******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/worm/fasta/RankLinear2.0_40/nhr-232.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrM:1836-1916 1.0000 80 chrV:18720209-18720289 1.0000 80 chrM:10134-10214 1.0000 80 chrIII:3499998-3500078 1.0000 80 chrM:8216-8296 1.0000 80 chrM:2957-3037 1.0000 80 chrIII:9705312-9705392 1.0000 80 chrII:5399318-5399398 1.0000 80 chrI:11585404-11585484 1.0000 80 chrIV:9316201-9316281 1.0000 80 chrIII:4542509-4542589 1.0000 80 chrIV:1358220-1358300 1.0000 80 chrIV:14013829-14013909 1.0000 80 chrV:3587834-3587914 1.0000 80 chrX:3472429-3472509 1.0000 80 chrIII:3620834-3620914 1.0000 80 chrM:7212-7292 1.0000 80 chrV:8235438-8235518 1.0000 80 chrX:3348034-3348114 1.0000 80 chrII:6831895-6831975 1.0000 80 chrIII:3623808-3623888 1.0000 80 chrM:4913-4993 1.0000 80 chrM:9056-9136 1.0000 80 chrI:6136567-6136647 1.0000 80 chrIII:1218366-1218446 1.0000 80 chrIV:16950664-16950744 1.0000 80 chrX:8156076-8156156 1.0000 80 chrV:19723084-19723164 1.0000 80 chrIV:1981098-1981178 1.0000 80 chrX:3994602-3994682 1.0000 80 chrI:6283557-6283637 1.0000 80 chrV:15553977-15554057 1.0000 80 chrM:1054-1134 1.0000 80 chrV:2674035-2674115 1.0000 80 chrII:14635360-14635440 1.0000 80 chrX:5818374-5818454 1.0000 80 chrI:1575678-1575758 1.0000 80 chrV:10717059-10717139 1.0000 80 chrX:9296746-9296826 1.0000 80 chrX:8638920-8639000 1.0000 80 chrX:3914470-3914550 1.0000 80 chrM:6103-6183 1.0000 80 chrX:5995701-5995781 1.0000 80 chrI:9855607-9855687 1.0000 80 chrI:3603230-3603310 1.0000 80 chrV:13415691-13415771 1.0000 80 chrIV:8066828-8066908 1.0000 80 chrIII:8650362-8650442 1.0000 80 chrIII:1824662-1824742 1.0000 80 chrIV:15289656-15289736 1.0000 80 chrII:3055651-3055731 1.0000 80 chrII:6565220-6565300 1.0000 80 chrM:3184-3264 1.0000 80 chrV:14876436-14876516 1.0000 80 chrII:6898139-6898219 1.0000 80 chrII:7811006-7811086 1.0000 80 chrV:15505256-15505336 1.0000 80 chrIV:11584168-11584248 1.0000 80 chrII:5293389-5293469 1.0000 80 chrX:9078311-9078391 1.0000 80 chrI:11096004-11096084 1.0000 80 chrIV:2802309-2802389 1.0000 80 chrX:16602619-16602699 1.0000 80 chrII:8128808-8128888 1.0000 80 chrIV:5038919-5038999 1.0000 80 chrIV:16684398-16684478 1.0000 80 chrM:4635-4715 1.0000 80 chrX:16928286-16928366 1.0000 80 chrIV:11310768-11310848 1.0000 80 chrX:12347972-12348052 1.0000 80 chrIV:10216974-10217054 1.0000 80 chrX:3537434-3537514 1.0000 80 chrI:11609204-11609284 1.0000 80 chrII:7001570-7001650 1.0000 80 chrI:12229247-12229327 1.0000 80 chrIII:6805632-6805712 1.0000 80 chrIII:3175125-3175205 1.0000 80 chrIV:11928518-11928598 1.0000 80 chrV:18712114-18712194 1.0000 80 chrI:3248374-3248454 1.0000 80 chrX:10596704-10596784 1.0000 80 chrX:14115656-14115736 1.0000 80 chrII:14404977-14405057 1.0000 80 chrIV:5371040-5371120 1.0000 80 chrIII:10432224-10432304 1.0000 80 chrIII:11702135-11702215 1.0000 80 chrI:2831455-2831535 1.0000 80 chrII:3267961-3268041 1.0000 80 chrX:13653725-13653805 1.0000 80 chrI:4175878-4175958 1.0000 80 chrII:6859041-6859121 1.0000 80 chrV:9293435-9293515 1.0000 80 chrX:7562766-7562846 1.0000 80 chrIII:8243158-8243238 1.0000 80 chrM:12405-12485 1.0000 80 chrI:4132268-4132348 1.0000 80 chrIII:3664369-3664449 1.0000 80 chrIII:5769880-5769960 1.0000 80 chrIII:13225168-13225248 1.0000 80 chrII:7708758-7708838 1.0000 80 chrM:10836-10916 1.0000 80 chrI:10788768-10788848 1.0000 80 chrIV:16776122-16776202 1.0000 80 chrIII:1601630-1601710 1.0000 80 chrII:5577226-5577306 1.0000 80 chrI:7214966-7215046 1.0000 80 chrIII:8653036-8653116 1.0000 80 chrII:14248210-14248290 1.0000 80 chrIV:1388183-1388263 1.0000 80 chrI:11203459-11203539 1.0000 80 chrX:11662724-11662804 1.0000 80 chrII:6943896-6943976 1.0000 80 chrV:11845109-11845189 1.0000 80 chrI:1175823-1175903 1.0000 80 chrIII:6138742-6138822 1.0000 80 chrII:1502015-1502095 1.0000 80 chrX:8925651-8925731 1.0000 80 chrIV:842810-842890 1.0000 80 chrX:8386163-8386243 1.0000 80 chrV:11239340-11239420 1.0000 80 chrV:7231002-7231082 1.0000 80 chrIII:4426795-4426875 1.0000 80 chrIV:12417267-12417347 1.0000 80 chrI:3638892-3638972 1.0000 80 chrI:10037753-10037833 1.0000 80 chrI:13310369-13310449 1.0000 80 chrV:14855804-14855884 1.0000 80 chrX:14804848-14804928 1.0000 80 chrII:4238031-4238111 1.0000 80 chrX:14504330-14504410 1.0000 80 chrII:10545464-10545544 1.0000 80 chrX:8646448-8646528 1.0000 80 chrI:9268861-9268941 1.0000 80 chrX:13584067-13584147 1.0000 80 chrX:11257181-11257261 1.0000 80 chrIII:10808129-10808209 1.0000 80 chrIII:10624735-10624815 1.0000 80 chrII:11959406-11959486 1.0000 80 chrIII:10094708-10094788 1.0000 80 chrIII:3916777-3916857 1.0000 80 chrM:2110-2190 1.0000 