******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/worm/fasta/RankLinear2.0_40/nhr-25.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrIII:12424822-12424902 1.0000 80 chrIII:10908751-10908831 1.0000 80 chrIV:10978831-10978911 1.0000 80 chrI:5810890-5810970 1.0000 80 chrIII:10904431-10904511 1.0000 80 chrIV:7179094-7179174 1.0000 80 chrI:5808442-5808522 1.0000 80 chrI:5813741-5813821 1.0000 80 chrII:9170305-9170385 1.0000 80 chrV:9164041-9164121 1.0000 80 chrIV:5563445-5563525 1.0000 80 chrX:10189401-10189481 1.0000 80 chrII:7404300-7404380 1.0000 80 chrII:10893667-10893747 1.0000 80 chrIV:10617246-10617326 1.0000 80 chrV:8990338-8990418 1.0000 80 chrIII:10907827-10907907 1.0000 80 chrX:13009093-13009173 1.0000 80 chrIII:12427691-12427771 1.0000 80 chrV:11181158-11181238 1.0000 80 chrX:12999731-12999811 1.0000 80 chrI:5812417-5812497 1.0000 80 chrX:9586562-9586642 1.0000 80 chrX:13014503-13014583 1.0000 80 chrX:5803637-5803717 1.0000 80 chrI:935755-935835 1.0000 80 chrIII:3812530-3812610 1.0000 80 chrX:15273063-15273143 1.0000 80 chrX:2588146-2588226 1.0000 80 chrIV:1549837-1549917 1.0000 80 chrII:12628724-12628804 1.0000 80 chrV:14998898-14998978 1.0000 80 chrX:15380061-15380141 1.0000 80 chrV:13200798-13200878 1.0000 80 chrI:7227789-7227869 1.0000 80 chrII:8420910-8420990 1.0000 80 chrV:12993089-12993169 1.0000 80 chrIII:3161812-3161892 1.0000 80 chrIII:12014691-12014771 1.0000 80 chrIII:11624955-11625035 1.0000 80 chrV:11857892-11857972 1.0000 80 chrIV:5216464-5216544 1.0000 80 chrII:8419188-8419268 1.0000 80 chrX:5075680-5075760 1.0000 80 chrIII:9927593-9927673 1.0000 80 chrIV:7311242-7311322 1.0000 80 chrII:4759988-4760068 1.0000 80 chrIV:13083434-13083514 1.0000 80 chrI:13062756-13062836 1.0000 80 chrV:15651920-15652000 1.0000 80 chrX:9111757-9111837 1.0000 80 chrI:14905316-14905396 1.0000 80 chrIV:1715892-1715972 1.0000 80 chrII:8099393-8099473 1.0000 80 chrI:936626-936706 1.0000 80 chrX:10302073-10302153 1.0000 80 chrV:12410543-12410623 1.0000 80 chrV:11794449-11794529 1.0000 80 chrX:3250846-3250926 1.0000 80 chrIII:3811570-3811650 1.0000 80 chrII:11015477-11015557 1.0000 80 chrII:1088702-1088782 1.0000 80 chrV:10423658-10423738 1.0000 80 chrX:8010768-8010848 1.0000 80 chrV:13412038-13412118 1.0000 80 chrI:8049579-8049659 1.0000 80 chrII:10706209-10706289 1.0000 80 chrV:11147200-11147280 1.0000 80 chrI:8986695-8986775 1.0000 80 chrI:5034431-5034511 1.0000 80 chrII:9555049-9555129 1.0000 80 chrX:15161062-15161142 1.0000 80 chrV:19526327-19526407 1.0000 80 chrX:11462287-11462367 1.0000 80 chrI:9330909-9330989 1.0000 80 chrII:10011074-10011154 1.0000 80 chrV:18569599-18569679 1.0000 80 chrIII:7900637-7900717 1.0000 80 chrV:13704087-13704167 1.0000 80 chrIII:352207-352287 1.0000 80 chrV:20422903-20422983 1.0000 80 chrV:11182956-11183036 1.0000 80 chrIV:7309899-7309979 1.0000 80 chrX:13009785-13009865 1.0000 80 chrII:11205956-11206036 1.0000 80 chrIII:7201560-7201640 1.0000 80 chrI:3277989-3278069 1.0000 80 chrX:13005912-13005992 1.0000 80 chrV:11617257-11617337 1.0000 80 chrX:11420130-11420210 1.0000 80 chrI:5809463-5809543 1.0000 80 chrX:13004602-13004682 1.0000 80 chrX:13781267-13781347 1.0000 80 chrX:16555906-16555986 1.0000 80 chrV:8025356-8025436 1.0000 80 chrI:3281788-3281868 1.0000 80 chrIII:4614617-4614697 1.0000 80 chrX:5659753-5659833 1.0000 80 chrIV:8043042-8043122 1.0000 80 chrI:6998617-6998697 1.0000 80 chrI:13034873-13034953 1.0000 80 chrIII:6602158-6602238 1.0000 80 chrIII:6799069-6799149 1.0000 80 chrV:11543673-11543753 1.0000 80 chrX:13008334-13008414 1.0000 80 chrX:10630210-10630290 1.0000 80 chrV:8449363-8449443 1.0000 80 chrX:4386651-4386731 1.0000 80 chrIV:17474218-17474298 1.0000 80 chrIII:11559843-11559923 1.0000 80 chrIII:4505113-4505193 1.0000 80 chrX:9246797-9246877 1.0000 80 chrII:11307511-11307591 1.0000 80 chrI:6733478-6733558 1.0000 80 chrX:6281203-6281283 1.0000 80 chrV:7686402-7686482 1.0000 80 chrI:5812975-5813055 1.0000 80 chrIII:3367935-3368015 1.0000 80 chrIV:12429719-12429799 1.0000 80 chrX:2858518-2858598 1.0000 80 chrII:60239-60319 1.0000 80 chrII:6821348-6821428 1.0000 80 chrI:7316937-7317017 1.0000 80 chrV:13464294-13464374 1.0000 80 chrI:10514016-10514096 1.0000 80 chrII:4548603-4548683 1.0000 80 chrII:9251661-9251741 1.0000 80 chrX:5810858-5810938 1.0000 80 chrII:5021666-5021746 1.0000 80 chrIII:8923526-8923606 1.0000 80 chrX:10691440-10691520 1.0000 80 chrX:4102363-4102443 1.0000 80 chrII:178343-178423 1.0000 80 chrV:17905868-17905948 1.0000 80 chrII:5880834-5880914 1.0000 80 chrIII:12018737-12018817 1.0000 80 chrX:12844305-12844385 1.0000 80 chrIV:10984169-10984249 1.0000 80 chrIII:12015792-12015872 1.0000 80 chrI:6997112-6997192 1.0000 80 chrII:4151848-4151928 1.0000 80 chrX:2857600-2857680 1.0000 80 chrII:7807002-7807082 1.0000 80 chrI:7883884-7883964 1.0000 80 chrII:15204630-15204710 1.0000 80 chrIV:13079213-13079293 1.0000 80 chrX:12511525-12511605 1.0000 80 chrX:6323302-6323382 1.0000 80 chrV:13392079-13392159 1.0000 80 chrIII:11255215-11255295 1.0000 80 chrIII:11262212-11262292 1.0000 80 chrII:6878030-6878110 1.0000 80 chrV:11094816-11094896 1.0000 80 chrI:1693254-1693334 1.0000 80 chrIII:8577696-8577776 1.0000 80 chrX:9029078-9029158 1.0000 80 chrV:15652124-15652204 1.0000 80 chrIII:3809173-3809253 1.0000 80 chrII:12239613-12239693 1.0000 80 chrI:524579-524659 1.0000 80 chrX:6277408-6277488 1.0000 80 chrIV:14675920-14676000 1.0000 80 chrV:11508888-11508968 1.0000 80 chrV:15661197-15661277 1.0000 80 chrV:13790700-13790780 1.0000 80 chrX:16998171-16998251 1.0000 80 chrIV:6905978-6906058 1.0000 80 chrII:15203527-15203607 1.0000 80 chrV:11527257-11527337 1.0000 80 chrV:11193355-11193435 1.0000 80 chrX:5339515-5339595 1.0000 80 chrI:1300112-1300192 1.0000 80 chrIV:5752712-5752792 1.0000 80 chrII:7808278-7808358 1.0000 80 chrI:12503083-12503163 1.0000 80 chrIV:6492049-6492129 1.0000 80 chrX:9549804-9549884 1.0000 80 chrII:4392768-4392848 1.0000 80 chrX:9585788-9585868 1.0000 80 chrIV:10816132-10816212 1.0000 80 chrII:12262729-12262809 1.0000 80 chrV:8668353-8668433 1.0000 80 chrII:4921680-4921760 1.0000 80 chrV:11797578-11797658 1.0000 80 chrI:10403880-10403960 1.0000 80 chrV:11616080-11616160 1.0000 80 chrII:8226082-8226162 1.0000 80 chrII:5049462-5049542 1.0000 80 chrIII:4331072-4331152 1.0000 80 chrX:6663790-6663870 1.0000 80 chrII:6345914-6345994 1.0000 80 chrI:3752203-3752283 1.0000 80 chrIII:7152775-7152855 1.0000 80 chrII:7413430-7413510 1.0000 80 chrX:13325124-13325204 1.0000 80 chrX:6278451-6278531 1.0000 80 chrV:20693086-20693166 1.0000 80 chrIV:1547324-1547404 1.0000 80 chrV:9631968-9632048 1.0000 80 chrX:9403793-9403873 1.0000 80 chrI:10691975-10692055 1.0000 80 chrV:6736265-6736345 1.0000 80 chrX:6324628-6324708 1.0000 80 chrX:15283931-15284011 1.0000 80 chrV:5813404-5813484 