******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/worm/fasta/RankLinear2.0_40/nhr-43.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrIII:7950594-7950674 1.0000 80 chrI:9816590-9816670 1.0000 80 chrII:14492503-14492583 1.0000 80 chrV:12552537-12552617 1.0000 80 chrIV:14985151-14985231 1.0000 80 chrIV:11902957-11903037 1.0000 80 chrX:2111057-2111137 1.0000 80 chrII:2399948-2400028 1.0000 80 chrIV:4235831-4235911 1.0000 80 chrV:7543887-7543967 1.0000 80 chrX:8485559-8485639 1.0000 80 chrIV:4526185-4526265 1.0000 80 chrII:10601045-10601125 1.0000 80 chrIV:11900614-11900694 1.0000 80 chrV:13607039-13607119 1.0000 80 chrIII:6216116-6216196 1.0000 80 chrX:4102394-4102474 1.0000 80 chrII:11372171-11372251 1.0000 80 chrIV:4237053-4237133 1.0000 80 chrII:549670-549750 1.0000 80 chrII:13145352-13145432 1.0000 80 chrII:7773576-7773656 1.0000 80 chrV:10940197-10940277 1.0000 80 chrIV:11903174-11903254 1.0000 80 chrI:11348707-11348787 1.0000 80 chrIII:6508492-6508572 1.0000 80 chrIII:759820-759900 1.0000 80 chrI:9312970-9313050 1.0000 80 chrII:13150107-13150187 1.0000 80 chrI:533543-533623 1.0000 80 chrIV:11901320-11901400 1.0000 80 chrII:14620164-14620244 1.0000 80 chrI:12500602-12500682 1.0000 80 chrII:12615597-12615677 1.0000 80 chrX:13349974-13350054 1.0000 80 chrX:10216544-10216624 1.0000 80 chrII:12942675-12942755 1.0000 80 chrIII:10537187-10537267 1.0000 80 chrV:1789651-1789731 1.0000 80 chrIV:4657659-4657739 1.0000 80 chrI:7472963-7473043 1.0000 80 chrIII:7948954-7949034 1.0000 80 chrX:14562797-14562877 1.0000 80 chrIII:5096876-5096956 1.0000 80 chrIV:11899579-11899659 1.0000 80 chrIV:10295270-10295350 1.0000 80 chrII:6889059-6889139 1.0000 80 chrV:13243362-13243442 1.0000 80 chrII:7533478-7533558 1.0000 80 chrI:12540793-12540873 1.0000 80 chrIV:11897893-11897973 1.0000 80 chrIV:8234097-8234177 1.0000 80 chrII:7533690-7533770 1.0000 80 chrX:15315396-15315476 1.0000 80 chrII:8732739-8732819 1.0000 80 chrI:12720250-12720330 1.0000 80 chrX:17421896-17421976 1.0000 80 chrII:7776393-7776473 1.0000 80 chrII:8819445-8819525 1.0000 80 chrII:8731141-8731221 1.0000 80 chrX:11059877-11059957 1.0000 80 chrII:1241326-1241406 1.0000 80 chrV:5693722-5693802 1.0000 80 chrIII:10716608-10716688 1.0000 80 chrI:9837201-9837281 1.0000 80 chrV:6354303-6354383 1.0000 80 chrX:5645818-5645898 1.0000 80 chrII:8854174-8854254 1.0000 80 chrX:8418540-8418620 1.0000 80 chrIV:13082949-13083029 1.0000 80 chrX:8504330-8504410 1.0000 80 chrII:11336251-11336331 1.0000 80 chrII:13636719-13636799 1.0000 80 chrII:1851042-1851122 1.0000 80 chrV:12354630-12354710 1.0000 80 chrIV:11809168-11809248 1.0000 80 chrI:12497070-12497150 1.0000 80 chrII:8822848-8822928 1.0000 80 chrII:11502122-11502202 1.0000 80 chrII:8734774-8734854 1.0000 80 chrV:6223857-6223937 1.0000 80 chrIV:12721268-12721348 1.0000 80 chrI:12501370-12501450 1.0000 80 chrV:4912477-4912557 1.0000 80 chrV:13650699-13650779 1.0000 80 chrIII:5874967-5875047 1.0000 80 chrV:12199613-12199693 1.0000 80 chrII:7343098-7343178 1.0000 80 chrV:5110863-5110943 1.0000 80 chrV:4647462-4647542 1.0000 80 chrX:4146955-4147035 1.0000 80 chrI:6497503-6497583 1.0000 80 chrV:539211-539291 1.0000 80 chrII:7544956-7545036 1.0000 80 chrV:8040825-8040905 1.0000 80 chrIV:8044751-8044831 1.0000 80 chrV:7417147-7417227 1.0000 80 chrII:9752433-9752513 1.0000 80 chrIII:9751228-9751308 1.0000 80 chrV:9148741-9148821 1.0000 80 chrII:14825559-14825639 1.0000 80 chrII:9344123-9344203 1.0000 80 chrV:9085916-9085996 1.0000 80 chrIV:13083530-13083610 1.0000 80 chrI:530466-530546 1.0000 80 chrX:6649723-6649803 1.0000 80 chrIV:11903804-11903884 1.0000 80 chrII:8745432-8745512 1.0000 80 chrIV:11225762-11225842 1.0000 80 chrIV:14613516-14613596 1.0000 80 chrIII:7492059-7492139 1.0000 80 chrV:13089743-13089823 1.0000 80 chrIV:4298264-4298344 1.0000 80 chrII:4435463-4435543 1.0000 80 chrIV:4216316-4216396 1.0000 80 chrX:13350177-13350257 1.0000 80 chrX:13357799-13357879 1.0000 80 chrX:8752703-8752783 1.0000 80 chrV:9654317-9654397 1.0000 80 chrV:4412220-4412300 1.0000 80 chrII:11846425-11846505 1.0000 80 chrII:12622317-12622397 1.0000 80 chrX:17420895-17420975 1.0000 80 chrIV:13394869-13394949 1.0000 80 