******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/worm/fasta/RankLinear2.0_40/nhr-27.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrIV:5544948-5545028 1.0000 80 chrII:7900235-7900315 1.0000 80 chrV:10023445-10023525 1.0000 80 chrIII:3502348-3502428 1.0000 80 chrX:16944712-16944792 1.0000 80 chrIV:8979348-8979428 1.0000 80 chrV:18640148-18640228 1.0000 80 chrIII:10296053-10296133 1.0000 80 chrV:10237981-10238061 1.0000 80 chrV:11888894-11888974 1.0000 80 chrIV:6326002-6326082 1.0000 80 chrIV:14796091-14796171 1.0000 80 chrII:4696179-4696259 1.0000 80 chrIV:11024372-11024452 1.0000 80 chrX:14791501-14791581 1.0000 80 chrIV:11146225-11146305 1.0000 80 chrIV:4706161-4706241 1.0000 80 chrIV:7962141-7962221 1.0000 80 chrII:7866293-7866373 1.0000 80 chrI:4913311-4913391 1.0000 80 chrI:14758949-14759029 1.0000 80 chrIII:8981717-8981797 1.0000 80 chrIV:3297026-3297106 1.0000 80 chrV:9343254-9343334 1.0000 80 chrI:3564729-3564809 1.0000 80 chrV:6335399-6335479 1.0000 80 chrI:13953352-13953432 1.0000 80 chrII:4702898-4702978 1.0000 80 chrV:5284347-5284427 1.0000 80 chrIII:7495021-7495101 1.0000 80 chrI:5103396-5103476 1.0000 80 chrIV:8377598-8377678 1.0000 80 chrIII:9509974-9510054 1.0000 80 chrII:8441661-8441741 1.0000 80 chrII:8464675-8464755 1.0000 80 chrX:1452014-1452094 1.0000 80 chrI:9624533-9624613 1.0000 80 chrV:14354539-14354619 1.0000 80 chrI:9100929-9101009 1.0000 80 chrIII:8686011-8686091 1.0000 80 chrV:7733161-7733241 1.0000 80 chrV:14353201-14353281 1.0000 80 chrII:11880650-11880730 1.0000 80 chrIII:11091222-11091302 1.0000 80 chrV:4516678-4516758 1.0000 80 chrIII:3869610-3869690 1.0000 80 chrI:12654792-12654872 1.0000 80 chrIV:14083742-14083822 1.0000 80 chrIII:10812975-10813055 1.0000 80 chrIV:396796-396876 1.0000 80 chrIV:3032221-3032301 1.0000 80 chrII:6587372-6587452 1.0000 80 chrX:11163316-11163396 1.0000 80 chrX:14290082-14290162 1.0000 80 chrX:1010830-1010910 1.0000 80 chrV:4688676-4688756 1.0000 80 chrX:17420950-17421030 1.0000 80 chrIII:11830605-11830685 1.0000 80 chrIII:4491518-4491598 1.0000 80 chrI:8135853-8135933 1.0000 80 chrIII:7731794-7731874 1.0000 80 chrIV:10492468-10492548 1.0000 80 chrI:2878579-2878659 1.0000 80 chrIV:13300917-13300997 1.0000 80 chrIII:2811548-2811628 1.0000 80 chrIV:3336733-3336813 1.0000 80 chrI:7602344-7602424 1.0000 80 chrIII:12685940-12686020 1.0000 80 chrIII:12598990-12599070 1.0000 80 chrII:12766747-12766827 1.0000 80 chrIII:4018977-4019057 1.0000 80 chrIII:5230568-5230648 1.0000 80 chrV:103050-103130 1.0000 80 chrI:7492322-7492402 1.0000 80 chrV:10021676-10021756 1.0000 80 chrI:14718868-14718948 1.0000 80 chrIII:8639300-8639380 1.0000 80 chrV:1158351-1158431 1.0000 80 chrX:14808845-14808925 1.0000 80 chrIV:13036261-13036341 1.0000 80 chrIII:4018215-4018295 1.0000 80 chrI:378768-378848 1.0000 80 chrIII:5321790-5321870 1.0000 80 chrII:5353778-5353858 1.0000 80 chrIII:12499442-12499522 1.0000 80 chrIII:10740621-10740701 1.0000 80 chrIII:13603792-13603872 1.0000 80 chrIII:1419974-1420054 1.0000 80 chrV:11538292-11538372 1.0000 80 chrII:1323557-1323637 1.0000 80 chrIV:7506194-7506274 1.0000 80 chrI:7083717-7083797 1.0000 80 chrII:12242684-12242764 1.0000 80 chrII:8141251-8141331 1.0000 80 chrIV:1711246-1711326 1.0000 80 chrI:4911577-4911657 1.0000 80 chrX:15200932-15201012 1.0000 80 chrI:6219759-6219839 1.0000 80 chrIII:11185867-11185947 1.0000 80 chrI:7079285-7079365 1.0000 80 chrV:13649979-13650059 1.0000 80 chrIII:11792799-11792879 1.0000 80 chrI:14058692-14058772 1.0000 80 chrIII:13464684-13464764 1.0000 80 chrIV:17281346-17281426 1.0000 80 chrV:9318250-9318330 1.0000 80 chrII:12345075-12345155 1.0000 80 chrI:9057800-9057880 1.0000 80 chrV:1154917-1154997 1.0000 80 chrI:7656707-7656787 1.0000 80 chrX:2531409-2531489 1.0000 80 chrIII:10506044-10506124 1.0000 80 chrIV:5473530-5473610 1.0000 80 chrX:14478839-14478919 1.0000 80 chrI:5372745-5372825 1.0000 80 chrX:15668249-15668329 1.0000 80 chrI:461711-461791 1.0000 80 chrII:3439303-3439383 1.0000 80 chrIII:5940722-5940802 1.0000 80 chrIV:17089094-17089174 1.0000 80 chrI:10085828-10085908 1.0000 80 chrI:3826648-3826728 1.0000 80 chrI:4645424-4645504 1.0000 80 chrIV:11377698-11377778 1.0000 80 chrV:9786910-9786990 1.0000 80 chrI:4177484-4177564 1.0000 80 chrX:6867886-6867966 1.0000 80 chrIII:835986-836066 1.0000 80 