80 chrX:12890225-12890305 1.0000 80 chrIII:7030552-7030632 1.0000 80 chrIV:10346057-10346137 1.0000 80 chrV:6709182-6709262 1.0000 80 chrIV:16398344-16398424 1.0000 80 chrM:12604-12684 1.0000 80 chrX:10821338-10821418 1.0000 80 chrI:8530201-8530281 1.0000 80 chrM:5140-5220 1.0000 80 chrIII:535314-535394 1.0000 80 chrI:9605696-9605776 1.0000 80 chrIII:12399932-12400012 1.0000 80 chrX:6286289-6286369 1.0000 80 chrX:12843717-12843797 1.0000 80 chrX:5022779-5022859 1.0000 80 chrIII:9104255-9104335 1.0000 80 chrI:11505551-11505631 1.0000 80 chrIV:3552215-3552295 1.0000 80 chrX:10524595-10524675 1.0000 80 chrII:6248650-6248730 1.0000 80 chrI:3873885-3873965 1.0000 80 chrX:5319370-5319450 1.0000 80 chrIV:16863629-16863709 1.0000 80 chrV:8785727-8785807 1.0000 80 chrX:12367604-12367684 1.0000 80 chrIII:8106666-8106746 1.0000 80 chrV:13962160-13962240 1.0000 80 chrX:4789074-4789154 1.0000 80 chrIV:16388436-16388516 1.0000 80 chrIV:3233049-3233129 1.0000 80 chrX:4444225-4444305 1.0000 80 chrII:5772977-5773057 1.0000 80 chrI:13331070-13331150 1.0000 80 chrX:13144443-13144523 1.0000 80 chrII:3567734-3567814 1.0000 80 chrV:12780447-12780527 1.0000 80 chrIII:4947473-4947553 1.0000 80 chrIV:3524774-3524854 1.0000 80 chrI:2935727-2935807 1.0000 80 chrIV:16400995-16401075 1.0000 80 chrX:5707973-5708053 1.0000 80 chrX:4617081-4617161 1.0000 80 chrIV:9191340-9191420 1.0000 80 chrIV:14225074-14225154 1.0000 80 chrI:6532054-6532134 1.0000 80 chrX:5407427-5407507 1.0000 80 chrX:9932490-9932570 1.0000 80 chrX:1858771-1858851 1.0000 80 chrX:13527473-13527553 1.0000 80 chrIV:14872519-14872599 1.0000 80 chrI:10927434-10927514 1.0000 80 chrIV:16382330-16382410 1.0000 80 chrIII:13721316-13721396 1.0000 80 chrIII:8971827-8971907 1.0000 80 chrV:15551822-15551902 1.0000 80 chrII:3521509-3521589 1.0000 80 chrX:9622767-9622847 1.0000 80 chrI:14721562-14721642 1.0000 80 chrX:5686257-5686337 1.0000 80 chrII:9566211-9566291 1.0000 80 chrII:5057497-5057577 1.0000 80 chrX:8971579-8971659 1.0000 80 chrIII:4568691-4568771 1.0000 80 chrII:4942524-4942604 1.0000 80 chrV:4731526-4731606 1.0000 80 chrIV:6645931-6646011 1.0000 80 chrII:11157829-11157909 1.0000 80 chrV:53461-53541 1.0000 80 chrI:10034999-10035079 1.0000 80 chrIII:6887713-6887793 1.0000 80 chrI:1416047-1416127 1.0000 80 chrIII:5211355-5211435 1.0000 80 chrI:488408-488488 1.0000 80 chrIV:11026167-11026247 1.0000 80 chrX:1837860-1837940 1.0000 80 chrV:5845896-5845976 1.0000 80 chrX:9091538-9091618 1.0000 80 chrV:8631516-8631596 1.0000 80 chrIII:8768058-8768138 1.0000 80 chrIII:1122415-1122495 1.0000 80 chrIII:4369698-4369778 1.0000 80 chrIII:10856938-10857018 1.0000 80 chrIV:4020132-4020212 1.0000 80 chrIII:10818443-10818523 1.0000 80 chrIII:1604638-1604718 1.0000 80 chrI:9373105-9373185 1.0000 80 chrX:13781609-13781689 1.0000 80 chrIV:2805665-2805745 1.0000 80 chrV:13130698-13130778 1.0000 80 chrIV:2639792-2639872 1.0000 80 chrV:11113332-11113412 1.0000 80 chrIII:4171125-4171205 1.0000 80 chrIV:5334709-5334789 1.0000 80 chrX:13264717-13264797 1.0000 80 chrIII:9861640-9861720 1.0000 80 chrIV:9477754-9477834 1.0000 80 chrIV:620496-620576 1.0000 80 chrI:13161005-13161085 1.0000 80 chrIII:4427002-4427082 1.0000 80 chrX:7794473-7794553 1.0000 80 chrIII:9667985-9668065 1.0000 80 chrIV:16399176-16399256 1.0000 80 chrII:10388179-10388259 1.0000 80 chrIV:143927-144007 1.0000 80 chrIII:6551560-6551640 1.0000 80 chrIII:11371420-11371500 1.0000 80 chrX:13121253-13121333 1.0000 80 chrX:10963852-10963932 1.0000 80 chrX:6903176-6903256 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/worm/inference_raw/MEME/RankLinear2.0_40_nhr-232/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/worm/fasta/RankLinear2.0_40/nhr-232.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.254 C 0.255 G 0.25 T 0.241 Background letter frequencies (from file dataset with add-one prior applied): A 0.254 C 0.255 G 0.25 T 0.241 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF AGTGGTTA MEME-1 width = 8 sites = 23 llr = 227 E-value = 6.2e-010 ******************************************************************************** -------------------------------------------------------------------------------- Motif AGTGGTTA MEME-1 Description -------------------------------------------------------------------------------- Simplified A a::::::9 pos.