648 1.0000 80 chrX:10768928-10769008 1.0000 80 chrV:8288582-8288662 1.0000 80 chrX:3478157-3478237 1.0000 80 chrIII:3529936-3530016 1.0000 80 chrI:9108842-9108922 1.0000 80 chrII:13470691-13470771 1.0000 80 chrV:7543881-7543961 1.0000 80 chrIII:6216041-6216121 1.0000 80 chrV:11794351-11794431 1.0000 80 chrV:12158537-12158617 1.0000 80 chrIV:12879752-12879832 1.0000 80 chrIII:759844-759924 1.0000 80 chrII:13640403-13640483 1.0000 80 chrIV:10216268-10216348 1.0000 80 chrII:11247813-11247893 1.0000 80 chrII:7290109-7290189 1.0000 80 chrV:4433573-4433653 1.0000 80 chrV:5192659-5192739 1.0000 80 chrV:16100293-16100373 1.0000 80 chrV:20608966-20609046 1.0000 80 chrIV:12921157-12921237 1.0000 80 chrX:15316052-15316132 1.0000 80 chrII:2805153-2805233 1.0000 80 chrV:9327784-9327864 1.0000 80 chrX:15761163-15761243 1.0000 80 chrII:13669033-13669113 1.0000 80 chrIV:8254362-8254442 1.0000 80 chrV:13607022-13607102 1.0000 80 chrX:17421921-17422001 1.0000 80 chrX:5647113-5647193 1.0000 80 chrII:8816702-8816782 1.0000 80 chrI:12554395-12554475 1.0000 80 chrII:9493400-9493480 1.0000 80 chrIV:4212969-4213049 1.0000 80 chrII:7406572-7406652 1.0000 80 chrX:12186291-12186371 1.0000 80 chrX:2893437-2893517 1.0000 80 chrII:8854161-8854241 1.0000 80 chrIV:2413813-2413893 1.0000 80 chrIV:9634068-9634148 1.0000 80 chrI:7740023-7740103 1.0000 80 chrV:5949756-5949836 1.0000 80 chrII:7277378-7277458 1.0000 80 chrV:6251329-6251409 1.0000 80 chrV:3388518-3388598 1.0000 80 chrV:5413025-5413105 1.0000 80 chrX:8935166-8935246 1.0000 80 chrX:4564962-4565042 1.0000 80 chrV:13608425-13608505 1.0000 80 chrV:10333976-10334056 1.0000 80 chrII:13078974-13079054 1.0000 80 chrI:9313946-9314026 1.0000 80 chrI:7243861-7243941 1.0000 80 chrX:13339321-13339401 1.0000 80 chrX:12874074-12874154 1.0000 80 chrIV:12890625-12890705 1.0000 80 chrIV:633716-633796 1.0000 80 chrV:20499817-20499897 1.0000 80 chrI:2945760-2945840 1.0000 80 chrII:8263724-8263804 1.0000 80 chrIV:8261022-8261102 1.0000 80 chrV:9085929-9086009 1.0000 80 chrIII:10150839-10150919 1.0000 80 chrX:8485558-8485638 1.0000 80 chrIV:5659091-5659171 1.0000 80 chrIII:13066944-13067024 1.0000 80 chrV:12533710-12533790 1.0000 80 chrIII:6179204-6179284 1.0000 80 chrIII:2760879-2760959 1.0000 80 chrV:10878323-10878403 1.0000 80 chrV:6901321-6901401 1.0000 80 chrV:12410764-12410844 1.0000 80 chrI:11491457-11491537 1.0000 80 chrII:13004288-13004368 1.0000 80 chrII:13665421-13665501 1.0000 80 chrX:12634000-12634080 1.0000 80 chrX:670788-670868 1.0000 80 chrX:12844363-12844443 1.0000 80 chrIV:6880574-6880654 1.0000 80 chrV:9255640-9255720 1.0000 80 chrIV:2618761-2618841 1.0000 80 chrV:6238549-6238629 1.0000 80 chrII:4747173-4747253 1.0000 80 chrIV:8043875-8043955 1.0000 80 chrV:10776856-10776936 1.0000 80 chrII:6176632-6176712 1.0000 80 chrI:2761081-2761161 1.0000 80 chrV:3312394-3312474 1.0000 80 chrII:7238401-7238481 1.0000 80 chrX:4664652-4664732 1.0000 80 chrII:10529481-10529561 1.0000 80 chrIV:10463271-10463351 1.0000 80 chrIV:10964862-10964942 1.0000 80 chrIII:9930518-9930598 1.0000 80 chrX:15380059-15380139 1.0000 80 chrII:13680010-13680090 1.0000 80 chrIV:5756137-5756217 1.0000 80 chrX:6059517-6059597 1.0000 80 chrII:9493599-9493679 1.0000 80 chrV:10098631-10098711 1.0000 80 chrII:5104240-5104320 1.0000 80 chrV:5512682-5512762 1.0000 80 chrV:16278080-16278160 1.0000 80 chrI:9149352-9149432 1.0000 80 chrIV:5780542-5780622 1.0000 80 chrX:5645781-5645861 1.0000 80 chrX:5661283-5661363 1.0000 80 chrX:10903582-10903662 1.0000 80 chrII:13145365-13145445 1.0000 80 chrIV:2149471-2149551 1.0000 80 chrII:4874600-4874680 1.0000 80 chrV:1456798-1456878 1.0000 80 chrI:5375630-5375710 1.0000 80 chrIV:3310994-3311074 1.0000 80 chrX:6321170-6321250 1.0000 80 chrV:7748135-7748215 1.0000 80 chrX:6536852-6536932 1.0000 80 chrV:10726735-10726815 1.0000 80 chrIV:13327195-13327275 1.0000 80 chrX:3362554-3362634 1.0000 80 chrV:11941810-11941890 1.0000 80 chrII:8739097-8739177 1.0000 80 chrII:5323931-5324011 1.0000 80 chrV:5769663-5769743 1.0000 80 chrV:11543750-11543830 1.0000 80 chrII:8822861-8822941 1.0000 80 chrV:3193230-3193310 1.0000 80 chrX:13360784-13360864 1.0000 80 chrV:12797029-12797109 1.0000 80 chrV:4918865-4918945 1.0000 80 chrX:3054710-3054790 1.0000 80 chrI:12501365-12501445 1.0000 80 chrV:10002872-10002952 1.0000 80 chrV:11094843-11094923 1.0000 80 chrV:8270033-8270113 1.0000 80 chrII:15251769-15251849 1.0000 80 chrV:11800722-11800802 1.0000 80 chrX:10532366-10532446 1.0000 80 chrIV:4478769-4478849 1.0000 80 chrV:14830391-14830471 1.0000 80 chrV:15354825-15354905 1.0000 80 chrX:15704771-15704851 1.0000 80 chrIV:11503774-11503854 1.0000 80 chrX:6325794-6325874 1.0000 80 chrV:10485544-10485624 1.0000 80 chrV:6351221-6351301 1.0000 80 chrV:7786817-7786897 1.0000 80 chrIII:9454861-9454941 1.0000 80 chrV:11801592-11801672 1.0000 80 chrX:12197507-12197587 1.0000 80 chrII:12053282-12053362 1.0000 80 chrII:4821986-4822066 1.0000 80 chrV:11739927-11740007 1.0000 80 chrX:12781859-12781939 1.0000 80 chrV:5110829-5110909 1.0000 80 chrV:12349592-12349672 1.0000 80 chrII:4804892-4804972 1.0000 80 chrX:3838803-3838883 1.0000 80 chrX:2422303-2422383 1.0000 80 chrV:6354284-6354364 1.0000 80 chrV:18701497-18701577 1.0000 80 chrIV:7233620-7233700 1.0000 80 chrV:16213525-16213605 1.0000 80 chrV:11859218-11859298 1.0000 80 chrX:6025168-6025248 1.0000 80 chrII:6701696-6701776 1.0000 80 chrII:11056207-11056287 1.0000 80 chrIV:11897874-11897954 1.0000 80 chrV:6243451-6243531 1.0000 80 chrX:11608548-11608628 1.0000 80 chrIII:5921483-5921563 1.0000 80 chrX:3835827-3835907 1.0000 80 chrIV:8532954-8533034 1.0000 80 chrX:7291411-7291491 1.0000 80 chrIII:8709926-8710006 1.0000 80 chrIV:10784240-10784320 1.0000 80 chrIII:4412276-4412356 1.0000 80 chrX:5628611-5628691 1.0000 80 chrIV:3652395-3652475 1.0000 80 chrI:6389756-6389836 1.0000 80 chrV:9079015-9079095 1.0000 80 chrII:8648318-8648398 1.0000 80 chrV:20499105-20499185 1.0000 80 chrV:11975401-11975481 1.0000 80 chrIII:1002655-1002735 1.0000 80 chrX:10767682-10767762 1.0000 80 chrII:11372122-11372202 1.0000 80 chrX:16346633-16346713 1.0000 80 chrV:11009157-11009237 1.0000 80 chrV:1789634-1789714 1.0000 80 chrIV:4300135-4300215 1.0000 80 chrIII:6850387-6850467 1.0000 80 chrII:2802964-2803044 1.0000 80 