chrV:7432753-7432833 1.0000 80 chrII:10542906-10542986 1.0000 80 chrIV:4748600-4748680 1.0000 80 chrIII:7977606-7977686 1.0000 80 chrII:14018219-14018299 1.0000 80 chrIV:9477700-9477780 1.0000 80 chrII:8747445-8747525 1.0000 80 chrII:5901696-5901776 1.0000 80 chrIII:5557583-5557663 1.0000 80 chrX:14476859-14476939 1.0000 80 chrV:20847809-20847889 1.0000 80 chrV:8496167-8496247 1.0000 80 chrX:17419952-17420032 1.0000 80 chrX:5713656-5713736 1.0000 80 chrX:13349399-13349479 1.0000 80 chrIV:14612629-14612709 1.0000 80 chrX:12458225-12458305 1.0000 80 chrII:8933842-8933922 1.0000 80 chrII:8131516-8131596 1.0000 80 chrIII:11946503-11946583 1.0000 80 chrV:11075968-11076048 1.0000 80 chrV:4628596-4628676 1.0000 80 chrIII:9054002-9054082 1.0000 80 chrV:14855824-14855904 1.0000 80 chrX:9551263-9551343 1.0000 80 chrI:11374418-11374498 1.0000 80 chrI:13576071-13576151 1.0000 80 chrX:9637814-9637894 1.0000 80 chrV:13556847-13556927 1.0000 80 chrII:11759438-11759518 1.0000 80 chrI:12065867-12065947 1.0000 80 chrV:20497808-20497888 1.0000 80 chrIV:11147173-11147253 1.0000 80 chrX:8154677-8154757 1.0000 80 chrV:6888996-6889076 1.0000 80 chrIV:11026079-11026159 1.0000 80 chrII:8547095-8547175 1.0000 80 chrX:9622780-9622860 1.0000 80 chrIV:4880758-4880838 1.0000 80 chrV:14055227-14055307 1.0000 80 chrI:9380259-9380339 1.0000 80 chrI:7493111-7493191 1.0000 80 chrI:9166940-9167020 1.0000 80 chrX:6744074-6744154 1.0000 80 chrX:15297517-15297597 1.0000 80 chrI:2514266-2514346 1.0000 80 chrIV:16398427-16398507 1.0000 80 chrII:6968321-6968401 1.0000 80 chrII:11545458-11545538 1.0000 80 chrI:2869848-2869928 1.0000 80 chrIII:10621401-10621481 1.0000 80 chrX:14115609-14115689 1.0000 80 chrII:12678275-12678355 1.0000 80 chrII:6061652-6061732 1.0000 80 chrI:6094525-6094605 1.0000 80 chrI:16981-17061 1.0000 80 chrII:11974585-11974665 1.0000 80 chrIII:7278675-7278755 1.0000 80 chrII:5292314-5292394 1.0000 80 chrIII:7520793-7520873 1.0000 80 chrI:12652245-12652325 1.0000 80 chrX:10963846-10963926 1.0000 80 chrIII:502778-502858 1.0000 80 chrIII:11921786-11921866 1.0000 80 chrX:6742159-6742239 1.0000 80 chrIII:1604672-1604752 1.0000 80 chrIII:5211397-5211477 1.0000 80 chrIII:7184324-7184404 1.0000 80 chrIV:7083480-7083560 1.0000 80 chrII:8075488-8075568 1.0000 80 chrX:12363049-12363129 1.0000 80 chrI:12039966-12040046 1.0000 80 chrIII:13068543-13068623 1.0000 80 chrX:12661202-12661282 1.0000 80 chrII:11484751-11484831 1.0000 80 chrX:12106165-12106245 1.0000 80 chrII:5782054-5782134 1.0000 80 chrIII:9717408-9717488 1.0000 80 chrX:6286400-6286480 1.0000 80 chrX:7181798-7181878 1.0000 80 chrX:489830-489910 1.0000 80 chrV:14685702-14685782 1.0000 80 chrV:13468321-13468401 1.0000 80 chrI:12198721-12198801 1.0000 80 chrIV:16415208-16415288 1.0000 80 chrV:16370175-16370255 1.0000 80 chrIII:8443812-8443892 1.0000 80 chrII:6721726-6721806 1.0000 80 chrII:4942520-4942600 1.0000 80 chrI:8259516-8259596 1.0000 80 chrIV:16399173-16399253 1.0000 80 chrIII:5715662-5715742 1.0000 80 chrIII:4649417-4649497 1.0000 80 chrI:13663335-13663415 1.0000 80 chrV:19643226-19643306 1.0000 80 chrII:7184028-7184108 1.0000 80 chrX:16056581-16056661 1.0000 80 chrX:13121319-13121399 1.0000 80 chrV:15191020-15191100 1.0000 80 chrV:53520-53600 1.0000 80 chrIV:7845810-7845890 1.0000 80 chrI:5706973-5707053 1.0000 80 chrIII:6887721-6887801 1.0000 80 chrX:13145243-13145323 1.0000 80 chrIV:14071018-14071098 1.0000 80 chrIII:8865594-8865674 1.0000 80 chrX:8638683-8638763 1.0000 80 chrII:5032788-5032868 1.0000 80 chrI:8426848-8426928 1.0000 80 chrIII:5305874-5305954 1.0000 80 chrX:12563755-12563835 1.0000 80 chrIV:7574099-7574179 1.0000 80 chrX:1379571-1379651 1.0000 80 chrIV:11474212-11474292 1.0000 80 chrIII:10624761-10624841 1.0000 80 chrX:13307030-13307110 1.0000 80 chrI:12966889-12966969 1.0000 80 chrII:12494681-12494761 1.0000 80 chrII:9940534-9940614 1.0000 80 chrV:8228986-8229066 1.0000 80 chrIII:1424514-1424594 1.0000 80 chrI:3849-3929 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/worm/inference_raw/MEME/RankLinear2.0_40_nhr-27/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/worm/fasta/RankLinear2.0_40/nhr-27.