-specific C ::1::1:: probability G :a:a9::1 matrix T ::9:19a: bits 2.1 ** * * 1.8 ** * * 1.6 **** *** 1.4 ******** Relative 1.2 ******** Entropy 1.0 ******** (14.3 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AGTGGTTA consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGTGGTTA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrI:13161005-13161085 69 1.41e-05 CTCGTGGTGT AGTGGTTA TCAC chrV:53461-53541 28 1.41e-05 cgcatggccg agtggtta gtacgtatgc chrX:8971579-8971659 34 1.41e-05 GTCATGTCCG AGTGGTTA AGGAGATTGA chrX:1858771-1858851 61 1.41e-05 CATGTGGTCT AGTGGTTA GGATTCGTGG chrX:5707973-5708053 68 1.41e-05 CAGGTGGCCG AGTGGTTA AGGCG chrI:2935727-2935807 6 1.41e-05 GGCCG AGTGGTTA ACACGCTCAC chrX:4444225-4444305 50 1.41e-05 CATGTGGTCT AGTGGTTA GGATTCGTGG chrIV:16388436-16388516 33 1.41e-05 TGCGTAGTAT AGTGGTTA GTACTCCACG chrI:9605696-9605776 73 1.41e-05 GCGATGTCCG AGTGGTTA chrX:8646448-8646528 45 1.41e-05 CATGTGGTCT AGTGGTTA GGATTCGTGG chrIV:842810-842890 12 1.41e-05 CATGTGGTCT AGTGGTTA GGATTCGTGG chrII:3267961-3268041 41 1.41e-05 GTCATGTCCG AGTGGTTA AGGAGATTGA chrII:6898139-6898219 68 1.41e-05 CATGTGGTCT AGTGGTTA GGATT chrV:15553977-15554057 66 1.41e-05 TGCTTAGTAT AGTGGTTA GTACTCC chrX:6903176-6903256 34 2.77e-05 ATTCGAGAGT AGTGTTTA ACAATCAAGT chrV:3587834-3587914 54 2.77e-05 CGCACTTTTA AGTGTTTA AAGTCATTTA chrV:18720209-18720289 19 2.77e-05 TAAACTTCAG AGTGTTTA ATTCAGTGGC chrII:6248650-6248730 13 4.16e-05 TCAATGGCGG AGTGGTTG TATGTGCTAT chrI:10788768-10788848 54 4.16e-05 TTGCATGCGG AGTGGTTG CGAAAGTGCG chrIV:5334709-5334789 16 7.15e-05 TCCATGGTGT AGCGGTTA GCACTCAGGA chrX:8925651-8925731 3 7.15e-05 GT AGCGGTTA GCACTCATGA chrI:4175878-4175958 57 7.15e-05 GTAGTGGTCT AGTGGCTA GCAGGCACAC chrI:11609204-11609284 42 7.15e-05 ACCGTGGCCT AGTGGCTA GTAACACAGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGTGGTTA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:13161005-13161085 1.4e-05 68_[+1]_4 chrV:53461-53541 1.4e-05 27_[+1]_45 chrX:8971579-8971659 1.4e-05 33_[+1]_39 chrX:1858771-1858851 1.4e-05 60_[+1]_12 chrX:5707973-5708053 1.4e-05 67_[+1]_5 chrI:2935727-2935807 1.4e-05 5_[+1]_67 chrX:4444225-4444305 1.4e-05 49_[+1]_23 chrIV:16388436-16388516 1.4e-05 32_[+1]_40 chrI:9605696-9605776 1.4e-05 72_[+1] chrX:8646448-8646528 1.4e-05 44_[+1]_28 chrIV:842810-842890 1.4e-05 11_[+1]_61 chrII:3267961-3268041 1.4e-05 40_[+1]_32 chrII:6898139-6898219 1.4e-05 67_[+1]_5 chrV:15553977-15554057 1.4e-05 65_[+1]_7 chrX:6903176-6903256 2.8e-05 33_[+1]_39 chrV:3587834-3587914 2.8e-05 53_[+1]_19 chrV:18720209-18720289 2.8e-05 18_[+1]_54 chrII:6248650-6248730 4.2e-05 12_[+1]_60 chrI:10788768-10788848 4.2e-05 53_[+1]_19 chrIV:5334709-5334789 7.1e-05 15_[+1]_57 chrX:8925651-8925731 7.1e-05 2_[+1]_70 chrI:4175878-4175958 7.1e-05 56_[+1]_16 chrI:11609204-11609284 7.1e-05 41_[+1]_31 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGTGGTTA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AGTGGTTA width=8 seqs=23 chrI:13161005-13161085 ( 69) AGTGGTTA 1 chrV:53461-53541 ( 28) AGTGGTTA 1 chrX:8971579-8971659 ( 34) AGTGGTTA 1 chrX:1858771-1858851 ( 61) AGTGGTTA 1 chrX:5707973-5708053 ( 68) AGTGGTTA 1 chrI:2935727-2935807 ( 6) AGTGGTTA 1 chrX:4444225-4444305 ( 50) AGTGGTTA 1 chrIV:16388436-16388516 ( 33) AGTGGTTA 1 chrI:9605696-9605776 ( 73) AGTGGTTA 1 chrX:8646448-8646528 ( 45) AGTGGTTA 1 chrIV:842810-842890 ( 12) AGTGGTTA 1 chrII:3267961-3268041 ( 41) AGTGGTTA 1 chrII:6898139-6898219 ( 68) AGTGGTTA 1 chrV:15553977-15554057 ( 66) AGTGGTTA 1 chrX:6903176-6903256 ( 34) AGTGTTTA 1 chrV:3587834-3587914 ( 54) AGTGTTTA 1 chrV:18720209-18720289 ( 19) AGTGTTTA 1 chrII:6248650-6248730 ( 13) AGTGGTTG 1 chrI:10788768-10788848 ( 54) AGTGGTTG 1 chrIV:5334709-5334789 ( 16) AGCGGTTA 1 chrX:8925651-8925731 ( 3) AGCGGTTA 1 chrI:4175878-4175958 ( 57) AGTGGCTA 1 chrI:11609204-11609284 ( 42) AGTGGCTA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGTGGTTA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.0332 E= 6.2e-010 198 -1117 -1117 -1117 -1117 -1117 200 -1117 -1117 -155 -1117 192 -1117 -1117 200 -1117 -1117 -1117 180 -88 -1117 -155 -1117 192 -1117 -1117 -1117 205 185 -1117 -152 -1117 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGTGGTTA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 23 E= 6.2e-010 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.086957 0.000000 0.913043 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.869565 0.130435 0.000000 0.086957 0.000000 0.913043 0.000000 0.000000 0.000000 1.000000 0.913043 0.000000 0.086957 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGTGGTTA MEME-1 regular expression -------------------------------------------------------------------------------- AGTGGTTA -------------------------------------------------------------------------------- Time 7.09 secs. ******************************************************************************** ******************************************************************************** MOTIF TAGCTCAG MEME-2 width = 8 sites = 14 llr = 155 E-value = 5.4e-006 ******************************************************************************** -------------------------------------------------------------------------------- Motif TAGCTCAG MEME-2 Description -------------------------------------------------------------------------------- Simplified A :a::::a: pos.