chrV:13652502-13652582 1.0000 80 chrI:7870311-7870391 1.0000 80 chrV:10722858-10722938 1.0000 80 chrII:12051806-12051886 1.0000 80 chrV:19612285-19612365 1.0000 80 chrX:5147998-5148078 1.0000 80 chrX:15375467-15375547 1.0000 80 chrII:7531621-7531701 1.0000 80 chrI:5879697-5879777 1.0000 80 chrX:5630080-5630160 1.0000 80 chrIV:14870012-14870092 1.0000 80 chrX:4111562-4111642 1.0000 80 chrII:10661871-10661951 1.0000 80 chrII:12053059-12053139 1.0000 80 chrV:16213501-16213581 1.0000 80 chrX:2890364-2890444 1.0000 80 chrX:14894527-14894607 1.0000 80 chrX:12931851-12931931 1.0000 80 chrII:11852340-11852420 1.0000 80 chrIII:4096273-4096353 1.0000 80 chrII:8441017-8441097 1.0000 80 chrII:12055637-12055717 1.0000 80 chrX:5603502-5603582 1.0000 80 chrIV:9918120-9918200 1.0000 80 chrII:542509-542589 1.0000 80 chrIV:10615071-10615151 1.0000 80 chrIII:5165898-5165978 1.0000 80 chrI:6075135-6075215 1.0000 80 chrII:11838514-11838594 1.0000 80 chrV:4910676-4910756 1.0000 80 chrV:4918893-4918973 1.0000 80 chrIV:4396218-4396298 1.0000 80 chrV:11859254-11859334 1.0000 80 chrII:4866140-4866220 1.0000 80 chrX:14791368-14791448 1.0000 80 chrII:13680122-13680202 1.0000 80 chrIII:8980898-8980978 1.0000 80 chrI:7577321-7577401 1.0000 80 chrIII:5715126-5715206 1.0000 80 chrX:14792660-14792740 1.0000 80 chrX:17515359-17515439 1.0000 80 chrX:15497747-15497827 1.0000 80 chrX:16558254-16558334 1.0000 80 chrX:17638582-17638662 1.0000 80 chrI:10174899-10174979 1.0000 80 chrIII:12233550-12233630 1.0000 80 chrV:15564811-15564891 1.0000 80 chrIII:5089626-5089706 1.0000 80 chrIII:5921430-5921510 1.0000 80 chrIV:8313942-8314022 1.0000 80 chrII:14495497-14495577 1.0000 80 chrI:5074410-5074490 1.0000 80 chrIV:7233672-7233752 1.0000 80 chrII:7349242-7349322 1.0000 80 chrII:11645535-11645615 1.0000 80 chrV:12543094-12543174 1.0000 80 chrX:4109905-4109985 1.0000 80 chrI:7657270-7657350 1.0000 80 chrV:9147284-9147364 1.0000 80 chrII:9234003-9234083 1.0000 80 chrII:8818482-8818562 1.0000 80 chrIII:9806261-9806341 1.0000 80 chrIII:6943136-6943216 1.0000 80 chrII:8745880-8745960 1.0000 80 chrII:12060101-12060181 1.0000 80 chrV:9274817-9274897 1.0000 80 chrIII:3736623-3736703 1.0000 80 chrIV:13077801-13077881 1.0000 80 chrV:7414154-7414234 1.0000 80 chrII:10931163-10931243 1.0000 80 chrIV:7716315-7716395 1.0000 80 chrII:8820677-8820757 1.0000 80 chrX:11461711-11461791 1.0000 80 chrX:5628629-5628709 1.0000 80 chrII:14841394-14841474 1.0000 80 chrV:7407130-7407210 1.0000 80 chrIII:4323880-4323960 1.0000 80 chrIV:7238811-7238891 1.0000 80 chrI:1256140-1256220 1.0000 80 chrIV:9628505-9628585 1.0000 80 chrII:12625860-12625940 1.0000 80 chrV:13908473-13908553 1.0000 80 chrV:1594721-1594801 1.0000 80 chrII:11373009-11373089 1.0000 80 chrIV:12403550-12403630 1.0000 80 chrII:11836701-11836781 1.0000 80 chrII:7791301-7791381 1.0000 80 chrIV:3234411-3234491 1.0000 80 chrIII:5505280-5505360 1.0000 80 chrIII:10986596-10986676 1.0000 80 chrI:8449849-8449929 1.0000 80 chrI:10516741-10516821 1.0000 80 chrV:1593990-1594070 1.0000 80 chrX:7550563-7550643 1.0000 80 chrV:1168065-1168145 1.0000 80 chrII:7631342-7631422 1.0000 80 chrII:7774453-7774533 1.0000 80 chrV:13046866-13046946 1.0000 80 chrX:6281102-6281182 1.0000 80 chrI:7761658-7761738 1.0000 80 chrX:4520134-4520214 1.0000 80 chrII:8821379-8821459 1.0000 80 chrI:1219337-1219417 1.0000 80 chrIV:4517231-4517311 1.0000 80 chrII:11617041-11617121 1.0000 80 chrII:12961434-12961514 1.0000 80 chrX:17632478-17632558 1.0000 80 chrIV:13682911-13682991 1.0000 80 chrV:11147993-11148073 1.0000 80 chrX:3113067-3113147 1.0000 80 chrX:4138914-4138994 1.0000 80 chrIII:6148098-6148178 1.0000 80 chrV:8994384-8994464 1.0000 80 chrV:13089163-13089243 1.0000 80 chrI:7756926-7757006 1.0000 80 chrI:529592-529672 1.0000 80 chrI:11491454-11491534 1.0000 80 chrII:11833707-11833787 1.0000 80 chrIII:5918858-5918938 1.0000 80 chrV:13416244-13416324 1.0000 80 chrI:5432251-5432331 1.0000 80 chrIII:5942655-5942735 1.0000 80 chrX:5148545-5148625 1.0000 80 chrI:7871672-7871752 1.0000 80 chrIV:8826375-8826455 1.0000 80 chrV:11574788-11574868 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/worm/inference_raw/MEME/RankLinear2.0_40_nhr-43/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/worm/fasta/RankLinear2.0_40/nhr-43.