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.27 C 0.228 G 0.233 T 0.27 Background letter frequencies (from file dataset with add-one prior applied): A 0.27 C 0.228 G 0.233 T 0.27 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF TCGAMCCC MEME-1 width = 8 sites = 17 llr = 169 E-value = 7.7e-003 ******************************************************************************** -------------------------------------------------------------------------------- Motif TCGAMCCC MEME-1 Description -------------------------------------------------------------------------------- Simplified A :::a6::: pos.-specific C :8::4aaa probability G ::a:1::: matrix T a2:::::: bits 2.1 * *** 1.9 * ** *** 1.7 * ** *** 1.5 * ** *** Relative 1.3 **** *** Entropy 1.1 **** *** (14.3 bits) 0.9 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TCGAACCC consensus T C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCGAMCCC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:13307030-13307110 58 1.24e-05 GATCGCCGGT TCGAACCC GGCTAGGACC chrX:1379571-1379651 47 1.24e-05 TCGGGGGGAA TCGAACCC CCGTCGAATG chrIII:6887721-6887801 22 1.24e-05 CCTAGGGGAC TCGAACCC CTGACCTTAA chrIII:1604672-1604752 45 1.24e-05 TTGCGGGGAA TCGAACCC CGGCCTTATG chrX:14478839-14478919 53 1.24e-05 AATGCGGGGC TCGAACCC GCGACAACCA chrX:11163316-11163396 57 1.24e-05 AGAGTGGGAT TCGAACCC ACGCCCCCGA chrII:5032788-5032868 37 2.29e-05 GGTCGCAGGT TCGACCCC TGCTGGCGGC chrV:16370175-16370255 27 2.29e-05 GGGGTTCGGC TCGACCCC CGCTGCCGCA chrIII:502778-502858 4 2.29e-05 TGT TCGACCCC CACGCAGTGT chrX:15297517-15297597 9 2.29e-05 TCGCAGGT TCGACCCC TGCTGGCGGC chrI:9380259-9380339 45 2.29e-05 ATTCTCAATT TCGACCCC ACCACCCTTG chrX:2531409-2531489 7 2.29e-05 GCAGGT TCGACCCC TGCTGGCGGC chrX:489830-489910 53 3.75e-05 CGGCCGGGAA TTGAACCC GGGTCTCGCA chrI:2514266-2514346 48 3.75e-05 GGAGGCGGAA TTGAACCC GTGGTGTTGC chrX:9622780-9622860 59 3.75e-05 GTATGGGGAA TTGAACCC CAGCCCTCTC chrX:9637814-9637894 53 3.75e-05 GTATGGGGAA TTGAACCC CAGCCCTCTC chrI:12065867-12065947 52 6.06e-05 GGTCGGTGGT TCGAGCCC GCCCGAGATC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCGAMCCC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:13307030-13307110 1.2e-05 57_[+1]_15 chrX:1379571-1379651 1.2e-05 46_[+1]_26 chrIII:6887721-6887801 1.2e-05 21_[+1]_51 chrIII:1604672-1604752 1.2e-05 44_[+1]_28 chrX:14478839-14478919 1.2e-05 52_[+1]_20 chrX:11163316-11163396 1.2e-05 56_[+1]_16 chrII:5032788-5032868 2.3e-05 36_[+1]_36 chrV:16370175-16370255 2.3e-05 26_[+1]_46 chrIII:502778-502858 2.3e-05 3_[+1]_69 chrX:15297517-15297597 2.3e-05 8_[+1]_64 chrI:9380259-9380339 2.3e-05 44_[+1]_28 chrX:2531409-2531489 2.3e-05 6_[+1]_66 chrX:489830-489910 3.8e-05 52_[+1]_20 chrI:2514266-2514346 3.8e-05 47_[+1]_25 chrX:9622780-9622860 3.8e-05 58_[+1]_14 chrX:9637814-9637894 3.8e-05 52_[+1]_20 chrI:12065867-12065947 6.1e-05 51_[+1]_21 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCGAMCCC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TCGAMCCC width=8 seqs=17 chrX:13307030-13307110 ( 58) TCGAACCC 1 chrX:1379571-1379651 ( 47) TCGAACCC 1 chrIII:6887721-6887801 ( 22) TCGAACCC 1 chrIII:1604672-1604752 ( 45) TCGAACCC 1 chrX:14478839-14478919 ( 53) TCGAACCC 1 chrX:11163316-11163396 ( 57) TCGAACCC 1 chrII:5032788-5032868 ( 37) TCGACCCC 1 chrV:16370175-16370255 ( 27) TCGACCCC 1 chrIII:502778-502858 ( 4) TCGACCCC 1 chrX:15297517-15297597 ( 9) TCGACCCC 1 chrI:9380259-9380339 ( 45) TCGACCCC 1 chrX:2531409-2531489 ( 7) TCGACCCC 1 chrX:489830-489910 ( 53) TTGAACCC 1 chrI:2514266-2514346 ( 48) TTGAACCC 1 chrX:9622780-9622860 ( 59) TTGAACCC 1 chrX:9637814-9637894 ( 53) TTGAACCC 1 chrI:12065867-12065947 ( 52) TCGAGCCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCGAMCCC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.4326 E= 7.7e-003 -1073 -1073 -1073 189 -1073 175 -1073 -20 -1073 -1073 210 -1073 189 -1073 -1073 -1073 112 63 -198 -1073 -1073 213 -1073 -1073 -1073 213 -1073 -1073 -1073 213 -1073 -1073 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCGAMCCC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 17 E= 7.7e-003 0.000000 0.000000 0.000000 1.000000 0.000000 0.764706 0.000000 0.235294 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.588235 0.352941 0.058824 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCGAMCCC MEME-1 regular expression -------------------------------------------------------------------------------- T[CT]GA[AC]CCC -------------------------------------------------------------------------------- Time 9.26 secs. ******************************************************************************** ******************************************************************************** MOTIF TAGCTCAG MEME-2 width = 8 sites = 10 llr = 108 E-value = 2.0e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif TAGCTCAG MEME-2 Description -------------------------------------------------------------------------------- Simplified A :9::::a: pos.