-specific C :::a:a:: probability G ::a::::a matrix T a:::a::: bits 2.1 ******** 1.8 ******** 1.6 ******** 1.4 ******** Relative 1.2 ******** Entropy 1.0 ******** (16.0 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TAGCTCAG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAGCTCAG MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIV:16399176-16399256 15 1.52e-05 TGCGGGGGTA TAGCTCAG TGGTAGAGCG chrX:13781609-13781689 38 1.52e-05 GCCGCCCGGT TAGCTCAG TCGGTAGAGC chrX:4789074-4789154 65 1.52e-05 TGGGCCTCCT TAGCTCAG TTGGTAGA chrI:11505551-11505631 7 1.52e-05 GGGGTA TAGCTCAG TGGCAGAGCA chrX:6286289-6286369 39 1.52e-05 TGCGGGGGTA TAGCTCAG GGGTAGAGCG chrIV:16398344-16398424 47 1.52e-05 TGCGGGGGTA TAGCTCAG TGGTAGAGCG chrX:14804848-14804928 36 1.52e-05 CACGGGGGTA TAGCTCAG TGGCAGAGCA chrIII:8653036-8653116 26 1.52e-05 TGTGCCTCGA TAGCTCAG TTGGGAGAGC chrX:13653725-13653805 10 1.52e-05 TCGCCCTTA TAGCTCAG TGGTAGAGCG chrII:7001570-7001650 64 1.52e-05 GTTACCTGTG TAGCTCAG GGGTAGAGC chrIV:5038919-5038999 8 1.52e-05 GCCTCCT TAGCTCAG TTGGTAGAGC chrII:6565220-6565300 35 1.52e-05 CTGGCCTCCT TAGCTCAG TTGGTAGAGC chrX:8638920-8639000 9 1.52e-05 TGGGGGTA TAGCTCAG TGGCAGAGCA chrI:6136567-6136647 37 1.52e-05 GCCGCCCGGT TAGCTCAG TCGGTAGAGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAGCTCAG MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:16399176-16399256 1.5e-05 14_[+2]_58 chrX:13781609-13781689 1.5e-05 37_[+2]_35 chrX:4789074-4789154 1.5e-05 64_[+2]_8 chrI:11505551-11505631 1.5e-05 6_[+2]_66 chrX:6286289-6286369 1.5e-05 38_[+2]_34 chrIV:16398344-16398424 1.5e-05 46_[+2]_26 chrX:14804848-14804928 1.5e-05 35_[+2]_37 chrIII:8653036-8653116 1.5e-05 25_[+2]_47 chrX:13653725-13653805 1.5e-05 9_[+2]_63 chrII:7001570-7001650 1.5e-05 63_[+2]_9 chrIV:5038919-5038999 1.5e-05 7_[+2]_65 chrII:6565220-6565300 1.5e-05 34_[+2]_38 chrX:8638920-8639000 1.5e-05 8_[+2]_64 chrI:6136567-6136647 1.5e-05 36_[+2]_36 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAGCTCAG MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TAGCTCAG width=8 seqs=14 chrIV:16399176-16399256 ( 15) TAGCTCAG 1 chrX:13781609-13781689 ( 38) TAGCTCAG 1 chrX:4789074-4789154 ( 65) TAGCTCAG 1 chrI:11505551-11505631 ( 7) TAGCTCAG 1 chrX:6286289-6286369 ( 39) TAGCTCAG 1 chrIV:16398344-16398424 ( 47) TAGCTCAG 1 chrX:14804848-14804928 ( 36) TAGCTCAG 1 chrIII:8653036-8653116 ( 26) TAGCTCAG 1 chrX:13653725-13653805 ( 10) TAGCTCAG 1 chrII:7001570-7001650 ( 64) TAGCTCAG 1 chrIV:5038919-5038999 ( 8) TAGCTCAG 1 chrII:6565220-6565300 ( 35) TAGCTCAG 1 chrX:8638920-8639000 ( 9) TAGCTCAG 1 chrI:6136567-6136647 ( 37) TAGCTCAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAGCTCAG MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.1909 E= 5.4e-006 -1045 -1045 -1045 205 198 -1045 -1045 -1045 -1045 -1045 200 -1045 -1045 197 -1045 -1045 -1045 -1045 -1045 205 -1045 197 -1045 -1045 198 -1045 -1045 -1045 -1045 -1045 200 -1045 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAGCTCAG MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 14 E= 5.4e-006 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAGCTCAG MEME-2 regular expression -------------------------------------------------------------------------------- TAGCTCAG -------------------------------------------------------------------------------- Time 10.78 secs. ******************************************************************************** ******************************************************************************** MOTIF CGKGCSGC MEME-3 width = 8 sites = 46 llr = 372 E-value = 6.2e-008 ******************************************************************************** -------------------------------------------------------------------------------- Motif CGKGCSGC MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C 8:2:74:a probability G :a3a26a: matrix T 2:5:2::: bits 2.1 * * ** 1.8 * * ** 1.6 * * ** 1.4 ** * ** Relative 1.2 ** * ** Entropy 1.0 ** * *** (11.7 bits) 0.8 ** ***** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CGTGCGGC consensus G C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGKGCSGC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIII:4568691-4568771 56 1.56e-05 GCGAGAAACA CGTGCGGC GCTTGCAAAT chrI:3873885-3873965 56 1.56e-05 CCATGACTTT