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.294 C 0.207 G 0.212 T 0.287 Background letter frequencies (from file dataset with add-one prior applied): A 0.294 C 0.207 G 0.212 T 0.287 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF CCGCCTCC MEME-1 width = 8 sites = 14 llr = 142 E-value = 3.0e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCGCCTCC MEME-1 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C aa196:aa probability G ::9:12:: matrix T :::128:: bits 2.3 ** ** 2.0 ** ** 1.8 ** * ** 1.6 **** ** Relative 1.4 **** ** Entropy 1.1 **** *** (14.6 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CCGCCTCC consensus TG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGCCTCC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrII:11836701-11836781 7 4.79e-06 CCACCG CCGCCTCC GATCTCATAT chrX:6649723-6649803 32 4.79e-06 TCGTTTTCAA CCGCCTCC TTATACCATG chrII:7343098-7343178 72 4.79e-06 CTTCACGCCT CCGCCTCC A chrIV:4235831-4235911 69 4.79e-06 CGTGTCGATG CCGCCTCC AACC chrI:11491454-11491534 72 8.32e-06 TCCTCCGCCA CCGCCGCC A chrV:5693722-5693802 28 8.32e-06 GGCGGAATAT CCGCCGCC AGCCTGGCGT chrII:12625860-12625940 9 1.50e-05 ACACAAAA CCGCTTCC TGTTTGGTCG chrII:11645535-11645615 61 1.50e-05 CCGCCCACCT CCGCTTCC AATTATATAG chrII:14620164-14620244 30 1.50e-05 TCAAATTCTG CCGCTTCC AAAGGTGAGA chrIV:14613516-14613596 12 1.99e-05 ATAATTTAAT CCGCGTCC AAATGAATTA chrIV:13682911-13682991 37 2.45e-05 AAAAGACCTC CCCCCTCC CATCTCTCAC chrX:16558254-16558334 68 2.45e-05 AGCTGATTAT CCCCCTCC TTCGT chrV:4647462-4647542 13 3.31e-05 TGTTACTCGA CCGCGGCC ACGCTAAATA chrIII:5942655-5942735 67 4.31e-05 ACTTGGTTCT CCGTCTCC GAGGAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGCCTCC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:11836701-11836781 4.8e-06 6_[+1]_66 chrX:6649723-6649803 4.8e-06 31_[+1]_41 chrII:7343098-7343178 4.8e-06 71_[+1]_1 chrIV:4235831-4235911 4.8e-06 68_[+1]_4 chrI:11491454-11491534 8.3e-06 71_[+1]_1 chrV:5693722-5693802 8.3e-06 27_[+1]_45 chrII:12625860-12625940 1.5e-05 8_[+1]_64 chrII:11645535-11645615 1.5e-05 60_[+1]_12 chrII:14620164-14620244 1.5e-05 29_[+1]_43 chrIV:14613516-14613596 2e-05 11_[+1]_61 chrIV:13682911-13682991 2.5e-05 36_[+1]_36 chrX:16558254-16558334 2.5e-05 67_[+1]_5 chrV:4647462-4647542 3.3e-05 12_[+1]_60 chrIII:5942655-5942735 4.3e-05 66_[+1]_6 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGCCTCC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCGCCTCC width=8 seqs=14 chrII:11836701-11836781 ( 7) CCGCCTCC 1 chrX:6649723-6649803 ( 32) CCGCCTCC 1 chrII:7343098-7343178 ( 72) CCGCCTCC 1 chrIV:4235831-4235911 ( 69) CCGCCTCC 1 chrI:11491454-11491534 ( 72) CCGCCGCC 1 chrV:5693722-5693802 ( 28) CCGCCGCC 1 chrII:12625860-12625940 ( 9) CCGCTTCC 1 chrII:11645535-11645615 ( 61) CCGCTTCC 1 chrII:14620164-14620244 ( 30) CCGCTTCC 1 chrIV:14613516-14613596 ( 12) CCGCGTCC 1 chrIV:13682911-13682991 ( 37) CCCCCTCC 1 chrX:16558254-16558334 ( 68) CCCCCTCC 1 chrV:4647462-4647542 ( 13) CCGCGGCC 1 chrIII:5942655-5942735 ( 67) CCGTCTCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGCCTCC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.9532 E= 3.0e-001 -1045 227 -1045 -1045 -1045 227 -1045 -1045 -1045 -54 201 -1045 -1045 216 -1045 -200 -1045 163 -57 -42 -1045 -1045 2 145 -1045 227 -1045 -1045 -1045 227 -1045 -1045 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGCCTCC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 14 E= 3.0e-001 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.142857 0.857143 0.000000 0.000000 0.928571 0.000000 0.071429 0.000000 0.642857 0.142857 0.214286 0.000000 0.000000 0.214286 0.785714 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGCCTCC MEME-1 regular expression -------------------------------------------------------------------------------- CCGC[CT][TG]CC -------------------------------------------------------------------------------- Time 4.96 secs. ******************************************************************************** ******************************************************************************** MOTIF AAAARWGA MEME-2 width = 8 sites = 36 llr = 287 E-value = 7.3e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif AAAARWGA MEME-2 Description -------------------------------------------------------------------------------- Simplified A 7aa935:a pos.