1.0000 80 chrX:8585965-8586045 1.0000 80 chrII:11202784-11202864 1.0000 80 chrX:17638604-17638684 1.0000 80 chrV:13197978-13198058 1.0000 80 chrII:12961469-12961549 1.0000 80 chrII:8819661-8819741 1.0000 80 chrV:14151143-14151223 1.0000 80 chrX:16322002-16322082 1.0000 80 chrV:4918752-4918832 1.0000 80 chrI:5809855-5809935 1.0000 80 chrII:10887238-10887318 1.0000 80 chrX:7330847-7330927 1.0000 80 chrI:10281883-10281963 1.0000 80 chrX:14690348-14690428 1.0000 80 chrX:8882321-8882401 1.0000 80 chrX:2707303-2707383 1.0000 80 chrII:6344067-6344147 1.0000 80 chrX:12168710-12168790 1.0000 80 chrIII:5453614-5453694 1.0000 80 chrX:5518015-5518095 1.0000 80 chrX:14009115-14009195 1.0000 80 chrX:8584952-8585032 1.0000 80 chrX:433166-433246 1.0000 80 chrV:11070484-11070564 1.0000 80 chrII:11020893-11020973 1.0000 80 chrX:13315259-13315339 1.0000 80 chrII:9987303-9987383 1.0000 80 chrIV:1371495-1371575 1.0000 80 chrX:5828264-5828344 1.0000 80 chrX:12080972-12081052 1.0000 80 chrI:3530961-3531041 1.0000 80 chrIII:13534841-13534921 1.0000 80 chrI:14906289-14906369 1.0000 80 chrV:13376020-13376100 1.0000 80 chrIV:17442677-17442757 1.0000 80 chrI:3724753-3724833 1.0000 80 chrIII:8621101-8621181 1.0000 80 chrX:12940980-12941060 1.0000 80 chrIII:12009982-12010062 1.0000 80 chrX:10304362-10304442 1.0000 80 chrV:8079978-8080058 1.0000 80 chrX:10769502-10769582 1.0000 80 chrX:14500431-14500511 1.0000 80 chrIV:3439511-3439591 1.0000 80 chrIV:17472213-17472293 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/worm/inference_raw/MEME/RankLinear2.0_40_nhr-25/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/worm/fasta/RankLinear2.0_40/nhr-25.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.307 C 0.192 G 0.192 T 0.308 Background letter frequencies (from file dataset with add-one prior applied): A 0.307 C 0.192 G 0.192 T 0.308 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF TGACCTTS MEME-1 width = 8 sites = 51 llr = 420 E-value = 5.9e-016 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGACCTTS MEME-1 Description -------------------------------------------------------------------------------- Simplified A :19:1::: pos.-specific C 2::a9123 probability G :9:::::5 matrix T 8:1::981 bits 2.4 * 2.1 * 1.9 * ** 1.7 * ** Relative 1.4 * ** Entropy 1.2 ******* (11.9 bits) 1.0 ******* 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TGACCTTG consensus C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGACCTTS MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIII:5453614-5453694 54 1.22e-05 CAGGCGTATT TGACCTTG CAGAGTACCG chrV:11508888-11508968 32 1.22e-05 ATTTTCTAGA TGACCTTG AGCAGATTCT chrI:1693254-1693334 36 1.22e-05 CCTAGTTGTG TGACCTTG CCCGTCGCAA chrII:5021666-5021746 60 1.22e-05 TCCAACTTCA TGACCTTG ACACTTCAGT chrII:6821348-6821428 16 1.22e-05 TGTTGATTTA TGACCTTG ATGGTACTTG chrII:8099393-8099473 12 1.22e-05 TCTCTACAGC TGACCTTG ATGAGAGACT chrV:13200798-13200878 67 1.22e-05 TGGATCTTGA TGACCTTG AATGAA chrX:5518015-5518095 17 2.44e-05 ATTGAAAATT TGACCTTC TTGCCGTTTT chrV:6736265-6736345 16 2.44e-05 ATTTGGAATT TGACCTTC GTTCATGCTT chrII:15203527-15203607 34 2.44e-05 GCCTACCATA TGACCTTC TTTGTCACCT chrII:4548603-4548683 39 2.44e-05 TAGATTCTTC TGACCTTC AATATTTTAA chrI:7316937-7317017 48 2.44e-05 ATCATTGGTT TGACCTTC TCAGTGACCG chrIII:6602158-6602238 66 2.44e-05 GTACATCTAA TGACCTTC AAATTCG chrIV:3439511-3439591 4 3.20e-05 TCT TGACCTCG GCACCAAGGC chrV:11070484-11070564 36 3.20e-05 GAGAGGTAGT TGACCTCG AAAATAGGCA chrX:9549804-9549884 61 3.20e-05 GCCAGGTGGT TGACCTCG TAAACAagaa chrI:6733478-6733558 50 3.20e-05 TTCATTTGAA TGACCTCG ATATGAGAGT chrIII:10907827-10907907 14 3.20e-05 TCCAAATCCG TGACCTCG ACACGGAACA chrIV:10978831-10978911 50 3.20e-05 TGTGGCTGAT TGACCTCG AAAAAAGGGG chrX:6277408-6277488 49 3.96e-05 CGGGCACTGC CGACCTTG GAGGAGGCAG chrX:12080972-12081052 64 5.48e-05 GTCATTATCA TGACCTCC ACGCAACCT chrIII:3809173-3809253 1 5.48e-05 . TGACCCTG TCTCGAGAAT chrX:2858518-2858598 53 5.48e-05 ATGTTTCGAA TGACCCTG TCATCGTTGG chrX:15161062-15161142 64 5.48e-05 CATTAAGAAA TGACCCTG CTGCCAGTT chrIV:7311242-7311322 33 5.48e-05 TTTGCCATTT TGACCCTG ACATCTTTTG chrII:9987303-9987383 73 6.24e-05 CAATTAGTGA CGACCTTC chrII:12262729-12262809 61 6.24e-05 TCGACCAGAT CGACCTTC AGGCGGTGGC chrV:20422903-20422983 8 6.24e-05 GAAAATC CGACCTTC AGCCGGCTAA chrX:15283931-15284011 50 7.46e-05 GCTTCTTCAG TGTCCTTG ATACTGTGAT chrX:15380061-15380141 71 7.46e-05 TTAAACTTGA TGTCCTTG AA chrIV:7179094-7179174 70 7.46e-05 ATGCCCATTA TGTCCTTG TAA chrV:15661197-15661277 42 1.02e-04 GGAGAGGTCG TGACCTTT GTGTGAACCG chrI:10514016-10514096 25 1.02e-04 GTTTATTTGA TGACCTTT ATCTCTGATT chrX:10630210-10630290 21 1.02e-04 GTGAGTCACC TGACCTTT TTATGATGTC chrX:15273063-15273143 57 1.02e-04 TCACTTTTCA TGACCTTT TGCCAAGCCA chrII:12239613-12239693 5 1.06e-04 GGTA CGACCTCG ACCGTTGGCT chrX:12940980-12941060 57 1.19e-04 AAAAGCCTTA TGTCCTTC AACTAGTAGT chrI:14906289-14906369 66 1.19e-04 TGAAATCGGT TGTCCTTC TTCTGCA chrIII:3812530-3812610 43 1.19e-04 TGCGTGTGTG TGTCCTTC AAAAACCCTT chrX:2707303-2707383 42 1.72e-04 GCCTTTTATT TGACCTTA ACAAAAAAGT chrII:4921680-4921760 41 1.72e-04 TGACAAATGT TGACCTTA AAGAACACTT chrV:13464294-13464374 26 1.72e-04 GAACTTTTGA CGTCCTTG AATATCTCGA chrV:13704087-13704167 25 1.72e-04 TGCCTTCAGT TGACCCCC TCAAGGTCGG chrX:8585965-8586045 57 2.24e-04 CTATATCACT TGACATTG AACGTATTTT chrX:9403793-9403873 17 2.24e-04 TCAACACCAT TGACATTG CATTCGTAAT chrX:16998171-16998251 30 2.24e-04 CATCGTGATT TGACATTG ATGCATTTTT chrIII:12015792-12015872 73 2.24e-04 GGAAAAAAAC TAACCTTG chrIII:12018737-12018817 18 2.24e-04 AGACAAAACC TAACCTTG AACCCCCAAA chrX:10304362-10304442 55 2.28e-04 ATTTCTCCGC CGACCCTC GCATGCACCC chrIII:4505113-4505193 55 2.56e-04 TCGCCCCTGA CGACCTTT TCAGCAACCG chrX:10189401-10189481 10 3.15e-04 GTTTCTCTA TAACCTTC AACTTCCGCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGACCTTS MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:5453614-5453694 1.2e-05 53_[+1]_19 chrV:11508888-11508968 1.2e-05 31_[+1]_41 chrI:1693254-1693334 1.2e-05 35_[+1]_37 chrII:5021666-5021746 1.2e-05 59_[+1]_13 chrII:6821348-6821428 1.2e-05 15_[+1]_57 chrII:8099393-8099473 1.2e-05 11_[+1]_61 chrV:13200798-13200878 1.2e-05 66_[+1]_6 chrX:5518015-5518095 2.4e-05 16_[+1]_56 chrV:6736265-6736345 2.4e-05 15_[+1]_57 chrII:15203527-15203607 2.4e-05 33_[+1]_39 chrII:4548603-4548683 2.4e-05 38_[+1]_34 chrI:7316937-7317017 2.4e-05 47_[+1]_25 chrIII:6602158-6602238 2.4e-05 65_[+1]_7 chrIV:3439511-3439591 3.2e-05 3_[+1]_69 chrV:11070484-11070564 3.2e-05 35_[+1]_37 chrX:9549804-9549884 3.2e-05 60_[+1]_12 chrI:6733478-6733558 3.2e-05 49_[+1]_23 chrIII:10907827-10907907 3.2e-05 13_[+1]_59 chrIV:10978831-10978911 3.2e-05 49_[+1]_23 chrX:6277408-6277488 4e-05 48_[+1]_24 chrX:12080972-12081052 5.5e-05 63_[+1]_9 chrIII:3809173-3809253 5.5e-05 [+1]_72 