Cgtgcggc gagattgcga chrII:4238031-4238111 71 1.56e-05 TGCGAAAATG CGTGCGGC GC chrI:1175823-1175903 32 1.56e-05 ACATAAACTC CGTGCGGC ACACTTGCAA chrI:10788768-10788848 70 1.56e-05 TGCGAAAGTG CGTGCGGC TGT chrI:4132268-4132348 67 1.56e-05 CCACTTTAAC CGTGCGGC GTGCAG chrIV:5371040-5371120 40 1.56e-05 AAAATAAAAC CGTGCGGC AACATTGCGA chrIII:1824662-1824742 38 1.56e-05 AACTAAACCC CGTGCGGC GCTCTTGCAA chrIV:1981098-1981178 47 1.56e-05 GGCGGGCTTG CGTGCGGC TCCCCGCCCA chrIV:9316201-9316281 20 1.56e-05 TGAATAAAAC CGTGCGGC GGAATTGCGA chrI:9373105-9373185 64 3.18e-05 acaaacacCC CGGGCGGC GGTTGTGGT chrIV:14872519-14872599 6 3.18e-05 CCAAA CGGGCGGC CCTTTTCGGA chrIII:10094708-10094788 18 4.77e-05 TCCATCCGTC CGTGCCGC CCGTTTCTGT chrIII:3175125-3175205 58 4.77e-05 TGCGGAACAC CGTGCCGC TTGCTTGCAA chrX:13121253-13121333 30 6.42e-05 gaatcgaacc cgggccgc ccgcgtggca chrIV:2639792-2639872 39 6.42e-05 GAATCGAAAC CGGGCCGC GTGGGTGAAA chrII:4942524-4942604 67 6.42e-05 GCATCATTTG CGGGCCGC CAGTAA chrX:4617081-4617161 7 6.42e-05 TTCGCG CGGGCCGC GTACGCAAAC chrX:12367604-12367684 60 6.42e-05 GAATCGAACC CGGGCCGC GTGGGTGAAA chrX:10821338-10821418 11 6.42e-05 GAATCGAACC CGGGCCGC GTGGGTGAAA chrIV:1388183-1388263 55 6.42e-05 GAATCGAACC CGGGCCGC GTGGGTGAAA chrX:16928286-16928366 7 6.42e-05 cgaacc cgggccgc ccgcgtggca chrIII:4171125-4171205 40 8.08e-05 ATGTCATCTG CGCGCGGC ATATCTGCAA chrV:13962160-13962240 47 8.08e-05 GCATAAACTG CGCGCGGC AACTGCAAAA chrIV:143927-144007 58 9.55e-05 CGGTCATGGC CGTGTGGC CTAATGGATA chrX:5707973-5708053 10 9.55e-05 GAGCGGCCG CGTGTGGC GAGTATAACT chrX:14115656-14115736 38 9.55e-05 CTTTCGTGGC CGTGTGGC CTAATGGATA chrIII:3499998-3500078 13 1.11e-04 TTCCCGCTTT CGTGGGGC CTCAAACCCG chrV:11113332-11113412 28 1.58e-04 CCAAACgcaa tgtgcggc acgcgttttc chrIII:8768058-8768138 24 1.58e-04 CTGAGTAAAC TGTGCGGC GTGTTTGCGG chrIII:3916777-3916857 32 1.58e-04 ACCTAAAGTG TGTGCGGC GACTTTGCAA chrX:16602619-16602699 47 1.58e-04 ATTAACCCCC CGGGTGGC CGAATCAAGA chrII:5399318-5399398 51 1.58e-04 AGCTGCACAC TGTGCGGC ACAATTGCGA chrX:13144443-13144523 8 1.89e-04 GCCTCTT CGGGGGGC TGCCCGTCCC chrIII:3620834-3620914 9 1.89e-04 GCGACATA CGGGGGGC CGCGTATacc chrIV:3524774-3524854 50 2.04e-04 TGTCTGGCCG CGTGGCGC AATGGATAAC chrI:12229247-12229327 67 2.04e-04 ATTGCAGCAG CGTGGCGC AGTGGA chrX:9091538-9091618 41 2.50e-04 GATTTGAACT CGGGTCGC AGGATTCAAA chrIV:12417267-12417347 4 2.50e-04 ACT CGGGTCGC AGGATTCAAA chrII:9566211-9566291 33 2.82e-04 TTTTCATGGC CGCGTGGC CTAATGGATA chrIV:16863629-16863709 13 2.82e-04 AATTTCGCAA CGGGGCGC GGTTCTATGG chrII:10388179-10388259 32 3.29e-04 GTGAAAAAAG TGCGCGGC GCAATTGCAA chrIV:11310768-11310848 26 3.29e-04 AGAGGAAAAG TGCGCGGC GGGCTTGCAG chrIII:4542509-4542589 39 3.29e-04 ATAGAAAAAA TGCGCGGC GTGCTTGCAA chrI:1575678-1575758 26 3.45e-04 GGACACTTGA CGCGTCGC GTCATCGTGG chrII:5772977-5773057 33 3.76e-04 GGCCATTCGA CGCGGCGC TCCGTAGCCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGKGCSGC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:4568691-4568771 1.6e-05 55_[+3]_17 chrI:3873885-3873965 1.6e-05 55_[+3]_17 chrII:4238031-4238111 1.6e-05 70_[+3]_2 chrI:1175823-1175903 1.6e-05 31_[+3]_41 chrI:10788768-10788848 1.6e-05 69_[+3]_3 chrI:4132268-4132348 1.6e-05 66_[+3]_6 chrIV:5371040-5371120 1.6e-05 39_[+3]_33 chrIII:1824662-1824742 1.6e-05 37_[+3]_35 chrIV:1981098-1981178 1.6e-05 46_[+3]_26 chrIV:9316201-9316281 1.6e-05 19_[+3]_53 chrI:9373105-9373185 3.2e-05 63_[+3]_9 chrIV:14872519-14872599 3.2e-05 5_[+3]_67 chrIII:10094708-10094788 4.8e-05 17_[+3]_55 chrIII:3175125-3175205 4.8e-05 57_[+3]_15 chrX:13121253-13121333 6.4e-05 29_[+3]_43 chrIV:2639792-2639872 6.4e-05 38_[+3]_34 chrII:4942524-4942604 6.4e-05 66_[+3]_6 chrX:4617081-4617161 6.4e-05 6_[+3]_66 chrX:12367604-12367684 6.4e-05 59_[+3]_13 chrX:10821338-10821418 6.4e-05 10_[+3]_62 chrIV:1388183-1388263 6.4e-05 54_[+3]_18 chrX:16928286-16928366 6.4e-05 6_[+3]_66 chrIII:4171125-4171205 8.1e-05 39_[+3]_33 chrV:13962160-13962240 8.1e-05 46_[+3]_26 chrIV:143927-144007 9.6e-05 57_[+3]_15 chrX:5707973-5708053 9.6e-05 9_[+3]_63 chrX:14115656-14115736 9.6e-05 37_[+3]_35 chrIII:3499998-3500078 0.00011 12_[+3]_60 chrV:11113332-11113412 0.00016 27_[+3]_45 chrIII:8768058-8768138 0.00016 23_[+3]_49 chrIII:3916777-3916857 0.00016 31_[+3]_41 chrX:16602619-16602699 0.00016 46_[+3]_26 chrII:5399318-5399398 0.00016 50_[+3]_22 chrX:13144443-13144523 0.00019 7_[+3]_65 chrIII:3620834-3620914 0.00019 8_[+3]_64 chrIV:3524774-3524854 0.0002 49_[+3]_23 chrI:12229247-12229327 0.0002 66_[+3]_6 chrX:9091538-9091618 0.00025 40_[+3]_32 chrIV:12417267-12417347 0.00025 3_[+3]_69 chrII:9566211-9566291 0.00028 32_[+3]_40 chrIV:16863629-16863709 0.00028 