-specific C :::::2:: probability G 3::17:a: matrix T :::::3:: bits 2.3 * 2.0 * 1.8 ** ** 1.6 ** ** Relative 1.4 *** ** Entropy 1.1 ***** ** (11.5 bits) 0.9 ***** ** 0.7 ***** ** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel AAAAGAGA consensus G AT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAARWGA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:16558254-16558334 9 2.90e-05 AACCCTTA AAAAGAGA TAAGAGAAAA chrX:14792660-14792740 26 2.90e-05 TAGTCAACAA AAAAGAGA AGCTGTGCTT chrV:13650699-13650779 4 2.90e-05 CTG AAAAGAGA TATTATAATT chrV:6223857-6223937 39 2.90e-05 gagaatttAA AAAAGAGA GTTCTTAACT chrI:7472963-7473043 15 2.90e-05 GGGAAAAAAG AAAAGAGA GTATTTAACA chrI:11348707-11348787 28 2.90e-05 ATGATGTGAA AAAAGAGA TATAGTCTAA chrII:8820677-8820757 3 5.74e-05 TG AAAAGTGA TAACAGTGAT chrII:9234003-9234083 53 5.74e-05 TAATTGTGAT AAAAGTGA AAATTTTGGA chrIV:12721268-12721348 68 5.74e-05 ATCTGATAAG AAAAGTGA CCATA chrII:8854174-8854254 14 5.74e-05 TTCAAAGTGC AAAAGTGA CAGAATTACG chrII:8731141-8731221 59 5.74e-05 TCCGGTGTGA AAAAGTGA TCGGATTCTT chrIV:4517231-4517311 27 7.83e-05 CCGGCTGCGT GAAAGAGA AAGGCGCTGG chrX:14894527-14894607 26 7.83e-05 ATAGAATCGA GAAAGAGA TATTGCAAAA chrX:4111562-4111642 17 7.83e-05 GACGAAAAGC GAAAGAGA CACCTTATCA chrIV:13394869-13394949 6 7.83e-05 TGAAT GAAAGAGA TACACGAGGA chrI:12501370-12501450 70 7.83e-05 CGAATTCGGG GAAAGAGA TAT chrIII:759820-759900 2 7.83e-05 A GAAAGAGA TGACGGTTGT chrIII:8980898-8980978 12 9.87e-05 ATTTTCAAGA AAAAGCGA CTTACAGGTT chrIII:4096273-4096353 9 9.87e-05 gaagagga aaaagcga aggaacagag chrX:13349974-13350054 36 9.87e-05 TGCAGAATCC AAAAGCGA TGGGCTCACG chrIV:13077801-13077881 4 1.59e-04 TTC GAAAGTGA GAAGAGTCAC chrIV:7233672-7233752 62 1.59e-04 tcatcGAAAA AAAAAAGA TTTGAAAATA chrIII:5921430-5921510 10 1.59e-04 TGTGTTAAG AAAAAAGA TCAGCACACG chrII:13680122-13680202 18 1.59e-04 TTAATAGCGA AAAAAAGA TTTATGACAG chrX:8504330-8504410 55 1.59e-04 ATAGAATCGC AAAAAAGA CAAGAAAATC chrV:13607039-13607119 35 1.59e-04 ATAGAGAAGA AAAAAAGA TGAAATACAA chrV:9274817-9274897 33 2.13e-04 AATTATGTTG AAAAATGA AAGAAAGTTT chrII:10661871-10661951 49 2.92e-04 AGATCACCTG AAAAACGA CGTGATAAGG chrV:9085916-9085996 51 2.92e-04 CTACACACCA AAAAACGA GTTTTTCTAC chrIII:5096876-5096956 2 2.92e-04 C AAAAACGA TACAAATCAA chrV:12354630-12354710 44 3.20e-04 AAATCCTGAT GAAAATGA TGATAGCCTT chrII:10601045-10601125 5 3.20e-04 AACT GAAAATGA ATTTCAAATA chrII:8745432-8745512 62 3.40e-04 GCGAATCGGG AAAGGTGA TGGCGTGCTA chrII:14620164-14620244 38 3.40e-04 TGCCGCTTCC AAAGGTGA GAAGTTCAGA chrII:11336251-11336331 70 3.56e-04 AAGATTGTTG GAAGGAGA GGA chrIV:8313942-8314022 22 4.35e-04 TGGGTATTGG AAAGAAGA GGGGGAGGAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAARWGA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:16558254-16558334 2.9e-05 8_[+2]_64 chrX:14792660-14792740 2.9e-05 25_[+2]_47 chrV:13650699-13650779 2.9e-05 3_[+2]_69 chrV:6223857-6223937 2.9e-05 38_[+2]_34 chrI:7472963-7473043 2.9e-05 14_[+2]_58 chrI:11348707-11348787 2.9e-05 27_[+2]_45 chrII:8820677-8820757 5.7e-05 2_[+2]_70 chrII:9234003-9234083 5.7e-05 52_[+2]_20 chrIV:12721268-12721348 5.7e-05 67_[+2]_5 chrII:8854174-8854254 5.7e-05 13_[+2]_59 chrII:8731141-8731221 5.7e-05 58_[+2]_14 chrIV:4517231-4517311 7.8e-05 26_[+2]_46 chrX:14894527-14894607 7.8e-05 25_[+2]_47 chrX:4111562-4111642 7.8e-05 16_[+2]_56 chrIV:13394869-13394949 7.8e-05 5_[+2]_67 chrI:12501370-12501450 7.8e-05 69_[+2]_3 chrIII:759820-759900 7.8e-05 1_[+2]_71 chrIII:8980898-8980978 9.9e-05 11_[+2]_61 chrIII:4096273-4096353 9.9e-05 8_[+2]_64 chrX:13349974-13350054 9.9e-05 35_[+2]_37 chrIV:13077801-13077881 0.00016 3_[+2]_69 chrIV:7233672-7233752 0.00016 61_[+2]_11 chrIII:5921430-5921510 0.00016 9_[+2]_63 chrII:13680122-13680202 0.00016 17_[+2]_55 chrX:8504330-8504410 0.00016 54_[+2]_18 chrV:13607039-13607119 0.00016 34_[+2]_38 chrV:9274817-9274897 0.00021 32_[+2]_40 chrII:10661871-10661951 0.00029 48_[+2]_24 chrV:9085916-9085996 0.00029 