chrX:2858518-2858598 5.5e-05 52_[+1]_20 chrX:15161062-15161142 5.5e-05 63_[+1]_9 chrIV:7311242-7311322 5.5e-05 32_[+1]_40 chrII:9987303-9987383 6.2e-05 72_[+1] chrII:12262729-12262809 6.2e-05 60_[+1]_12 chrV:20422903-20422983 6.2e-05 7_[+1]_65 chrX:15283931-15284011 7.5e-05 49_[+1]_23 chrX:15380061-15380141 7.5e-05 70_[+1]_2 chrIV:7179094-7179174 7.5e-05 69_[+1]_3 chrV:15661197-15661277 0.0001 41_[+1]_31 chrI:10514016-10514096 0.0001 24_[+1]_48 chrX:10630210-10630290 0.0001 20_[+1]_52 chrX:15273063-15273143 0.0001 56_[+1]_16 chrII:12239613-12239693 0.00011 4_[+1]_68 chrX:12940980-12941060 0.00012 56_[+1]_16 chrI:14906289-14906369 0.00012 65_[+1]_7 chrIII:3812530-3812610 0.00012 42_[+1]_30 chrX:2707303-2707383 0.00017 41_[+1]_31 chrII:4921680-4921760 0.00017 40_[+1]_32 chrV:13464294-13464374 0.00017 25_[+1]_47 chrV:13704087-13704167 0.00017 24_[+1]_48 chrX:8585965-8586045 0.00022 56_[+1]_16 chrX:9403793-9403873 0.00022 16_[+1]_56 chrX:16998171-16998251 0.00022 29_[+1]_43 chrIII:12015792-12015872 0.00022 72_[+1] chrIII:12018737-12018817 0.00022 17_[+1]_55 chrX:10304362-10304442 0.00023 54_[+1]_18 chrIII:4505113-4505193 0.00026 54_[+1]_18 chrX:10189401-10189481 0.00031 9_[+1]_63 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGACCTTS MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGACCTTS width=8 seqs=51 chrIII:5453614-5453694 ( 54) TGACCTTG 1 chrV:11508888-11508968 ( 32) TGACCTTG 1 chrI:1693254-1693334 ( 36) TGACCTTG 1 chrII:5021666-5021746 ( 60) TGACCTTG 1 chrII:6821348-6821428 ( 16) TGACCTTG 1 chrII:8099393-8099473 ( 12) TGACCTTG 1 chrV:13200798-13200878 ( 67) TGACCTTG 1 chrX:5518015-5518095 ( 17) TGACCTTC 1 chrV:6736265-6736345 ( 16) TGACCTTC 1 chrII:15203527-15203607 ( 34) TGACCTTC 1 chrII:4548603-4548683 ( 39) TGACCTTC 1 chrI:7316937-7317017 ( 48) TGACCTTC 1 chrIII:6602158-6602238 ( 66) TGACCTTC 1 chrIV:3439511-3439591 ( 4) TGACCTCG 1 chrV:11070484-11070564 ( 36) TGACCTCG 1 chrX:9549804-9549884 ( 61) TGACCTCG 1 chrI:6733478-6733558 ( 50) TGACCTCG 1 chrIII:10907827-10907907 ( 14) TGACCTCG 1 chrIV:10978831-10978911 ( 50) TGACCTCG 1 chrX:6277408-6277488 ( 49) CGACCTTG 1 chrX:12080972-12081052 ( 64) TGACCTCC 1 chrIII:3809173-3809253 ( 1) TGACCCTG 1 chrX:2858518-2858598 ( 53) TGACCCTG 1 chrX:15161062-15161142 ( 64) TGACCCTG 1 chrIV:7311242-7311322 ( 33) TGACCCTG 1 chrII:9987303-9987383 ( 73) CGACCTTC 1 chrII:12262729-12262809 ( 61) CGACCTTC 1 chrV:20422903-20422983 ( 8) CGACCTTC 1 chrX:15283931-15284011 ( 50) TGTCCTTG 1 chrX:15380061-15380141 ( 71) TGTCCTTG 1 chrIV:7179094-7179174 ( 70) TGTCCTTG 1 chrV:15661197-15661277 ( 42) TGACCTTT 1 chrI:10514016-10514096 ( 25) TGACCTTT 1 chrX:10630210-10630290 ( 21) TGACCTTT 1 chrX:15273063-15273143 ( 57) TGACCTTT 1 chrII:12239613-12239693 ( 5) CGACCTCG 1 chrX:12940980-12941060 ( 57) TGTCCTTC 1 chrI:14906289-14906369 ( 66) TGTCCTTC 1 chrIII:3812530-3812610 ( 43) TGTCCTTC 1 chrX:2707303-2707383 ( 42) TGACCTTA 1 chrII:4921680-4921760 ( 41) TGACCTTA 1 chrV:13464294-13464374 ( 26) CGTCCTTG 1 chrV:13704087-13704167 ( 25) TGACCCCC 1 chrX:8585965-8586045 ( 57) TGACATTG 1 chrX:9403793-9403873 ( 17) TGACATTG 1 chrX:16998171-16998251 ( 30) TGACATTG 1 chrIII:12015792-12015872 ( 73) TAACCTTG 1 chrIII:12018737-12018817 ( 18) TAACCTTG 1 chrX:10304362-10304442 ( 55) CGACCCTC 1 chrIII:4505113-4505193 ( 55) CGACCTTT 1 chrX:10189401-10189481 ( 10) TAACCTTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGACCTTS MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.63023 E= 5.9e-016 -1232 -30 -1232 145 -238 -1232 229 -1232 149 -1232 -1232 -117 -1232 238 -1232 -1232 -238 229 -1232 -1232 -1232 -71 -1232 152 -1232 -13 -1232 142 -297 70 151 -165 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGACCTTS MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 51 E= 5.9e-016 0.000000 0.156863 0.000000 0.843137 0.058824 0.000000 0.941176 0.000000 0.862745 0.000000 0.000000 0.137255 0.000000 1.000000 0.000000 0.000000 0.058824 0.941176 0.000000 0.000000 0.000000 0.117647 0.000000 0.882353 0.000000 0.176471 0.000000 0.823529 0.039216 0.313725 0.549020 0.098039 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGACCTTS MEME-1 regular expression -------------------------------------------------------------------------------- TGACCTT[GC] -------------------------------------------------------------------------------- Time 9.46 secs. ******************************************************************************** ******************************************************************************** MOTIF RAGAGAGA MEME-2 width = 8 sites = 56 llr = 433 E-value = 1.3e-007 ******************************************************************************** -------------------------------------------------------------------------------- Motif RAGAGAGA MEME-2 Description -------------------------------------------------------------------------------- Simplified A 4728:8:9 pos.-specific C :::::::: probability G 6:7:a:a1 matrix T :312:2:: bits 2.4 * * 2.1 * * 1.9 * * 1.7 * * Relative 1.4 * ** Entropy 1.2 * * ** (11.2 bits) 1.0 * ****** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GAGAGAGA consensus ATA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAGAGAGA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrV:13376020-13376100 56 1.21e-05 gaagaagTCA GAGAGAGA CGCTACAGAG chrX:12080972-12081052 31 1.21e-05 gagaaagaga gagagaga gagagaCAAT chrII:6344067-6344147 11 1.21e-05 TGACAAAACT GAGAGAGA TGTTGGAGAA chrI:10403880-10403960 48 1.21e-05 GATTTGaatt gagagaga aattgagaga chrII:4392768-4392848 32 1.21e-05 aagatagaga gagagaga gaCCCCAAGG chrV:17905868-17905948 41 1.21e-05 gaagaagaac gagagaga aTGACGTTTT chrIII:352207-352287 45 1.21e-05 GGATGGTGga gagagaga gagagagaga chrIII:3811570-3811650 49 1.21e-05 TCATCTCAAT GAGAGAGA TGTTTGCACA chrIV:1715892-1715972 15 1.21e-05 ATACCATCTC GAGAGAGA CATACATAAA chrIII:9927593-9927673 47 1.21e-05 TGACCCGACA GAGAGAGA AAGAGACCGC chrV:11070484-11070564 5 3.14e-05 TGAA AAGAGAGA ACACAAAAGA chrI:10281883-10281963 1 3.14e-05 . AAGAGAGA GTAGTGATCG chrIII:3809173-3809253 42 3.14e-05 aaaacaaaaa aagagaga taaagagaaa chrX:5810858-5810938 50 3.14e-05 AAAGAAAAGA AAGAGAGA TGAATTTTAC chrX:6281203-6281283 67 3.14e-05 ATACATGCCA AAGAGAGA TAGTAT chrX:13009785-13009865 15 3.14e-05 ATATATTGAA AAGAGAGA TGCAAAATTG chrIV:7309899-7309979 12 3.14e-05 GTGATAGACA AAGAGAGA AGTGAAGGTC chrIII:13534841-13534921 30 4.35e-05 AGAAGTGTCG GTGAGAGA AAAAAAGGAA chrV:13197978-13198058 13 4.35e-05 AGTTGATTTC GTGAGAGA TGAAAAAGCA chrIV:14675920-14676000 68 4.35e-05 AATTGCGGAG GTGAGAGA GTGTG chrII:8420910-8420990 68 5.56e-05 TAGCCTAAAC GAGTGAGA AAATT chrX:12844305-12844385 19 7.49e-05 AAAACTCACC GAAAGAGA AAGTTTCACG chrII:10706209-10706289 61 7.49e-05 AAAAAAAGAA GAAAGAGA TGGAAGTTTA chrX:8882321-8882401 34 1.06e-04 GAAGGTTACA GAGAGTGA AAACAGGCAA chrI:7883884-7883964 12 