12_[+3]_60 chrII:10388179-10388259 0.00033 31_[+3]_41 chrIV:11310768-11310848 0.00033 25_[+3]_47 chrIII:4542509-4542589 0.00033 38_[+3]_34 chrI:1575678-1575758 0.00035 25_[+3]_47 chrII:5772977-5773057 0.00038 32_[+3]_40 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGKGCSGC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CGKGCSGC width=8 seqs=46 chrIII:4568691-4568771 ( 56) CGTGCGGC 1 chrI:3873885-3873965 ( 56) CGTGCGGC 1 chrII:4238031-4238111 ( 71) CGTGCGGC 1 chrI:1175823-1175903 ( 32) CGTGCGGC 1 chrI:10788768-10788848 ( 70) CGTGCGGC 1 chrI:4132268-4132348 ( 67) CGTGCGGC 1 chrIV:5371040-5371120 ( 40) CGTGCGGC 1 chrIII:1824662-1824742 ( 38) CGTGCGGC 1 chrIV:1981098-1981178 ( 47) CGTGCGGC 1 chrIV:9316201-9316281 ( 20) CGTGCGGC 1 chrI:9373105-9373185 ( 64) CGGGCGGC 1 chrIV:14872519-14872599 ( 6) CGGGCGGC 1 chrIII:10094708-10094788 ( 18) CGTGCCGC 1 chrIII:3175125-3175205 ( 58) CGTGCCGC 1 chrX:13121253-13121333 ( 30) CGGGCCGC 1 chrIV:2639792-2639872 ( 39) CGGGCCGC 1 chrII:4942524-4942604 ( 67) CGGGCCGC 1 chrX:4617081-4617161 ( 7) CGGGCCGC 1 chrX:12367604-12367684 ( 60) CGGGCCGC 1 chrX:10821338-10821418 ( 11) CGGGCCGC 1 chrIV:1388183-1388263 ( 55) CGGGCCGC 1 chrX:16928286-16928366 ( 7) CGGGCCGC 1 chrIII:4171125-4171205 ( 40) CGCGCGGC 1 chrV:13962160-13962240 ( 47) CGCGCGGC 1 chrIV:143927-144007 ( 58) CGTGTGGC 1 chrX:5707973-5708053 ( 10) CGTGTGGC 1 chrX:14115656-14115736 ( 38) CGTGTGGC 1 chrIII:3499998-3500078 ( 13) CGTGGGGC 1 chrV:11113332-11113412 ( 28) TGTGCGGC 1 chrIII:8768058-8768138 ( 24) TGTGCGGC 1 chrIII:3916777-3916857 ( 32) TGTGCGGC 1 chrX:16602619-16602699 ( 47) CGGGTGGC 1 chrII:5399318-5399398 ( 51) TGTGCGGC 1 chrX:13144443-13144523 ( 8) CGGGGGGC 1 chrIII:3620834-3620914 ( 9) CGGGGGGC 1 chrIV:3524774-3524854 ( 50) CGTGGCGC 1 chrI:12229247-12229327 ( 67) CGTGGCGC 1 chrX:9091538-9091618 ( 41) CGGGTCGC 1 chrIV:12417267-12417347 ( 4) CGGGTCGC 1 chrII:9566211-9566291 ( 33) CGCGTGGC 1 chrIV:16863629-16863709 ( 13) CGGGGCGC 1 chrII:10388179-10388259 ( 32) TGCGCGGC 1 chrIV:11310768-11310848 ( 26) TGCGCGGC 1 chrIII:4542509-4542589 ( 39) TGCGCGGC 1 chrI:1575678-1575758 ( 26) CGCGTCGC 1 chrII:5772977-5773057 ( 33) CGCGGCGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGKGCSGC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.69444 E= 6.2e-008 -1217 173 -1217 -66 -1217 -1217 200 -1217 -1217 -55 47 99 -1217 -1217 200 -1217 -1217 140 -72 -47 -1217 54 133 -1217 -1217 -1217 200 -1217 -1217 197 -1217 -1217 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGKGCSGC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 46 E= 6.2e-008 0.000000 0.847826 0.000000 0.152174 0.000000 0.000000 1.000000 0.000000 0.000000 0.173913 0.347826 0.478261 0.000000 0.000000 1.000000 0.000000 0.000000 0.673913 0.152174 0.173913 0.000000 0.369565 0.630435 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGKGCSGC MEME-3 regular expression -------------------------------------------------------------------------------- CG[TG]GC[GC]GC -------------------------------------------------------------------------------- Time 15.93 secs. ******************************************************************************** ******************************************************************************** MOTIF AAAWAAAA MEME-4 width = 8 sites = 54 llr = 408 E-value = 2.0e-002 ******************************************************************************** -------------------------------------------------------------------------------- Motif AAAWAAAA MEME-4 Description -------------------------------------------------------------------------------- Simplified A 98a78979 pos.-specific C :2:::::: probability G 1:::213: matrix T :::3:1:1 bits 2.1 * 1.8 * 1.6 * * * 1.4 * * * Relative 1.2 *** ** * Entropy 1.0 ******** (10.9 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AAAAAAAA consensus C TG G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAWAAAA MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIV:4020132-4020212 60 1.73e-05 aaaaatggag aaaaaaaa tataaaaaaa chrX:9091538-9091618 7 1.73e-05 TGAACT AAAAAAAA GCATAGGTTC chrIII:6887713-6887793 2 1.73e-05 A AAAAAAAA AGTCAAGCCA chrIII:3175125-3175205 5 1.73e-05 CCCA AAAAAAAA TAAATCCACA chrX:12347972-12348052 14 1.73e-05 ATATATTTTC AAAAAAAA ACATAAAAAT chrIII:1824662-1824742 11 1.73e-05 ATATCGCCTC AAAAAAAA GTCCGATGAA chrIII:4171125-4171205 15 3.38e-05 GTGAAAATCG AAATAAAA TAGGAGAATG chrIV:1388183-1388263 17 3.38e-05 GGCAGTGCAA AAATAAAA AAATAAACTT chrIII:8243158-8243238 37 3.38e-05 GAATAAGTTA AAATAAAA TGAGATAGAT chrIV:5371040-5371120 31 3.38e-05 AAAACAGGTA AAATAAAA CCGTGCGGCA chrV:15505256-15505336 50 3.38e-05 AGGGTGGCAA