50_[+2]_22 chrIII:5096876-5096956 0.00029 1_[+2]_71 chrV:12354630-12354710 0.00032 43_[+2]_29 chrII:10601045-10601125 0.00032 4_[+2]_68 chrII:8745432-8745512 0.00034 61_[+2]_11 chrII:14620164-14620244 0.00034 37_[+2]_35 chrII:11336251-11336331 0.00036 69_[+2]_3 chrIV:8313942-8314022 0.00043 21_[+2]_51 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAARWGA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AAAARWGA width=8 seqs=36 chrX:16558254-16558334 ( 9) AAAAGAGA 1 chrX:14792660-14792740 ( 26) AAAAGAGA 1 chrV:13650699-13650779 ( 4) AAAAGAGA 1 chrV:6223857-6223937 ( 39) AAAAGAGA 1 chrI:7472963-7473043 ( 15) AAAAGAGA 1 chrI:11348707-11348787 ( 28) AAAAGAGA 1 chrII:8820677-8820757 ( 3) AAAAGTGA 1 chrII:9234003-9234083 ( 53) AAAAGTGA 1 chrIV:12721268-12721348 ( 68) AAAAGTGA 1 chrII:8854174-8854254 ( 14) AAAAGTGA 1 chrII:8731141-8731221 ( 59) AAAAGTGA 1 chrIV:4517231-4517311 ( 27) GAAAGAGA 1 chrX:14894527-14894607 ( 26) GAAAGAGA 1 chrX:4111562-4111642 ( 17) GAAAGAGA 1 chrIV:13394869-13394949 ( 6) GAAAGAGA 1 chrI:12501370-12501450 ( 70) GAAAGAGA 1 chrIII:759820-759900 ( 2) GAAAGAGA 1 chrIII:8980898-8980978 ( 12) AAAAGCGA 1 chrIII:4096273-4096353 ( 9) AAAAGCGA 1 chrX:13349974-13350054 ( 36) AAAAGCGA 1 chrIV:13077801-13077881 ( 4) GAAAGTGA 1 chrIV:7233672-7233752 ( 62) AAAAAAGA 1 chrIII:5921430-5921510 ( 10) AAAAAAGA 1 chrII:13680122-13680202 ( 18) AAAAAAGA 1 chrX:8504330-8504410 ( 55) AAAAAAGA 1 chrV:13607039-13607119 ( 35) AAAAAAGA 1 chrV:9274817-9274897 ( 33) AAAAATGA 1 chrII:10661871-10661951 ( 49) AAAAACGA 1 chrV:9085916-9085996 ( 51) AAAAACGA 1 chrIII:5096876-5096956 ( 2) AAAAACGA 1 chrV:12354630-12354710 ( 44) GAAAATGA 1 chrII:10601045-10601125 ( 5) GAAAATGA 1 chrII:8745432-8745512 ( 62) AAAGGTGA 1 chrII:14620164-14620244 ( 38) AAAGGTGA 1 chrII:11336251-11336331 ( 70) GAAGGAGA 1 chrIV:8313942-8314022 ( 22) AAAGAAGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAARWGA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.8321 E= 7.3e+003 130 -1181 39 -1181 177 -1181 -1181 -1181 177 -1181 -1181 -1181 160 -1181 -93 -1181 18 -1181 165 -1181 84 -31 -1181 9 -1181 -1181 224 -1181 177 -1181 -1181 -1181 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAARWGA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 36 E= 7.3e+003 0.722222 0.000000 0.277778 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.888889 0.000000 0.111111 0.000000 0.333333 0.000000 0.666667 0.000000 0.527778 0.166667 0.000000 0.305556 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAARWGA MEME-2 regular expression -------------------------------------------------------------------------------- [AG]AAA[GA][AT]GA -------------------------------------------------------------------------------- Time 8.69 secs. ******************************************************************************** ******************************************************************************** MOTIF CYCCGCCC MEME-3 width = 8 sites = 2 llr = 23 E-value = 3.4e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif CYCCGCCC MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C a5aa:aaa probability G ::::a::: matrix T :5:::::: bits 2.3 * ****** 2.0 * ****** 1.8 * ****** 1.6 * ****** Relative 1.4 * ****** Entropy 1.1 ******** (16.9 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CCCCGCCC consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYCCGCCC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrII:12053059-12053139 9 3.45e-06 ATTTCCCA CCCCGCCC ACCAGGTTCT chrII:11645535-11645615 49 8.24e-06 TCTTTCGTGG CTCCGCCC ACCTCCGCTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYCCGCCC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:12053059-12053139 3.5e-06 8_[+3]_64 chrII:11645535-11645615 8.2e-06 48_[+3]_24 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYCCGCCC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CYCCGCCC width=8 seqs=2 chrII:12053059-12053139 ( 9) CCCCGCCC 1 chrII:11645535-11645615 ( 49) CTCCGCCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYCCGCCC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 13.1555 E= 3.4e+004 -765 227 -765 -765 -765 127 -765 80 -765 227 -765 -765 -765 227 -765 -765 -765 -765 223 -765 -765 227 -765 -765 -765 227 -765 -765 -765 227 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYCCGCCC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 3.4e+004 0.000000 1.000000 0.000000 0.000000 0.000000 0.500000 0.000000 0.500000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYCCGCCC MEME-3 regular expression -------------------------------------------------------------------------------- C[CT]CCGCCC -------------------------------------------------------------------------------- Time 12.32 secs. ******************************************************************************** ******************************************************************************** MOTIF GTGGTGGA MEME-4 width = 8 sites = 9 llr = 92 E-value = 4.6e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif GTGGTGGA MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::::::9 pos.-specific C :::::::1 probability G 8:aa:a9: matrix T 2a::a:1: bits 2.3 ** * 2.0 ** * 1.8 ***** 1.6 ****** Relative 1.4 ******** Entropy 1.1 ******** (14.7 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GTGGTGGA consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGTGGA MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIII:6943136-6943216 56 1.04e-05 CGTTGTGGCT GTGGTGGA CGAATTGGAG chrII:12622317-12622397 65 1.04e-05 ATCCGGTCAC GTGGTGGA TGTCAATG chrII:11336251-11336331 22 1.04e-05 CAGTTTTCGA GTGGTGGA AAAGGATCTT chrII:7533478-7533558 56 1.04e-05 CTTGGGAAGT GTGGTGGA CGGTAACGAA chrII:12615597-12615677 45 1.04e-05 TGGTCAGCAT GTGGTGGA GATGATAGTG chrV:7407130-7407210 28 2.44e-05 GTGAACACTT TTGGTGGA GACTAAACTT chrX:12931851-12931931 6 2.44e-05 GGAGA TTGGTGGA TTGTGAGAGT chrX:2111057-2111137 44 3.17e-05 AAGGTCATCC GTGGTGGC TGCCAAGCAA chrIV:4526185-4526265 31 4.57e-05 AGTTTTTGGT GTGGTGTA GCTTCCTGCG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGTGGA MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:6943136-6943216 1e-05 55_[+4]_17 chrII:12622317-12622397 1e-05 64_[+4]_8 chrII:11336251-11336331 1e-05 21_[+4]_51 chrII:7533478-7533558 1e-05 55_[+4]_17 chrII:12615597-12615677 1e-05 44_[+4]_28 chrV:7407130-7407210 2.4e-05 27_[+4]_45 chrX:12931851-12931931 2.4e-05 5_[+4]_67 chrX:2111057-2111137 3.2e-05 43_[+4]_29 chrIV:4526185-4526265 4.6e-05 30_[+4]_42 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGTGGA MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GTGGTGGA width=8 seqs=9 chrIII:6943136-6943216 ( 56) GTGGTGGA 1 chrII:12622317-12622397 ( 65) GTGGTGGA 1 chrII:11336251-11336331 ( 22) GTGGTGGA 1 chrII:7533478-7533558 ( 56) GTGGTGGA 1 chrII:12615597-12615677 ( 45) GTGGTGGA 1 chrV:7407130-7407210 ( 28) TTGGTGGA 1 chrX:12931851-12931931 ( 6) TTGGTGGA 1 chrX:2111057-2111137 ( 44) GTGGTGGC 1 chrIV:4526185-4526265 ( 31) GTGGTGTA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGTGGA MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.1193 E= 4.6e+004 -982 -982 187 -37 -982 -982 -982 180 -982 -982 224 -982 -982 -982 224 -982 -982 -982 -982 180 -982 -982 224 -982 -982 -982 207 -137 160 -90 -982 -982 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGTGGA MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 9 E= 4.6e+004 0.000000 0.000000 0.777778 0.222222 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.888889 0.111111 0.888889 0.111111 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGTGGA MEME-4 regular expression -------------------------------------------------------------------------------- [GT]TGGTGGA -------------------------------------------------------------------------------- Time 15.95 secs. ******************************************************************************** ******************************************************************************** MOTIF GYCCSCCC MEME-5 width = 8 sites = 2 llr = 22 E-value = 1.4e+005 ******************************************************************************** -------------------------------------------------------------------------------- Motif GYCCSCCC MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C :5aa5aaa probability G a:::5::: matrix T :5:::::: bits 2.3 * ** *** 2.0 * ** *** 1.8 * ** *** 1.6 * ** *** Relative 1.4 * ****** Entropy 