-specific C :1:a:a:: probability G ::a::::a matrix T a:::a::: bits 2.1 ** * * 1.9 * ****** 1.7 * ****** 1.5 ******** Relative 1.3 ******** Entropy 1.1 ******** (15.6 bits) 0.9 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TAGCTCAG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAGCTCAG MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrII:12494681-12494761 67 1.50e-05 TCGGCCGCCA TAGCTCAG TCGGTT chrX:12563755-12563835 40 1.50e-05 TGTGCCCTTA TAGCTCAG TGGTAGAGCG chrIII:5305874-5305954 38 1.50e-05 GGCGCCCTTA TAGCTCAG TGGTAGAGCG chrIV:16399173-16399253 18 1.50e-05 TGCGGGGGTA TAGCTCAG TGGTAGAGCG chrII:5292314-5292394 25 1.50e-05 AGCGGGGGTA TAGCTCAG TGGTAGAGCG chrII:12678275-12678355 46 1.50e-05 TATGGGGGTA TAGCTCAG GGGTAGAGCG chrX:5713656-5713736 3 1.50e-05 CT TAGCTCAG TTGGTAGAGC chrV:6335399-6335479 6 1.50e-05 GGGTA TAGCTCAG TGGCAGAGCA chrII:4696179-4696259 29 1.50e-05 AAAACCGATT TAGCTCAG TTGTTGGTTT chrI:3849-3929 18 2.77e-05 GCCATCCTTC TCGCTCAG AGAATGGATT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAGCTCAG MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:12494681-12494761 1.5e-05 66_[+2]_6 chrX:12563755-12563835 1.5e-05 39_[+2]_33 chrIII:5305874-5305954 1.5e-05 37_[+2]_35 chrIV:16399173-16399253 1.5e-05 17_[+2]_55 chrII:5292314-5292394 1.5e-05 24_[+2]_48 chrII:12678275-12678355 1.5e-05 45_[+2]_27 chrX:5713656-5713736 1.5e-05 2_[+2]_70 chrV:6335399-6335479 1.5e-05 5_[+2]_67 chrII:4696179-4696259 1.5e-05 28_[+2]_44 chrI:3849-3929 2.8e-05 17_[+2]_55 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAGCTCAG MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TAGCTCAG width=8 seqs=10 chrII:12494681-12494761 ( 67) TAGCTCAG 1 chrX:12563755-12563835 ( 40) TAGCTCAG 1 chrIII:5305874-5305954 ( 38) TAGCTCAG 1 chrIV:16399173-16399253 ( 18) TAGCTCAG 1 chrII:5292314-5292394 ( 25) TAGCTCAG 1 chrII:12678275-12678355 ( 46) TAGCTCAG 1 chrX:5713656-5713736 ( 3) TAGCTCAG 1 chrV:6335399-6335479 ( 6) TAGCTCAG 1 chrII:4696179-4696259 ( 29) TAGCTCAG 1 chrI:3849-3929 ( 18) TCGCTCAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAGCTCAG MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.0846 E= 2.0e+001 -997 -997 -997 189 174 -119 -997 -997 -997 -997 210 -997 -997 213 -997 -997 -997 -997 -997 189 -997 213 -997 -997 189 -997 -997 -997 -997 -997 210 -997 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAGCTCAG MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 10 E= 2.0e+001 0.000000 0.000000 0.000000 1.000000 0.900000 0.100000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAGCTCAG MEME-2 regular expression -------------------------------------------------------------------------------- TAGCTCAG -------------------------------------------------------------------------------- Time 13.21 secs. ******************************************************************************** ******************************************************************************** MOTIF TTCAATTC MEME-3 width = 8 sites = 22 llr = 199 E-value = 4.1e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTCAATTC MEME-3 Description -------------------------------------------------------------------------------- Simplified A :3:9a::: pos.-specific C ::a::::7 probability G :::1:::: matrix T a7:::aa3 bits 2.1 1.9 * * *** 1.7 * * *** 1.5 * ***** Relative 1.3 * ***** Entropy 1.1 ******** (13.0 bits) 0.9 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TTCAATTC consensus A T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTCAATTC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrV:53520-53600 9 2.01e-05 gtcgttgg ttcaattc ttccaattgg chrIV:16399173-16399253 63 2.01e-05 AGGGCTGGGG TTCAATTC CCCATACCTC chrII:5292314-5292394 70 2.01e-05 AGGGCTGGGG TTCAATTC CCC chrIII:7278675-7278755 36 2.01e-05 GAAGACAACT TTCAATTC GGTCCGGAGT chrI:2869848-2869928 13 2.01e-05 AGATCGATAG TTCAATTC CAACAGTATC chrIV:16398427-16398507 9 2.01e-05 