******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/worm/fasta/RankLinear2.0_40/nhr-47.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrIII:482896-482976 1.0000 80 chrV:3870516-3870596 1.0000 80 chrIII:1922669-1922749 1.0000 80 chrV:3874464-3874544 1.0000 80 chrV:20402976-20403056 1.0000 80 chrIII:5500911-5500991 1.0000 80 chrX:12669089-12669169 1.0000 80 chrIV:6514864-6514944 1.0000 80 chrIV:11388862-11388942 1.0000 80 chrV:6630923-6631003 1.0000 80 chrIII:10035934-10036014 1.0000 80 chrII:7977647-7977727 1.0000 80 chrI:11940193-11940273 1.0000 80 chrV:8212127-8212207 1.0000 80 chrX:12200692-12200772 1.0000 80 chrV:10862853-10862933 1.0000 80 chrV:618065-618145 1.0000 80 chrIV:15814228-15814308 1.0000 80 chrIII:11641516-11641596 1.0000 80 chrX:12516558-12516638 1.0000 80 chrV:3856067-3856147 1.0000 80 chrX:2596772-2596852 1.0000 80 chrI:13006440-13006520 1.0000 80 chrIV:2734798-2734878 1.0000 80 chrIII:7115110-7115190 1.0000 80 chrV:396458-396538 1.0000 80 chrIV:16658901-16658981 1.0000 80 chrIII:12615945-12616025 1.0000 80 chrX:15344156-15344236 1.0000 80 chrIV:11760033-11760113 1.0000 80 chrX:2819066-2819146 1.0000 80 chrX:14562426-14562506 1.0000 80 chrI:10754585-10754665 1.0000 80 chrII:9263918-9263998 1.0000 80 chrIV:4613668-4613748 1.0000 80 chrV:4794442-4794522 1.0000 80 chrV:404402-404482 1.0000 80 chrII:9117880-9117960 1.0000 80 chrV:10465617-10465697 1.0000 80 chrIV:9063655-9063735 1.0000 80 chrI:12549948-12550028 1.0000 80 chrIV:4720711-4720791 1.0000 80 chrIII:10903401-10903481 1.0000 80 chrI:13161961-13162041 1.0000 80 chrIII:7090719-7090799 1.0000 80 chrV:9901257-9901337 1.0000 80 chrV:9128759-9128839 1.0000 80 chrI:7374831-7374911 1.0000 80 chrIII:13716379-13716459 1.0000 80 chrV:13253053-13253133 1.0000 80 chrIV:1739072-1739152 1.0000 80 chrV:18710169-18710249 1.0000 80 chrIII:3671157-3671237 1.0000 80 chrI:9601703-9601783 1.0000 80 chrI:4908255-4908335 1.0000 80 chrX:14492602-14492682 1.0000 80 chrV:4063711-4063791 1.0000 80 chrII:1402330-1402410 1.0000 80 chrV:20704165-20704245 1.0000 80 chrV:20493705-20493785 1.0000 80 chrIV:6511940-6512020 1.0000 80 chrV:5204315-5204395 1.0000 80 chrI:9705697-9705777 1.0000 80 chrIV:4184942-4185022 1.0000 80 chrV:5921948-5922028 1.0000 80 chrIV:813519-813599 1.0000 80 chrIV:1056576-1056656 1.0000 80 chrIII:8229658-8229738 1.0000 80 chrII:12506699-12506779 1.0000 80 chrX:5387725-5387805 1.0000 80 chrII:9115808-9115888 1.0000 80 chrII:13016557-13016637 1.0000 80 chrIV:2896158-2896238 1.0000 80 chrIII:8122084-8122164 1.0000 80 chrX:1437235-1437315 1.0000 80 chrX:2464249-2464329 1.0000 80 chrI:10858077-10858157 1.0000 80 chrV:12531203-12531283 1.0000 80 chrIV:14613579-14613659 1.0000 80 chrI:9149336-9149416 1.0000 80 chrX:14478360-14478440 1.0000 80 chrI:7209978-7210058 1.0000 80 chrIV:3519545-3519625 1.0000 80 chrV:19190221-19190301 1.0000 80 chrIV:9053546-9053626 1.0000 80 chrV:5939662-5939742 1.0000 80 chrV:18684659-18684739 1.0000 80 chrII:13083913-13083993 1.0000 80 chrIII:10604459-10604539 1.0000 80 chrX:7446651-7446731 1.0000 80 chrII:12622322-12622402 1.0000 80 chrX:13347421-13347501 1.0000 80 chrX:1439083-1439163 1.0000 80 chrIV:5658417-5658497 1.0000 80 chrIV:10819299-10819379 1.0000 80 chrII:12382759-12382839 1.0000 80 chrIV:14622239-14622319 1.0000 80 chrIV:10890245-10890325 1.0000 80 chrIV:3247083-3247163 1.0000 80 chrV:15182058-15182138 1.0000 80 chrIII:5639989-5640069 1.0000 80 chrV:10867767-10867847 1.0000 80 chrV:1149919-1149999 1.0000 80 chrV:9134116-9134196 1.0000 80 chrV:9474080-9474160 1.0000 80 chrIV:2349078-2349158 1.0000 80 chrIII:3855018-3855098 1.0000 80 chrII:347883-347963 1.0000 80 chrIII:6352598-6352678 1.0000 80 chrIV:10507728-10507808 1.0000 80 chrIII:13718692-13718772 1.0000 80 chrX:980794-980874 1.0000 80 chrII:5327020-5327100 1.0000 80 chrI:6437557-6437637 1.0000 80 chrI:10591695-10591775 1.0000 80 chrIII:4221020-4221100 1.0000 80 chrIII:2805242-2805322 1.0000 80 chrIV:5200979-5201059 1.0000 80 chrI:663654-663734 1.0000 80 chrIV:240444-240524 1.0000 80 chrIV:14837061-14837141 1.0000 80 chrX:2854111-2854191 1.0000 80 chrX:785496-785576 1.0000 80 chrV:1366288-1366368 1.0000 80 chrV:392359-392439 1.0000 80 chrV:13366640-13366720 1.0000 80 chrI:2273924-2274004 1.0000 80 chrX:12914379-12914459 1.0000 80 chrX:910486-910566 1.0000 80 chrX:8963600-8963680 1.0000 80 chrIII:3857215-3857295 1.0000 80 chrIII:6009080-6009160 1.0000 80 chrX:3590618-3590698 1.0000 80 chrX:15983461-15983541 1.0000 80 chrX:16218455-16218535 1.0000 80 chrX:2807512-2807592 1.0000 80 chrII:5959869-5959949 1.0000 80 chrIII:7074143-7074223 1.0000 80 chrX:844830-844910 1.0000 80 chrIV:13430313-13430393 1.0000 80 chrIII:3695542-3695622 1.0000 80 chrV:18712275-18712355 1.0000 80 chrIII:790792-790872 1.0000 80 chrI:13840049-13840129 1.0000 80 chrIII:12152305-12152385 1.0000 80 chrX:12702877-12702957 1.0000 80 chrII:13477370-13477450 1.0000 80 chrIV:9525175-9525255 1.0000 80 chrI:9371921-9372001 1.0000 80 chrX:8566764-8566844 1.0000 80 chrIII:12528181-12528261 1.0000 80 chrI:7370330-7370410 1.0000 80 chrIV:3250165-3250245 1.0000 80 chrIV:1953294-1953374 1.0000 80 chrI:879852-879932 1.0000 80 chrI:10756646-10756726 1.0000 80 chrX:12663644-12663724 1.0000 80 chrIII:10150876-10150956 1.0000 80 chrIII:11935194-11935274 1.0000 80 chrIII:30552-30632 1.0000 80 chrI:15035910-15035990 1.0000 80 chrI:4805455-4805535 1.0000 80 chrX:8090138-8090218 1.0000 80 chrII:5952409-5952489 1.0000 80 chrII:9669127-9669207 1.0000 80 chrIII:12673519-12673599 1.0000 80 chrII:386106-386186 1.0000 80 chrIII:13152797-13152877 1.0000 80 chrII:506189-506269 1.0000 80 chrV:9545426-9545506 1.0000 80 chrIV:1483814-1483894 1.0000 80 chrX:9928153-9928233 1.0000 80 chrII:5334807-5334887 1.0000 80 chrV:13763877-13763957 1.0000 80 chrX:826087-826167 1.0000 80 chrV:11855113-11855193 1.0000 80 chrX:8048810-8048890 1.0000 80 chrII:5329080-5329160 1.0000 80 chrX:8961623-8961703 1.0000 80 chrV:10937458-10937538 1.0000 80 chrIII:13439577-13439657 1.0000 80 chrIII:7839076-7839156 1.0000 80 chrIII:10601020-10601100 1.0000 80 chrX:5298302-5298382 1.0000 80 chrV:6244736-6244816 1.0000 80 chrX:2802929-2803009 1.0000 80 chrII:12679810-12679890 1.0000 80 chrII:2748393-2748473 1.0000 80 chrIV:5561582-5561662 1.0000 80 chrIV:2052469-2052549 1.0000 80 chrV:1488800-1488880 1.0000 80 chrIII:7142256-7142336 1.0000 80 chrI:6441453-6441533 1.0000 80 chrV:13591685-13591765 1.0000 80 chrX:9325118-9325198 1.0000 80 chrX:1964987-1965067 1.0000 80 chrII:6974160-6974240 1.0000 80 chrII:6321166-6321246 1.0000 80 chrIV:11142607-11142687 1.0000 80 chrIII:5499094-5499174 1.0000 80 chrX:17545693-17545773 1.0000 80 chrIV:9725610-9725690 1.0000 80 