1.1 ******** (15.9 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GCCCCCCC consensus T G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYCCSCCC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrI:529592-529672 6 6.99e-06 CGCGC GCCCGCCC GCGCAGATGG chrX:5603502-5603582 69 1.67e-05 TGTGGCCGGG GTCCCCCC GACC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYCCSCCC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:529592-529672 7e-06 5_[+5]_67 chrX:5603502-5603582 1.7e-05 68_[+5]_4 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYCCSCCC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GYCCSCCC width=8 seqs=2 chrI:529592-529672 ( 6) GCCCGCCC 1 chrX:5603502-5603582 ( 69) GTCCCCCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYCCSCCC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 13.1555 E= 1.4e+005 -765 -765 223 -765 -765 127 -765 80 -765 227 -765 -765 -765 227 -765 -765 -765 127 123 -765 -765 227 -765 -765 -765 227 -765 -765 -765 227 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYCCSCCC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 1.4e+005 0.000000 0.000000 1.000000 0.000000 0.000000 0.500000 0.000000 0.500000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.500000 0.500000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYCCSCCC MEME-5 regular expression -------------------------------------------------------------------------------- G[CT]CC[CG]CCC -------------------------------------------------------------------------------- Time 19.59 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:7950594-7950674 8.84e-01 80 chrI:9816590-9816670 9.20e-01 80 chrII:14492503-14492583 5.49e-01 80 chrV:12552537-12552617 9.72e-01 80 chrIV:14985151-14985231 5.57e-01 80 chrIV:11902957-11903037 6.75e-01 80 chrX:2111057-2111137 7.93e-02 43_[+4(3.17e-05)]_29 chrII:2399948-2400028 9.58e-01 80 chrIV:4235831-4235911 3.82e-03 68_[+1(4.79e-06)]_4 chrV:7543887-7543967 8.19e-01 80 chrX:8485559-8485639 8.85e-01 80 chrIV:4526185-4526265 2.53e-02 30_[+4(4.57e-05)]_42 chrII:10601045-10601125 3.33e-01 80 chrIV:11900614-11900694 6.73e-01 80 chrV:13607039-13607119 1.14e-02 80 chrIII:6216116-6216196 8.30e-01 80 chrX:4102394-4102474 2.36e-01 80 chrII:11372171-11372251 9.87e-01 80 chrIV:4237053-4237133 9.64e-01 80 chrII:549670-549750 5.62e-01 80 chrII:13145352-13145432 8.40e-01 80 chrII:7773576-7773656 7.07e-01 80 chrV:10940197-10940277 7.56e-01 80 chrIV:11903174-11903254 7.95e-01 80 chrI:11348707-11348787 9.19e-02 27_[+2(2.90e-05)]_45 chrIII:6508492-6508572 7.81e-01 80 chrIII:759820-759900 8.99e-02 1_[+2(7.83e-05)]_71 chrI:9312970-9313050 9.87e-01 80 chrII:13150107-13150187 8.31e-01 80 chrI:533543-533623 9.86e-01 80 chrIV:11901320-11901400 5.29e-01 80 chrII:14620164-14620244 1.06e-02 29_[+1(1.50e-05)]_43 chrI:12500602-12500682 1.02e-02 80 chrII:12615597-12615677 8.09e-02 44_[+4(1.04e-05)]_28 chrX:13349974-13350054 4.73e-02 35_[+2(9.87e-05)]_37 chrX:10216544-10216624 9.60e-01 80 chrII:12942675-12942755 6.46e-01 80 chrIII:10537187-10537267 9.80e-01 80 chrV:1789651-1789731 7.08e-01 80 chrIV:4657659-4657739 6.34e-01 80 chrI:7472963-7473043 1.93e-01 14_[+2(2.90e-05)]_58 chrIII:7948954-7949034 8.71e-01 80 chrX:14562797-14562877 4.98e-01 80 chrIII:5096876-5096956 1.13e-01 80 chrIV:11899579-11899659 3.56e-01 80 chrIV:10295270-10295350 7.70e-01 80 chrII:6889059-6889139 8.51e-01 80 chrV:13243362-13243442 8.68e-01 80 chrII:7533478-7533558 7.58e-02 55_[+4(1.04e-05)]_17 chrI:12540793-12540873 4.81e-01 80 chrIV:11897893-11897973 9.99e-01 80 chrIV:8234097-8234177 9.33e-01 80 chrII:7533690-7533770 6.16e-01 80 chrX:15315396-15315476 1.37e-01 80 chrII:8732739-8732819 1.30e-02 80 chrI:12720250-12720330 9.63e-01 80 chrX:17421896-17421976 4.99e-01 80 chrII:7776393-7776473 8.36e-01 80 chrII:8819445-8819525 5.58e-02 80 chrII:8731141-8731221 8.83e-02 58_[+2(5.74e-05)]_14 chrX:11059877-11059957 7.81e-01 80 chrII:1241326-1241406 5.71e-01 80 chrV:5693722-5693802 1.49e-03 27_[+1(8.32e-06)]_45 chrIII:10716608-10716688 9.49e-01 80 chrI:9837201-9837281 7.80e-01 80 chrV:6354303-6354383 9.31e-01 80 chrX:5645818-5645898 6.20e-01 80 chrII:8854174-8854254 1.71e-02 13_[+2(5.74e-05)]_32_[+1(9.69e-05)]_\ 19 