AAATAAAA GCAATGTGGA chrM:6103-6183 21 3.38e-05 GATTACTTAG AAATAAAA GATGTACTAA chrIV:16950664-16950744 15 3.38e-05 GTGTTCTTCA AAATAAAA TCTTCCAGAA chrII:5399318-5399398 3 3.38e-05 TA AAATAAAA AATAATTGTT chrI:9605696-9605776 37 5.08e-05 TCTTGTTGGG AAAAAAGA ACACGGCGGT chrI:4132268-4132348 8 5.08e-05 TGGAGAT AAAAAAGA ACAGAATTTC chrI:4175878-4175958 23 5.08e-05 TATAAGAGGC AAAAAAGA GACGGGGACA chrII:5057497-5057577 53 6.82e-05 TTGTGCGTAC ACAAAAAA CCGACCTGGT chrX:10524595-10524675 17 6.82e-05 GTACTGGCGA ACAAAAAA TTAATGGCAT chrX:13584067-13584147 35 6.82e-05 ACTACTCTCT ACAAAAAA CACACTGCCT chrIII:4426795-4426875 56 6.82e-05 GAAAAATTTC ACAAAAAA TTTGGAACGC chrIV:2639792-2639872 8 8.53e-05 CCTTACA AAAAGAAA CTTCCCATGC chrX:12367604-12367684 29 8.53e-05 CACAACTGCA AAAAGAAA CTTCCCATGC chrII:10388179-10388259 3 1.01e-04 AA AAATAAGA TGGTAAAATG chrV:4731526-4731606 31 1.01e-04 TGCTTCCAAT AAATAAGA CAATTAGCCA chrIV:11310768-11310848 11 1.01e-04 AACGGCAGTA AAATAAGA GGAAAAGTGC chrV:10717059-10717139 48 1.18e-04 acacatacac acaTAAAA CGCCCTTTGA chrIII:4568691-4568771 20 1.34e-04 TAAAAGACGA AAATGAAA ATGTCGCGCG chrIII:6805632-6805712 45 1.34e-04 TTTTCTTAGT AAATGAAA TTTGCAGACC chrIV:1981098-1981178 23 1.34e-04 AATTGCTTTA AAATGAAA CTGCGCGGCG chrI:14721562-14721642 16 1.51e-04 TTTAGTGATG ACAAAAGA TGACAAAAAG chrX:5319370-5319450 5 1.51e-04 GAGT ACAAAAGA ATTGCCCCAA chrII:14404977-14405057 8 1.51e-04 GATCTGG ACAAAAGA GGCACTGTTA chrIV:10346057-10346137 46 1.68e-04 TGGGGAAAGG AAAAGAGA GAGAAAAACT chrX:12890225-12890305 50 1.68e-04 CAAACAATGA AAAAGAGA TTTGGAGGCA chrI:10034999-10035079 39 2.19e-04 ATATGGGGCG AAAAAGAA TATGATGAAG chrI:1175823-1175903 3 2.19e-04 AG AAAAATAA TAATCGAGAA chrIII:4542509-4542589 22 2.19e-04 CGAAGAGAAG AAAAAGAA TAGAAAAAAT chrIV:2805665-2805745 53 2.52e-04 TGCAAGATCC AAAAAAAT TACGCAGAAG chrI:13331070-13331150 62 2.52e-04 TGCAGGTCTA GAAAAAAA GGATTTCTGC chrIII:6138742-6138822 50 2.84e-04 aaaggagatg aaatgaga aatgagCCAA chrI:6532054-6532134 30 3.01e-04 GGCCGGCCGC ACATGAAA CGCGCAAGTA chrIV:9316201-9316281 11 3.81e-04 ATGAAAGGAT GAATAAAA CCGTGCGGCG chrII:11157829-11157909 60 4.14e-04 CTTCACATAG AAAAATGA GGGTTTATGT chrX:5022779-5022859 28 4.14e-04 AAAGAACTGC AAAAAGGA GTTGCCTGCT chrI:1416047-1416127 70 4.47e-04 CTTTGTTTTC AAAAAAGT ATT chrM:2110-2190 69 4.97e-04 GTGCTAGAAG ACAAAGAA TTTC chrI:3603230-3603310 31 4.97e-04 CAATATAATG AAAAAATA CCAGCAGCTG chrII:3567734-3567814 23 5.64e-04 GATGGTAGTA AAAAGTAA GCCCAATGCG chrV:13962160-13962240 59 5.64e-04 CGCGGCAACT GCAAAAAA GGGCGGAGCC chrI:9268861-9268941 57 5.64e-04 AGATTTGAGC AAAAGTAA GTGGGCTGAG chrII:7708758-7708838 65 5.64e-04 GCCCAAGGCA ACAAAAAT TGCTTAAA chrI:11096004-11096084 29 5.64e-04 GATAAACCAT ACAAAAAT GCACAGGTAA chrX:7794473-7794553 28 5.96e-04 CATCCACAAT GAAAGAAA TTGCGCAGAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAWAAAA MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:4020132-4020212 1.7e-05 59_[+4]_13 chrX:9091538-9091618 1.7e-05 6_[+4]_66 chrIII:6887713-6887793 1.7e-05 1_[+4]_71 chrIII:3175125-3175205 1.7e-05 4_[+4]_68 chrX:12347972-12348052 1.7e-05 13_[+4]_59 chrIII:1824662-1824742 1.7e-05 10_[+4]_62 chrIII:4171125-4171205 3.4e-05 14_[+4]_58 chrIV:1388183-1388263 3.4e-05 16_[+4]_56 chrIII:8243158-8243238 3.4e-05 36_[+4]_36 chrIV:5371040-5371120 3.4e-05 30_[+4]_42 chrV:15505256-15505336 3.4e-05 49_[+4]_23 chrM:6103-6183 3.4e-05 20_[+4]_52 chrIV:16950664-16950744 3.4e-05 14_[+4]_58 chrII:5399318-5399398 3.4e-05 2_[+4]_70 chrI:9605696-9605776 5.1e-05 36_[+4]_36 chrI:4132268-4132348 5.1e-05 7_[+4]_65 chrI:4175878-4175958 5.1e-05 22_[+4]_50 chrII:5057497-5057577 6.8e-05 52_[+4]_20 chrX:10524595-10524675 6.8e-05 16_[+4]_56 chrX:13584067-13584147 6.8e-05 34_[+4]_38 chrIII:4426795-4426875 6.8e-05 55_[+4]_17 chrIV:2639792-2639872 8.5e-05 7_[+4]_65 chrX:12367604-12367684 8.5e-05 28_[+4]_44 chrII:10388179-10388259 0.0001 2_[+4]_70 chrV:4731526-4731606 0.0001 30_[+4]_42 chrIV:11310768-11310848 0.0001 10_[+4]_62 chrV:10717059-10717139 0.00012 47_[+4]_25 chrIII:4568691-4568771 0.00013 19_[+4]_53 chrIII:6805632-6805712 0.00013 44_[+4]_28 chrIV:1981098-1981178 0.00013 22_[+4]_50 chrI:14721562-14721642 0.00015 15_[+4]_57 chrX:5319370-5319450 0.00015 4_[+4]_68 chrII:14404977-14405057 0.00015 7_[+4]_65 chrIV:10346057-10346137 0.00017 45_[+4]_27 chrX:12890225-12890305 0.00017 49_[+4]_23 chrI:10034999-10035079 0.00022 38_[+4]_34 chrI:1175823-1175903 0.00022 2_[+4]_70 chrIII:4542509-4542589 0.00022 21_[+4]_51 chrIV:2805665-2805745 0.00025 52_[+4]_20 chrI:13331070-13331150 0.00025 61_[+4]_11 chrIII:6138742-6138822 0.00028 49_[+4]_23 chrI:6532054-6532134 0.0003 29_[+4]_43 chrIV:9316201-9316281 0.00038 