1.06e-04 AGAGGGACAC ATGAGAGA CAATATGTCT chrI:6733478-6733558 62 1.06e-04 ACCTCGATAT GAGAGTGA TACAATCTCC chrIV:8043042-8043122 52 1.06e-04 ACGATGAAGA ATGAGAGA GTGGAACCAA chrII:8099393-8099473 20 1.06e-04 GCTGACCTTG ATGAGAGA CTGCCAAATA chrX:433166-433246 15 1.26e-04 GAAAACGTGA AAGTGAGA AAATGGGAGG chrV:8668353-8668433 39 1.26e-04 ACTGTAAAAT AAGTGAGA GTGGAAGTAG chrIII:4614617-4614697 56 1.26e-04 GGACGATTCA AAGTGAGA TATCATTAAA chrIII:6602158-6602238 21 1.57e-04 GTTTGTTATG AAAAGAGA TGGTGGCGGT chrX:11420130-11420210 52 1.57e-04 GTGCGAGAAG AAAAGAGA AAACAAGACG chrX:11462287-11462367 43 1.57e-04 ATTAGTTCAA AAAAGAGA TAGGAAGCAA chrV:20693086-20693166 63 1.76e-04 ACGTGATGAT AAGAGTGA AGATGAAAAT chrII:12262729-12262809 29 1.96e-04 AAGTCGGTTG GAGAGAGG TTACCCGCTA chrIII:7152775-7152855 19 2.15e-04 atcatGTCCA GTAAGAGA ACGAGAGAAT chrI:524579-524659 55 2.47e-04 AAACAAAAAA GATAGAGA GGAAGGAGAT chrX:6323302-6323382 69 2.47e-04 ATACTGTAGA GATAGAGA TAAC chrV:19526327-19526407 28 2.47e-04 ATAAGAACAT GTGAGTGA CTGTTTTATA chrV:11147200-11147280 35 2.47e-04 ATAATATGAC GTGAGTGA AGATGTCTTC chrV:11797578-11797658 38 2.66e-04 AATGAAAAGT GAATGAGA ACCATGGTCA chrV:11794449-11794529 5 2.66e-04 AAAT GAATGAGA CACTTGTTGT chrI:6997112-6997192 8 3.10e-04 CGGGGGA ATGTGAGA CTATAAAATT chrI:3277989-3278069 61 3.10e-04 CGCGAGTCGG GAGTGTGA CTTGATTTTG chrIV:1371495-1371575 73 3.67e-04 CCGACAGACA GGGAGAGA chrX:16555906-16555986 21 3.67e-04 GATAAAGCAG ATAAGAGA CGAATTACTC chrX:16322002-16322082 69 4.18e-04 TTGGAGGCTA ATGAGTGA TTGA chrV:13790700-13790780 31 4.18e-04 TTCACAAAGA AATAGAGA CCGACACACA chrX:10630210-10630290 7 4.18e-04 AAGGAG ATGAGTGA GTCACCTGAC chrX:13014503-13014583 24 4.56e-04 CAAAGAAAGA AAATGAGA GGTACCCCCA chrIII:10907827-10907907 59 4.56e-04 CAAAACCGGA AAATGAGA CGGAAGAGAA chrI:12503083-12503163 16 5.03e-04 AATAATAATC GAGTGAGG TGACGAAATG chrIII:11255215-11255295 43 5.03e-04 TCTAGAGAAA GTTAGAGA GATTCTAGAC chrII:11205956-11206036 22 5.46e-04 TTTGACGAAA AAAAGTGA ATTTTTGATA chrX:7330847-7330927 20 5.77e-04 GACTGTTAGT GAAAGAGG GTGAAGAAGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAGAGAGA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:13376020-13376100 1.2e-05 55_[+2]_17 chrX:12080972-12081052 1.2e-05 30_[+2]_42 chrII:6344067-6344147 1.2e-05 10_[+2]_62 chrI:10403880-10403960 1.2e-05 47_[+2]_25 chrII:4392768-4392848 1.2e-05 31_[+2]_41 chrV:17905868-17905948 1.2e-05 40_[+2]_32 chrIII:352207-352287 1.2e-05 44_[+2]_28 chrIII:3811570-3811650 1.2e-05 48_[+2]_24 chrIV:1715892-1715972 1.2e-05 14_[+2]_58 chrIII:9927593-9927673 1.2e-05 46_[+2]_26 chrV:11070484-11070564 3.1e-05 4_[+2]_68 chrI:10281883-10281963 3.1e-05 [+2]_72 chrIII:3809173-3809253 3.1e-05 41_[+2]_31 chrX:5810858-5810938 3.1e-05 49_[+2]_23 chrX:6281203-6281283 3.1e-05 66_[+2]_6 chrX:13009785-13009865 3.1e-05 14_[+2]_58 chrIV:7309899-7309979 3.1e-05 11_[+2]_61 chrIII:13534841-13534921 4.3e-05 29_[+2]_43 chrV:13197978-13198058 4.3e-05 12_[+2]_60 chrIV:14675920-14676000 4.3e-05 67_[+2]_5 chrII:8420910-8420990 5.6e-05 67_[+2]_5 chrX:12844305-12844385 7.5e-05 18_[+2]_54 chrII:10706209-10706289 7.5e-05 60_[+2]_12 chrX:8882321-8882401 0.00011 33_[+2]_39 chrI:7883884-7883964 0.00011 11_[+2]_61 chrI:6733478-6733558 0.00011 61_[+2]_11 chrIV:8043042-8043122 0.00011 51_[+2]_21 chrII:8099393-8099473 0.00011 19_[+2]_53 chrX:433166-433246 0.00013 14_[+2]_58 chrV:8668353-8668433 0.00013 38_[+2]_34 chrIII:4614617-4614697 0.00013 55_[+2]_17 chrIII:6602158-6602238 0.00016 20_[+2]_52 chrX:11420130-11420210 0.00016 51_[+2]_21 chrX:11462287-11462367 0.00016 42_[+2]_30 chrV:20693086-20693166 0.00018 62_[+2]_10 chrII:12262729-12262809 0.0002 28_[+2]_44 chrIII:7152775-7152855 0.00022 18_[+2]_54 chrI:524579-524659 0.00025 54_[+2]_18 chrX:6323302-6323382 0.00025 68_[+2]_4 chrV:19526327-19526407 0.00025 27_[+2]_45 chrV:11147200-11147280 0.00025 34_[+2]_38 chrV:11797578-11797658 0.00027 37_[+2]_35 chrV:11794449-11794529 0.00027 4_[+2]_68 chrI:6997112-6997192 0.00031 7_[+2]_65 chrI:3277989-3278069 0.00031 60_[+2]_12 chrIV:1371495-1371575 0.00037 72_[+2] chrX:16555906-16555986 0.00037 20_[+2]_52 chrX:16322002-16322082 0.00042 68_[+2]_4 chrV:13790700-13790780 0.00042 30_[+2]_42 chrX:10630210-10630290 0.00042 6_[+2]_66 chrX:13014503-13014583 0.00046 23_[+2]_49 chrIII:10907827-10907907 0.00046 58_[+2]_14 chrI:12503083-12503163 0.0005 15_[+2]_57 chrIII:11255215-11255295 0.0005 42_[+2]_30 chrII:11205956-11206036 0.00055 21_[+2]_51 chrX:7330847-7330927 0.00058 19_[+2]_53 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAGAGAGA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RAGAGAGA width=8 seqs=56 chrV:13376020-13376100 ( 56) GAGAGAGA 1 chrX:12080972-12081052 ( 31) GAGAGAGA 1 chrII:6344067-6344147 ( 11) GAGAGAGA 1 chrI:10403880-10403960 ( 48) GAGAGAGA 1 chrII:4392768-4392848 ( 32) GAGAGAGA 1 chrV:17905868-17905948 ( 41) GAGAGAGA 1 chrIII:352207-352287 ( 45) GAGAGAGA 1 chrIII:3811570-3811650 ( 49) GAGAGAGA 1 chrIV:1715892-1715972 ( 15) GAGAGAGA 1 chrIII:9927593-9927673 ( 47) GAGAGAGA 1 chrV:11070484-11070564 ( 5) AAGAGAGA 1 chrI:10281883-10281963 ( 1) AAGAGAGA 1 chrIII:3809173-3809253 ( 42) AAGAGAGA 1 chrX:5810858-5810938 ( 50) AAGAGAGA 1 chrX:6281203-6281283 ( 67) AAGAGAGA 1 chrX:13009785-13009865 ( 15) AAGAGAGA 1 chrIV:7309899-7309979 ( 12) AAGAGAGA 1 chrIII:13534841-13534921 ( 30) GTGAGAGA 1 chrV:13197978-13198058 ( 13) GTGAGAGA 1 chrIV:14675920-14676000 ( 68) GTGAGAGA 1 chrII:8420910-8420990 ( 68) GAGTGAGA 1 chrX:12844305-12844385 ( 19) GAAAGAGA 1 chrII:10706209-10706289 ( 61) GAAAGAGA 1 chrX:8882321-8882401 ( 34) GAGAGTGA 1 chrI:7883884-7883964 ( 12) ATGAGAGA 1 chrI:6733478-6733558 ( 62) GAGAGTGA 1 chrIV:8043042-8043122 ( 52) ATGAGAGA 1 chrII:8099393-8099473 ( 20) ATGAGAGA 1 chrX:433166-433246 ( 15) AAGTGAGA 1 chrV:8668353-8668433 ( 39) AAGTGAGA 1 chrIII:4614617-4614697 ( 56) AAGTGAGA 1 chrIII:6602158-6602238 ( 21) AAAAGAGA 1 chrX:11420130-11420210 ( 52) AAAAGAGA 1 chrX:11462287-11462367 ( 43) AAAAGAGA 1 chrV:20693086-20693166 ( 63) AAGAGTGA 1 chrII:12262729-12262809 ( 29) GAGAGAGG 1 chrIII:7152775-7152855 ( 19) GTAAGAGA 1 chrI:524579-524659 ( 55) GATAGAGA 1 chrX:6323302-6323382 ( 69) GATAGAGA 1 chrV:19526327-19526407 ( 28) GTGAGTGA 1 chrV:11147200-11147280 ( 35) GTGAGTGA 1 chrV:11797578-11797658 ( 38) GAATGAGA 1 chrV:11794449-11794529 ( 5) GAATGAGA 1 chrI:6997112-6997192 ( 8) ATGTGAGA 1 chrI:3277989-3278069 ( 61) GAGTGTGA 1 chrIV:1371495-1371575 ( 73) GGGAGAGA 1 chrX:16555906-16555986 ( 21) ATAAGAGA 1 chrX:16322002-16322082 ( 69) ATGAGTGA 1 chrV:13790700-13790780 ( 31) AATAGAGA 1 chrX:10630210-10630290 ( 7) ATGAGTGA 1 chrX:13014503-13014583 ( 24) AAATGAGA 1 chrIII:10907827-10907907 ( 59) AAATGAGA 1 chrI:12503083-12503163 ( 16) GAGTGAGG 1 chrIII:11255215-11255295 ( 43) GTTAGAGA 1 chrII:11205956-11206036 ( 22) AAAAGTGA 1 chrX:7330847-7330927 ( 20) GAAAGAGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAGAGAGA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.0167 E= 1.3e-007 54 -1245 153 -1245 125 -1245 -343 -30 -40 -1245 186 -211 139 -1245 -1245 -65 -1245 -1245 238 -1245 145 -1245 -1245 -94 -1245 -1245 238 -1245 162 -1245 -184 -1245 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAGAGAGA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 56 E= 1.3e-007 0.446429 0.000000 0.553571 0.000000 0.732143 0.000000 0.017857 0.250000 0.232143 0.000000 0.696429 0.071429 0.803571 0.000000 0.000000 0.196429 0.000000 0.000000 1.000000 0.000000 0.839286 0.000000 0.000000 0.160714 0.000000 0.000000 1.000000 0.000000 0.946429 0.000000 0.053571 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAGAGAGA MEME-2 regular expression -------------------------------------------------------------------------------- [GA][AT][GA]AGAGA -------------------------------------------------------------------------------- Time 13.13 secs. ******************************************************************************** ******************************************************************************** MOTIF MAAGGTCA MEME-3 width = 8 sites = 38 llr = 311 E-value = 7.5e-002 ******************************************************************************** -------------------------------------------------------------------------------- Motif MAAGGTCA MEME-3 Description -------------------------------------------------------------------------------- Simplified A 48a::2:8 pos.-specific C 5::::19: probability G 12:aa1:2 matrix T :::::71: bits 2.4 ** 2.1 ** 1.9 ** * 1.7 *** * Relative 1.4 *** * Entropy 1.2 **** ** (11.8 bits) 1.0 **** ** 0.7 ***** ** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CAAGGTCA consensus A A G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MAAGGTCA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIII:12009982-12010062 24 1.21e-05 TTGAAACCTT CAAGGTCA TCATCATTAC chrV:11616080-11616160 36 1.21e-05 TTTCTATTTT CAAGGTCA AAAATATCTG chrIV:12429719-12429799 64 1.21e-05 GTCTATGTGA CAAGGTCA AATTAGCTG chrI:13034873-13034953 50 1.21e-05 TACCTGAATT CAAGGTCA AAATCATCAT chrX:13781267-13781347 61 1.21e-05 GCAAATTGGG CAAGGTCA CCATGTATTC chrX:8584952-8585032 3 3.90e-05 TA AAAGGTCA CTCCTTAGAA chrII:6345914-6345994 55 3.90e-05 TTCAAAAGGT AAAGGTCA CGTTTTCGAT chrV:13704087-13704167 34 3.90e-05 TTGACCCCCT CAAGGTCG GATTATGAAG chrX:11462287-11462367 22 3.90e-05 ACATTGCAAC AAAGGTCA ATCATTAGTT chrX:10302073-10302153 61 3.90e-05 TTGTGTATCT AAAGGTCA CTCTTCAAGT chrX:2588146-2588226 7 3.90e-05 CTCTAC CAAGGTCG AATTGTCTTG chrV:20693086-20693166 35 5.87e-05 CATACAGTCT CGAGGTCA TCTGATGACG chrII:60239-60319 42 5.87e-05 TCAATCGTTT CGAGGTCA GTTCTCGGTT chrX:9111757-9111837 10 5.87e-05 ATTGTCGAT CAAGGACA CGCTCTCCCA chrX:5803637-5803717 54 5.87e-05 GGGTCACTCA CAAGGACA CAACTTGTTA chrX:13009093-13009173 31 5.87e-05 TCGAGCCCTT CAAGGACA GACAACTCTC chrIV:17472213-17472293 41 8.29e-05 AACCGGTTTC AAAGGTCG AGATGAAGAG chrV:11527257-11527337 9 8.29e-05 CCATCGAG AAAGGTCG TTTTCAGAGA chrII:15203527-15203607 6 8.29e-05 ATTGC AAAGGTCG TGCCAAAAGC chrIV:7309899-7309979 23 8.29e-05 AGAGAGAAGT GAAGGTCA TATATACAAC chrV:14998898-14998978 17 8.29e-05 TTTCGAAGGG GAAGGTCA TGCACCTCCA chrV:11181158-11181238 61 8.29e-05 TGTAAACTGT GAAGGTCA AGTAGTCAAA chrII:11020893-11020973 61 1.27e-04 GTAAACCCGC CAAGGACG GACACGATTT chrIII:6799069-6799149 57 1.27e-04 ACACATTGCA AAAGGACA CCATGGTAGG chrI:8986695-8986775 33 1.27e-04 TTGACATCAT AGAGGTCA GCTACGTTCA chrIV:5563445-5563525 24 1.34e-04 TTGTTGTCTT CGAGGACA TCGTCGGGGC chrIV:10816132-10816212 33 1.49e-04 ACGTTCGGTT CAAGGCCA TTTTAACCAT chrIV:13079213-13079293 28 1.49e-04 TTTGAGCATA CAAGGCCA ATTCCAAAAA chrV:17905868-17905948 1 1.49e-04 . CAAGGGCA ATCaagtagt chrX:16322002-16322082 26 1.96e-04 TATAAGACGA AGAGGTCG CGGGAAGACG chrV:15661197-15661277 34 1.96e-04 CAATGGCAGG AGAGGTCG TGACCTTTGT chrX:5659753-5659833 59 1.96e-04 GGCGAGACAC AAAGGACG TTATGGTAGC chrIII:352207-352287 9 1.96e-04 AGAAAATT GAAGGACA TTGGATGTTT chrV:14151143-14151223 37 2.13e-04 GTCGAACCGC AGAGGACA CAGAAAAGAC chrV:11797578-11797658 10 2.66e-04 TCTCTGGTG CAAGGTTA ATTGAAAATG chrII:4392768-4392848 45 2.66e-04 agagagaCCC CAAGGTTA TACGTCTGTT chrV:13200798-13200878 30 2.66e-04 GAAAACAATA AAAGGGCA ACACTGTAAG chrX:12999731-12999811 16 2.66e-04 AACTGCTTCT CAAGGTTA TTCATGTGAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MAAGGTCA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:12009982-12010062 1.2e-05 23_[+3]_49 chrV:11616080-11616160 1.2e-05 35_[+3]_37 chrIV:12429719-12429799 1.2e-05 63_[+3]_9 chrI:13034873-13034953 1.2e-05 49_[+3]_23 chrX:13781267-13781347 1.2e-05 60_[+3]_12 chrX:8584952-8585032 3.9e-05 2_[+3]_70 chrII:6345914-6345994 3.9e-05 54_[+3]_18 chrV:13704087-13704167 3.9e-05 33_[+3]_39 chrX:11462287-11462367 3.9e-05 21_[+3]_51 chrX:10302073-10302153 3.9e-05 60_[+3]_12 chrX:2588146-2588226 3.9e-05 6_[+3]_66 chrV:20693086-20693166 5.9e-05 34_[+3]_38 chrII:60239-60319 5.9e-05 41_[+3]_31 chrX:9111757-9111837 5.9e-05 9_[+3]_63 chrX:5803637-5803717 5.9e-05 53_[+3]_19 chrX:13009093-13009173 5.9e-05 30_[+3]_42 chrIV:17472213-17472293 8.3e-05 40_[+3]_32 chrV:11527257-11527337 8.3e-05 8_[+3]_64 chrII:15203527-15203607 8.3e-05 5_[+3]_67 chrIV:7309899-7309979 8.3e-05 22_[+3]_50 chrV:14998898-14998978 8.3e-05 16_[+3]_56 chrV:11181158-11181238 8.3e-05 60_[+3]_12 chrII:11020893-11020973 0.00013 60_[+3]_12 chrIII:6799069-6799149 0.00013 56_[+3]_16 chrI:8986695-8986775 0.00013 32_[+3]_40 chrIV:5563445-5563525 0.00013 23_[+3]_49 chrIV:10816132-10816212 0.00015 32_[+3]_40 chrIV:13079213-13079293 0.00015 27_[+3]_45 chrV:17905868-17905948 0.00015 [+3]_72 chrX:16322002-16322082 0.0002 25_[+3]_47 chrV:15661197-15661277 0.0002 33_[+3]_39 chrX:5659753-5659833 0.0002 58_[+3]_14 chrIII:352207-352287 0.0002 8_[+3]_64 chrV:14151143-14151223 0.00021 36_[+3]_36 chrV:11797578-11797658 0.00027 9_[+3]_63 chrII:4392768-4392848 0.00027 44_[+3]_28 chrV:13200798-13200878 0.00027 29_[+3]_43 chrX:12999731-12999811 0.00027 15_[+3]_57 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MAAGGTCA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF MAAGGTCA width=8 seqs=38 chrIII:12009982-12010062 ( 24) CAAGGTCA 1 chrV:11616080-11616160 ( 36) CAAGGTCA 1 chrIV:12429719-12429799 ( 64) CAAGGTCA 1 chrI:13034873-13034953 ( 50) CAAGGTCA 1 chrX:13781267-13781347 ( 61) CAAGGTCA 1 chrX:8584952-8585032 ( 3) AAAGGTCA 1 chrII:6345914-6345994 ( 55) AAAGGTCA 1 chrV:13704087-13704167 ( 34) CAAGGTCG 1 chrX:11462287-11462367 ( 22) AAAGGTCA 1 chrX:10302073-10302153 ( 61) AAAGGTCA 1 chrX:2588146-2588226 ( 7) CAAGGTCG 1 chrV:20693086-20693166 ( 35) CGAGGTCA 1 chrII:60239-60319 ( 42) CGAGGTCA 1 chrX:9111757-9111837 ( 10) CAAGGACA 1 chrX:5803637-5803717 ( 54) CAAGGACA 1 chrX:13009093-13009173 ( 31) CAAGGACA 