chrII:7283284-7283364 1.0000 80 chrIV:6156987-6157067 1.0000 80 chrI:3070215-3070295 1.0000 80 chrX:12204531-12204611 1.0000 80 chrII:9010447-9010527 1.0000 80 chrI:2662794-2662874 1.0000 80 chrIII:789793-789873 1.0000 80 chrX:12899265-12899345 1.0000 80 chrIV:10339854-10339934 1.0000 80 chrII:6689241-6689321 1.0000 80 chrX:5164188-5164268 1.0000 80 chrI:13854448-13854528 1.0000 80 chrX:9956724-9956804 1.0000 80 chrV:8662337-8662417 1.0000 80 chrIV:5595722-5595802 1.0000 80 chrV:20455803-20455883 1.0000 80 chrV:13568671-13568751 1.0000 80 chrI:12183232-12183312 1.0000 80 chrI:13688736-13688816 1.0000 80 chrX:1339080-1339160 1.0000 80 chrI:3096316-3096396 1.0000 80 chrV:11733637-11733717 1.0000 80 chrII:8059725-8059805 1.0000 80 chrII:10730843-10730923 1.0000 80 chrIII:8322829-8322909 1.0000 80 chrV:10246585-10246665 1.0000 80 chrX:15860751-15860831 1.0000 80 chrII:9121158-9121238 1.0000 80 chrX:662056-662136 1.0000 80 chrIII:9310008-9310088 1.0000 80 chrIV:9403875-9403955 1.0000 80 chrIII:10628491-10628571 1.0000 80 chrX:8958112-8958192 1.0000 80 chrIV:13574148-13574228 1.0000 80 chrIII:634733-634813 1.0000 80 chrI:5763842-5763922 1.0000 80 chrV:3718689-3718769 1.0000 80 chrIV:5731750-5731830 1.0000 80 chrX:4890346-4890426 1.0000 80 chrIII:491253-491333 1.0000 80 chrV:8170457-8170537 1.0000 80 chrI:323600-323680 1.0000 80 chrIII:29777-29857 1.0000 80 chrIV:3694782-3694862 1.0000 80 chrIV:4360669-4360749 1.0000 80 chrX:2328962-2329042 1.0000 80 chrV:1414751-1414831 1.0000 80 chrIV:1804769-1804849 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/worm/inference_raw/MEME/RankLinear2.0_40_nhr-47/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/worm/fasta/RankLinear2.0_40/nhr-47.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.293 C 0.208 G 0.199 T 0.3 Background letter frequencies (from file dataset with add-one prior applied): A 0.293 C 0.208 G 0.199 T 0.3 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GARAAARA MEME-1 width = 8 sites = 70 llr = 507 E-value = 1.7e-006 ******************************************************************************** -------------------------------------------------------------------------------- Motif GARAAARA MEME-1 Description -------------------------------------------------------------------------------- Simplified A :a499847 pos.-specific C :::1::2: probability G a:6:1143 matrix T :::::1:: bits 2.3 * 2.1 * 1.9 ** 1.6 ** Relative 1.4 ** * Entropy 1.2 ***** * (10.4 bits) 0.9 ****** * 0.7 ****** * 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GAGAAAAA consensus A GG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GARAAARA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrI:879852-879932 67 1.70e-05 GTATGAGCAA GAGAAAGA GCACCT chrI:10858077-10858157 4 1.70e-05 GTC GAGAAAGA CCTTGCCTGC chrV:4063711-4063791 59 1.70e-05 cgtaaaattt gagaaaga tctcgcagcg chrV:3856067-3856147 64 1.70e-05 TTGTACTTCT GAGAAAGA CATAAATCA chrV:3874464-3874544 32 1.70e-05 GTCAAAAAAA GAGAAAGA TTTGTTTTCA chrX:15860751-15860831 49 4.21e-05 TTCACGTCCG GAGAAAAA AGTAGTATCT chrII:6974160-6974240 73 4.21e-05 TATGCTGTTC GAGAAAAA chrIV:1483814-1483894 48 4.21e-05 GCCGCCATTC GAGAAAAA GCAGAATTGA chrIII:10150876-10150956 27 4.21e-05 AGAGGATTTA GAGAAAAA TGACTCGGCT chrV:13366640-13366720 41 4.21e-05 TCACTTCTTT GAGAAAAA AAGTTGATTG chrII:12382759-12382839 15 4.21e-05 GAGAGACGCA GAGAAAAA GAGCACCTAG chrX:7446651-7446731 57 4.21e-05 TGTGATTTCT GAGAAAAA TTTTTTACGA chrIV:813519-813599 32 4.21e-05 AGAGAGCGCA GAGAAAAA GGCGGTCTCT chrI:9601703-9601783 68 4.21e-05 GACGCAGATA GAGAAAAA TGAGC chrI:5763842-5763922 26 9.65e-05 AGAGATTCGA GAGAAACA CGAGACAGCT chrII:6689241-6689321 44 9.65e-05 TGACTAATCG GAAAAAGA GATCACGAGA chrIII:789793-789873 36 9.65e-05 CAATTTCTTA GAAAAAGA TATATGTGTG chrIV:9725610-9725690 42 9.65e-05 CCACTTATCA GAAAAAGA GGCATGAGAC chrII:5334807-5334887 62 9.65e-05 GTTTACAAGC GAGAAACA TGTCATGCGG chrIII:30552-30632 34 9.65e-05 AGGAAAAGAA GAAAAAGA TGAAGACTCC chrX:910486-910566 72 9.65e-05 cgaagatgag gaaaaaga a chrI:11940193-11940273 1 9.65e-05 . GAGAAACA TAGGTAGCTG chrIII:4221020-4221100 4 1.13e-04 ACA GAGAAAAG AGCAAGTGGG chrIV:10507728-10507808 33 1.13e-04 GGGAAAAGTG GAGAAAAG CGGAAATATA chrV:20402976-20403056 24 1.13e-04 GAGAGATTCA GAGAAAAG CGCGCTTGTT chrIV:3694782-3694862 19 1.50e-04 AAAGATTCCC GAAAAAAA AAATCGAATA chrII:6321166-6321246 8 1.50e-04 TTTCAGT GAAAAAAA ACTAAAATGG chrII:13477370-13477450 11 1.50e-04 AAAAAACAGC GAAAAAAA ATTTTTTTCC chrX:12914379-12914459 59 1.50e-04 AACATTTGAA GAAAAAAA ACTAGTCTGG chrV:5204315-5204395 21 1.50e-04 TCAAAATTTT GAAAAAAA AAACTAAATT chrIII:7115110-7115190 44 1.50e-04 AGTTTTCTTG GAAAAAAA TCGTTGATTA chrV:8212127-8212207 49 1.50e-04 AACAAATACA GAAAAAAA CGAATGATAC chrIV:5731750-5731830 64 1.79e-04 CGACACACAT GAAAAAGG AGGGAGTTC chrX:17545693-17545773 58 1.79e-04 CAATAAAAAT GAAAAAGG GTGGTAAGGG chrV:1366288-1366368 33 1.79e-04 AACGAAAAAT GAAAAAGG TGGTGGCTCT chrIII:1922669-1922749 51 1.79e-04 CCTTCAATTT GAAAAAGG AAACGATTTC chrI:13688736-13688816 64 2.17e-04 gagagagtgt gagagaga aatagagaa chrIV:5200979-5201059 53 2.17e-04 AATAATTTAT GAAAAACA TTACGGCCTA chrIV:16658901-16658981 60 2.17e-04 GAGGCACAGA GAGAGAGA GCACTGGATC chrX:8958112-8958192 60 2.42e-04 CAGTTTCCTG GAAAAAAG TTTCTACGTA chrII:9010447-9010527 55 2.42e-04 CTGATTCTAA GAAAAAAG GAGTGACGTG chrII:2748393-2748473 31 2.42e-04 GAGCCAATCT GAAAAAAG AGACGCAGAC chrX:8963600-8963680 52 2.77e-04 TCCTGATACT GAGAATGA TGCCACCACG chrI:9371921-9372001 70 3.40e-04 GAGCATTTGT GAAAAACG TGG chrIV:14622239-14622319 42 3.40e-04 CAGAACCAGT GAGAGAGG GAAAATTCTG chrV:1414751-1414831 58 3.69e-04 GTCATTCCAA GAAAGAGA CTCCTGAGAG chrIV:10890245-10890325 36 3.69e-04 CAAAAAATTA GAGAGACA GGTGATATTC chrI:10756646-10756726 38 3.98e-04 TTAGGGAAAC GAGAAGAA TTTGAATTCA chrII:5959869-5959949 15 3.98e-04 GGAAGAGTGA GAGCAAGA GCGTTCAGGT chrIV:3247083-3247163 70 3.98e-04 AATCGGAAAT GAGCAAGA AAT chrV:404402-404482 60 4.21e-04 AATTGAGAGT GAGAGAAG TTCAAGCCAG chrV:1488800-1488880 18 4.90e-04 GAGATGATTA GAAAATGA CGCAGACTTA chrX:2807512-2807592 65 4.90e-04 GGAATTAAGA GAAAATGA GCACGAGT chrI:2273924-2274004 52 4.90e-04 ATTTTTTTCT GAGAATCA GAAATATCAC chrIII:13718692-13718772 67 4.90e-04 ATTCCAGGAT GAGAATCA TTGTAC chrV:5921948-5922028 25 4.90e-04 AAGATTCTTG GAAAATGA CGATATTCTT chrIII:11641516-11641596 59 4.90e-04 TTTCAGAAAA GAAAATGA GCACAGCTCC chrIII:6009080-6009160 20 5.16e-04 CAGAAATGAC GAGCAAAA CTTTGAACAA chrIV:2734798-2734878 13 5.16e-04 AAAGCGAAGA GAGCAAAA GTGTAAGTGG chrX:12516558-12516638 34 5.16e-04 CGGAGGGCAG GAGCAAAA CAAATTTTTT chrI:6437557-6437637 28 5.62e-04 GAATTATTCC GAGAAGCA GCTAAATGAT chrII:5327020-5327100 29 5.62e-04 TCACACTTCC GAGAAGCA AATCCTAATC chrX:1964987-1965067 68 6.20e-04 