chrII:14838757-14838837 1.0000 80 chrX:5339504-5339584 1.0000 80 chrII:7944537-7944617 1.0000 80 chrX:3290238-3290318 1.0000 80 chrV:12199559-12199639 1.0000 80 chrI:10753106-10753186 1.0000 80 chrIV:13026849-13026929 1.0000 80 chrIV:12842318-12842398 1.0000 80 chrI:8864189-8864269 1.0000 80 chrV:5813250-5813330 1.0000 80 chrI:6416943-6417023 1.0000 80 chrIV:8532194-8532274 1.0000 80 chrX:10952075-10952155 1.0000 80 chrX:15079485-15079565 1.0000 80 chrX:3283349-3283429 1.0000 80 chrIV:10761500-10761580 1.0000 80 chrIV:2855499-2855579 1.0000 80 chrII:13166051-13166131 1.0000 80 chrIV:12601152-12601232 1.0000 80 chrV:3632388-3632468 1.0000 80 chrX:7985688-7985768 1.0000 80 chrII:5702907-5702987 1.0000 80 chrV:13012025-13012105 1.0000 80 chrIV:17245357-17245437 1.0000 80 chrIII:9661299-9661379 1.0000 80 chrIV:8241571-8241651 1.0000 80 chrV:418226-418306 1.0000 80 chrI:2665919-2665999 1.0000 80 chrIII:5472905-5472985 1.0000 80 chrV:5816492-5816572 1.0000 80 chrII:11841827-11841907 1.0000 80 chrX:12172963-12173043 1.0000 80 chrX:17424016-17424096 1.0000 80 chrX:6530775-6530855 1.0000 80 chrIV:13725303-13725383 1.0000 80 chrX:3117298-3117378 1.0000 80 chrIV:9651331-9651411 1.0000 80 chrX:15700376-15700456 1.0000 80 chrIII:3104722-3104802 1.0000 80 chrI:6556268-6556348 1.0000 80 chrX:4883580-4883660 1.0000 80 chrV:8661688-8661768 1.0000 80 chrII:12961404-12961484 1.0000 80 chrV:9218841-9218921 1.0000 80 chrII:13468126-13468206 1.0000 80 chrV:20871390-20871470 1.0000 80 chrII:8818456-8818536 1.0000 80 chrIII:7305190-7305270 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/worm/inference_raw/MEME/RankLinear2.0_40_nhr-48/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/worm/fasta/RankLinear2.0_40/nhr-48.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.295 C 0.201 G 0.208 T 0.297 Background letter frequencies (from file dataset with add-one prior applied): A 0.295 C 0.201 G 0.208 T 0.297 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF TSACGTSA MEME-1 width = 8 sites = 26 llr = 231 E-value = 5.8e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif TSACGTSA MEME-1 Description -------------------------------------------------------------------------------- Simplified A ::a::::7 pos.-specific C 34:a::5: probability G :6::a:53 matrix T 7::::a:: bits 2.3 ** 2.1 ** 1.9 **** 1.6 **** Relative 1.4 ****** Entropy 1.2 ******* (12.8 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TGACGTCA consensus CC GG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TSACGTSA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrII:12053282-12053362 43 1.34e-05 ccaaaaaaag tgacgtca gcacgctctt chrX:15704771-15704851 27 1.34e-05 ATCATTCAAG TGACGTCA CGTGTGCACA chrIV:4212969-4213049 71 1.34e-05 CTGAAAATAG TGACGTCA CT chrIV:12879752-12879832 45 1.34e-05 CACAAGTGGA TGACGTCA GCTTTTCCTG chrV:7543881-7543961 41 1.34e-05 AGGATACTGA TGACGTCA TAATGATGGA chrV:3197098-3197178 18 1.34e-05 GAACAAGAAA TGACGTCA AATGCGTACC chrX:6025168-6025248 6 2.73e-05 CTTAG TGACGTGA ATAAGTTTTG chrIV:2855499-2855579 43 4.03e-05 TAAGCACGGA TCACGTCA TTTGTCATTT chrV:11859218-11859298 30 6.31e-05 ATTCCATTGA TCACGTGA TATCCGTTCA chrV:11739927-11740007 43 6.31e-05 aaaaccaaaC TGACGTCG TGATGCGATG chrX:5645781-5645861 52 6.31e-05 GTATCAGTCT TCACGTGA AATGAAGAAA chrII:4747173-4747253 45 6.31e-05 TAAAGTGGAT TCACGTGA TTCATTCACG chrV:10878323-10878403 8 6.31e-05 TATCAGC TGACGTCG AAGATTCGTG chrIII:6179204-6179284 52 6.31e-05 TATAATCAAT TGACGTCG ATGGAAAACT chrIV:633716-633796 62 6.31e-05 GTGAAAATTT TCACGTGA TTCGTGTGTT chrX:5647113-5647193 42 6.31e-05 CTTGACAATA TGACGTCG TAAATTATAG chrV:11975401-11975481 60 8.20e-05 CGAAGCTTTT CGACGTCA AGAACTAGAG chrII:11247813-11247893 63 8.20e-05 GTTGAAAGTT CGACGTCA GTTTATCTTT chrIV:2149471-2149551 8 1.01e-04 AGGAAGA CGACGTGA TGAAACGCGT chrIV:13725303-13725383 20 1.19e-04 CCACGAAAAG TCACGTGG AGAGAAAAAG chrII:11841827-11841907 9 1.19e-04 TAAACTTG TCACGTGG AAAGGGCATG chrIII:6850387-6850467 37 1.19e-04 TCATCATCTC TCACGTGG ACACACGTTT chrX:16346633-16346713 72 1.34e-04 TCAATATGGT CCACGTGA G chrIV:8532954-8533034 13 1.34e-04 CAACTCGTCC CCACGTGA ATGTGCCTGT chrII:13669033-13669113 56 1.34e-04 AAAAGCCTGA CGACGTCG CGACGTTGTC chrX:15316052-15316132 20 1.34e-04 cactctgaca ccacgtga gaaaccagat -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TSACGTSA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:12053282-12053362 1.3e-05 42_[+1]_30 chrX:15704771-15704851 1.3e-05 26_[+1]_46 chrIV:4212969-4213049 1.3e-05 70_[+1]_2 chrIV:12879752-12879832 1.3e-05 44_[+1]_28 chrV:7543881-7543961 1.3e-05 40_[+1]_32 chrV:3197098-3197178 1.3e-05 17_[+1]_55 chrX:6025168-6025248 2.7e-05 5_[+1]_67 chrIV:2855499-2855579 4e-05 42_[+1]_30 chrV:11859218-11859298 6.3e-05 29_[+1]_43 chrV:11739927-11740007 6.3e-05 42_[+1]_30 chrX:5645781-5645861 6.3e-05 51_[+1]_21 chrII:4747173-4747253 6.3e-05 44_[+1]_28 chrV:10878323-10878403 6.3e-05 7_[+1]_65 chrIII:6179204-6179284 6.3e-05 51_[+1]_21 chrIV:633716-633796 6.3e-05 61_[+1]_11 chrX:5647113-5647193 6.3e-05 41_[+1]_31 chrV:11975401-11975481 8.2e-05 59_[+1]_13 chrII:11247813-11247893 8.2e-05 62_[+1]_10 chrIV:2149471-2149551 0.0001 7_[+1]_65 chrIV:13725303-13725383 0.00012 19_[+1]_53 chrII:11841827-11841907 0.00012 8_[+1]_64 chrIII:6850387-6850467 0.00012 36_[+1]_36 chrX:16346633-16346713 0.00013 71_[+1]_1 chrIV:8532954-8533034 0.00013 12_[+1]_60 chrII:13669033-13669113 0.00013 55_[+1]_17 chrX:15316052-15316132 0.00013 19_[+1]_53 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TSACGTSA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TSACGTSA width=8 seqs=26 chrII:12053282-12053362 ( 43) TGACGTCA 1 chrX:15704771-15704851 ( 27) TGACGTCA 1 chrIV:4212969-4213049 ( 71) TGACGTCA 1 chrIV:12879752-12879832 ( 45) TGACGTCA 1 chrV:7543881-7543961 ( 41) TGACGTCA 1 chrV:3197098-3197178 ( 18) TGACGTCA 1 chrX:6025168-6025248 ( 6) TGACGTGA 1 chrIV:2855499-2855579 ( 43) TCACGTCA 1 chrV:11859218-11859298 ( 30) TCACGTGA 1 chrV:11739927-11740007 ( 43) TGACGTCG 1 chrX:5645781-5645861 ( 52) TCACGTGA 1 chrII:4747173-4747253 ( 45) TCACGTGA 1 chrV:10878323-10878403 ( 8) TGACGTCG 1 chrIII:6179204-6179284 ( 52) TGACGTCG 1 chrIV:633716-633796 ( 62) TCACGTGA 1 chrX:5647113-5647193 ( 42) TGACGTCG 1 chrV:11975401-11975481 ( 60) CGACGTCA 1 chrII:11247813-11247893 ( 63) CGACGTCA 1 