GGCTGGGG TTCAATTC CCCATACCTC chrX:6867886-6867966 41 2.01e-05 CACCCACTGG TTCAATTC CCTGTGTATG chrI:4645424-4645504 7 2.01e-05 CCCATT TTCAATTC ACAACAACCT chrV:9318250-9318330 33 2.01e-05 AAATCTATTT TTCAATTC TGGAAATTTT chrV:14354539-14354619 33 2.01e-05 GTGGAGAGCA TTCAATTC ACGATCAGAA chrII:1323557-1323637 48 4.03e-05 GACTATAAAC TACAATTC TGAAATGGCA chrV:10237981-10238061 18 4.03e-05 CTCGACCAAT TACAATTC CAACAGCCGA chrII:3439303-3439383 62 6.41e-05 ATTTGGTAGT TTCAATTT GTTACAAACT chrIII:3869610-3869690 59 6.41e-05 AGATAAAAAG TTCAATTT AAAGAGGGAG chrX:15297517-15297597 36 8.80e-05 CAAAATGTTT TACAATTT ATATAGATCG chrIV:3336733-3336813 32 8.80e-05 CGTCAGCGTT TACAATTT CGCAGGTGAA chrIII:8686011-8686091 41 8.80e-05 TGCAACGACC TACAATTT TGGAGGAAAA chrI:9100929-9101009 4 8.80e-05 TCT TACAATTT CTAGGCCACT chrII:7900235-7900315 12 8.80e-05 AGGGGAACGG TACAATTT AGAGAAAAAA chrIII:1424514-1424594 29 1.05e-04 TCGACGGGGG TTCGATTC CCCCCGAACG chrX:10963846-10963926 34 1.05e-04 TCGACGGGGG TTCGATTC CCCCCGAACG chrII:8464675-8464755 9 1.67e-04 ataatata ttAAATTC CAAAAAAAGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTCAATTC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:53520-53600 2e-05 8_[+3]_64 chrIV:16399173-16399253 2e-05 62_[+3]_10 chrII:5292314-5292394 2e-05 69_[+3]_3 chrIII:7278675-7278755 2e-05 35_[+3]_37 chrI:2869848-2869928 2e-05 12_[+3]_60 chrIV:16398427-16398507 2e-05 8_[+3]_64 chrX:6867886-6867966 2e-05 40_[+3]_32 chrI:4645424-4645504 2e-05 6_[+3]_66 chrV:9318250-9318330 2e-05 32_[+3]_40 chrV:14354539-14354619 2e-05 32_[+3]_40 chrII:1323557-1323637 4e-05 47_[+3]_25 chrV:10237981-10238061 4e-05 17_[+3]_55 chrII:3439303-3439383 6.4e-05 61_[+3]_11 chrIII:3869610-3869690 6.4e-05 58_[+3]_14 chrX:15297517-15297597 8.8e-05 35_[+3]_37 chrIV:3336733-3336813 8.8e-05 31_[+3]_41 chrIII:8686011-8686091 8.8e-05 40_[+3]_32 chrI:9100929-9101009 8.8e-05 3_[+3]_69 chrII:7900235-7900315 8.8e-05 11_[+3]_61 chrIII:1424514-1424594 0.00011 28_[+3]_44 chrX:10963846-10963926 0.00011 33_[+3]_39 chrII:8464675-8464755 0.00017 8_[+3]_64 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTCAATTC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTCAATTC width=8 seqs=22 chrV:53520-53600 ( 9) TTCAATTC 1 chrIV:16399173-16399253 ( 63) TTCAATTC 1 chrII:5292314-5292394 ( 70) TTCAATTC 1 chrIII:7278675-7278755 ( 36) TTCAATTC 1 chrI:2869848-2869928 ( 13) TTCAATTC 1 chrIV:16398427-16398507 ( 9) TTCAATTC 1 chrX:6867886-6867966 ( 41) TTCAATTC 1 chrI:4645424-4645504 ( 7) TTCAATTC 1 chrV:9318250-9318330 ( 33) TTCAATTC 1 chrV:14354539-14354619 ( 33) TTCAATTC 1 chrII:1323557-1323637 ( 48) TACAATTC 1 chrV:10237981-10238061 ( 18) TACAATTC 1 chrII:3439303-3439383 ( 62) TTCAATTT 1 chrIII:3869610-3869690 ( 59) TTCAATTT 1 chrX:15297517-15297597 ( 36) TACAATTT 1 chrIV:3336733-3336813 ( 32) TACAATTT 1 chrIII:8686011-8686091 ( 41) TACAATTT 1 chrI:9100929-9101009 ( 4) TACAATTT 1 chrII:7900235-7900315 ( 12) TACAATTT 1 chrIII:1424514-1424594 ( 29) TTCGATTC 1 chrX:10963846-10963926 ( 34) TTCGATTC 1 chrII:8464675-8464755 ( 9) TTAAATTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTCAATTC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.7218 E= 4.1e+001 -1110 -1110 -1110 189 24 -1110 -1110 134 -257 207 -1110 -1110 175 -1110 -135 -1110 189 -1110 -1110 -1110 -1110 -1110 -1110 189 -1110 -1110 -1110 189 -1110 158 -1110 24 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTCAATTC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 22 E= 4.1e+001 0.000000 0.000000 0.000000 1.000000 0.318182 0.000000 0.000000 0.681818 0.045455 0.954545 0.000000 0.000000 0.909091 0.000000 0.090909 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.681818 0.000000 0.318182 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTCAATTC MEME-3 regular expression -------------------------------------------------------------------------------- T[TA]CAATT[CT] -------------------------------------------------------------------------------- Time 16.95 secs. ******************************************************************************** ******************************************************************************** MOTIF TTTTCARA MEME-4 width = 8 sites = 18 llr = 171 E-value = 2.2e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTTTCARA MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::::74a pos.