TTTTGCAATT GAGAGACG CAGAC chrX:8048810-8048890 8 6.20e-04 ATCGGTT GAAAATAA TTGTATCGCG chrIII:13152797-13152877 56 6.20e-04 ATGCGAAATC GAGAGACG CAGAGAAGCC chrIV:3519545-3519625 14 6.20e-04 ACAAGAAATG GAGAGACG CCGACAGACC chrIV:15814228-15814308 1 6.20e-04 . GAAAATAA AAAAGAATTC chrI:3070215-3070295 18 6.57e-04 TAGCTTGTCC GAGAAGAG TACACAGTGG chrIV:11760033-11760113 36 7.60e-04 GGAGAAACTG GAAAATGG CTCATTTTCA chrI:12183232-12183312 68 9.08e-04 GGAAAGCAAA GAGAGGGA ATTTA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GARAAARA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:879852-879932 1.7e-05 66_[+1]_6 chrI:10858077-10858157 1.7e-05 3_[+1]_69 chrV:4063711-4063791 1.7e-05 58_[+1]_14 chrV:3856067-3856147 1.7e-05 63_[+1]_9 chrV:3874464-3874544 1.7e-05 31_[+1]_41 chrX:15860751-15860831 4.2e-05 48_[+1]_24 chrII:6974160-6974240 4.2e-05 72_[+1] chrIV:1483814-1483894 4.2e-05 47_[+1]_25 chrIII:10150876-10150956 4.2e-05 26_[+1]_46 chrV:13366640-13366720 4.2e-05 40_[+1]_32 chrII:12382759-12382839 4.2e-05 14_[+1]_58 chrX:7446651-7446731 4.2e-05 56_[+1]_16 chrIV:813519-813599 4.2e-05 31_[+1]_41 chrI:9601703-9601783 4.2e-05 67_[+1]_5 chrI:5763842-5763922 9.6e-05 25_[+1]_47 chrII:6689241-6689321 9.6e-05 43_[+1]_29 chrIII:789793-789873 9.6e-05 35_[+1]_37 chrIV:9725610-9725690 9.6e-05 41_[+1]_31 chrII:5334807-5334887 9.6e-05 61_[+1]_11 chrIII:30552-30632 9.6e-05 33_[+1]_39 chrX:910486-910566 9.6e-05 71_[+1]_1 chrI:11940193-11940273 9.6e-05 [+1]_72 chrIII:4221020-4221100 0.00011 3_[+1]_69 chrIV:10507728-10507808 0.00011 32_[+1]_40 chrV:20402976-20403056 0.00011 23_[+1]_49 chrIV:3694782-3694862 0.00015 18_[+1]_54 chrII:6321166-6321246 0.00015 7_[+1]_65 chrII:13477370-13477450 0.00015 10_[+1]_62 chrX:12914379-12914459 0.00015 58_[+1]_14 chrV:5204315-5204395 0.00015 20_[+1]_52 chrIII:7115110-7115190 0.00015 43_[+1]_29 chrV:8212127-8212207 0.00015 48_[+1]_24 chrIV:5731750-5731830 0.00018 63_[+1]_9 chrX:17545693-17545773 0.00018 57_[+1]_15 chrV:1366288-1366368 0.00018 32_[+1]_40 chrIII:1922669-1922749 0.00018 50_[+1]_22 chrI:13688736-13688816 0.00022 63_[+1]_9 chrIV:5200979-5201059 0.00022 52_[+1]_20 chrIV:16658901-16658981 0.00022 59_[+1]_13 chrX:8958112-8958192 0.00024 59_[+1]_13 chrII:9010447-9010527 0.00024 54_[+1]_18 chrII:2748393-2748473 0.00024 30_[+1]_42 chrX:8963600-8963680 0.00028 51_[+1]_21 chrI:9371921-9372001 0.00034 69_[+1]_3 chrIV:14622239-14622319 0.00034 41_[+1]_31 chrV:1414751-1414831 0.00037 57_[+1]_15 chrIV:10890245-10890325 0.00037 35_[+1]_37 chrI:10756646-10756726 0.0004 37_[+1]_35 chrII:5959869-5959949 0.0004 14_[+1]_58 chrIV:3247083-3247163 0.0004 69_[+1]_3 chrV:404402-404482 0.00042 59_[+1]_13 chrV:1488800-1488880 0.00049 17_[+1]_55 chrX:2807512-2807592 0.00049 64_[+1]_8 chrI:2273924-2274004 0.00049 51_[+1]_21 chrIII:13718692-13718772 0.00049 66_[+1]_6 chrV:5921948-5922028 0.00049 24_[+1]_48 chrIII:11641516-11641596 0.00049 58_[+1]_14 chrIII:6009080-6009160 0.00052 19_[+1]_53 chrIV:2734798-2734878 0.00052 12_[+1]_60 chrX:12516558-12516638 0.00052 33_[+1]_39 chrI:6437557-6437637 0.00056 27_[+1]_45 chrII:5327020-5327100 0.00056 28_[+1]_44 chrX:1964987-1965067 0.00062 67_[+1]_5 chrX:8048810-8048890 0.00062 7_[+1]_65 chrIII:13152797-13152877 0.00062 55_[+1]_17 chrIV:3519545-3519625 0.00062 13_[+1]_59 chrIV:15814228-15814308 0.00062 [+1]_72 chrI:3070215-3070295 0.00066 17_[+1]_55 chrIV:11760033-11760113 0.00076 35_[+1]_37 chrI:12183232-12183312 0.00091 67_[+1]_5 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GARAAARA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GARAAARA width=8 seqs=70 chrI:879852-879932 ( 67) GAGAAAGA 1 chrI:10858077-10858157 ( 4) GAGAAAGA 1 chrV:4063711-4063791 ( 59) GAGAAAGA 1 chrV:3856067-3856147 ( 64) GAGAAAGA 1 chrV:3874464-3874544 ( 32) GAGAAAGA 1 chrX:15860751-15860831 ( 49) GAGAAAAA 1 chrII:6974160-6974240 ( 73) GAGAAAAA 1 chrIV:1483814-1483894 ( 48) GAGAAAAA 1 chrIII:10150876-10150956 ( 27) GAGAAAAA 1 chrV:13366640-13366720 ( 41) GAGAAAAA 1 chrII:12382759-12382839 ( 15) GAGAAAAA 1 chrX:7446651-7446731 ( 57) GAGAAAAA 1 chrIV:813519-813599 ( 32) GAGAAAAA 1 chrI:9601703-9601783 ( 68) GAGAAAAA 1 chrI:5763842-5763922 ( 26) GAGAAACA 1 chrII:6689241-6689321 ( 44) GAAAAAGA 1 chrIII:789793-789873 ( 36) GAAAAAGA 1 chrIV:9725610-9725690 ( 42) GAAAAAGA 1 chrII:5334807-5334887 ( 62) GAGAAACA 1 chrIII:30552-30632 ( 34) GAAAAAGA 1 chrX:910486-910566 ( 72) GAAAAAGA 1 chrI:11940193-11940273 ( 1) GAGAAACA 1 chrIII:4221020-4221100 ( 4) GAGAAAAG 1 chrIV:10507728-10507808 ( 33) GAGAAAAG 1 chrV:20402976-20403056 ( 24) GAGAAAAG 1 chrIV:3694782-3694862 ( 19) GAAAAAAA 1 chrII:6321166-6321246 ( 8) GAAAAAAA 1 chrII:13477370-13477450 ( 11) GAAAAAAA 1 chrX:12914379-12914459 ( 59) GAAAAAAA 1 chrV:5204315-5204395 ( 21) GAAAAAAA 1 chrIII:7115110-7115190 ( 44) GAAAAAAA 1 chrV:8212127-8212207 ( 49) GAAAAAAA 1 chrIV:5731750-5731830 ( 64) GAAAAAGG 1 chrX:17545693-17545773 ( 58) GAAAAAGG 1 chrV:1366288-1366368 ( 33) GAAAAAGG 1 chrIII:1922669-1922749 ( 51) GAAAAAGG 1 chrI:13688736-13688816 ( 64) GAGAGAGA 1 chrIV:5200979-5201059 ( 53) GAAAAACA 1 chrIV:16658901-16658981 ( 60) GAGAGAGA 1 chrX:8958112-8958192 ( 60) GAAAAAAG 1 chrII:9010447-9010527 ( 55) GAAAAAAG 1 chrII:2748393-2748473 ( 31) GAAAAAAG 1 chrX:8963600-8963680 ( 52) GAGAATGA 1 chrI:9371921-9372001 ( 70) GAAAAACG 1 chrIV:14622239-14622319 ( 42) GAGAGAGG 1 chrV:1414751-1414831 ( 58) GAAAGAGA 1 chrIV:10890245-10890325 ( 36) GAGAGACA 1 chrI:10756646-10756726 ( 38) GAGAAGAA 1 chrII:5959869-5959949 ( 15) GAGCAAGA 1 chrIV:3247083-3247163 ( 70) GAGCAAGA 1 chrV:404402-404482 ( 60) GAGAGAAG 1 chrV:1488800-1488880 ( 18) GAAAATGA 1 chrX:2807512-2807592 ( 65) GAAAATGA 1 chrI:2273924-2274004 ( 52) GAGAATCA 1 chrIII:13718692-13718772 ( 67) GAGAATCA 1 chrV:5921948-5922028 ( 25) GAAAATGA 1 chrIII:11641516-11641596 ( 59) GAAAATGA 1 chrIII:6009080-6009160 ( 20) GAGCAAAA 1 chrIV:2734798-2734878 ( 13) GAGCAAAA 1 chrX:12516558-12516638 ( 34) GAGCAAAA 1 chrI:6437557-6437637 ( 28) GAGAAGCA 1 chrII:5327020-5327100 ( 29) GAGAAGCA 1 chrX:1964987-1965067 ( 68) GAGAGACG 1 chrX:8048810-8048890 ( 8) GAAAATAA 1 chrIII:13152797-13152877 ( 56) GAGAGACG 1 chrIV:3519545-3519625 ( 14) GAGAGACG 1 chrIV:15814228-15814308 ( 1) GAAAATAA 1 chrI:3070215-3070295 ( 18) GAGAAGAG 1 chrIV:11760033-11760113 ( 36) GAAAATGG 1 chrI:12183232-12183312 ( 68) GAGAGGGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GARAAARA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.84505 E= 1.7e-006 -1277 -1277 233 -1277 177 -1277 -1277 -1277 50 -1277 156 -1277 166 -154 -1277 -1277 155 -1277 -48 -1277 142 -1277 -148 -107 55 -16 95 -1277 134 -1277 37 -1277 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GARAAARA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 