1 chrIV:17472213-17472293 ( 41) AAAGGTCG 1 chrV:11527257-11527337 ( 9) AAAGGTCG 1 chrII:15203527-15203607 ( 6) AAAGGTCG 1 chrIV:7309899-7309979 ( 23) GAAGGTCA 1 chrV:14998898-14998978 ( 17) GAAGGTCA 1 chrV:11181158-11181238 ( 61) GAAGGTCA 1 chrII:11020893-11020973 ( 61) CAAGGACG 1 chrIII:6799069-6799149 ( 57) AAAGGACA 1 chrI:8986695-8986775 ( 33) AGAGGTCA 1 chrIV:5563445-5563525 ( 24) CGAGGACA 1 chrIV:10816132-10816212 ( 33) CAAGGCCA 1 chrIV:13079213-13079293 ( 28) CAAGGCCA 1 chrV:17905868-17905948 ( 1) CAAGGGCA 1 chrX:16322002-16322082 ( 26) AGAGGTCG 1 chrV:15661197-15661277 ( 34) AGAGGTCG 1 chrX:5659753-5659833 ( 59) AAAGGACG 1 chrIII:352207-352287 ( 9) GAAGGACA 1 chrV:14151143-14151223 ( 37) AGAGGACA 1 chrV:11797578-11797658 ( 10) CAAGGTTA 1 chrII:4392768-4392848 ( 45) CAAGGTTA 1 chrV:13200798-13200878 ( 30) AAAGGGCA 1 chrX:12999731-12999811 ( 16) CAAGGTTA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MAAGGTCA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.09987 E= 7.5e-002 26 145 -87 -1189 141 -1189 -6 -1189 170 -1189 -1189 -1189 -1189 -1189 238 -1189 -1189 -1189 238 -1189 -37 -187 -187 109 -1189 226 -1189 -196 131 -1189 30 -1189 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MAAGGTCA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 38 E= 7.5e-002 0.368421 0.526316 0.105263 0.000000 0.815789 0.000000 0.184211 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.236842 0.052632 0.052632 0.657895 0.000000 0.921053 0.000000 0.078947 0.763158 0.000000 0.236842 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MAAGGTCA MEME-3 regular expression -------------------------------------------------------------------------------- [CA]AAGG[TA]C[AG] -------------------------------------------------------------------------------- Time 16.63 secs. ******************************************************************************** ******************************************************************************** MOTIF CTTCTTTT MEME-4 width = 8 sites = 23 llr = 207 E-value = 9.4e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTTCTTTT MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C 9:18:::: probability G :::::::: matrix T 1a92aaaa bits 2.4 2.1 1.9 * 1.7 ** *** * Relative 1.4 ** ***** Entropy 1.2 ******** (13.0 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CTTCTTTT consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTTCTTTT MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:5828264-5828344 50 3.15e-05 ATGTTGCGAT CTTCTTTT AACATTCCTC chrII:12239613-12239693 67 3.15e-05 TGATCTGTTT CTTCTTTT CTCCAT chrX:6323302-6323382 46 3.15e-05 TTTCCTCTCC CTTCTTTT CTTACATACT chrIII:11559843-11559923 27 3.15e-05 CCCCAATTTT CTTCTTTT TTCCGTACCA chrI:3281788-3281868 72 3.15e-05 TTTCGGTTTT CTTCTTTT C chrIII:7201560-7201640 72 3.15e-05 CTTTTTTCTT CTTCTTTT G chrI:8049579-8049659 7 3.15e-05 CTGTTT CTTCTTTT TTTTTCAACC chrII:11015477-11015557 48 3.15e-05 TTGTATTTTT CTTCTTTT TTTGCCTTTT chrI:13062756-13062836 60 3.15e-05 GAAAAAATCG CTTCTTTT CGGTCAAAAG chrIII:12014691-12014771 65 3.15e-05 CTTCAGTCTT CTTCTTTT TCTGAAAG chrI:7227789-7227869 54 3.15e-05 TACAATGTCT CTTCTTTT CTCAAGATCA chrII:9170305-9170385 60 3.15e-05 GTTTGTTTTT CTTCTTTT GAAAAAAAAC chrIV:7179094-7179174 45 3.15e-05 AAGCTTCGGT CTTCTTTT CCTCTAAATG chrII:8819661-8819741 27 5.11e-05 ACTTCCTTAT CTCCTTTT GTTCTATTTT chrII:11202784-11202864 46 5.11e-05 CCACCTCCTC CTCCTTTT CCCGCGCACA chrIV:6492049-6492129 15 5.11e-05 TATTTTCCCC CTCCTTTT TTGTGTGTTT chrX:12168710-12168790 29 1.02e-04 TTTTAATTGA CTTTTTTT CGGCCCAGCT chrV:6736265-6736345 31 1.02e-04 TTCGTTCATG CTTTTTTT TAAATATTTC chrIV:17474218-17474298 52 1.02e-04 TTACACAAAA CTTTTTTT TGAGGGGCGC chrIII:3161812-3161892 34 1.02e-04 GCTCTCTTGT CTTTTTTT GGTATTCCGG chrIV:1549837-1549917 22 1.21e-04 CACAGGTGAA CTTCTTCT CCGCGTGCGC chrIII:11255215-11255295 20 1.72e-04 AATCACAAGG TTTCTTTT TTATTTCTAG chrV:8025356-8025436 56 1.72e-04 GTGTTTAGTC TTTCTTTT CCATCAGATG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTTCTTTT MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:5828264-5828344 3.1e-05 49_[+4]_23 chrII:12239613-12239693 3.1e-05 66_[+4]_6 chrX:6323302-6323382 3.1e-05 45_[+4]_27 chrIII:11559843-11559923 3.1e-05 26_[+4]_46 chrI:3281788-3281868 3.1e-05 71_[+4]_1 chrIII:7201560-7201640 3.1e-05 71_[+4]_1 chrI:8049579-8049659 3.1e-05 6_[+4]_66 chrII:11015477-11015557 3.1e-05 47_[+4]_25 chrI:13062756-13062836 3.1e-05 59_[+4]_13 chrIII:12014691-12014771 3.1e-05 64_[+4]_8 chrI:7227789-7227869 3.1e-05 53_[+4]_19 chrII:9170305-9170385 3.1e-05 59_[+4]_13 chrIV:7179094-7179174 3.1e-05 44_[+4]_28 chrII:8819661-8819741 5.1e-05 26_[+4]_46 chrII:11202784-11202864 5.1e-05 45_[+4]_27 chrIV:6492049-6492129 5.1e-05 14_[+4]_58 chrX:12168710-12168790 0.0001 28_[+4]_44 chrV:6736265-6736345 0.0001 30_[+4]_42 chrIV:17474218-17474298 0.0001 51_[+4]_21 chrIII:3161812-3161892 0.0001 33_[+4]_39 chrIV:1549837-1549917 0.00012 21_[+4]_51 chrIII:11255215-11255295 0.00017 19_[+4]_53 chrV:8025356-8025436 0.00017 55_[+4]_17 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTTCTTTT MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTTCTTTT width=8 seqs=23 chrX:5828264-5828344 ( 50) CTTCTTTT 1 chrII:12239613-12239693 ( 67) CTTCTTTT 1 chrX:6323302-6323382 ( 46) CTTCTTTT 1 chrIII:11559843-11559923 ( 27) CTTCTTTT 1 chrI:3281788-3281868 ( 72) CTTCTTTT 1 chrIII:7201560-7201640 ( 72) CTTCTTTT 1 chrI:8049579-8049659 ( 7) CTTCTTTT 1 chrII:11015477-11015557 ( 48) CTTCTTTT 1 chrI:13062756-13062836 ( 60) CTTCTTTT 1 chrIII:12014691-12014771 ( 65) CTTCTTTT 1 chrI:7227789-7227869 ( 54) CTTCTTTT 1 chrII:9170305-9170385 ( 60) CTTCTTTT 1 chrIV:7179094-7179174 ( 45) CTTCTTTT 1 chrII:8819661-8819741 ( 27) CTCCTTTT 1 chrII:11202784-11202864 ( 46) CTCCTTTT 1 chrIV:6492049-6492129 ( 15) CTCCTTTT 1 chrX:12168710-12168790 ( 29) CTTTTTTT 1 chrV:6736265-6736345 ( 31) CTTTTTTT 1 chrIV:17474218-17474298 ( 52) CTTTTTTT 1 chrIII:3161812-3161892 ( 34) CTTTTTTT 1 chrIV:1549837-1549917 ( 22) CTTCTTCT 1 chrIII:11255215-11255295 ( 20) TTTCTTTT 1 chrV:8025356-8025436 ( 56) TTTCTTTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTTCTTTT MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.6953 E= 9.4e+000 -1117 225 -1117 -182 -1117 -1117 -1117 170 -1117 -56 -1117 150 -1117 210 -1117 -83 -1117 -1117 -1117 170 -1117 -1117 -1117 170 -1117 -214 -1117 163 -1117 -1117 -1117 170 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTTCTTTT MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 23 E= 9.4e+000 0.000000 0.913043 0.000000 0.086957 0.000000 0.000000 0.000000 1.000000 0.000000 0.130435 0.000000 0.869565 0.000000 0.826087 0.000000 0.173913 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.043478 0.000000 0.956522 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTTCTTTT MEME-4 regular expression -------------------------------------------------------------------------------- CTTCTTTT -------------------------------------------------------------------------------- Time 20.08 secs. ******************************************************************************** ******************************************************************************** MOTIF CTGCGTCT MEME-5 width = 8 sites = 7 llr = 78 E-value = 2.1e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTGCGTCT MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C a::a:1a: probability G ::a:a1:: matrix T :a:::7:a bits 2.4 * *** * 2.1 * *** * 1.9 * *** * 1.7 ***** ** Relative 1.4 ***** ** Entropy 1.2 ***** ** (16.0 bits) 1.0 ***** ** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CTGCGTCT consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCGTCT MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrII:7413430-7413510 36 7.62e-06 AGCAACCTCT CTGCGTCT CGCCTTAAGG chrI:1300112-1300192 54 7.62e-06 ctctatttat ctgcgtct cttattttca chrII:5880834-5880914 28 7.62e-06 ATTTGCATGT CTGCGTCT CTACCATGCC chrV:18569599-18569679 58 7.62e-06 AAATGTGTGT CTGCGTCT CTCGTCTCTA chrII:9555049-9555129 53 7.62e-06 GTTGATTATT CTGCGTCT TCATCTTATT chrI:10691975-10692055 27 1.71e-05 TCCTGATTCT CTGCGGCT CTCTGATTCA chrII:15203527-15203607 50 1.71e-05 TCTTTGTCAC CTGCGCCT CTTTCTTCCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCGTCT MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:7413430-7413510 7.6e-06 35_[+5]_37 chrI:1300112-1300192 7.6e-06 53_[+5]_19 chrII:5880834-5880914 7.6e-06 27_[+5]_45 chrV:18569599-18569679 7.6e-06 57_[+5]_15 chrII:9555049-9555129 7.6e-06 52_[+5]_20 chrI:10691975-10692055 1.7e-05 26_[+5]_46 chrII:15203527-15203607 1.7e-05 49_[+5]_23 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCGTCT MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTGCGTCT width=8 seqs=7 chrII:7413430-7413510 ( 36) CTGCGTCT 1 chrI:1300112-1300192 ( 54) CTGCGTCT 1 chrII:5880834-5880914 ( 28) CTGCGTCT 1 chrV:18569599-18569679 ( 58) CTGCGTCT 1 chrII:9555049-9555129 ( 53) CTGCGTCT 1 chrI:10691975-10692055 ( 27) CTGCGGCT 1 chrII:15203527-15203607 ( 50) CTGCGCCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCGTCT MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.1915 E= 2.1e+004 -945 238 -945 -945 -945 -945 -945 170 -945 -945 238 -945 -945 238 -945 -945 -945 -945 238 -945 -945 -43 -43 121 -945 238 -945 -945 -945 -945 -945 170 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCGTCT MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 2.1e+004 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.142857 0.142857 0.714286 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCGTCT MEME-5 regular expression -------------------------------------------------------------------------------- CTGCGTCT -------------------------------------------------------------------------------- Time 23.45 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:12424822-12424902 5.93e-01 80 chrIII:10908751-10908831 8.84e-01 80 chrIV:10978831-10978911 8.82e-03 49_[+1(3.20e-05)]_23 chrI:5810890-5810970 9.94e-01 80 chrIII:10904431-10904511 7.66e-01 80 chrIV:7179094-7179174 9.78e-03 44_[+4(3.15e-05)]_17_[+1(7.46e-05)]_\ 3 chrI:5808442-5808522 3.39e-01 80 chrI:5813741-5813821 6.66e-01 80 chrII:9170305-9170385 1.24e-01 59_[+4(3.15e-05)]_13 chrV:9164041-9164121 4.33e-01 80 chrIV:5563445-5563525 1.31e-02 80 chrX:10189401-10189481 2.83e-01 80 chrII:7404300-7404380 8.08e-01 80 chrII:10893667-10893747 9.10e-01 80 chrIV:10617246-10617326 7.68e-02 80 chrV:8990338-8990418 2.65e-01 80 chrIII:10907827-10907907 3.61e-02 13_[+1(3.20e-05)]_59 chrX:13009093-13009173 1.91e-01 30_[+3(5.87e-05)]_42 chrIII:12427691-12427771 2.92e-01 80 chrV:11181158-11181238 2.43e-01 60_[+3(8.29e-05)]_12 chrX:12999731-12999811 2.68e-02 80 chrI:5812417-5812497 8.61e-01 80 chrX:9586562-9586642 1.80e-01 80 chrX:13014503-13014583 2.79e-01 80 chrX:5803637-5803717 5.37e-02 53_[+3(5.87e-05)]_19 chrI:935755-935835 2.17e-01 80 chrIII:3812530-3812610 3.24e-02 80 chrX:15273063-15273143 6.08e-02 80 chrX:2588146-2588226 1.02e-01 6_[+3(3.90e-05)]_66 chrIV:1549837-1549917 1.44e-02 80 chrII:12628724-12628804 8.38e-01 80 chrV:14998898-14998978 7.95e-02 16_[+3(8.29e-05)]_56 chrX:15380061-15380141 2.79e-02 70_[+1(7.46e-05)]_2 chrV:13200798-13200878 9.13e-03 66_[+1(1.22e-05)]_6 chrI:7227789-7227869 2.91e-03 53_[+4(3.15e-05)]_19 chrII:8420910-8420990 2.97e-01 67_[+2(5.56e-05)]_5 chrV:12993089-12993169 5.29e-01 80 chrIII:3161812-3161892 1.80e-01 80 chrIII:12014691-12014771 1.03e-02 64_[+4(3.15e-05)]_8 chrIII:11624955-11625035 5.83e-01 80 chrV:11857892-11857972 2.96e-01 80 chrIV:5216464-5216544 8.11e-01 80 chrII:8419188-8419268 9.86e-01 80 chrX:5075680-5075760 4.62e-01 80 chrIII:9927593-9927673 4.65e-02 46_[+2(1.21e-05)]_26 chrIV:7311242-7311322 3.61e-02 32_[+1(5.48e-05)]_40 chrII:4759988-4760068 4.84e-01 80 chrIV:13083434-13083514 9.65e-01 80 chrI:13062756-13062836 1.19e-02 59_[+4(3.15e-05)]_13 chrV:15651920-15652000 7.21e-01 80 chrX:9111757-9111837 1.32e-01 9_[+3(5.87e-05)]_63 chrI:14905316-14905396 7.11e-01 80 chrIV:1715892-1715972 4.28e-02 14_[+2(1.21e-05)]_58 chrII:8099393-8099473 1.81e-03 11_[+1(1.22e-05)]_61 chrI:936626-936706 3.93e-01 80 chrX:10302073-10302153 1.64e-01 60_[+3(3.90e-05)]_12 chrV:12410543-12410623 2.96e-01 80 chrV:11794449-11794529 1.20e-01 80 chrX:3250846-3250926 3.28e-01 80 chrIII:3811570-3811650 6.80e-03 48_[+2(1.21e-05)]_24 chrII:11015477-11015557 1.82e-01 47_[+4(3.15e-05)]_25 chrII:1088702-1088782 5.41e-01 80 chrV:10423658-10423738 9.35e-01 80 chrX:8010768-8010848 8.71e-01 80 chrV:13412038-13412118 2.18e-01 80 chrI:8049579-8049659 8.32e-03 6_[+4(3.15e-05)]_66 chrII:10706209-10706289 2.04e-01 60_[+2(7.49e-05)]_12 chrV:11147200-11147280 1.38e-03 80 chrI:8986695-8986775 1.14e-02 80 chrI:5034431-5034511 1.25e-01 80 chrII:9555049-9555129 8.19e-03 52_[+5(7.62e-06)]_20 chrX:15161062-15161142 3.81e-02 63_[+1(5.48e-05)]_9 chrV:19526327-19526407 2.10e-01 80 chrX:11462287-11462367 1.58e-02 21_[+3(3.90e-05)]_51 chrI:9330909-9330989 5.75e-01 80 chrII:10011074-10011154 2.81e-01 80 chrV:18569599-18569679 6.69e-03 57_[+5(7.62e-06)]_15 chrIII:7900637-7900717 2.89e-01 80 chrV:13704087-13704167 8.23e-03 33_[+3(3.90e-05)]_39 chrIII:352207-352287 4.74e-03 42_[+2(1.21e-05)]_[+2(1.21e-05)]_\ [+2(1.21e-05)]_[+2(1.21e-05)]_6 chrV:20422903-20422983 1.58e-01 7_[+1(6.24e-05)]_65 chrV:11182956-11183036 3.58e-01 80 chrIV:7309899-7309979 1.12e-02 11_[+2(3.14e-05)]_3_[+3(8.29e-05)]_\ 50 chrX:13009785-13009865 1.27e-01 14_[+2(3.14e-05)]_58 chrII:11205956-11206036 4.21e-01 80 chrIII:7201560-7201640 2.42e-02 71_[+4(3.15e-05)]_1 chrI:3277989-3278069 5.49e-02 80 chrX:13005912-13005992 6.68e-02 80 chrV:11617257-11617337 7.10e-01 80 chrX:11420130-11420210 2.92e-01 80 chrI:5809463-5809543 8.91e-01 