-specific C ::::a::: probability G :::::36: matrix T aaaa:::: bits 2.1 * 1.9 ***** * 1.7 ***** * 1.5 ***** * Relative 1.3 ***** * Entropy 1.1 ******** (13.7 bits) 0.9 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TTTTCAGA consensus GA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTCARA MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrII:6968321-6968401 45 2.06e-05 TCCTTCCCTA TTTTCAGA TTCACTAAAC chrX:15297517-15297597 59 2.06e-05 GATCGAGGGA TTTTCAGA ATAAAAATTT chrII:12345075-12345155 70 2.06e-05 GAAGTAAACA TTTTCAGA TCG chrIV:17281346-17281426 45 2.06e-05 TGGCAGCTTT TTTTCAGA ATCGGATATT chrIII:13603792-13603872 33 2.06e-05 TTTGACTCAT TTTTCAGA AAGGTGGTTT chrI:7492322-7492402 7 2.06e-05 AAAGAG TTTTCAGA CACTGAAAAC chrI:7602344-7602424 70 2.06e-05 TATTGATCGA TTTTCAGA GGT chrIV:14083742-14083822 40 2.06e-05 AACCCCAACA TTTTCAGA CTATTACGCC chrII:12494681-12494761 27 4.44e-05 TGTCCCCCTA TTTTCAAA ACCCTCCTTC chrX:1379571-1379651 17 4.44e-05 CTCTCACCAC TTTTCAAA ACATTTCTGC chrIII:1604672-1604752 16 4.44e-05 AAAATCGGAA TTTTCAAA AATATATTCC chrIII:11792799-11792879 69 4.44e-05 TGTTGGATTT TTTTCAAA AAAG chrV:7733161-7733241 65 4.44e-05 TCTTTTCCTT TTTTCAAA AACATCTG chrX:8638683-8638763 42 6.22e-05 TTGGGAAAAA TTTTCGGA ACTTTGTGTG chrIV:11026079-11026159 25 6.22e-05 GTAGACGGAC TTTTCGGA CAAGTGAGCA chrIV:1711246-1711326 45 8.28e-05 GAGCTGTTGT TTTTCGAA AAAGCTTTTT chrIII:1419974-1420054 19 8.28e-05 TCTTCAGTGC TTTTCGAA AGAGGTTGCA chrIII:5321790-5321870 65 8.28e-05 CTGGGCAAGC TTTTCGAA AGTCTTGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTCARA MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:6968321-6968401 2.1e-05 44_[+4]_28 chrX:15297517-15297597 2.1e-05 58_[+4]_14 chrII:12345075-12345155 2.1e-05 69_[+4]_3 chrIV:17281346-17281426 2.1e-05 44_[+4]_28 chrIII:13603792-13603872 2.1e-05 32_[+4]_40 chrI:7492322-7492402 2.1e-05 6_[+4]_66 chrI:7602344-7602424 2.1e-05 69_[+4]_3 chrIV:14083742-14083822 2.1e-05 39_[+4]_33 chrII:12494681-12494761 4.4e-05 26_[+4]_46 chrX:1379571-1379651 4.4e-05 16_[+4]_56 chrIII:1604672-1604752 4.4e-05 15_[+4]_57 chrIII:11792799-11792879 4.4e-05 68_[+4]_4 chrV:7733161-7733241 4.4e-05 64_[+4]_8 chrX:8638683-8638763 6.2e-05 41_[+4]_31 chrIV:11026079-11026159 6.2e-05 24_[+4]_48 chrIV:1711246-1711326 8.3e-05 44_[+4]_28 chrIII:1419974-1420054 8.3e-05 18_[+4]_54 chrIII:5321790-5321870 8.3e-05 64_[+4]_8 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTCARA MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTTTCARA width=8 seqs=18 chrII:6968321-6968401 ( 45) TTTTCAGA 1 chrX:15297517-15297597 ( 59) TTTTCAGA 1 chrII:12345075-12345155 ( 70) TTTTCAGA 1 chrIV:17281346-17281426 ( 45) TTTTCAGA 1 chrIII:13603792-13603872 ( 33) TTTTCAGA 1 chrI:7492322-7492402 ( 7) TTTTCAGA 1 chrI:7602344-7602424 ( 70) TTTTCAGA 1 chrIV:14083742-14083822 ( 40) TTTTCAGA 1 chrII:12494681-12494761 ( 27) TTTTCAAA 1 chrX:1379571-1379651 ( 17) TTTTCAAA 1 chrIII:1604672-1604752 ( 16) TTTTCAAA 1 chrIII:11792799-11792879 ( 69) TTTTCAAA 1 chrV:7733161-7733241 ( 65) TTTTCAAA 1 chrX:8638683-8638763 ( 42) TTTTCGGA 1 chrIV:11026079-11026159 ( 25) TTTTCGGA 1 chrIV:1711246-1711326 ( 45) TTTTCGAA 1 chrIII:1419974-1420054 ( 19) TTTTCGAA 1 chrIII:5321790-5321870 ( 65) TTTTCGAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTCARA MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.8329 E= 2.2e+001 -1081 -1081 -1081 189 -1081 -1081 -1081 189 -1081 -1081 -1081 189 -1081 -1081 -1081 189 -1081 213 -1081 -1081 142 -1081 26 -1081 72 -1081 126 -1081 189 -1081 -1081 -1081 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTCARA MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 18 E= 2.2e+001 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.722222 0.000000 0.277778 0.000000 0.444444 0.000000 0.555556 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTCARA MEME-4 regular expression -------------------------------------------------------------------------------- TTTTC[AG][GA]A -------------------------------------------------------------------------------- Time 20.61 secs. ******************************************************************************** ******************************************************************************** MOTIF GTWGAGCG MEME-5 width = 8 sites = 11 llr = 113 E-value = 1.3e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GTWGAGCG MEME-5 Description -------------------------------------------------------------------------------- Simplified A ::5:a::: pos.