70 E= 1.7e-006 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.414286 0.000000 0.585714 0.000000 0.928571 0.071429 0.000000 0.000000 0.857143 0.000000 0.142857 0.000000 0.785714 0.000000 0.071429 0.142857 0.428571 0.185714 0.385714 0.000000 0.742857 0.000000 0.257143 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GARAAARA MEME-1 regular expression -------------------------------------------------------------------------------- GA[GA]AAA[AG][AG] -------------------------------------------------------------------------------- Time 5.08 secs. ******************************************************************************** ******************************************************************************** MOTIF AARYGCGC MEME-2 width = 8 sites = 40 llr = 330 E-value = 7.1e-006 ******************************************************************************** -------------------------------------------------------------------------------- Motif AARYGCGC MEME-2 Description -------------------------------------------------------------------------------- Simplified A 7751:::: pos.-specific C 2316:a:a probability G 2:3:a:a: matrix T ::14:::: bits 2.3 **** 2.1 **** 1.9 **** 1.6 **** Relative 1.4 **** Entropy 1.2 **** (11.9 bits) 0.9 * **** 0.7 ** ***** 0.5 ** ***** 0.2 ******** 0.0 -------- Multilevel AAACGCGC consensus GCGT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AARYGCGC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIV:3694782-3694862 51 6.09e-06 GTAAAAATGC AAGCGCGC TCTACCGCAC chrIII:634733-634813 14 1.51e-05 TCTGCACCAG AAACGCGC AAAGCTTCTC chrII:6321166-6321246 34 1.51e-05 GGGAGTAAGC AAACGCGC TCTGTCGAGA chrIV:2349078-2349158 17 1.51e-05 GCACGTCAAG AAACGCGC CAGCAGACTT chrIV:4184942-4185022 57 1.51e-05 CTCGACGAGT AAACGCGC TCCATTGAAC chrII:1402330-1402410 27 1.51e-05 CACTAACGCA AAACGCGC CAGCAGCCAC chrI:3070215-3070295 45 2.57e-05 GCACTAAACA ACACGCGC ATGCGGAATT chrX:9325118-9325198 9 2.57e-05 GGCAACAT ACACGCGC ATGTCCTTAG chrIII:11935194-11935274 73 2.57e-05 gtgtgCGAGC ACACGCGC chrI:10591695-10591775 29 2.57e-05 CGAGAGGAGT ACACGCGC GAGTGCACTG chrIII:29777-29857 31 2.99e-05 CTCGTCCCCC GAGCGCGC AGAGTTCTTG chrIII:491253-491333 54 2.99e-05 CGTGCcggtg gagcgcgc ttgcattttt chrV:11733637-11733717 49 2.99e-05 ATTGTCATTG GAGCGCGC TTTCCCCAAC chrI:3096316-3096396 7 4.47e-05 CGAAAC AAGTGCGC TCTACGGCAC chrIV:4360669-4360749 19 5.77e-05 AAGGCACGAG AAATGCGC CAGCACACTA chrII:5952409-5952489 4 5.77e-05 AAG AAATGCGC GAGTTCCGGT chrIII:3695542-3695622 66 5.77e-05 CCACCACGAG AAATGCGC AGAGAGA chrIV:813519-813599 12 5.77e-05 CCACCACGAG AAATGCGC AGAGAGAGCG chrII:12679810-12679890 23 6.49e-05 GGAATCCCGC CAGCGCGC CTTCTTTACC chrIV:2896158-2896238 62 6.49e-05 gcgtactaca cagcgcgc attttaattg chrI:12549948-12550028 30 6.49e-05 TGTTTTTCAT GCGCGCGC AGACTGAGAG chrX:5298302-5298382 44 8.82e-05 ATGAGCTAGT AACCGCGC GTTGACGTCA chrIII:7074143-7074223 14 8.82e-05 AGAGTAGTGC AACCGCGC TTTATTGAGA chrIII:8122084-8122164 47 8.82e-05 ATTAATGGAA ACGTGCGC TCATATTTTT chrX:2854111-2854191 18 1.07e-04 GTTCGTGACA AATCGCGC AAACATATCC chrV:1149919-1149999 33 1.10e-04 ctgcgccccg ccgcgcgc actgctttct chrIII:10628491-10628571 44 1.25e-04 AGTGAGAAGA GAGTGCGC GAGGGGAAGA chrIII:2805242-2805322 28 1.25e-04 AATTTGAAAC ACCCGCGC ATTAATTTTC chrIII:11641516-11641596 24 1.25e-04 AAAATGCGGT GAGTGCGC ATTCTATCGT chrIV:13430313-13430393 13 1.55e-04 CTCTTACTCT GCGTGCGC GCCTCTCCAC chrII:6974160-6974240 49 1.86e-04 ACTTGACGAG CAATGCGC GTCAAATATG chrII:386106-386186 44 1.99e-04 TCAAGTCCGC AATTGCGC GTCAGGTGTT chrX:2464249-2464329 42 1.99e-04 AATTGCCACC AATTGCGC CGCAGGGCAA chrX:1437235-1437315 56 1.99e-04 TCTAAATGGA AATTGCGC AGGGAGGCTG chrV:9545426-9545506 70 2.32e-04 TGGCGAGTAT AAAAGCGC TTC chrII:506189-506269 2 2.32e-04 A AAAAGCGC AAGGGAAGAC chrII:9117880-9117960 72 2.56e-04 CAATGTGATG CCATGCGC A chrIII:10035934-10036014 44 2.56e-04 AGAATCTCGT GCTCGCGC TGCTCGGGCA chrIV:1804769-1804849 53 2.84e-04 CGACAGAACA CCCCGCGC GATGTTTATC chrII:13083913-13083993 1 2.84e-04 . ACAAGCGC CAAAAAGTGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AARYGCGC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:3694782-3694862 6.1e-06 50_[+2]_22 chrIII:634733-634813 1.5e-05 13_[+2]_59 chrII:6321166-6321246 1.5e-05 33_[+2]_39 chrIV:2349078-2349158 1.5e-05 16_[+2]_56 chrIV:4184942-4185022 1.5e-05 56_[+2]_16 chrII:1402330-1402410 1.5e-05 26_[+2]_46 chrI:3070215-3070295 2.6e-05 44_[+2]_28 chrX:9325118-9325198 2.6e-05 8_[+2]_64 chrIII:11935194-11935274 2.6e-05 72_[+2] chrI:10591695-10591775 2.6e-05 28_[+2]_44 chrIII:29777-29857 3e-05 30_[+2]_42 chrIII:491253-491333 3e-05 53_[+2]_19 chrV:11733637-11733717 3e-05 48_[+2]_24 chrI:3096316-3096396 4.5e-05 6_[+2]_66 chrIV:4360669-4360749 5.8e-05 18_[+2]_54 chrII:5952409-5952489 5.8e-05 3_[+2]_69 chrIII:3695542-3695622 5.8e-05 65_[+2]_7 chrIV:813519-813599 5.8e-05 11_[+2]_61 chrII:12679810-12679890 6.5e-05 22_[+2]_50 chrIV:2896158-2896238 6.5e-05 61_[+2]_11 chrI:12549948-12550028 6.5e-05 29_[+2]_43 chrX:5298302-5298382 8.8e-05 43_[+2]_29 chrIII:7074143-7074223 8.8e-05 13_[+2]_59 chrIII:8122084-8122164 8.8e-05 46_[+2]_26 chrX:2854111-2854191 0.00011 17_[+2]_55 chrV:1149919-1149999 0.00011 32_[+2]_40 chrIII:10628491-10628571 0.00012 43_[+2]_29 chrIII:2805242-2805322 0.00012 27_[+2]_45 chrIII:11641516-11641596 0.00012 23_[+2]_49 chrIV:13430313-13430393 0.00015 12_[+2]_60 chrII:6974160-6974240 0.00019 48_[+2]_24 chrII:386106-386186 0.0002 43_[+2]_29 chrX:2464249-2464329 0.0002 41_[+2]_31 chrX:1437235-1437315 0.0002 55_[+2]_17 chrV:9545426-9545506 0.00023 69_[+2]_3 chrII:506189-506269 0.00023 1_[+2]_71 chrII:9117880-9117960 0.00026 71_[+2]_1 chrIII:10035934-10036014 0.00026 43_[+2]_29 chrIV:1804769-1804849 0.00028 52_[+2]_20 chrII:13083913-13083993 0.00028 [+2]_72 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AARYGCGC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AARYGCGC width=8 seqs=40 chrIV:3694782-3694862 ( 51) AAGCGCGC 1 chrIII:634733-634813 ( 14) AAACGCGC 1 chrII:6321166-6321246 ( 34) AAACGCGC 1 chrIV:2349078-2349158 ( 17) AAACGCGC 1 chrIV:4184942-4185022 ( 57) AAACGCGC 1 chrII:1402330-1402410 ( 27) AAACGCGC 1 chrI:3070215-3070295 ( 45) ACACGCGC 1 chrX:9325118-9325198 ( 9) ACACGCGC 1 chrIII:11935194-11935274 ( 73) ACACGCGC 1 chrI:10591695-10591775 ( 29) ACACGCGC 1 chrIII:29777-29857 ( 31) GAGCGCGC 1 chrIII:491253-491333 ( 54) GAGCGCGC 1 chrV:11733637-11733717 ( 49) GAGCGCGC 1 chrI:3096316-3096396 ( 7) AAGTGCGC 1 chrIV:4360669-4360749 ( 19) AAATGCGC 1 chrII:5952409-5952489 ( 4) AAATGCGC 1 chrIII:3695542-3695622 ( 66) AAATGCGC 1 chrIV:813519-813599 ( 12) AAATGCGC 1 chrII:12679810-12679890 ( 23) CAGCGCGC 1 chrIV:2896158-2896238 ( 62) CAGCGCGC 