chrIV:2149471-2149551 ( 8) CGACGTGA 1 chrIV:13725303-13725383 ( 20) TCACGTGG 1 chrII:11841827-11841907 ( 9) TCACGTGG 1 chrIII:6850387-6850467 ( 37) TCACGTGG 1 chrX:16346633-16346713 ( 72) CCACGTGA 1 chrIV:8532954-8533034 ( 13) CCACGTGA 1 chrII:13669033-13669113 ( 56) CGACGTCG 1 chrX:15316052-15316132 ( 20) CCACGTGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TSACGTSA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.98426 E= 5.8e-001 -1134 43 -1134 130 -1134 108 147 -1134 176 -1134 -1134 -1134 -1134 232 -1134 -1134 -1134 -1134 227 -1134 -1134 -1134 -1134 175 -1134 142 115 -1134 123 -1134 57 -1134 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TSACGTSA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 26 E= 5.8e-001 0.000000 0.269231 0.000000 0.730769 0.000000 0.423077 0.576923 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.538462 0.461538 0.000000 0.692308 0.000000 0.307692 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TSACGTSA MEME-1 regular expression -------------------------------------------------------------------------------- [TC][GC]ACGT[CG][AG] -------------------------------------------------------------------------------- Time 5.54 secs. ******************************************************************************** ******************************************************************************** MOTIF GARAAVAA MEME-2 width = 8 sites = 71 llr = 498 E-value = 1.3e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif GARAAVAA MEME-2 Description -------------------------------------------------------------------------------- Simplified A 2a4aa4a8 pos.-specific C 1::::2:: probability G 7:4::4:2 matrix T ::2::::: bits 2.3 2.1 1.9 * * * 1.6 * ** * Relative 1.4 * ** * Entropy 1.2 * ** ** (10.1 bits) 0.9 ** ** ** 0.7 ** ** ** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GAAAAGAA consensus A G A sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GARAAVAA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIV:4300135-4300215 9 2.01e-05 GATCTGAT GAGAAGAA GCTTAAggcg chrX:10532366-10532446 49 2.01e-05 ATAGTTGTTA GAGAAGAA AATGACTATT chrV:13607022-13607102 45 2.01e-05 GAATACAATA GAGAAGAA AAAAAGATGA chrV:8288582-8288662 29 2.01e-05 AGGGAAGTGA GAGAAGAA GCTCTGAGTG chrV:8661688-8661768 66 4.86e-05 ATCAATTAGT GAAAAGAA GAGCATT chrIV:5780542-5780622 18 4.86e-05 GGAAGAGATG GAAAAGAA ATGACTTTTT chrI:9313946-9314026 57 4.86e-05 CGCCTTGCAT GAAAAGAA TTTCAAAGTT chrII:8854161-8854241 3 4.86e-05 GG GAAAAGAA GATTCATTCA chrIV:13725303-13725383 29 7.71e-05 GTCACGTGGA GAGAAAAA GAGAGCCGTG chrII:2802964-2803044 45 7.71e-05 TTTTGGGGGT GAGAAAAA AAAACGAATA chrV:12349592-12349672 44 7.71e-05 ATTTCTAATT GAGAAAAA CTAAACAAAA chrV:3312394-3312474 65 7.71e-05 GAGAGCCGCA GAGAAAAA GAGGGAAC chrIII:10150839-10150919 64 7.71e-05 AGAGGATTTA GAGAAAAA TGACTCGGC chrII:13640403-13640483 24 7.71e-05 gagagataga gagaAAAA CAAAAGACGC chrIV:12601152-12601232 35 9.66e-05 AGGAGTACAC GAGAACAA GACATAAATA chrI:2761081-2761161 73 9.66e-05 GGTACAAGCA GAGAACAA chrV:3197098-3197178 6 9.66e-05 AAAAG GAGAACAA GAAATGACGT chrX:3362554-3362634 43 1.37e-04 TTTTATTTCG GAAAAAAA AGAAAAAAAA chrX:15380059-15380139 54 1.37e-04 CTAACTCACA GAAAAAAA GTTAAACTTG chrIV:6880574-6880654 19 1.37e-04 TCAAAATTCC GAAAAAAA TGATTATATG chrII:9493400-9493480 20 1.37e-04 GAAAAAGTGT GAAAAAAA AAAGAAAAGT chrIII:3529936-3530016 25 1.37e-04 TGTCAGAACA GAAAAAAA TGGAAAAATT chrI:6556268-6556348 1 1.93e-04 . GATAAGAA TTGATTGATG chrIII:3104722-3104802 29 1.93e-04 GAGAATTAGA GAAAACAA GTGAAAAAGG chrIV:9651331-9651411 31 1.93e-04 TATCTAGTCC GATAAGAA GGCATGATGC chrV:12199559-12199639 70 1.93e-04 CAATAGCAAT GATAAGAA ACG chrV:11975401-11975481 4 1.93e-04 ACT GATAAGAA GAAAAGGAAG chrII:4821986-4822066 10 1.93e-04 AGAGGGATG GATAAGAA AGTGATGAGT chrII:7238401-7238481 37 1.93e-04 TGTGTTCATT GATAAGAA TTTGAGTGCT chrI:7243861-7243941 16 1.93e-04 TAATAGTTGT GATAAGAA AGATAAAAGA chrX:4564962-4565042 2 1.93e-04 A GATAAGAA GAATTCATAA chrIV:2413813-2413893 73 1.93e-04 GATTTAGACG GATAAGAA chrIV:8254362-8254442 52 1.93e-04 AGTGAAACAA GAAAACAA AGAAACAGGA chrII:13468126-13468206 32 2.07e-04 CTGGAACTCG GAGAAGAG TTGTACGTCG chrV:13243380-13243460 23 2.07e-04 AACATGATTT GAGAAGAG TGTCCGAGGG chrV:9218841-9218921 57 2.28e-04 TAAGAGAACG GAAAAGAG AGAACGAAGC chrX:3835827-3835907 14 2.28e-04 GATAGAATAC GAAAAGAG GTACGCATGC chrX:7985688-7985768 35 2.97e-04 AAAATCGTAG AAGAAGAA ACGCAGTTGT chrII:8648318-8648398 27 2.97e-04 CATTAGGATT GATAAAAA GTAATACAAC chrIV:11897874-11897954 4 2.97e-04 CAT GATAAAAA GTGGGTAACA chrX:3838803-3838883 3 2.97e-04 AA AAGAAGAA GACGCAAAAA chrIV:10784240-10784320 53 3.45e-04 GGGTCATATT GATAACAA AAATGGATGG chrX:11608548-11608628 55 3.45e-04 TGTCTTTCCA GATAACAA GTGACAGTGA chrIV:13026849-13026929 9 3.99e-04 TTCCTCGA GAGAACAG AACGACATGG chrII:5323931-5324011 45 3.99e-04 TATAATATCA GAGAACAG ATGATCAATT chrV:12533710-12533790 20 3.99e-04 TTTTTTCGTA AAAAAGAA AACAGGTAGG chrV:3388518-3388598 46 3.99e-04 TCAACTAGTG AAAAAGAA ACAGATACAG chrI:6416943-6417023 59 4.27e-04 TTTGTCCAGG GAAAAAAG TGGGGTCAAT chrIII:8709926-8710006 68 4.27e-04 CCTTTTGATT GAAAAAAG TTTTC chrV:3193230-3193310 60 4.27e-04 AGAGACGTAA GAAAAAAG CGTTCGGAGA chrI:7740023-7740103 25 4.27e-04 TTTTTTTCTG GAAAAAAG AAGCAGCTTC chrII:11247813-11247893 26 4.27e-04 AAAGACAAAC GAAAAAAG GCGTCCGAAG chrV:20871390-20871470 68 4.68e-04 TTTGTATGTT AAGAAAAA TTCAT chrV:10776856-10776936 6 4.68e-04 ACGCC AAGAAAAA GAGAAGGTTA chrV:4433573-4433653 15 4.68e-04 GTGTTGGGTG AAGAAAAA TGTCAAGAAC chrII:8818456-8818536 37 5.27e-04 AGAGCATTGT GATAAGAG AAGTGGTGAT chrX:6321170-6321250 35 5.54e-04 CCTCGAAAGG AAGAACAA CTGTGGAAGC chrV:6238549-6238629 15 5.54e-04 AAAAAGGCGG AAGAACAA CTTGTTTCGT chrX:12781859-12781939 10 6.12e-04 ACAGGATTC AAAAAAAA TAGAGGACGT chrX:3117298-3117378 31 7.19e-04 ACTGCCCACA AAAAACAA AAAATAAGTT chrV:11800722-11800802 32 7.19e-04 AAATGAGGTG AAAAACAA TCAAATTATA chrV:16278080-16278160 44 7.19e-04 TTGCAACAAT AAAAACAA AATGTGCATC chrV:10726735-10726815 22 7.95e-04 TCGATTCTTG CAGAAAAA ATCGAGTTTG chrIV:5659091-5659171 62 7.95e-04 GTCGGCGTAG CAGAAAAA GTTCGAAAAA chrX:5645781-5645861 9 8.34e-04 TATGCAGA CAGAACAA GTTTTTGGCC chrII:12053282-12053362 34 9.01e-04 gatttttccc caaaaaaa gtgacgtcag chrV:9255640-9255720 34 9.01e-04 TTGAGAGTGG AAAAAGAG TACTATGACA chrX:15316052-15316132 66 