chrX:8418540-8418620 7.39e-01 80 chrIV:13082949-13083029 9.27e-01 80 chrX:8504330-8504410 1.26e-01 80 chrII:11336251-11336331 1.33e-02 21_[+4(1.04e-05)]_51 chrII:13636719-13636799 6.41e-01 80 chrII:1851042-1851122 8.94e-01 80 chrV:12354630-12354710 1.30e-02 25_[+5(5.69e-05)]_47 chrIV:11809168-11809248 9.89e-01 80 chrI:12497070-12497150 5.61e-01 80 chrII:8822848-8822928 3.65e-01 80 chrII:11502122-11502202 9.96e-01 80 chrII:8734774-8734854 8.22e-01 80 chrV:6223857-6223937 4.16e-02 38_[+2(2.90e-05)]_34 chrIV:12721268-12721348 1.91e-01 67_[+2(5.74e-05)]_5 chrI:12501370-12501450 4.98e-02 69_[+2(7.83e-05)]_3 chrV:4912477-4912557 8.90e-01 80 chrV:13650699-13650779 4.65e-02 3_[+2(2.90e-05)]_69 chrIII:5874967-5875047 8.10e-01 80 chrV:12199613-12199693 3.55e-01 80 chrII:7343098-7343178 5.86e-04 71_[+1(4.79e-06)]_1 chrV:5110863-5110943 8.63e-01 80 chrV:4647462-4647542 1.97e-02 12_[+1(3.31e-05)]_60 chrX:4146955-4147035 6.68e-01 80 chrI:6497503-6497583 1.64e-01 80 chrV:539211-539291 5.26e-01 80 chrII:7544956-7545036 2.87e-01 80 chrV:8040825-8040905 9.54e-01 80 chrIV:8044751-8044831 9.71e-01 80 chrV:7417147-7417227 8.06e-01 80 chrII:9752433-9752513 8.36e-01 80 chrIII:9751228-9751308 1.79e-01 80 chrV:9148741-9148821 9.89e-01 80 chrII:14825559-14825639 4.99e-01 80 chrII:9344123-9344203 7.87e-01 80 chrV:9085916-9085996 2.49e-01 80 chrIV:13083530-13083610 9.82e-01 80 chrI:530466-530546 1.23e-02 2_[+5(5.69e-05)]_70 chrX:6649723-6649803 1.06e-02 31_[+1(4.79e-06)]_41 chrIV:11903804-11903884 9.87e-01 80 chrII:8745432-8745512 1.23e-01 80 chrIV:11225762-11225842 8.28e-02 80 chrIV:14613516-14613596 2.87e-02 11_[+1(1.99e-05)]_61 chrIII:7492059-7492139 4.33e-01 80 chrV:13089743-13089823 9.93e-01 80 chrIV:4298264-4298344 2.00e-01 80 chrII:4435463-4435543 9.92e-01 80 chrIV:4216316-4216396 4.80e-01 80 chrX:13350177-13350257 9.61e-01 80 chrX:13357799-13357879 9.82e-01 80 chrX:8752703-8752783 3.61e-01 80 chrV:9654317-9654397 9.92e-01 80 chrV:4412220-4412300 1.00e+00 80 chrII:11846425-11846505 9.85e-01 80 chrII:12622317-12622397 1.20e-01 64_[+4(1.04e-05)]_8 chrX:17420895-17420975 9.63e-01 80 chrIV:13394869-13394949 1.56e-01 5_[+2(7.83e-05)]_67 chrV:13652502-13652582 7.97e-01 80 chrI:7870311-7870391 3.11e-01 80 chrV:10722858-10722938 6.62e-01 80 chrII:12051806-12051886 2.94e-01 80 chrV:19612285-19612365 2.31e-01 12_[+4(8.45e-05)]_60 chrX:5147998-5148078 8.08e-01 80 chrX:15375467-15375547 8.07e-01 80 chrII:7531621-7531701 9.61e-01 80 chrI:5879697-5879777 8.11e-03 80 chrX:5630080-5630160 9.13e-03 42_[+4(8.45e-05)]_30 chrIV:14870012-14870092 5.71e-01 80 chrX:4111562-4111642 1.29e-01 16_[+2(7.83e-05)]_56 chrII:10661871-10661951 5.83e-01 80 chrII:12053059-12053139 2.55e-04 8_[+3(3.45e-06)]_64 chrV:16213501-16213581 4.60e-01 80 chrX:2890364-2890444 1.00e+00 80 chrX:14894527-14894607 1.42e-01 25_[+2(7.83e-05)]_47 chrX:12931851-12931931 1.24e-01 5_[+4(2.44e-05)]_67 chrII:11852340-11852420 4.71e-01 80 chrIII:4096273-4096353 2.71e-01 8_[+2(9.87e-05)]_64 chrII:8441017-8441097 8.26e-01 80 chrII:12055637-12055717 9.17e-01 80 chrX:5603502-5603582 9.53e-04 68_[+5(1.67e-05)]_4 chrIV:9918120-9918200 3.62e-01 80 chrII:542509-542589 5.04e-04 80 chrIV:10615071-10615151 2.09e-01 80 chrIII:5165898-5165978 7.66e-01 80 chrI:6075135-6075215 8.14e-01 80 chrII:11838514-11838594 6.48e-01 80 chrV:4910676-4910756 3.79e-01 80 chrV:4918893-4918973 1.20e-01 80 chrIV:4396218-4396298 9.54e-01 80 chrV:11859254-11859334 5.95e-01 80 chrII:4866140-4866220 7.10e-01 80 chrX:14791368-14791448 1.69e-01 80 chrII:13680122-13680202 1.33e-01 80 chrIII:8980898-8980978 1.53e-01 11_[+2(9.87e-05)]_61 chrI:7577321-7577401 7.89e-01 80 chrIII:5715126-5715206 9.93e-01 80 chrX:14792660-14792740 9.29e-02 25_[+2(2.90e-05)]_47 chrX:17515359-17515439 1.41e-05 62_[+5(6.99e-06)]_10 chrX:15497747-15497827 4.27e-01 80 chrX:16558254-16558334 2.93e-04 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chrX:5148545-5148625 8.19e-01 80 chrI:7871672-7871752 9.91e-01 80 chrIV:8826375-8826455 9.76e-01 80 chrV:11574788-11574868 9.99e-01 80 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n10.farnam.hpc.yale.internal ********************************************************************************