1 chrI:12549948-12550028 ( 30) GCGCGCGC 1 chrX:5298302-5298382 ( 44) AACCGCGC 1 chrIII:7074143-7074223 ( 14) AACCGCGC 1 chrIII:8122084-8122164 ( 47) ACGTGCGC 1 chrX:2854111-2854191 ( 18) AATCGCGC 1 chrV:1149919-1149999 ( 33) CCGCGCGC 1 chrIII:10628491-10628571 ( 44) GAGTGCGC 1 chrIII:2805242-2805322 ( 28) ACCCGCGC 1 chrIII:11641516-11641596 ( 24) GAGTGCGC 1 chrIV:13430313-13430393 ( 13) GCGTGCGC 1 chrII:6974160-6974240 ( 49) CAATGCGC 1 chrII:386106-386186 ( 44) AATTGCGC 1 chrX:2464249-2464329 ( 42) AATTGCGC 1 chrX:1437235-1437315 ( 56) AATTGCGC 1 chrV:9545426-9545506 ( 70) AAAAGCGC 1 chrII:506189-506269 ( 2) AAAAGCGC 1 chrII:9117880-9117960 ( 72) CCATGCGC 1 chrIII:10035934-10036014 ( 44) GCTCGCGC 1 chrIV:1804769-1804849 ( 53) CCCCGCGC 1 chrII:13083913-13083993 ( 1) ACAAGCGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AARYGCGC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.77545 E= 7.1e-006 115 -47 1 -1197 120 65 -1197 -1197 62 -105 71 -126 -196 147 -1197 22 -1197 -1197 233 -1197 -1197 227 -1197 -1197 -1197 -1197 233 -1197 -1197 227 -1197 -1197 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AARYGCGC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 40 E= 7.1e-006 0.650000 0.150000 0.200000 0.000000 0.675000 0.325000 0.000000 0.000000 0.450000 0.100000 0.325000 0.125000 0.075000 0.575000 0.000000 0.350000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AARYGCGC MEME-2 regular expression -------------------------------------------------------------------------------- [AG][AC][AG][CT]GCGC -------------------------------------------------------------------------------- Time 9.99 secs. ******************************************************************************** ******************************************************************************** MOTIF TCHWRGAA MEME-3 width = 8 sites = 38 llr = 306 E-value = 1.3e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif TCHWRGAA MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::246:aa pos.-specific C :a42:::: probability G ::::4a:: matrix T a:44:::: bits 2.3 * * 2.1 * * 1.9 * *** 1.6 ** *** Relative 1.4 ** *** Entropy 1.2 ** *** (11.6 bits) 0.9 ** **** 0.7 ** **** 0.5 *** **** 0.2 ******** 0.0 -------- Multilevel TCTTAGAA consensus CAG sequence A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCHWRGAA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrII:10730843-10730923 43 3.85e-05 CTGATTTTGT TCCAAGAA ACTGAAAAAT chrV:10937458-10937538 33 3.85e-05 ATGATTCAAT TCCTAGAA AATGTTCATT chrIV:9053546-9053626 24 3.85e-05 CCTTTCGTAT TCCAAGAA ACGCCACCTG chrII:9115808-9115888 29 3.85e-05 TCAGCGTAGT TCCAAGAA CATCGTTAAC chrIV:6511940-6512020 28 3.85e-05 CCAAAATTAT TCCAAGAA AACCAGAAAC chrV:8212127-8212207 32 3.85e-05 TTTTCCCAGT TCCAAGAA ACAAATACAG chrIII:5500911-5500991 15 3.85e-05 GTAGAAAATT TCCAAGAA TTTATGGGAT chrIII:7839076-7839156 48 6.47e-05 TTTCAACATT TCCTGGAA ACACTGATCT chrIV:3250165-3250245 59 6.47e-05 AAATAATTGT TCCAGGAA CTCCGACTGA chrX:2854111-2854191 55 6.47e-05 TCTCTTGTGT TCCTGGAA TCAATATAAT chrIII:6352598-6352678 7 6.47e-05 CTCCTC TCCTGGAA CCTCTGAATG chrX:13347421-13347501 17 6.47e-05 AGGATTCGAT TCCAGGAA CTAGACATGT chrIII:8122084-8122164 23 6.47e-05 CACGGACACT TCCAGGAA GTTTGGATTA chrIV:1739072-1739152 56 6.47e-05 GGCGAGCGAT TCCTGGAA TTCGTTCGTG chrV:6244736-6244816 55 1.20e-04 TCTCTCAATT TCTAAGAA CCTCAAAAAA chrII:5329080-5329160 32 1.20e-04 TCGATAAAGA TCTTAGAA ACTATAATCA chrII:5334807-5334887 3 1.20e-04 TT TCTTAGAA TTTCTGATAG chrII:5959869-5959949 39 1.20e-04 AGGTGTTATT TCTAAGAA ATTGAAAATC chrX:2464249-2464329 24 1.20e-04 CTCTGAAAAC TCTAAGAA AATTGCCACC chrIII:13716379-13716459 64 1.20e-04 ATTCTGGAAT TCTTAGAA TTTTCTCAG chrI:10756646-10756726 73 1.58e-04 CATCTCTTTT TCTTGGAA chrI:4908255-4908335 63 1.58e-04 AACGAGTGTT TCTTGGAA TCCCAAAAAT chrX:12516558-12516638 60 1.58e-04 TTCTAGTATT TCTTGGAA ATAATTGTTG chrI:11940193-11940273 59 1.58e-04 ATCTACAATT TCTTGGAA TCATAATAAA chrX:12669089-12669169 21 1.58e-04 TCCTGTGATT TCTTGGAA ACCCTCAAAC chrIII:482896-482976 37 1.58e-04 TTCATGATAT TCTTGGAA ATTGGAAATT chrX:5164188-5164268 15 2.54e-04 GGTGTAAAGT TCAAAGAA AGTCACCTTT chrII:7283284-7283364 31 2.54e-04 ATAATTCCAA TCATAGAA TCCTCATGTG chrI:7209978-7210058 64 2.54e-04 AAATTCATAT TCTCAGAA AACTTTGCA chrV:9901257-9901337 2 2.54e-04 T TCTCAGAA AGTTATAATG chrX:15344156-15344236 17 2.54e-04 ACATGACTTT TCTCAGAA TTCGGGAAGA chrIV:15814228-15814308 17 2.54e-04 AAAAAAGAAT TCATAGAA ATTTCTGATG chrV:3870516-3870596 36 2.54e-04 TGACTAATTT TCAAAGAA TTAACCTTGT chrV:618065-618145 9 3.05e-04 TCCGTTTT TCAAGGAA CTACTTCCAC chrX:12899265-12899345 57 3.24e-04 CCGCGCGACA TCACAGAA CACTCATCGT chrX:9928153-9928233 24 3.24e-04 ATCACGTGCG TCACAGAA CACTGCCTAG chrIV:1483814-1483894 11 3.24e-04 TAGCTCTTTT TCACAGAA CTCACCGCTC chrV:15182058-15182138 43 3.24e-04 AAACGATTTT TCACAGAA TTCCAGGCAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCHWRGAA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:10730843-10730923 3.9e-05 42_[+3]_30 chrV:10937458-10937538 3.9e-05 32_[+3]_40 chrIV:9053546-9053626 3.9e-05 23_[+3]_49 chrII:9115808-9115888 3.9e-05 28_[+3]_44 chrIV:6511940-6512020 3.9e-05 27_[+3]_45 chrV:8212127-8212207 3.9e-05 31_[+3]_41 chrIII:5500911-5500991 3.9e-05 14_[+3]_58 chrIII:7839076-7839156 6.5e-05 47_[+3]_25 chrIV:3250165-3250245 6.5e-05 58_[+3]_14 chrX:2854111-2854191 6.5e-05 54_[+3]_18 chrIII:6352598-6352678 6.5e-05 6_[+3]_66 chrX:13347421-13347501 6.5e-05 16_[+3]_56 chrIII:8122084-8122164 6.5e-05 22_[+3]_50 chrIV:1739072-1739152 6.5e-05 55_[+3]_17 chrV:6244736-6244816 0.00012 54_[+3]_18 chrII:5329080-5329160 0.00012 31_[+3]_41 chrII:5334807-5334887 0.00012 2_[+3]_70 chrII:5959869-5959949 0.00012 38_[+3]_34 chrX:2464249-2464329 0.00012 23_[+3]_49 chrIII:13716379-13716459 0.00012 63_[+3]_9 chrI:10756646-10756726 0.00016 72_[+3] chrI:4908255-4908335 0.00016 62_[+3]_10 chrX:12516558-12516638 0.00016 59_[+3]_13 chrI:11940193-11940273 0.00016 58_[+3]_14 chrX:12669089-12669169 0.00016 20_[+3]_52 chrIII:482896-482976 0.00016 36_[+3]_36 chrX:5164188-5164268 0.00025 14_[+3]_58 chrII:7283284-7283364 0.00025 30_[+3]_42 chrI:7209978-7210058 0.00025 63_[+3]_9 chrV:9901257-9901337 0.00025 1_[+3]_71 chrX:15344156-15344236 0.00025 16_[+3]_56 chrIV:15814228-15814308 0.00025 16_[+3]_56 chrV:3870516-3870596 0.00025 35_[+3]_37 chrV:618065-618145 0.0003 8_[+3]_64 chrX:12899265-12899345 0.00032 56_[+3]_16 chrX:9928153-9928233 0.00032 23_[+3]_49 chrIV:1483814-1483894 0.00032 10_[+3]_62 chrV:15182058-15182138 0.00032 42_[+3]_30 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCHWRGAA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TCHWRGAA width=8 seqs=38 chrII:10730843-10730923 ( 43) TCCAAGAA 1 chrV:10937458-10937538 ( 33) TCCTAGAA 1 chrIV:9053546-9053626 ( 24) TCCAAGAA 1 chrII:9115808-9115888 ( 29) TCCAAGAA 1 chrIV:6511940-6512020 ( 28) TCCAAGAA 1 chrV:8212127-8212207 ( 32) TCCAAGAA 1 chrIII:5500911-5500991 ( 15) TCCAAGAA 1 chrIII:7839076-7839156 ( 48) TCCTGGAA 1 chrIV:3250165-3250245 ( 59) TCCAGGAA 1 chrX:2854111-2854191 ( 55) TCCTGGAA 1 chrIII:6352598-6352678 ( 7) TCCTGGAA 1 chrX:13347421-13347501 ( 17) TCCAGGAA 1 chrIII:8122084-8122164 ( 23) TCCAGGAA 1 chrIV:1739072-1739152 ( 56) TCCTGGAA 1 chrV:6244736-6244816 ( 55) TCTAAGAA 1 chrII:5329080-5329160 ( 32) TCTTAGAA 1 chrII:5334807-5334887 ( 3) TCTTAGAA 1 chrII:5959869-5959949 ( 39) TCTAAGAA 1 chrX:2464249-2464329 ( 24) TCTAAGAA 1 chrIII:13716379-13716459 ( 64) TCTTAGAA 1 chrI:10756646-10756726 ( 73) TCTTGGAA 1 chrI:4908255-4908335 ( 63) TCTTGGAA 1 chrX:12516558-12516638 ( 60) TCTTGGAA 1 chrI:11940193-11940273 ( 59) TCTTGGAA 1 chrX:12669089-12669169 ( 21) TCTTGGAA 1 chrIII:482896-482976 ( 37) TCTTGGAA 1 chrX:5164188-5164268 ( 15) TCAAAGAA 1 chrII:7283284-7283364 ( 31) TCATAGAA 1 chrI:7209978-7210058 ( 64) TCTCAGAA 1 chrV:9901257-9901337 ( 2) TCTCAGAA 1 chrX:15344156-15344236 ( 17) TCTCAGAA 1 chrIV:15814228-15814308 ( 17) TCATAGAA 1 chrV:3870516-3870596 ( 36) TCAAAGAA 1 chrV:618065-618145 ( 9) TCAAGGAA 1 chrX:12899265-12899345 ( 57) TCACAGAA 1 chrX:9928153-9928233 ( 24) TCACAGAA 1 chrIV:1483814-1483894 ( 11) TCACAGAA 1 chrV:15182058-15182138 ( 43) TCACAGAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCHWRGAA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.09987 E= 1.3e+000 -1189 -1189 -1189 173 -1189 227 -1189 -1189 -31 83 -1189 39 43 -17 -1189 49 111 -1189 89 -1189 -1189 -1189 233 -1189 177 -1189 -1189 -1189 177 -1189 -1189 -1189 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCHWRGAA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 38 E= 1.3e+000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.236842 0.368421 0.000000 0.394737 0.394737 0.184211 0.000000 0.421053 0.631579 0.000000 0.368421 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCHWRGAA MEME-3 regular expression -------------------------------------------------------------------------------- TC[TCA][TA][AG]GAA -------------------------------------------------------------------------------- Time 13.53 secs. ******************************************************************************** ******************************************************************************** MOTIF AGACGCAG MEME-4 width = 8 sites = 11 llr = 114 E-value = 1.9e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif AGACGCAG MEME-4 Description -------------------------------------------------------------------------------- Simplified A 9:a:::7: pos.-specific C :::a2a3: probability G :a::8::a matrix T 1::::::: bits 2.3 * * * * 2.1 * * * * 1.9 *** * * 1.6 ***** * Relative 1.4 ****** * Entropy 1.2 ******** (15.0 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel AGACGCAG consensus C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGACGCAG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIV:1804769-1804849 21 8.58e-06 GGAAGACGAG AGACGCAG GCGGTACAAG chrIII:10628491-10628571 61 8.58e-06 CGAGGGGAAG AGACGCAG ACACGGGAAG chrX:15860751-15860831 4 8.58e-06 AAG AGACGCAG ACGGCAAAAC chrII:2748393-2748473 39 8.58e-06 CTGAAAAAAG AGACGCAG ACAGCTTGCG chrV:1366288-1366368 8 8.58e-06 AGACGTG AGACGCAG CGGGGAAAAC chrI:9601703-9601783 57 8.58e-06 CAAGACGAAG AGACGCAG ATAGAGAAAA chrIII:12528181-12528261 39 1.47e-05 CGGTGTTTGC AGACGCCG CATCACATTT chrII:347883-347963 73 1.47e-05 GGTGAGCGGA AGACGCCG chrV:20402976-20403056 55 2.36e-05 CAGCACTTTC AGACCCAG AAGCAATCGG chrIII:12673519-12673599 53 3.00e-05 GTGGTGGCCG AGACCCCG ACTCGGCCAG chrX:980794-980874 30 3.88e-05 CTTTAACATT TGACGCAG TTTTCGCAGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGACGCAG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:1804769-1804849 8.6e-06 20_[+4]_52 chrIII:10628491-10628571 8.6e-06 60_[+4]_12 chrX:15860751-15860831 8.6e-06 3_[+4]_69 chrII:2748393-2748473 8.6e-06 38_[+4]_34 chrV:1366288-1366368 8.6e-06 7_[+4]_65 chrI:9601703-9601783 8.6e-06 56_[+4]_16 chrIII:12528181-12528261 1.5e-05 38_[+4]_34 chrII:347883-347963 1.5e-05 72_[+4] chrV:20402976-20403056 2.4e-05 54_[+4]_18 chrIII:12673519-12673599 3e-05 52_[+4]_20 chrX:980794-980874 3.9e-05 29_[+4]_43 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGACGCAG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AGACGCAG width=8 seqs=11 chrIV:1804769-1804849 ( 21) AGACGCAG 1 chrIII:10628491-10628571 ( 61) AGACGCAG 1 chrX:15860751-15860831 ( 4) AGACGCAG 1 chrII:2748393-2748473 ( 39) AGACGCAG 1 chrV:1366288-1366368 ( 8) AGACGCAG 1 chrI:9601703-9601783 ( 57) AGACGCAG 1 chrIII:12528181-12528261 ( 39) AGACGCCG 1 chrII:347883-347963 ( 73) AGACGCCG 1 chrV:20402976-20403056 ( 55) AGACCCAG 1 chrIII:12673519-12673599 ( 53) AGACCCCG 1 chrX:980794-980874 ( 30) TGACGCAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGACGCAG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.0506 E= 1.9e+002 163 -1010 -1010 -172 -1010 -1010 233 -1010 177 -1010 -1010 -1010 -1010 227 -1010 -1010 -1010 -19 204 -1010 -1010 227 -1010 -1010 131 39 -1010 -1010 -1010 -1010 233 -1010 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGACGCAG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 11 E= 1.9e+002 0.909091 0.000000 0.000000 0.090909 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.181818 0.818182 0.000000 0.000000 1.000000 0.000000 0.000000 0.727273 0.272727 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGACGCAG MEME-4 regular expression -------------------------------------------------------------------------------- AGACGC[AC]G -------------------------------------------------------------------------------- Time 17.00 secs. ******************************************************************************** ******************************************************************************** MOTIF GCGTCTCT MEME-5 width = 8 sites = 12 llr = 121 E-value = 8.3e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCGTCTCT MEME-5 Description -------------------------------------------------------------------------------- Simplified A ::3::::: pos.