9.01e-04 ttttggtgtt caaaaaaa cattaaa chrV:16100293-16100373 61 9.01e-04 AGTTTAAATT AAAAAGAG TATTTCGTAG chrX:14562761-14562841 68 9.01e-04 GAATTGCATT CAAAAAAA GTCTT chrV:10333976-10334056 31 1.47e-03 TTTTGCCTTC GAAAGGAA AAAATGACAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GARAAVAA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:4300135-4300215 2e-05 8_[+2]_64 chrX:10532366-10532446 2e-05 48_[+2]_24 chrV:13607022-13607102 2e-05 44_[+2]_28 chrV:8288582-8288662 2e-05 28_[+2]_44 chrV:8661688-8661768 4.9e-05 65_[+2]_7 chrIV:5780542-5780622 4.9e-05 17_[+2]_55 chrI:9313946-9314026 4.9e-05 56_[+2]_16 chrII:8854161-8854241 4.9e-05 2_[+2]_70 chrIV:13725303-13725383 7.7e-05 28_[+2]_44 chrII:2802964-2803044 7.7e-05 44_[+2]_28 chrV:12349592-12349672 7.7e-05 43_[+2]_29 chrV:3312394-3312474 7.7e-05 64_[+2]_8 chrIII:10150839-10150919 7.7e-05 63_[+2]_9 chrII:13640403-13640483 7.7e-05 23_[+2]_49 chrIV:12601152-12601232 9.7e-05 34_[+2]_38 chrI:2761081-2761161 9.7e-05 72_[+2] chrV:3197098-3197178 9.7e-05 5_[+2]_67 chrX:3362554-3362634 0.00014 42_[+2]_30 chrX:15380059-15380139 0.00014 53_[+2]_19 chrIV:6880574-6880654 0.00014 18_[+2]_54 chrII:9493400-9493480 0.00014 19_[+2]_53 chrIII:3529936-3530016 0.00014 24_[+2]_48 chrI:6556268-6556348 0.00019 [+2]_72 chrIII:3104722-3104802 0.00019 28_[+2]_44 chrIV:9651331-9651411 0.00019 30_[+2]_42 chrV:12199559-12199639 0.00019 69_[+2]_3 chrV:11975401-11975481 0.00019 3_[+2]_69 chrII:4821986-4822066 0.00019 9_[+2]_63 chrII:7238401-7238481 0.00019 36_[+2]_36 chrI:7243861-7243941 0.00019 15_[+2]_57 chrX:4564962-4565042 0.00019 1_[+2]_71 chrIV:2413813-2413893 0.00019 72_[+2] chrIV:8254362-8254442 0.00019 51_[+2]_21 chrII:13468126-13468206 0.00021 31_[+2]_41 chrV:13243380-13243460 0.00021 22_[+2]_50 chrV:9218841-9218921 0.00023 56_[+2]_16 chrX:3835827-3835907 0.00023 13_[+2]_59 chrX:7985688-7985768 0.0003 34_[+2]_38 chrII:8648318-8648398 0.0003 26_[+2]_46 chrIV:11897874-11897954 0.0003 3_[+2]_69 chrX:3838803-3838883 0.0003 2_[+2]_70 chrIV:10784240-10784320 0.00034 52_[+2]_20 chrX:11608548-11608628 0.00034 54_[+2]_18 chrIV:13026849-13026929 0.0004 8_[+2]_64 chrII:5323931-5324011 0.0004 44_[+2]_28 chrV:12533710-12533790 0.0004 19_[+2]_53 chrV:3388518-3388598 0.0004 45_[+2]_27 chrI:6416943-6417023 0.00043 58_[+2]_14 chrIII:8709926-8710006 0.00043 67_[+2]_5 chrV:3193230-3193310 0.00043 59_[+2]_13 chrI:7740023-7740103 0.00043 24_[+2]_48 chrII:11247813-11247893 0.00043 25_[+2]_47 chrV:20871390-20871470 0.00047 67_[+2]_5 chrV:10776856-10776936 0.00047 5_[+2]_67 chrV:4433573-4433653 0.00047 14_[+2]_58 chrII:8818456-8818536 0.00053 36_[+2]_36 chrX:6321170-6321250 0.00055 34_[+2]_38 chrV:6238549-6238629 0.00055 14_[+2]_58 chrX:12781859-12781939 0.00061 9_[+2]_63 chrX:3117298-3117378 0.00072 30_[+2]_42 chrV:11800722-11800802 0.00072 31_[+2]_41 chrV:16278080-16278160 0.00072 43_[+2]_29 chrV:10726735-10726815 0.0008 21_[+2]_51 chrIV:5659091-5659171 0.0008 61_[+2]_11 chrX:5645781-5645861 0.00083 8_[+2]_64 chrII:12053282-12053362 0.0009 33_[+2]_39 chrV:9255640-9255720 0.0009 33_[+2]_39 chrX:15316052-15316132 0.0009 65_[+2]_7 chrV:16100293-16100373 0.0009 60_[+2]_12 chrX:14562761-14562841 0.0009 67_[+2]_5 chrV:10333976-10334056 0.0015 30_[+2]_42 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GARAAVAA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GARAAVAA width=8 seqs=71 chrIV:4300135-4300215 ( 9) GAGAAGAA 1 chrX:10532366-10532446 ( 49) GAGAAGAA 1 chrV:13607022-13607102 ( 45) GAGAAGAA 1 chrV:8288582-8288662 ( 29) GAGAAGAA 1 chrV:8661688-8661768 ( 66) GAAAAGAA 1 chrIV:5780542-5780622 ( 18) GAAAAGAA 1 chrI:9313946-9314026 ( 57) GAAAAGAA 1 chrII:8854161-8854241 ( 3) GAAAAGAA 1 chrIV:13725303-13725383 ( 29) GAGAAAAA 1 chrII:2802964-2803044 ( 45) GAGAAAAA 1 chrV:12349592-12349672 ( 44) GAGAAAAA 1 chrV:3312394-3312474 ( 65) GAGAAAAA 1 chrIII:10150839-10150919 ( 64) GAGAAAAA 1 chrII:13640403-13640483 ( 24) GAGAAAAA 1 chrIV:12601152-12601232 ( 35) GAGAACAA 1 chrI:2761081-2761161 ( 73) GAGAACAA 1 chrV:3197098-3197178 ( 6) GAGAACAA 1 chrX:3362554-3362634 ( 43) GAAAAAAA 1 chrX:15380059-15380139 ( 54) GAAAAAAA 1 chrIV:6880574-6880654 ( 19) GAAAAAAA 1 chrII:9493400-9493480 ( 20) GAAAAAAA 1 chrIII:3529936-3530016 ( 25) GAAAAAAA 1 chrI:6556268-6556348 ( 1) GATAAGAA 1 chrIII:3104722-3104802 ( 29) GAAAACAA 1 chrIV:9651331-9651411 ( 31) GATAAGAA 1 chrV:12199559-12199639 ( 70) GATAAGAA 1 chrV:11975401-11975481 ( 4) GATAAGAA 1 chrII:4821986-4822066 ( 10) GATAAGAA 1 chrII:7238401-7238481 ( 37) GATAAGAA 1 chrI:7243861-7243941 ( 16) GATAAGAA 1 chrX:4564962-4565042 ( 2) GATAAGAA 1 chrIV:2413813-2413893 ( 73) GATAAGAA 1 chrIV:8254362-8254442 ( 52) GAAAACAA 1 chrII:13468126-13468206 ( 32) GAGAAGAG 1 chrV:13243380-13243460 ( 23) GAGAAGAG 1 chrV:9218841-9218921 ( 57) GAAAAGAG 1 chrX:3835827-3835907 ( 14) GAAAAGAG 1 chrX:7985688-7985768 ( 35) AAGAAGAA 1 chrII:8648318-8648398 ( 27) GATAAAAA 1 chrIV:11897874-11897954 ( 4) GATAAAAA 1 chrX:3838803-3838883 ( 3) AAGAAGAA 1 chrIV:10784240-10784320 ( 53) GATAACAA 1 chrX:11608548-11608628 ( 55) GATAACAA 1 chrIV:13026849-13026929 ( 9) GAGAACAG 1 chrII:5323931-5324011 ( 45) GAGAACAG 1 chrV:12533710-12533790 ( 20) AAAAAGAA 1 chrV:3388518-3388598 ( 46) AAAAAGAA 1 chrI:6416943-6417023 ( 59) GAAAAAAG 1 chrIII:8709926-8710006 ( 68) GAAAAAAG 1 chrV:3193230-3193310 ( 60) GAAAAAAG 1 chrI:7740023-7740103 ( 25) GAAAAAAG 1 chrII:11247813-11247893 ( 26) GAAAAAAG 1 chrV:20871390-20871470 ( 68) AAGAAAAA 1 chrV:10776856-10776936 ( 6) AAGAAAAA 1 chrV:4433573-4433653 ( 15) AAGAAAAA 1 chrII:8818456-8818536 ( 37) GATAAGAG 1 chrX:6321170-6321250 ( 35) AAGAACAA 1 chrV:6238549-6238629 ( 15) AAGAACAA 1 chrX:12781859-12781939 ( 10) AAAAAAAA 1 chrX:3117298-3117378 ( 31) AAAAACAA 1 chrV:11800722-11800802 ( 32) AAAAACAA 1 chrV:16278080-16278160 ( 44) AAAAACAA 1 chrV:10726735-10726815 ( 22) CAGAAAAA 1 chrIV:5659091-5659171 ( 62) CAGAAAAA 1 chrX:5645781-5645861 ( 9) CAGAACAA 1 chrII:12053282-12053362 ( 34) CAAAAAAA 1 chrV:9255640-9255720 ( 34) AAAAAGAG 1 chrX:15316052-15316132 ( 66) CAAAAAAA 1 chrV:16100293-16100373 ( 61) AAAAAGAG 1 chrX:14562761-14562841 ( 68) CAAAAAAA 1 chrV:10333976-10334056 ( 31) GAAAGGAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GARAAVAA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.83776 E= 1.3e+000 -48 -125 176 -1279 176 -1279 -1279 -1279 52 -1279 87 -59 176 -1279 -1279 -1279 174 -1279 -388 -1279 37 8 97 -1279 176 -1279 -1279 -1279 144 -1279 -8 -1279 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GARAAVAA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 71 E= 1.3e+000 0.211268 0.084507 0.704225 0.000000 1.000000 0.000000 0.000000 0.000000 0.422535 0.000000 0.380282 0.197183 1.000000 0.000000 0.000000 0.000000 0.985915 0.000000 0.014085 0.000000 0.380282 0.211268 0.408451 0.000000 1.000000 0.000000 0.000000 0.000000 0.802817 0.000000 0.197183 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GARAAVAA MEME-2 regular expression -------------------------------------------------------------------------------- [GA]A[AG]AA[GAC]AA -------------------------------------------------------------------------------- Time 10.48 secs. ******************************************************************************** ******************************************************************************** MOTIF TGYACYSA MEME-3 width = 8 sites = 26 llr = 228 E-value = 2.4e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGYACYSA MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::a:::a pos.-specific C 3:7:a76: probability G :a::::4: matrix T 7:3::3:: bits 2.3 * * 2.1 * * 1.9 * ** 1.6 * ** * Relative 1.4 * ** ** Entropy 1.2 ******* (12.6 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TGCACCCA consensus C T TG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGYACYSA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:12874074-12874154 6 8.78e-06 CACAC TGCACCCA GCCTCTGCTG chrII:8816702-8816782 36 8.78e-06 GTCTACCATA TGCACCCA GGATGTACCG chrIII:6216041-6216121 17 8.78e-06 ATATTCATAC TGCACCCA GAACGCCCTC chrII:13470691-13470771 3 8.78e-06 AG TGCACCCA AAACCTGCAA chrI:9108842-9108922 14 8.78e-06 TGAGTACACA TGCACCCA CGTATTTTCG chrIII:13066944-13067024 11 1.47e-05 GACACACCGG CGCACCCA CAAGTACACA chrIII:10150839-10150919 25 1.47e-05 CCGGTACACA CGCACCCA TTCTCTAAGA chrV:15354825-15354905 54 2.38e-05 TTTTTGTCAC TGCACCGA GATTACGTCA chrV:10776856-10776936 58 2.38e-05 AGAAGGAATG TGCACCGA CGGAATGCTG chrX:4564962-4565042 49 2.99e-05 CGCAACTCTT CGCACCGA AGAGGTGCAA chrII:8263724-8263804 26 5.59e-05 TTCCTTCTAC TGCACTCA GTTCGTCATG chrII:9493400-9493480 49 5.59e-05 GAGTGCGCGG TGTACCCA AATAATTCCT chrX:10768928-10769008 25 5.59e-05 TGAGTGCACG TGCACTCA TCCTGCCTCA chrV:12410764-12410844 71 7.34e-05 ACCTATTATG CGTACCCA AA chrI:7243861-7243941 64 7.34e-05 GTGATGATAA CGTACCCA GATTGATAT chrV:3197098-3197178 30 7.34e-05 ACGTCAAATG CGTACCCA CAGGAGGAAA chrIII:4412276-4412356 69 1.00e-04 TGCGAACTCG TGCACTGA GGTC chrV:11801592-11801672 34 1.00e-04 AGATAGAAAG TGCACTGA TTCGACATGA chrX:6536852-6536932 46 1.00e-04 CGTAAGCACC TGTACCGA AGACTGTCAG chrIV:2413813-2413893 32 1.00e-04 GGGGTGCACC TGCACTGA CCAGCAAAGA chrIV:10216268-10216348 73 1.00e-04 TTGGAAAGTG TGTACCGA chrV:8288582-8288662 51 1.00e-04 TGAGTGCTCT TGCACTGA GTGCGCTATG chrV:14830391-14830471 15 1.38e-04 TTCCGCACTT TGTACTCA TCAATGATCT chrIV:10784240-10784320 20 1.51e-04 GGGTGCGCAA CGTACTCA TCCATTTCTG chrX:5647113-5647193 7 1.51e-04 CCCAAA CGTACTCA CTTATACAGC chrX:12186291-12186371 45 2.01e-04 CAGGGTCATG TGCACCGG AATAGAATGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGYACYSA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:12874074-12874154 8.8e-06 5_[+3]_67 chrII:8816702-8816782 8.8e-06 35_[+3]_37 chrIII:6216041-6216121 8.8e-06 16_[+3]_56 chrII:13470691-13470771 8.8e-06 2_[+3]_70 chrI:9108842-9108922 8.8e-06 13_[+3]_59 chrIII:13066944-13067024 1.5e-05 10_[+3]_62 chrIII:10150839-10150919 1.5e-05 24_[+3]_48 chrV:15354825-15354905 2.4e-05 53_[+3]_19 chrV:10776856-10776936 2.4e-05 57_[+3]_15 chrX:4564962-4565042 3e-05 48_[+3]_24 chrII:8263724-8263804 5.6e-05 25_[+3]_47 chrII:9493400-9493480 5.6e-05 48_[+3]_24 chrX:10768928-10769008 5.6e-05 24_[+3]_48 chrV:12410764-12410844 7.3e-05 70_[+3]_2 chrI:7243861-7243941 7.3e-05 63_[+3]_9 chrV:3197098-3197178 7.3e-05 29_[+3]_43 chrIII:4412276-4412356 0.0001 68_[+3]_4 chrV:11801592-11801672 0.0001 33_[+3]_39 chrX:6536852-6536932 0.0001 45_[+3]_27 chrIV:2413813-2413893 0.0001 31_[+3]_41 chrIV:10216268-10216348 0.0001 72_[+3] chrV:8288582-8288662 0.0001 50_[+3]_22 chrV:14830391-14830471 0.00014 14_[+3]_58 chrIV:10784240-10784320 0.00015 19_[+3]_53 chrX:5647113-5647193 0.00015 6_[+3]_66 chrX:12186291-12186371 0.0002 44_[+3]_28 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGYACYSA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGYACYSA width=8 seqs=26 chrX:12874074-12874154 ( 6) TGCACCCA 1 chrII:8816702-8816782 ( 36) TGCACCCA 1 chrIII:6216041-6216121 ( 17) TGCACCCA 1 chrII:13470691-13470771 ( 3) TGCACCCA 1 chrI:9108842-9108922 ( 14) TGCACCCA 1 chrIII:13066944-13067024 ( 11) CGCACCCA 1 chrIII:10150839-10150919 ( 25) CGCACCCA 1 chrV:15354825-15354905 ( 54) TGCACCGA 1 chrV:10776856-10776936 ( 58) TGCACCGA 1 chrX:4564962-4565042 ( 49) CGCACCGA 1 chrII:8263724-8263804 ( 26) TGCACTCA 1 chrII:9493400-9493480 ( 49) TGTACCCA 1 chrX:10768928-10769008 ( 25) TGCACTCA 1 chrV:12410764-12410844 ( 71) CGTACCCA 1 chrI:7243861-7243941 ( 64) CGTACCCA 1 chrV:3197098-3197178 ( 30) CGTACCCA 1 chrIII:4412276-4412356 ( 69) TGCACTGA 1 chrV:11801592-11801672 ( 34) TGCACTGA 1 chrX:6536852-6536932 ( 46) TGTACCGA 1 chrIV:2413813-2413893 ( 32) TGCACTGA 1 chrIV:10216268-10216348 ( 73) TGTACCGA 1 chrV:8288582-8288662 ( 51) TGCACTGA 1 chrV:14830391-14830471 ( 15) TGTACTCA 1 chrIV:10784240-10784320 ( 20) CGTACTCA 1 chrX:5647113-5647193 ( 7) CGTACTCA 1 chrX:12186291-12186371 ( 45) TGCACCGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGYACYSA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.6186 E= 2.4e+000 -1134 62 -1134 122 -1134 -1134 227 -1134 -1134 170 -1134 22 176 -1134 -1134 -1134 -1134 232 -1134 -1134 -1134 170 -1134 22 -1134 162 89 -1134 170 -1134 -243 -1134 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGYACYSA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 26 E= 2.4e+000 0.000000 0.307692 0.000000 0.692308 0.000000 0.000000 1.000000 0.000000 0.000000 0.653846 0.000000 0.346154 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.653846 0.000000 0.346154 0.000000 0.615385 0.384615 0.000000 0.961538 0.000000 0.038462 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGYACYSA MEME-3 regular expression -------------------------------------------------------------------------------- [TC]G[CT]AC[CT][CG]A -------------------------------------------------------------------------------- Time 14.82 secs. ******************************************************************************** ******************************************************************************** MOTIF THTTATCA MEME-4 width = 8 sites = 32 llr = 270 E-value = 2.0e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif THTTATCA MEME-4 Description -------------------------------------------------------------------------------- Simplified A :2::a::a pos.