-specific C ::::::a: probability G a:2a:a:a matrix T :a3::::: bits 2.1 * * *** 1.9 ** ***** 1.7 ** ***** 1.5 ** ***** Relative 1.3 ** ***** Entropy 1.1 ** ***** (14.8 bits) 0.9 ** ***** 0.6 ** ***** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GTAGAGCG consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTWGAGCG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:12563755-12563835 50 1.32e-05 TAGCTCAGTG GTAGAGCG TTGGTCTTGT chrIII:5305874-5305954 48 1.32e-05 TAGCTCAGTG GTAGAGCG TTGGTCTTGT chrIV:16399173-16399253 28 1.32e-05 TAGCTCAGTG GTAGAGCG CTCCCTTAGC chrII:5292314-5292394 35 1.32e-05 TAGCTCAGTG GTAGAGCG CTCCCTTAGC chrII:12678275-12678355 56 1.32e-05 TAGCTCAGGG GTAGAGCG CTCGCTTTGC chrX:5713656-5713736 14 1.32e-05 AGCTCAGTTG GTAGAGCG TGAGACTTTT chrI:12039966-12040046 53 2.65e-05 CTCACTATGT GTTGAGCG ATGCGTACGC chrV:13649979-13650059 64 2.65e-05 CCTTTGAGTA GTTGAGCG GTGTTGCCT chrX:14791501-14791581 66 2.65e-05 AGAAGCGATT GTTGAGCG ATATTCC chrI:12966889-12966969 28 3.79e-05 TGATTGGTGG GTGGAGCG TGTTTGCTAT chrX:17420950-17421030 6 3.79e-05 GGTCT GTGGAGCG GTTCTTGAGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTWGAGCG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:12563755-12563835 1.3e-05 49_[+5]_23 chrIII:5305874-5305954 1.3e-05 47_[+5]_25 chrIV:16399173-16399253 1.3e-05 27_[+5]_45 chrII:5292314-5292394 1.3e-05 34_[+5]_38 chrII:12678275-12678355 1.3e-05 55_[+5]_17 chrX:5713656-5713736 1.3e-05 13_[+5]_59 chrI:12039966-12040046 2.6e-05 52_[+5]_20 chrV:13649979-13650059 2.6e-05 63_[+5]_9 chrX:14791501-14791581 2.6e-05 65_[+5]_7 chrI:12966889-12966969 3.8e-05 27_[+5]_45 chrX:17420950-17421030 3.8e-05 5_[+5]_67 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTWGAGCG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GTWGAGCG width=8 seqs=11 chrX:12563755-12563835 ( 50) GTAGAGCG 1 chrIII:5305874-5305954 ( 48) GTAGAGCG 1 chrIV:16399173-16399253 ( 28) GTAGAGCG 1 chrII:5292314-5292394 ( 35) GTAGAGCG 1 chrII:12678275-12678355 ( 56) GTAGAGCG 1 chrX:5713656-5713736 ( 14) GTAGAGCG 1 chrI:12039966-12040046 ( 53) GTTGAGCG 1 chrV:13649979-13650059 ( 64) GTTGAGCG 1 chrX:14791501-14791581 ( 66) GTTGAGCG 1 chrI:12966889-12966969 ( 28) GTGGAGCG 1 chrX:17420950-17421030 ( 6) GTGGAGCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTWGAGCG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.2475 E= 1.3e+003 -1010 -1010 210 -1010 -1010 -1010 -1010 189 102 -1010 -36 1 -1010 -1010 210 -1010 189 -1010 -1010 -1010 -1010 -1010 210 -1010 -1010 213 -1010 -1010 -1010 -1010 210 -1010 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTWGAGCG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 11 E= 1.3e+003 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.545455 0.000000 0.181818 0.272727 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTWGAGCG MEME-5 regular expression -------------------------------------------------------------------------------- GT[AT]GAGCG -------------------------------------------------------------------------------- Time 24.23 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:5544948-5545028 2.97e-01 80 chrII:7900235-7900315 1.48e-01 11_[+3(8.80e-05)]_61 chrV:10023445-10023525 7.39e-01 80 chrIII:3502348-3502428 6.80e-01 80 chrX:16944712-16944792 4.00e-01 80 chrIV:8979348-8979428 8.00e-01 80 chrV:18640148-18640228 9.56e-01 80 chrIII:10296053-10296133 5.51e-01 80 chrV:10237981-10238061 1.53e-01 17_[+3(4.03e-05)]_55 chrV:11888894-11888974 4.19e-01 80 chrIV:6326002-6326082 1.34e-01 80 chrIV:14796091-14796171 8.06e-02 80 chrII:4696179-4696259 2.96e-02 28_[+2(1.50e-05)]_44 chrIV:11024372-11024452 7.96e-01 80 chrX:14791501-14791581 8.16e-02 65_[+5(2.65e-05)]_7 chrIV:11146225-11146305 3.18e-01 80 chrIV:4706161-4706241 5.37e-01 80 chrIV:7962141-7962221 3.25e-01 80 chrII:7866293-7866373 1.26e-01 80 chrI:4913311-4913391 2.38e-01 80 chrI:14758949-14759029 4.06e-01 80 chrIII:8981717-8981797 4.58e-01 80 chrIV:3297026-3297106 3.55e-01 80 chrV:9343254-9343334 6.01e-01 80 chrI:3564729-3564809 2.00e-01 80 chrV:6335399-6335479 1.93e-03 5_[+2(1.50e-05)]_67 chrI:13953352-13953432 3.53e-01 80 chrII:4702898-4702978 2.95e-01 80 chrV:5284347-5284427 8.37e-01 80 chrIII:7495021-7495101 8.10e-01 