-specific C :a::9:a3 probability G a:8::::: matrix T :::a1a:8 bits 2.3 ** * 2.1 ** * 1.9 ** * * 1.6 ** **** Relative 1.4 ******* Entropy 1.2 ******** (14.6 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GCGTCTCT consensus A C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGTCTCT MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:15860751-15860831 67 9.62e-06 AGTAGTATCT GCGTCTCT CACGCC chrII:506189-506269 67 9.62e-06 TCGTCGTCTC GCGTCTCT CGTCTT chrX:16218455-16218535 21 9.62e-06 GCACATGTCT GCGTCTCT CACATGTCAC chrI:663654-663734 18 9.62e-06 ctctcgtctc gcgtctct cgtctctAAC chrII:347883-347963 33 9.62e-06 AGGTGTGCCT GCGTCTCT TTGGCGAGAG chrIV:813519-813599 50 9.62e-06 GGCGGTCTCT GCGTCTCT CTCCCCCACA chrIV:6156987-6157067 19 1.63e-05 ATGTGTCTCT GCGTCTCC TCCTTCTGCA chrIV:14837061-14837141 15 1.63e-05 ATGATTGTCT GCGTCTCC CGCTTCTCTA chrV:6244736-6244816 42 3.05e-05 TCTAGTTTCA GCATCTCT CAATTTCTAA chrI:10756646-10756726 62 3.05e-05 TTCAACTTGA GCATCTCT TTTTCTTGGA chrV:1414751-1414831 19 4.03e-05 AGGCGGTTTA GCATCTCC GGCGGAAATT chrIII:634733-634813 57 5.42e-05 GTGCGTTGGC GCGTTTCT CGCGCGAAAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGTCTCT MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:15860751-15860831 9.6e-06 66_[+5]_6 chrII:506189-506269 9.6e-06 66_[+5]_6 chrX:16218455-16218535 9.6e-06 20_[+5]_52 chrI:663654-663734 9.6e-06 17_[+5]_55 chrII:347883-347963 9.6e-06 32_[+5]_40 chrIV:813519-813599 9.6e-06 49_[+5]_23 chrIV:6156987-6157067 1.6e-05 18_[+5]_54 chrIV:14837061-14837141 1.6e-05 14_[+5]_58 chrV:6244736-6244816 3e-05 41_[+5]_31 chrI:10756646-10756726 3e-05 61_[+5]_11 chrV:1414751-1414831 4e-05 18_[+5]_54 chrIII:634733-634813 5.4e-05 56_[+5]_16 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGTCTCT MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCGTCTCT width=8 seqs=12 chrX:15860751-15860831 ( 67) GCGTCTCT 1 chrII:506189-506269 ( 67) GCGTCTCT 1 chrX:16218455-16218535 ( 21) GCGTCTCT 1 chrI:663654-663734 ( 18) GCGTCTCT 1 chrII:347883-347963 ( 33) GCGTCTCT 1 chrIV:813519-813599 ( 50) GCGTCTCT 1 chrIV:6156987-6157067 ( 19) GCGTCTCC 1 chrIV:14837061-14837141 ( 15) GCGTCTCC 1 chrV:6244736-6244816 ( 42) GCATCTCT 1 chrI:10756646-10756726 ( 62) GCATCTCT 1 chrV:1414751-1414831 ( 19) GCATCTCC 1 chrIII:634733-634813 ( 57) GCGTTTCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGTCTCT MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.2284 E= 8.3e+002 -1023 -1023 233 -1023 -1023 227 -1023 -1023 -23 -1023 191 -1023 -1023 -1023 -1023 173 -1023 214 -1023 -185 -1023 -1023 -1023 173 -1023 227 -1023 -1023 -1023 27 -1023 132 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGTCTCT MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 12 E= 8.3e+002 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.250000 0.000000 0.750000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.916667 0.000000 0.083333 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.250000 0.000000 0.750000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGTCTCT MEME-5 regular expression -------------------------------------------------------------------------------- GC[GA]TCTC[TC] -------------------------------------------------------------------------------- Time 20.45 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:482896-482976 2.06e-02 80 chrV:3870516-3870596 2.81e-01 80 chrIII:1922669-1922749 5.08e-03 80 chrV:3874464-3874544 4.67e-02 31_[+1(1.70e-05)]_41 chrV:20402976-20403056 2.09e-06 28_[+2(6.09e-06)]_18_[+4(2.36e-05)]_\ 18 chrIII:5500911-5500991 6.48e-02 14_[+3(3.85e-05)]_58 chrX:12669089-12669169 1.17e-01 80 chrIV:6514864-6514944 8.56e-02 70_[+5(9.84e-05)]_2 chrIV:11388862-11388942 5.95e-01 80 chrV:6630923-6631003 7.80e-01 80 chrIII:10035934-10036014 1.56e-01 80 chrII:7977647-7977727 7.45e-01 80 chrI:11940193-11940273 2.25e-02 [+1(9.65e-05)]_72 chrV:8212127-8212207 1.16e-02 31_[+3(3.85e-05)]_41 chrX:12200692-12200772 6.82e-01 80 chrV:10862853-10862933 1.81e-01 80 chrV:618065-618145 1.62e-01 80 chrIV:15814228-15814308 5.51e-02 80 chrIII:11641516-11641596 2.39e-02 80 chrX:12516558-12516638 7.26e-03 80 chrV:3856067-3856147 1.71e-02 63_[+1(1.70e-05)]_9 chrX:2596772-2596852 2.64e-01 80 chrI:13006440-13006520 2.76e-01 80 chrIV:2734798-2734878 2.08e-01 80 chrIII:7115110-7115190 1.53e-02 80 chrV:396458-396538 6.04e-01 80 chrIV:16658901-16658981 2.67e-02 80 chrIII:12615945-12616025 8.35e-02 80 chrX:15344156-15344236 1.29e-01 80 chrIV:11760033-11760113 2.37e-01 80 chrX:2819066-2819146 5.17e-01 80 chrX:14562426-14562506 1.19e-01 50_[+3(3.85e-05)]_22 chrI:10754585-10754665 8.30e-01 80 chrII:9263918-9263998 5.10e-02 80 chrIV:4613668-4613748 2.72e-01 80 chrV:4794442-4794522 4.34e-01 80 chrV:404402-404482 6.72e-02 80 chrII:9117880-9117960 2.26e-01 80 chrV:10465617-10465697 3.53e-01 80 chrIV:9063655-9063735 6.50e-01 80 chrI:12549948-12550028 4.50e-03 29_[+2(6.49e-05)]_43 chrIV:4720711-4720791 3.72e-01 80 chrIII:10903401-10903481 8.81e-01 80 chrI:13161961-13162041 7.04e-01 80 chrIII:7090719-7090799 1.66e-01 80 chrV:9901257-9901337 1.50e-01 80 chrV:9128759-9128839 1.71e-01 80 chrI:7374831-7374911 1.14e-01 80 chrIII:13716379-13716459 3.69e-01 80 chrV:13253053-13253133 7.66e-01 80 chrIV:1739072-1739152 2.25e-02 55_[+3(6.47e-05)]_17 chrV:18710169-18710249 5.76e-01 80 chrIII:3671157-3671237 1.42e-01 80 chrI:9601703-9601783 5.25e-04 56_[+4(8.58e-06)]_3_[+1(4.21e-05)]_\ 5 chrI:4908255-4908335 4.97e-03 80 chrX:14492602-14492682 1.59e-01 80 chrV:4063711-4063791 5.64e-03 58_[+1(1.70e-05)]_14 chrII:1402330-1402410 3.72e-02 26_[+2(1.51e-05)]_46 chrV:20704165-20704245 1.01e-02 80 chrV:20493705-20493785 2.55e-01 80 chrIV:6511940-6512020 4.43e-02 27_[+3(3.85e-05)]_45 chrV:5204315-5204395 6.40e-02 80 chrI:9705697-9705777 8.73e-01 80 chrIV:4184942-4185022 2.31e-02 56_[+2(1.51e-05)]_16 chrV:5921948-5922028 7.62e-02 80 chrIV:813519-813599 7.20e-06 11_[+2(5.77e-05)]_12_[+1(4.21e-05)]_\ 10_[+5(9.62e-06)]_23 chrIV:1056576-1056656 6.18e-01 80 chrIII:8229658-8229738 1.34e-01 80 chrII:12506699-12506779 7.64e-01 80 chrX:5387725-5387805 4.18e-01 80 chrII:9115808-9115888 2.22e-03 28_[+3(3.85e-05)]_44 chrII:13016557-13016637 4.33e-01 80 chrIV:2896158-2896238 2.26e-01 61_[+2(6.49e-05)]_11 chrIII:8122084-8122164 5.13e-03 22_[+3(6.47e-05)]_16_[+2(8.82e-05)]_\ 26 chrX:1437235-1437315 3.42e-02 80 chrX:2464249-2464329 2.28e-03 80 chrI:10858077-10858157 7.68e-03 3_[+1(1.70e-05)]_69 chrV:12531203-12531283 4.75e-01 80 chrIV:14613579-14613659 5.54e-02 80 chrI:9149336-9149416 9.82e-01 80 chrX:14478360-14478440 2.58e-01 80 chrI:7209978-7210058 4.46e-01 80 chrIV:3519545-3519625 3.78e-03 16_[+4(1.47e-05)]_56 chrV:19190221-19190301 1.90e-01 80 chrIV:9053546-9053626 1.58e-02 23_[+3(3.85e-05)]_49 chrV:5939662-5939742 3.46e-01 80 chrV:18684659-18684739 9.27e-02 22_[+5(8.42e-05)]_30_[+5(8.42e-05)]_\ 12 chrII:13083913-13083993 3.09e-01 80 chrIII:10604459-10604539 1.01e-01 80 chrX:7446651-7446731 3.19e-02 56_[+1(4.21e-05)]_16 chrII:12622322-12622402 8.93e-01 80 chrX:13347421-13347501 5.79e-02 16_[+3(6.47e-05)]_56 chrX:1439083-1439163 9.83e-01 80 chrIV:5658417-5658497 6.12e-01 80 chrIV:10819299-10819379 9.68e-01 80 chrII:12382759-12382839 3.37e-05 7_[+4(8.58e-06)]_65 