-specific C :4:3::a: probability G :1:::::: matrix T a3a8:a:: bits 2.3 * 2.1 * 1.9 * * *** 1.6 * * **** Relative 1.4 * * **** Entropy 1.2 * ****** (12.2 bits) 0.9 * ****** 0.7 * ****** 0.5 * ****** 0.2 ******** 0.0 -------- Multilevel TCTTATCA consensus T C sequence A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif THTTATCA MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrV:418226-418306 21 2.74e-05 AAACATTTTT TCTTATCA AGTTGTCAAA chrIII:1002655-1002735 36 2.74e-05 AAACTTGACG TCTTATCA GTGATTCTGA chrI:6389756-6389836 15 2.74e-05 ACTGGAGTTG TCTTATCA GACACAGTCA chrV:18701497-18701577 36 2.74e-05 ATATTGTGCA TCTTATCA GTTTGACCAG chrII:5323931-5324011 73 2.74e-05 CCATAGTGTC TCTTATCA chrV:11941810-11941890 65 2.74e-05 TAGCAGCTCC TCTTATCA ATTTTGAA chrII:13004288-13004368 70 2.74e-05 CACAAAGTTG TCTTATCA ATA chrII:7277378-7277458 38 2.74e-05 CTTTTCACTG TCTTATCA GTGTCACCGA chrX:15761163-15761243 1 2.74e-05 . TCTTATCA TACATTATTT chrX:3117298-3117378 49 6.78e-05 AAAATAAGTT TTTTATCA GTATTCGATA chrII:15251769-15251849 7 6.78e-05 TTATCA TTTTATCA GCTGTGCAAT chrIV:10463271-10463351 38 6.78e-05 TTCTGCGCGT TTTTATCA AGAAACAGAC chrI:11491457-11491537 5 6.78e-05 TGTT TTTTATCA CCTTATCACA chrX:13339321-13339401 58 6.78e-05 CCTCGGAGGA TTTTATCA ACCAGTAGGA chrV:6251329-6251409 70 6.78e-05 ATTTAACTAT TTTTATCA GTT chrIV:12879752-12879832 12 6.78e-05 ATAGTACACT TTTTATCA GAAGATTTCT chrIII:6850387-6850467 25 8.63e-05 TTCTCTGGGC TCTCATCA TCTCTCACGT chrV:11859218-11859298 52 8.63e-05 CGTTCACCGT TCTCATCA TCTCAGGCTT chrX:16346633-16346713 50 1.26e-04 TCAGTGATGT TATTATCA ACTCTCAATA chrII:8739097-8739177 47 1.26e-04 GAATCTTTAA TATTATCA TCTCATAAAC chrII:13665421-13665501 12 1.26e-04 AAGTGTGTAC TATTATCA GTTATCACCA chrV:14725503-14725583 5 1.26e-04 ACAA TATTATCA ATCACATGAA chrI:10753106-10753186 50 1.54e-04 TCTTTGATCA TTTCATCA TACATTGCCA chrX:7291411-7291491 28 1.54e-04 TAACACTTTT TTTCATCA TTCGCTGTGA chrV:12349592-12349672 16 1.54e-04 TCTTCAGTTC TTTCATCA ACATTATGGT chrIV:2855499-2855579 24 1.82e-04 TGCCAACTTT TGTTATCA TTAAGCACGG chrX:10952075-10952155 55 1.82e-04 ATCTATAAAT TGTTATCA GCAAGTTCCA chrII:7406572-7406652 21 1.82e-04 CCAATACACC TGTTATCA TCCAAAATGT chrV:8661688-8661768 52 2.09e-04 CCATAAAAGT TATCATCA ATTAGTGAAA chrIV:11503774-11503854 50 2.09e-04 ATGTTCTCAT TATCATCA AGATGATCAT chrIV:9634068-9634148 59 2.09e-04 TAGTAAAGCA TATCATCA CTTTTCTGTA chrIII:8709926-8710006 3 2.47e-04 AC TCTTCTCA CGTCTCGCAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif THTTATCA MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:418226-418306 2.7e-05 20_[+4]_52 chrIII:1002655-1002735 2.7e-05 35_[+4]_37 chrI:6389756-6389836 2.7e-05 14_[+4]_58 chrV:18701497-18701577 2.7e-05 35_[+4]_37 chrII:5323931-5324011 2.7e-05 72_[+4] chrV:11941810-11941890 2.7e-05 64_[+4]_8 chrII:13004288-13004368 2.7e-05 69_[+4]_3 chrII:7277378-7277458 2.7e-05 37_[+4]_35 chrX:15761163-15761243 2.7e-05 [+4]_72 chrX:3117298-3117378 6.8e-05 48_[+4]_24 chrII:15251769-15251849 6.8e-05 6_[+4]_66 chrIV:10463271-10463351 6.8e-05 37_[+4]_35 chrI:11491457-11491537 6.8e-05 4_[+4]_68 chrX:13339321-13339401 6.8e-05 57_[+4]_15 chrV:6251329-6251409 6.8e-05 69_[+4]_3 chrIV:12879752-12879832 6.8e-05 11_[+4]_61 chrIII:6850387-6850467 8.6e-05 24_[+4]_48 chrV:11859218-11859298 8.6e-05 51_[+4]_21 chrX:16346633-16346713 0.00013 49_[+4]_23 chrII:8739097-8739177 0.00013 46_[+4]_26 chrII:13665421-13665501 0.00013 11_[+4]_61 chrV:14725503-14725583 0.00013 4_[+4]_68 chrI:10753106-10753186 0.00015 49_[+4]_23 chrX:7291411-7291491 0.00015 27_[+4]_45 chrV:12349592-12349672 0.00015 15_[+4]_57 chrIV:2855499-2855579 0.00018 23_[+4]_49 chrX:10952075-10952155 0.00018 54_[+4]_18 chrII:7406572-7406652 0.00018 20_[+4]_52 chrV:8661688-8661768 0.00021 51_[+4]_21 chrIV:11503774-11503854 0.00021 49_[+4]_23 chrIV:9634068-9634148 0.00021 58_[+4]_14 chrIII:8709926-8710006 0.00025 2_[+4]_70 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif THTTATCA MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF THTTATCA width=8 seqs=32 chrV:418226-418306 ( 21) TCTTATCA 1 chrIII:1002655-1002735 ( 36) TCTTATCA 1 chrI:6389756-6389836 ( 15) TCTTATCA 1 chrV:18701497-18701577 ( 36) TCTTATCA 1 chrII:5323931-5324011 ( 73) TCTTATCA 1 chrV:11941810-11941890 ( 65) TCTTATCA 1 chrII:13004288-13004368 ( 70) TCTTATCA 1 chrII:7277378-7277458 ( 38) TCTTATCA 1 chrX:15761163-15761243 ( 1) TCTTATCA 1 chrX:3117298-3117378 ( 49) TTTTATCA 1 chrII:15251769-15251849 ( 7) TTTTATCA 1 chrIV:10463271-10463351 ( 38) TTTTATCA 1 chrI:11491457-11491537 ( 5) TTTTATCA 1 chrX:13339321-13339401 ( 58) TTTTATCA 1 chrV:6251329-6251409 ( 70) TTTTATCA 1 chrIV:12879752-12879832 ( 12) TTTTATCA 1 chrIII:6850387-6850467 ( 25) TCTCATCA 1 chrV:11859218-11859298 ( 52) TCTCATCA 1 chrX:16346633-16346713 ( 50) TATTATCA 1 chrII:8739097-8739177 ( 47) TATTATCA 1 chrII:13665421-13665501 ( 12) TATTATCA 1 chrV:14725503-14725583 ( 5) TATTATCA 1 chrI:10753106-10753186 ( 50) TTTCATCA 1 chrX:7291411-7291491 ( 28) TTTCATCA 1 chrV:12349592-12349672 ( 16) TTTCATCA 1 chrIV:2855499-2855579 ( 24) TGTTATCA 1 chrX:10952075-10952155 ( 55) TGTTATCA 1 chrII:7406572-7406652 ( 21) TGTTATCA 1 chrV:8661688-8661768 ( 52) TATCATCA 1 chrIV:11503774-11503854 ( 50) TATCATCA 1 chrIV:9634068-9634148 ( 59) TATCATCA 1 chrIII:8709926-8710006 ( 3) TCTTCTCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif THTTATCA MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.4765 E= 2.0e-001 -1164 -1164 -1164 175 -43 90 -115 8 -1164 -1164 -1164 175 -1164 32 -1164 134 172 -268 -1164 -1164 -1164 -1164 -1164 175 -1164 232 -1164 -1164 176 -1164 -1164 -1164 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif THTTATCA MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 32 E= 2.0e-001 0.000000 0.000000 0.000000 1.000000 0.218750 0.375000 0.093750 0.312500 0.000000 0.000000 0.000000 1.000000 0.000000 0.250000 0.000000 0.750000 0.968750 0.031250 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif THTTATCA MEME-4 regular expression -------------------------------------------------------------------------------- T[CTA]T[TC]ATCA -------------------------------------------------------------------------------- Time 18.36 secs. ******************************************************************************** ******************************************************************************** MOTIF CCGCCGCC MEME-5 width = 8 sites = 2 llr = 26 E-value = 6.0e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCGCCGCC MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C aa:aa:aa probability G ::a::a:: matrix T :::::::: bits 2.3 ******** 2.1 ******** 1.9 ******** 1.6 ******** Relative 1.4 ******** Entropy 1.2 ******** (18.4 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CCGCCGCC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGCCGCC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrI:11491457-11491537 69 2.85e-06 TCCTCCGCCA CCGCCGCC AAGT chrI:9313946-9314026 43 2.85e-06 TTGACCGGTT CCGCCGCC TTGCATGAAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGCCGCC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:11491457-11491537 2.9e-06 68_[+5]_4 chrI:9313946-9314026 2.9e-06 42_[+5]_30 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGCCGCC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCGCCGCC width=8 seqs=2 chrI:11491457-11491537 ( 69) CCGCCGCC 1 chrI:9313946-9314026 ( 43) CCGCCGCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGCCGCC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 13.1555 E= 6.0e+003 -765 231 -765 -765 -765 231 -765 -765 -765 -765 226 -765 -765 231 -765 -765 -765 231 -765 -765 -765 -765 226 -765 -765 231 -765 -765 -765 231 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGCCGCC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 6.0e+003 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGCCGCC MEME-5 regular expression -------------------------------------------------------------------------------- CCGCCGCC -------------------------------------------------------------------------------- Time 21.82 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:13243380-13243460 2.52e-01 80 chrV:3197098-3197178 1.34e-04 5_[+2(9.66e-05)]_4_[+1(1.34e-05)]_4_\ [+3(7.34e-05)]_43 chrX:12188441-12188521 1.41e-01 80 chrII:8380337-8380417 3.90e-01 80 chrI:1845042-1845122 1.67e-01 80 chrV:14725503-14725583 1.65e-01 80 chrX:4102365-4102445 6.78e-01 80 chrX:14562761-14562841 2.15e-01 80 chrII:12615568-12615648 7.05e-01 80 chrX:10768928-10769008 2.07e-02 24_[+3(5.59e-05)]_48 chrV:8288582-8288662 4.23e-03 28_[+2(2.01e-05)]_44 chrX:3478157-3478237 2.99e-01 80 chrIII:3529936-3530016 1.13e-01 80 chrI:9108842-9108922 1.31e-02 13_[+3(8.78e-06)]_59 chrII:13470691-13470771 4.95e-02 2_[+3(8.78e-06)]_70 chrV:7543881-7543961 5.75e-02 40_[+1(1.34e-05)]_32 chrIII:6216041-6216121 5.03e-03 16_[+3(8.78e-06)]_56 chrV:11794351-11794431 7.27e-01 80 chrV:12158537-12158617 3.89e-01 80 chrIV:12879752-12879832 2.58e-03 11_[+4(6.78e-05)]_25_[+1(1.34e-05)]_\ 28 chrIII:759844-759924 7.73e-01 80 chrII:13640403-13640483 2.23e-01 23_[+2(7.71e-05)]_49 chrIV:10216268-10216348 1.04e-01 80 chrII:11247813-11247893 3.10e-02 62_[+1(8.20e-05)]_10 chrII:7290109-7290189 8.27e-01 80 chrV:4433573-4433653 4.24e-01 80 chrV:5192659-5192739 2.19e-02 80 chrV:16100293-16100373 1.20e-01 80 chrV:20608966-20609046 1.20e-01 80 chrIV:12921157-12921237 5.38e-01 80 chrX:15316052-15316132 7.03e-02 80 chrII:2805153-2805233 9.93e-01 80 chrV:9327784-9327864 1.24e-01 80 chrX:15761163-15761243 5.54e-02 [+4(2.74e-05)]_72 chrII:13669033-13669113 5.80e-03 22_[+5(2.46e-05)]_50 chrIV:8254362-8254442 6.61e-02 80 chrV:13607022-13607102 2.20e-01 44_[+2(2.01e-05)]_28 chrX:17421921-17422001 3.08e-01 80 chrX:5647113-5647193 1.70e-02 41_[+1(6.31e-05)]_31 chrII:8816702-8816782 1.93e-02 35_[+3(8.78e-06)]_37 chrI:12554395-12554475 7.14e-01 80 chrII:9493400-9493480 1.08e-02 48_[+3(5.59e-05)]_24 chrIV:4212969-4213049 1.02e-02 70_[+1(1.34e-05)]_2 chrII:7406572-7406652 1.60e-01 80 chrX:12186291-12186371 1.42e-01 80 chrX:2893437-2893517 9.08e-01 80 chrII:8854161-8854241 5.04e-02 2_[+2(4.86e-05)]_70 chrIV:2413813-2413893 4.03e-02 80 chrIV:9634068-9634148 4.63e-01 80 chrI:7740023-7740103 3.35e-01 80 chrV:5949756-5949836 9.61e-01 80 chrII:7277378-7277458 7.81e-02 37_[+4(2.74e-05)]_35 chrV:6251329-6251409 2.79e-02 69_[+4(6.78e-05)]_3 chrV:3388518-3388598 5.30e-01 80 chrV:5413025-5413105 7.77e-01 80 chrX:8935166-8935246 7.15e-01 80 chrX:4564962-4565042 6.94e-03 48_[+3(2.99e-05)]_24 chrV:13608425-13608505 3.93e-02 80 chrV:10333976-10334056 6.77e-01 80 chrII:13078974-13079054 7.08e-01 80 chrI:9313946-9314026 1.03e-03 42_[+5(2.85e-06)]_6_[+2(4.86e-05)]_\ 16 chrI:7243861-7243941 2.15e-02 63_[+3(7.34e-05)]_9 chrX:13339321-13339401 1.83e-01 57_[+4(6.78e-05)]_15 chrX:12874074-12874154 1.75e-02 5_[+3(8.78e-06)]_67 chrIV:12890625-12890705 4.46e-01 80 chrIV:633716-633796 3.17e-02 61_[+1(6.31e-05)]_11 chrV:20499817-20499897 8.30e-01 80 chrI:2945760-2945840 9.29e-01 80 chrII:8263724-8263804 2.23e-01 25_[+3(5.59e-05)]_47 chrIV:8261022-8261102 7.30e-01 80 chrV:9085929-9086009 8.51e-01 80 chrIII:10150839-10150919 2.77e-03 24_[+3(1.47e-05)]_31_[+2(7.71e-05)]_\ 9 chrX:8485558-8485638 9.11e-01 80 chrIV:5659091-5659171 1.43e-01 80 chrIII:13066944-13067024 2.40e-02 10_[+3(1.47e-05)]_62 chrV:12533710-12533790 5.08e-02 80 chrIII:6179204-6179284 2.07e-02 51_[+1(6.31e-05)]_21 chrIII:2760879-2760959 9.56e-01 80 chrV:10878323-10878403 5.37e-02 7_[+1(6.31e-05)]_65 chrV:6901321-6901401 9.96e-01 80 chrV:12410764-12410844 2.03e-01 70_[+3(7.34e-05)]_2 chrI:11491457-11491537 7.57e-04 4_[+4(6.78e-05)]_47_[+5(2.46e-05)]_\ 1_[+5(2.85e-06)]_4 chrII:13004288-13004368 3.25e-02 69_[+4(2.74e-05)]_3 chrII:13665421-13665501 3.04e-01 80 chrX:12634000-12634080 6.99e-01 80 chrX:670788-670868 2.03e-01 80 chrX:12844363-12844443 9.48e-01 80 chrIV:6880574-6880654 9.07e-02 80 chrV:9255640-9255720 4.22e-01 80 chrIV:2618761-2618841 7.66e-01 