80 chrI:5103396-5103476 3.77e-01 80 chrIV:8377598-8377678 3.23e-01 80 chrIII:9509974-9510054 8.43e-02 80 chrII:8441661-8441741 4.38e-01 80 chrII:8464675-8464755 2.71e-01 80 chrX:1452014-1452094 2.11e-01 80 chrI:9624533-9624613 7.06e-01 80 chrV:14354539-14354619 2.03e-02 32_[+3(2.01e-05)]_40 chrI:9100929-9101009 1.21e-01 3_[+3(8.80e-05)]_69 chrIII:8686011-8686091 1.68e-01 40_[+3(8.80e-05)]_32 chrV:7733161-7733241 1.74e-01 64_[+4(4.44e-05)]_8 chrV:14353201-14353281 7.27e-01 80 chrII:11880650-11880730 1.17e-01 80 chrIII:11091222-11091302 6.90e-01 80 chrV:4516678-4516758 8.41e-01 80 chrIII:3869610-3869690 7.40e-02 58_[+3(6.41e-05)]_14 chrI:12654792-12654872 5.82e-01 80 chrIV:14083742-14083822 6.88e-02 39_[+4(2.06e-05)]_33 chrIII:10812975-10813055 1.87e-01 80 chrIV:396796-396876 1.69e-01 80 chrIV:3032221-3032301 2.68e-01 80 chrII:6587372-6587452 3.78e-01 80 chrX:11163316-11163396 9.82e-03 56_[+1(1.24e-05)]_16 chrX:14290082-14290162 8.68e-01 80 chrX:1010830-1010910 3.48e-01 80 chrV:4688676-4688756 9.92e-01 80 chrX:17420950-17421030 8.56e-02 5_[+5(3.79e-05)]_67 chrIII:11830605-11830685 2.07e-01 80 chrIII:4491518-4491598 1.34e-01 80 chrI:8135853-8135933 8.02e-01 80 chrIII:7731794-7731874 7.15e-01 80 chrIV:10492468-10492548 1.23e-01 80 chrI:2878579-2878659 9.11e-01 80 chrIV:13300917-13300997 6.37e-01 80 chrIII:2811548-2811628 5.45e-01 80 chrIV:3336733-3336813 5.18e-02 31_[+3(8.80e-05)]_41 chrI:7602344-7602424 2.61e-02 69_[+4(2.06e-05)]_3 chrIII:12685940-12686020 1.61e-02 80 chrIII:12598990-12599070 2.00e-01 80 chrII:12766747-12766827 5.09e-02 80 chrIII:4018977-4019057 7.76e-01 80 chrIII:5230568-5230648 6.44e-01 80 chrV:103050-103130 5.27e-01 80 chrI:7492322-7492402 1.93e-01 6_[+4(2.06e-05)]_66 chrV:10021676-10021756 1.00e+00 80 chrI:14718868-14718948 7.06e-01 80 chrIII:8639300-8639380 8.88e-01 80 chrV:1158351-1158431 2.92e-01 80 chrX:14808845-14808925 2.95e-01 80 chrIV:13036261-13036341 6.78e-01 80 chrIII:4018215-4018295 9.65e-01 80 chrI:378768-378848 7.22e-01 80 chrIII:5321790-5321870 2.23e-01 64_[+4(8.28e-05)]_8 chrII:5353778-5353858 9.71e-01 80 chrIII:12499442-12499522 1.89e-01 80 chrIII:10740621-10740701 2.37e-01 80 chrIII:13603792-13603872 9.06e-02 32_[+4(2.06e-05)]_40 chrIII:1419974-1420054 4.13e-02 18_[+4(8.28e-05)]_54 chrV:11538292-11538372 5.69e-01 80 chrII:1323557-1323637 3.14e-02 47_[+3(4.03e-05)]_25 chrIV:7506194-7506274 7.05e-01 80 chrI:7083717-7083797 9.87e-01 80 chrII:12242684-12242764 7.05e-01 80 chrII:8141251-8141331 4.92e-01 80 chrIV:1711246-1711326 1.19e-01 44_[+4(8.28e-05)]_28 chrI:4911577-4911657 8.32e-01 80 chrX:15200932-15201012 6.64e-01 80 chrI:6219759-6219839 9.83e-01 80 chrIII:11185867-11185947 9.41e-01 80 chrI:7079285-7079365 7.17e-01 80 chrV:13649979-13650059 8.54e-02 63_[+5(2.65e-05)]_9 chrIII:11792799-11792879 9.25e-03 68_[+4(4.44e-05)]_4 chrI:14058692-14058772 6.24e-01 80 chrIII:13464684-13464764 6.39e-01 80 chrIV:17281346-17281426 1.16e-01 44_[+4(2.06e-05)]_28 chrV:9318250-9318330 3.32e-02 3_[+3(2.01e-05)]_21_[+3(2.01e-05)]_\ 40 chrII:12345075-12345155 1.40e-02 69_[+4(2.06e-05)]_3 chrI:9057800-9057880 7.53e-01 80 chrV:1154917-1154997 7.20e-01 80 chrI:7656707-7656787 5.34e-01 80 chrX:2531409-2531489 2.91e-02 6_[+1(2.29e-05)]_66 chrIII:10506044-10506124 1.77e-01 80 chrIV:5473530-5473610 1.79e-01 80 chrX:14478839-14478919 6.47e-02 52_[+1(1.24e-05)]_20 chrI:5372745-5372825 7.31e-01 80 chrX:15668249-15668329 5.91e-01 80 chrI:461711-461791 9.21e-01 80 chrII:3439303-3439383 7.87e-02 61_[+3(6.41e-05)]_11 chrIII:5940722-5940802 4.13e-01 80 chrIV:17089094-17089174 3.95e-01 80 chrI:10085828-10085908 3.29e-01 80 chrI:3826648-3826728 8.88e-02 80 chrI:4645424-4645504 1.73e-02 6_[+3(2.01e-05)]_66 chrIV:11377698-11377778 9.09e-01 80 chrV:9786910-9786990 4.25e-01 80 chrI:4177484-4177564 8.94e-01 80 chrX:6867886-6867966 3.63e-02 40_[+3(2.01e-05)]_32 chrIII:835986-836066 7.47e-01 80 chrV:7432753-7432833 5.71e-01 80 chrII:10542906-10542986 9.51e-01 80 chrIV:4748600-4748680 8.05e-01 80 chrIII:7977606-7977686 3.26e-01 80 chrII:14018219-14018299 1.69e-01 80 chrIV:9477700-9477780 9.43e-01 80 chrII:8747445-8747525 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******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n11.farnam.hpc.yale.internal ********************************************************************************