chrIV:14622239-14622319 1.35e-01 80 chrIV:10890245-10890325 1.61e-01 80 chrIV:3247083-3247163 3.12e-02 80 chrV:15182058-15182138 5.12e-01 80 chrIII:5639989-5640069 2.38e-01 80 chrV:10867767-10867847 6.40e-01 80 chrV:1149919-1149999 1.64e-01 80 chrV:9134116-9134196 1.72e-01 80 chrV:9474080-9474160 4.73e-01 80 chrIV:2349078-2349158 5.88e-04 16_[+2(1.51e-05)]_17_[+5(8.42e-05)]_\ 11_[+5(5.42e-05)]_12 chrIII:3855018-3855098 8.01e-01 80 chrII:347883-347963 6.26e-05 32_[+5(9.62e-06)]_32_[+4(1.47e-05)] chrIII:6352598-6352678 5.79e-02 6_[+3(6.47e-05)]_66 chrIV:10507728-10507808 1.01e-01 80 chrIII:13718692-13718772 9.95e-02 80 chrX:980794-980874 9.10e-02 29_[+4(3.88e-05)]_43 chrII:5327020-5327100 2.61e-02 80 chrI:6437557-6437637 4.25e-03 80 chrI:10591695-10591775 1.91e-02 28_[+2(2.57e-05)]_44 chrIII:4221020-4221100 1.27e-02 80 chrIII:2805242-2805322 1.28e-02 61_[+5(8.42e-05)]_11 chrIV:5200979-5201059 7.57e-02 80 chrI:663654-663734 1.75e-02 17_[+5(9.62e-06)]_55 chrIV:240444-240524 2.70e-01 80 chrIV:14837061-14837141 1.23e-01 14_[+5(1.63e-05)]_58 chrX:2854111-2854191 2.91e-03 54_[+3(6.47e-05)]_18 chrX:785496-785576 2.19e-01 80 chrV:1366288-1366368 1.47e-03 7_[+4(8.58e-06)]_65 chrV:392359-392439 9.69e-01 80 chrV:13366640-13366720 1.02e-02 40_[+1(4.21e-05)]_32 chrI:2273924-2274004 6.82e-03 80 chrX:12914379-12914459 1.61e-01 80 chrX:910486-910566 5.90e-02 71_[+1(9.65e-05)]_1 chrX:8963600-8963680 2.93e-02 80 chrIII:3857215-3857295 9.69e-01 80 chrIII:6009080-6009160 1.07e-01 80 chrX:3590618-3590698 3.91e-01 80 chrX:15983461-15983541 5.73e-01 80 chrX:16218455-16218535 6.88e-03 20_[+5(9.62e-06)]_52 chrX:2807512-2807592 1.00e-02 80 chrII:5959869-5959949 1.59e-02 80 chrIII:7074143-7074223 8.25e-02 13_[+2(8.82e-05)]_59 chrX:844830-844910 1.09e-01 80 chrIV:13430313-13430393 1.74e-02 80 chrIII:3695542-3695622 2.28e-02 65_[+2(5.77e-05)]_7 chrV:18712275-18712355 7.08e-01 80 chrIII:790792-790872 5.50e-01 80 chrI:13840049-13840129 3.61e-01 80 chrIII:12152305-12152385 3.91e-01 80 chrX:12702877-12702957 3.67e-01 80 chrII:13477370-13477450 5.08e-02 80 chrIV:9525175-9525255 3.58e-01 80 chrI:9371921-9372001 1.00e-01 80 chrX:8566764-8566844 9.51e-01 80 chrIII:12528181-12528261 7.57e-02 38_[+4(1.47e-05)]_34 chrI:7370330-7370410 5.10e-01 80 chrIV:3250165-3250245 2.59e-02 58_[+3(6.47e-05)]_14 chrIV:1953294-1953374 9.93e-01 80 chrI:879852-879932 2.13e-02 66_[+1(1.70e-05)]_6 chrI:10756646-10756726 6.23e-04 61_[+5(3.05e-05)]_11 chrX:12663644-12663724 8.94e-01 80 chrIII:10150876-10150956 6.31e-02 26_[+1(4.21e-05)]_46 chrIII:11935194-11935274 4.65e-02 72_[+2(2.57e-05)] chrIII:30552-30632 3.15e-02 33_[+1(9.65e-05)]_39 chrI:15035910-15035990 4.05e-02 80 chrI:4805455-4805535 1.31e-01 80 chrX:8090138-8090218 7.07e-01 80 chrII:5952409-5952489 2.90e-02 3_[+2(5.77e-05)]_69 chrII:9669127-9669207 2.55e-01 80 chrIII:12673519-12673599 3.96e-02 52_[+4(3.00e-05)]_20 chrII:386106-386186 2.30e-02 11_[+5(9.84e-05)]_61 chrIII:13152797-13152877 1.49e-03 58_[+4(8.58e-06)]_14 chrII:506189-506269 5.97e-03 66_[+5(9.62e-06)]_6 chrV:9545426-9545506 2.87e-01 80 chrIV:1483814-1483894 6.14e-03 47_[+1(4.21e-05)]_25 chrX:9928153-9928233 5.62e-02 80 chrII:5334807-5334887 3.51e-03 61_[+1(9.65e-05)]_11 chrV:13763877-13763957 1.89e-01 80 chrX:826087-826167 5.20e-01 80 chrV:11855113-11855193 8.87e-01 80 chrX:8048810-8048890 4.83e-01 80 chrII:5329080-5329160 6.93e-02 80 chrX:8961623-8961703 4.41e-01 80 chrV:10937458-10937538 1.34e-01 32_[+3(3.85e-05)]_40 chrIII:13439577-13439657 6.45e-01 80 chrIII:7839076-7839156 1.08e-01 47_[+3(6.47e-05)]_25 chrIII:10601020-10601100 6.82e-02 80 chrX:5298302-5298382 2.87e-02 43_[+2(8.82e-05)]_29 chrV:6244736-6244816 2.40e-03 41_[+5(3.05e-05)]_31 chrX:2802929-2803009 5.44e-01 80 chrII:12679810-12679890 1.72e-01 22_[+2(6.49e-05)]_50 chrII:2748393-2748473 9.46e-04 38_[+4(8.58e-06)]_34 chrIV:5561582-5561662 2.50e-01 80 chrIV:2052469-2052549 1.20e-01 80 chrV:1488800-1488880 4.75e-03 22_[+4(3.88e-05)]_50 chrIII:7142256-7142336 6.47e-01 80 chrI:6441453-6441533 6.80e-01 80 chrV:13591685-13591765 3.13e-01 80 chrX:9325118-9325198 2.60e-02 8_[+2(2.57e-05)]_64 chrX:1964987-1965067 6.71e-03 70_[+4(8.58e-06)]_2 chrII:6974160-6974240 9.99e-03 72_[+1(4.21e-05)] chrII:6321166-6321246 1.52e-03 33_[+2(1.51e-05)]_39 chrIV:11142607-11142687 4.16e-01 80 chrIII:5499094-5499174 2.93e-01 80 chrX:17545693-17545773 1.62e-01 80 chrIV:9725610-9725690 9.42e-03 41_[+1(9.65e-05)]_31 chrII:7283284-7283364 4.92e-01 80 chrIV:6156987-6157067 7.20e-02 18_[+5(1.63e-05)]_54 chrI:3070215-3070295 8.96e-04 44_[+2(2.57e-05)]_28 chrX:12204531-12204611 5.45e-01 80 chrII:9010447-9010527 4.71e-02 80 chrI:2662794-2662874 2.25e-01 80 chrIII:789793-789873 8.63e-03 35_[+1(9.65e-05)]_37 chrX:12899265-12899345 1.03e-01 80 chrIV:10339854-10339934 8.34e-01 80 chrII:6689241-6689321 6.17e-02 43_[+1(9.65e-05)]_29 chrX:5164188-5164268 1.18e-01 80 chrI:13854448-13854528 3.69e-01 80 chrX:9956724-9956804 9.03e-01 80 chrV:8662337-8662417 9.70e-01 80 chrIV:5595722-5595802 8.55e-01 80 chrV:20455803-20455883 2.00e-01 80 chrV:13568671-13568751 4.70e-01 80 chrI:12183232-12183312 9.10e-02 80 chrI:13688736-13688816 2.45e-01 80 chrX:1339080-1339160 4.26e-01 80 chrI:3096316-3096396 2.67e-02 6_[+2(4.47e-05)]_66 chrV:11733637-11733717 7.34e-02 48_[+2(2.99e-05)]_24 chrII:8059725-8059805 9.85e-01 80 chrII:10730843-10730923 8.02e-02 42_[+3(3.85e-05)]_30 chrIII:8322829-8322909 9.13e-01 80 chrV:10246585-10246665 1.24e-01 80 chrX:15860751-15860831 7.31e-06 3_[+4(8.58e-06)]_37_[+1(4.21e-05)]_\ 10_[+5(9.62e-06)]_6 chrII:9121158-9121238 1.74e-01 80 chrX:662056-662136 1.04e-01 4_[+1(9.65e-05)]_46_[+1(9.65e-05)]_\ 2_[+1(4.21e-05)]_4 chrIII:9310008-9310088 7.46e-01 80 chrIV:9403875-9403955 1.08e-01 80 chrIII:10628491-10628571 7.39e-04 13_[+4(8.58e-06)]_39_[+4(8.58e-06)]_\ 12 chrX:8958112-8958192 3.85e-03 54_[+3(6.47e-05)]_18 chrIV:13574148-13574228 6.37e-01 80 chrIII:634733-634813 1.41e-03 13_[+2(1.51e-05)]_35_[+5(5.42e-05)]_\ 16 chrI:5763842-5763922 2.36e-02 25_[+1(9.65e-05)]_47 chrV:3718689-3718769 3.98e-01 80 chrIV:5731750-5731830 1.27e-01 80 chrX:4890346-4890426 4.55e-01 80 chrIII:491253-491333 1.85e-02 53_[+2(2.99e-05)]_19 chrV:8170457-8170537 7.28e-01 80 chrI:323600-323680 9.63e-01 80 chrIII:29777-29857 8.97e-02 30_[+2(2.99e-05)]_42 chrIV:3694782-3694862 1.67e-03 50_[+2(6.09e-06)]_8_[+2(2.57e-05)]_\ 6 chrIV:4360669-4360749 2.17e-02 18_[+2(5.77e-05)]_54 chrX:2328962-2329042 9.10e-01 80 chrV:1414751-1414831 1.97e-04 18_[+5(4.03e-05)]_26_[+3(3.85e-05)]_\ 20 chrIV:1804769-1804849 9.51e-04 20_[+4(8.58e-06)]_52 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c28n02.farnam.hpc.yale.internal ********************************************************************************