80 chrV:6238549-6238629 2.45e-02 80 chrII:4747173-4747253 2.73e-01 44_[+1(6.31e-05)]_28 chrIV:8043875-8043955 5.41e-01 80 chrV:10776856-10776936 4.05e-03 57_[+3(2.38e-05)]_15 chrII:6176632-6176712 4.91e-01 80 chrI:2761081-2761161 1.12e-01 72_[+2(9.66e-05)] chrV:3312394-3312474 4.09e-02 64_[+2(7.71e-05)]_8 chrII:7238401-7238481 4.15e-02 80 chrX:4664652-4664732 8.14e-02 80 chrII:10529481-10529561 2.70e-01 80 chrIV:10463271-10463351 1.23e-01 37_[+4(6.78e-05)]_35 chrIV:10964862-10964942 1.50e-01 80 chrIII:9930518-9930598 6.77e-01 80 chrX:15380059-15380139 2.33e-01 80 chrII:13680010-13680090 2.83e-01 80 chrIV:5756137-5756217 9.20e-01 80 chrX:6059517-6059597 4.84e-01 80 chrII:9493599-9493679 7.13e-01 80 chrV:10098631-10098711 8.93e-01 80 chrII:5104240-5104320 3.79e-01 80 chrV:5512682-5512762 2.76e-01 80 chrV:16278080-16278160 3.65e-01 80 chrI:9149352-9149432 4.38e-01 80 chrIV:5780542-5780622 5.00e-02 17_[+2(4.86e-05)]_55 chrX:5645781-5645861 1.14e-02 51_[+1(6.31e-05)]_21 chrX:5661283-5661363 1.41e-02 4_[+5(9.27e-05)]_68 chrX:10903582-10903662 7.09e-01 80 chrII:13145365-13145445 4.32e-01 80 chrIV:2149471-2149551 3.46e-03 80 chrII:4874600-4874680 5.24e-01 80 chrV:1456798-1456878 8.17e-01 80 chrI:5375630-5375710 2.46e-01 80 chrIV:3310994-3311074 7.48e-01 80 chrX:6321170-6321250 3.67e-01 80 chrV:7748135-7748215 3.63e-01 80 chrX:6536852-6536932 1.12e-01 80 chrV:10726735-10726815 7.37e-02 80 chrIV:13327195-13327275 4.88e-01 80 chrX:3362554-3362634 8.21e-02 80 chrV:11941810-11941890 1.64e-01 64_[+4(2.74e-05)]_8 chrII:8739097-8739177 3.49e-01 80 chrII:5323931-5324011 2.81e-02 72_[+4(2.74e-05)] chrV:5769663-5769743 4.47e-01 80 chrV:11543750-11543830 1.55e-01 80 chrII:8822861-8822941 5.04e-01 80 chrV:3193230-3193310 1.52e-01 80 chrX:13360784-13360864 5.18e-01 80 chrV:12797029-12797109 3.45e-01 80 chrV:4918865-4918945 4.73e-01 80 chrX:3054710-3054790 3.62e-01 80 chrI:12501365-12501445 7.54e-01 80 chrV:10002872-10002952 6.15e-01 80 chrV:11094843-11094923 5.77e-01 80 chrV:8270033-8270113 2.53e-02 80 chrII:15251769-15251849 8.44e-03 6_[+4(6.78e-05)]_41_[+5(9.27e-05)]_\ 17 chrV:11800722-11800802 1.63e-01 80 chrX:10532366-10532446 1.67e-01 48_[+2(2.01e-05)]_24 chrIV:4478769-4478849 7.93e-01 80 chrV:14830391-14830471 9.32e-02 80 chrV:15354825-15354905 4.37e-03 53_[+3(2.38e-05)]_19 chrX:15704771-15704851 5.96e-02 26_[+1(1.34e-05)]_46 chrIV:11503774-11503854 2.44e-01 80 chrX:6325794-6325874 8.62e-01 80 chrV:10485544-10485624 4.27e-01 80 chrV:6351221-6351301 1.62e-01 80 chrV:7786817-7786897 5.62e-02 80 chrIII:9454861-9454941 9.11e-01 80 chrV:11801592-11801672 1.73e-02 80 chrX:12197507-12197587 1.86e-01 80 chrII:12053282-12053362 1.27e-02 42_[+1(1.34e-05)]_30 chrII:4821986-4822066 2.48e-01 80 chrV:11739927-11740007 1.48e-01 42_[+1(6.31e-05)]_30 chrX:12781859-12781939 6.79e-02 80 chrV:5110829-5110909 7.66e-01 80 chrV:12349592-12349672 3.47e-02 43_[+2(7.71e-05)]_29 chrII:4804892-4804972 4.46e-02 80 chrX:3838803-3838883 1.61e-01 80 chrX:2422303-2422383 5.95e-01 80 chrV:6354284-6354364 4.56e-01 80 chrV:18701497-18701577 5.20e-02 35_[+4(2.74e-05)]_37 chrIV:7233620-7233700 6.65e-01 80 chrV:16213525-16213605 4.23e-01 80 chrV:11859218-11859298 4.46e-03 29_[+1(6.31e-05)]_14_[+4(8.63e-05)]_\ 21 chrX:6025168-6025248 1.29e-01 5_[+1(2.73e-05)]_67 chrII:6701696-6701776 8.86e-01 80 chrII:11056207-11056287 2.77e-01 80 chrIV:11897874-11897954 4.15e-01 80 chrV:6243451-6243531 2.26e-01 80 chrX:11608548-11608628 4.00e-01 80 chrIII:5921483-5921563 8.03e-01 80 chrX:3835827-3835907 4.01e-01 80 chrIV:8532954-8533034 1.07e-01 80 chrX:7291411-7291491 1.93e-01 80 chrIII:8709926-8710006 5.63e-03 80 chrIV:10784240-10784320 5.53e-02 80 chrIII:4412276-4412356 2.34e-01 80 chrX:5628611-5628691 5.50e-01 80 chrIV:3652395-3652475 2.58e-01 80 chrI:6389756-6389836 4.64e-02 14_[+4(2.74e-05)]_58 chrV:9079015-9079095 5.53e-01 80 chrII:8648318-8648398 1.59e-01 80 chrV:20499105-20499185 4.12e-01 80 chrV:11975401-11975481 5.35e-03 59_[+1(8.20e-05)]_13 chrIII:1002655-1002735 1.88e-03 35_[+4(2.74e-05)]_37 chrX:10767682-10767762 9.72e-01 80 chrII:11372122-11372202 1.50e-01 80 chrX:16346633-16346713 1.06e-02 80 chrV:11009157-11009237 4.18e-01 80 chrV:1789634-1789714 8.92e-01 80 chrIV:4300135-4300215 6.94e-02 8_[+2(2.01e-05)]_64 chrIII:6850387-6850467 1.60e-02 24_[+4(8.63e-05)]_48 chrII:2802964-2803044 9.61e-02 44_[+2(7.71e-05)]_28 chrII:14838757-14838837 3.93e-01 80 chrX:5339504-5339584 4.89e-01 80 chrII:7944537-7944617 3.98e-01 80 chrX:3290238-3290318 2.58e-01 80 chrV:12199559-12199639 7.12e-02 80 chrI:10753106-10753186 1.80e-01 80 chrIV:13026849-13026929 1.11e-01 80 chrIV:12842318-12842398 9.05e-01 80 chrI:8864189-8864269 9.28e-01 80 chrV:5813250-5813330 1.31e-01 80 chrI:6416943-6417023 3.77e-01 80 chrIV:8532194-8532274 8.51e-01 80 chrX:10952075-10952155 1.30e-01 80 chrX:15079485-15079565 7.67e-01 80 chrX:3283349-3283429 8.04e-01 80 chrIV:10761500-10761580 2.09e-01 80 chrIV:2855499-2855579 1.51e-03 42_[+1(4.03e-05)]_30 chrII:13166051-13166131 7.38e-01 80 chrIV:12601152-12601232 2.22e-01 34_[+2(9.66e-05)]_38 chrV:3632388-3632468 9.04e-02 80 chrX:7985688-7985768 3.94e-01 80 chrII:5702907-5702987 2.19e-01 80 chrV:13012025-13012105 4.97e-01 80 chrIV:17245357-17245437 6.04e-01 80 chrIII:9661299-9661379 1.53e-01 80 chrIV:8241571-8241651 3.97e-02 80 chrV:418226-418306 6.42e-02 20_[+4(2.74e-05)]_52 chrI:2665919-2665999 2.68e-01 80 chrIII:5472905-5472985 2.25e-01 80 chrV:5816492-5816572 9.53e-01 80 chrII:11841827-11841907 1.76e-02 80 chrX:12172963-12173043 9.99e-01 80 chrX:17424016-17424096 4.60e-01 80 chrX:6530775-6530855 5.89e-01 80 chrIV:13725303-13725383 1.95e-02 28_[+2(7.71e-05)]_44 chrX:3117298-3117378 2.55e-02 48_[+4(6.78e-05)]_24 chrIV:9651331-9651411 2.48e-01 80 chrX:15700376-15700456 9.90e-01 80 chrIII:3104722-3104802 3.09e-01 80 chrI:6556268-6556348 1.33e-02 80 chrX:4883580-4883660 9.42e-01 80 chrV:8661688-8661768 1.84e-03 65_[+2(4.86e-05)]_7 chrII:12961404-12961484 4.62e-01 80 chrV:9218841-9218921 5.58e-01 80 chrII:13468126-13468206 6.56e-02 80 chrV:20871390-20871470 6.39e-01 80 chrII:8818456-8818536 1.20e-01 80 chrIII:7305190-7305270 3.83e-01 80 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n12.farnam.hpc.yale.internal ********************************************************************************