80 chrX:13004602-13004682 1.91e-01 80 chrX:13781267-13781347 7.89e-02 60_[+3(1.21e-05)]_12 chrX:16555906-16555986 1.10e-01 80 chrV:8025356-8025436 9.89e-02 80 chrI:3281788-3281868 2.72e-02 71_[+4(3.15e-05)]_1 chrIII:4614617-4614697 7.83e-02 80 chrX:5659753-5659833 9.08e-02 80 chrIV:8043042-8043122 1.49e-01 80 chrI:6998617-6998697 1.38e-01 80 chrI:13034873-13034953 5.17e-03 49_[+3(1.21e-05)]_23 chrIII:6602158-6602238 2.36e-03 65_[+1(2.44e-05)]_7 chrIII:6799069-6799149 3.60e-02 80 chrV:11543673-11543753 5.34e-01 80 chrX:13008334-13008414 5.83e-01 80 chrX:10630210-10630290 1.21e-02 80 chrV:8449363-8449443 7.95e-02 80 chrX:4386651-4386731 3.51e-01 80 chrIV:17474218-17474298 1.35e-01 80 chrIII:11559843-11559923 1.08e-01 26_[+4(3.15e-05)]_46 chrIII:4505113-4505193 3.15e-01 80 chrX:9246797-9246877 3.77e-01 80 chrII:11307511-11307591 2.11e-02 80 chrI:6733478-6733558 1.20e-03 49_[+1(3.20e-05)]_23 chrX:6281203-6281283 2.25e-03 66_[+2(3.14e-05)]_6 chrV:7686402-7686482 7.99e-01 80 chrI:5812975-5813055 9.52e-01 80 chrIII:3367935-3368015 2.99e-01 80 chrIV:12429719-12429799 2.24e-02 63_[+3(1.21e-05)]_9 chrX:2858518-2858598 8.66e-02 52_[+1(5.48e-05)]_20 chrII:60239-60319 2.38e-02 41_[+3(5.87e-05)]_31 chrII:6821348-6821428 9.40e-02 15_[+1(1.22e-05)]_57 chrI:7316937-7317017 3.88e-02 47_[+1(2.44e-05)]_25 chrV:13464294-13464374 4.09e-01 80 chrI:10514016-10514096 1.97e-01 80 chrII:4548603-4548683 6.11e-02 38_[+1(2.44e-05)]_34 chrII:9251661-9251741 4.18e-01 80 chrX:5810858-5810938 8.79e-02 49_[+2(3.14e-05)]_23 chrII:5021666-5021746 3.84e-02 59_[+1(1.22e-05)]_13 chrIII:8923526-8923606 2.02e-02 80 chrX:10691440-10691520 7.47e-02 80 chrX:4102363-4102443 7.23e-01 80 chrII:178343-178423 9.02e-01 80 chrV:17905868-17905948 4.46e-03 40_[+2(1.21e-05)]_32 chrII:5880834-5880914 3.91e-02 27_[+5(7.62e-06)]_45 chrIII:12018737-12018817 3.00e-02 80 chrX:12844305-12844385 2.39e-02 18_[+2(7.49e-05)]_54 chrIV:10984169-10984249 7.47e-01 80 chrIII:12015792-12015872 1.46e-01 80 chrI:6997112-6997192 1.21e-01 80 chrII:4151848-4151928 3.32e-01 80 chrX:2857600-2857680 2.23e-01 80 chrII:7807002-7807082 2.60e-01 80 chrI:7883884-7883964 8.95e-02 80 chrII:15204630-15204710 8.99e-02 80 chrIV:13079213-13079293 2.30e-01 80 chrX:12511525-12511605 8.19e-02 80 chrX:6323302-6323382 1.11e-02 45_[+4(3.15e-05)]_27 chrV:13392079-13392159 1.65e-02 80 chrIII:11255215-11255295 4.98e-02 80 chrIII:11262212-11262292 9.22e-01 80 chrII:6878030-6878110 6.45e-01 80 chrV:11094816-11094896 3.99e-01 80 chrI:1693254-1693334 1.01e-01 35_[+1(1.22e-05)]_37 chrIII:8577696-8577776 8.26e-01 80 chrX:9029078-9029158 6.37e-02 80 chrV:15652124-15652204 3.68e-01 80 chrIII:3809173-3809253 6.67e-03 [+1(5.48e-05)]_33_[+2(3.14e-05)]_31 chrII:12239613-12239693 3.16e-03 66_[+4(3.15e-05)]_6 chrI:524579-524659 3.27e-01 80 chrX:6277408-6277488 1.53e-01 48_[+1(3.96e-05)]_24 chrIV:14675920-14676000 1.02e-01 67_[+2(4.35e-05)]_5 chrV:11508888-11508968 3.09e-02 31_[+1(1.22e-05)]_41 chrV:15661197-15661277 2.34e-03 80 chrV:13790700-13790780 5.06e-01 80 chrX:16998171-16998251 2.49e-02 80 chrIV:6905978-6906058 7.74e-01 80 chrII:15203527-15203607 4.18e-06 5_[+3(8.29e-05)]_20_[+1(2.44e-05)]_\ 8_[+5(1.71e-05)]_23 chrV:11527257-11527337 8.69e-02 8_[+3(8.29e-05)]_64 chrV:11193355-11193435 3.89e-01 80 chrX:5339515-5339595 2.02e-01 80 chrI:1300112-1300192 6.04e-03 53_[+5(7.62e-06)]_19 chrIV:5752712-5752792 7.85e-01 80 chrII:7808278-7808358 8.35e-01 80 chrI:12503083-12503163 1.88e-01 80 chrIV:6492049-6492129 9.67e-02 14_[+4(5.11e-05)]_58 chrX:9549804-9549884 2.54e-02 60_[+1(3.20e-05)]_12 chrII:4392768-4392848 2.01e-03 9_[+2(1.21e-05)]_10_[+2(1.21e-05)]_\ 45 chrX:9585788-9585868 8.94e-01 80 chrIV:10816132-10816212 8.29e-02 80 chrII:12262729-12262809 3.51e-03 60_[+1(6.24e-05)]_12 chrV:8668353-8668433 1.69e-01 80 chrII:4921680-4921760 7.22e-02 80 chrV:11797578-11797658 8.76e-02 80 chrI:10403880-10403960 4.18e-02 47_[+2(1.21e-05)]_4_[+2(1.21e-05)]_\ 13 chrV:11616080-11616160 2.84e-02 35_[+3(1.21e-05)]_37 chrII:8226082-8226162 5.13e-01 80 chrII:5049462-5049542 4.83e-01 80 chrIII:4331072-4331152 2.55e-01 80 chrX:6663790-6663870 7.71e-01 80 chrII:6345914-6345994 1.17e-01 54_[+3(3.90e-05)]_18 chrI:3752203-3752283 3.03e-01 80 chrIII:7152775-7152855 2.94e-02 80 chrII:7413430-7413510 5.58e-03 35_[+5(7.62e-06)]_37 chrX:13325124-13325204 3.53e-01 80 chrX:6278451-6278531 5.19e-01 80 chrV:20693086-20693166 2.81e-02 34_[+3(5.87e-05)]_38 chrIV:1547324-1547404 7.08e-01 80 chrV:9631968-9632048 4.28e-01 80 chrX:9403793-9403873 2.68e-01 80 chrI:10691975-10692055 3.89e-02 26_[+5(1.71e-05)]_46 chrV:6736265-6736345 6.99e-03 15_[+1(2.44e-05)]_57 chrX:6324628-6324708 9.95e-01 80 chrX:15283931-15284011 4.58e-02 49_[+1(7.46e-05)]_23 chrV:5813404-5813484 4.80e-01 80 chrX:8585965-8586045 1.56e-01 80 chrII:11202784-11202864 1.06e-01 45_[+4(5.11e-05)]_27 chrX:17638604-17638684 6.83e-01 80 chrV:13197978-13198058 2.14e-02 12_[+2(4.35e-05)]_60 chrII:12961469-12961549 9.17e-01 80 chrII:8819661-8819741 1.12e-01 26_[+4(5.11e-05)]_46 chrV:14151143-14151223 1.26e-01 80 chrX:16322002-16322082 7.54e-02 80 chrV:4918752-4918832 3.63e-01 80 chrI:5809855-5809935 6.28e-01 80 chrII:10887238-10887318 3.45e-01 80 chrX:7330847-7330927 1.62e-02 80 chrI:10281883-10281963 1.30e-02 [+2(3.14e-05)]_72 chrX:14690348-14690428 4.59e-01 80 chrX:8882321-8882401 3.37e-02 80 chrX:2707303-2707383 6.12e-02 80 chrII:6344067-6344147 2.18e-02 10_[+2(1.21e-05)]_62 chrX:12168710-12168790 1.97e-01 80 chrIII:5453614-5453694 3.30e-02 53_[+1(1.22e-05)]_19 chrX:5518015-5518095 9.52e-03 16_[+1(2.44e-05)]_56 chrX:14009115-14009195 9.42e-02 80 chrX:8584952-8585032 5.27e-02 2_[+3(3.90e-05)]_70 chrX:433166-433246 7.90e-02 80 chrV:11070484-11070564 2.64e-03 4_[+2(3.14e-05)]_23_[+1(3.20e-05)]_\ 37 chrII:11020893-11020973 5.44e-02 80 chrX:13315259-13315339 6.08e-01 80 chrII:9987303-9987383 4.73e-02 72_[+1(6.24e-05)] chrIV:1371495-1371575 2.98e-02 80 chrX:5828264-5828344 3.30e-02 49_[+4(3.15e-05)]_23 chrX:12080972-12081052 4.61e-03 26_[+2(1.21e-05)]_[+2(1.21e-05)]_21_\ [+1(5.48e-05)]_9 chrI:3530961-3531041 8.17e-01 80 chrIII:13534841-13534921 1.25e-01 29_[+2(4.35e-05)]_43 chrI:14906289-14906369 2.58e-03 80 chrV:13376020-13376100 5.83e-02 55_[+2(1.21e-05)]_17 chrIV:17442677-17442757 1.83e-01 80 chrI:3724753-3724833 7.31e-02 80 chrIII:8621101-8621181 2.98e-01 80 chrX:12940980-12941060 4.11e-02 80 chrIII:12009982-12010062 1.57e-03 23_[+3(1.21e-05)]_49 chrX:10304362-10304442 2.06e-01 80 chrV:8079978-8080058 5.46e-01 80 chrX:10769502-10769582 6.89e-01 80 chrX:14500431-14500511 1.45e-01 80 chrIV:3439511-3439591 3.20e-02 3_[+1(3.20e-05)]_69 chrIV:17472213-17472293 1.69e-01 40_[+3(8.29e-05)]_32 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n07.farnam.hpc.yale.internal ********************************************************************************