10_[+4]_62 chrII:11157829-11157909 0.00041 59_[+4]_13 chrX:5022779-5022859 0.00041 27_[+4]_45 chrI:1416047-1416127 0.00045 69_[+4]_3 chrM:2110-2190 0.0005 68_[+4]_4 chrI:3603230-3603310 0.0005 30_[+4]_42 chrII:3567734-3567814 0.00056 22_[+4]_50 chrV:13962160-13962240 0.00056 58_[+4]_14 chrI:9268861-9268941 0.00056 56_[+4]_16 chrII:7708758-7708838 0.00056 64_[+4]_8 chrI:11096004-11096084 0.00056 28_[+4]_44 chrX:7794473-7794553 0.0006 27_[+4]_45 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAWAAAA MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AAAWAAAA width=8 seqs=54 chrIV:4020132-4020212 ( 60) AAAAAAAA 1 chrX:9091538-9091618 ( 7) AAAAAAAA 1 chrIII:6887713-6887793 ( 2) AAAAAAAA 1 chrIII:3175125-3175205 ( 5) AAAAAAAA 1 chrX:12347972-12348052 ( 14) AAAAAAAA 1 chrIII:1824662-1824742 ( 11) AAAAAAAA 1 chrIII:4171125-4171205 ( 15) AAATAAAA 1 chrIV:1388183-1388263 ( 17) AAATAAAA 1 chrIII:8243158-8243238 ( 37) AAATAAAA 1 chrIV:5371040-5371120 ( 31) AAATAAAA 1 chrV:15505256-15505336 ( 50) AAATAAAA 1 chrM:6103-6183 ( 21) AAATAAAA 1 chrIV:16950664-16950744 ( 15) AAATAAAA 1 chrII:5399318-5399398 ( 3) AAATAAAA 1 chrI:9605696-9605776 ( 37) AAAAAAGA 1 chrI:4132268-4132348 ( 8) AAAAAAGA 1 chrI:4175878-4175958 ( 23) AAAAAAGA 1 chrII:5057497-5057577 ( 53) ACAAAAAA 1 chrX:10524595-10524675 ( 17) ACAAAAAA 1 chrX:13584067-13584147 ( 35) ACAAAAAA 1 chrIII:4426795-4426875 ( 56) ACAAAAAA 1 chrIV:2639792-2639872 ( 8) AAAAGAAA 1 chrX:12367604-12367684 ( 29) AAAAGAAA 1 chrII:10388179-10388259 ( 3) AAATAAGA 1 chrV:4731526-4731606 ( 31) AAATAAGA 1 chrIV:11310768-11310848 ( 11) AAATAAGA 1 chrV:10717059-10717139 ( 48) ACATAAAA 1 chrIII:4568691-4568771 ( 20) AAATGAAA 1 chrIII:6805632-6805712 ( 45) AAATGAAA 1 chrIV:1981098-1981178 ( 23) AAATGAAA 1 chrI:14721562-14721642 ( 16) ACAAAAGA 1 chrX:5319370-5319450 ( 5) ACAAAAGA 1 chrII:14404977-14405057 ( 8) ACAAAAGA 1 chrIV:10346057-10346137 ( 46) AAAAGAGA 1 chrX:12890225-12890305 ( 50) AAAAGAGA 1 chrI:10034999-10035079 ( 39) AAAAAGAA 1 chrI:1175823-1175903 ( 3) AAAAATAA 1 chrIII:4542509-4542589 ( 22) AAAAAGAA 1 chrIV:2805665-2805745 ( 53) AAAAAAAT 1 chrI:13331070-13331150 ( 62) GAAAAAAA 1 chrIII:6138742-6138822 ( 50) AAATGAGA 1 chrI:6532054-6532134 ( 30) ACATGAAA 1 chrIV:9316201-9316281 ( 11) GAATAAAA 1 chrII:11157829-11157909 ( 60) AAAAATGA 1 chrX:5022779-5022859 ( 28) AAAAAGGA 1 chrI:1416047-1416127 ( 70) AAAAAAGT 1 chrM:2110-2190 ( 69) ACAAAGAA 1 chrI:3603230-3603310 ( 31) AAAAAATA 1 chrII:3567734-3567814 ( 23) AAAAGTAA 1 chrV:13962160-13962240 ( 59) GCAAAAAA 1 chrI:9268861-9268941 ( 57) AAAAGTAA 1 chrII:7708758-7708838 ( 65) ACAAAAAT 1 chrI:11096004-11096084 ( 29) ACAAAAAT 1 chrX:7794473-7794553 ( 28) GAAAGAAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAWAAAA MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.96686 E= 2.0e-002 187 -1240 -176 -1240 158 -8 -1240 -1240 198 -1240 -1240 -1240 139 -1240 -1240 47 162 -1240 -17 -1240 175 -1240 -176 -170 147 -1240 15 -370 187 -1240 -1240 -170 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAWAAAA MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 54 E= 2.0e-002 0.925926 0.000000 0.074074 0.000000 0.759259 0.240741 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.666667 0.000000 0.000000 0.333333 0.777778 0.000000 0.222222 0.000000 0.851852 0.000000 0.074074 0.074074 0.703704 0.000000 0.277778 0.018519 0.925926 0.000000 0.000000 0.074074 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAWAAAA MEME-4 regular expression -------------------------------------------------------------------------------- A[AC]A[AT][AG]A[AG]A -------------------------------------------------------------------------------- Time 19.50 secs. ******************************************************************************** ******************************************************************************** MOTIF CTGAGCTA MEME-5 width = 8 sites = 14 llr = 144 E-value = 6.2e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTGAGCTA MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::9:::a pos.-specific C a::1:a1: probability G ::a:a::: matrix T :a::::9: bits 2.1 *** ** * 1.8 *** ** * 1.6 *** ** * 1.4 ******** Relative 1.2 ******** Entropy 1.0 ******** (14.8 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CTGAGCTA consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGAGCTA MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:13264717-13264797 35 1.52e-05 GCTCTACCAA CTGAGCTA TCGACGGCAT chrIII:6887713-6887793 73 1.52e-05 GCTCTACCAA CTGAGCTA chrII:11157829-11157909 31 1.52e-05 GCTCTACCGA CTGAGCTA ACCGGGCAGC chrII:5057497-5057577 9 1.52e-05 CTAACCGA CTGAGCTA TGGCGGCCGA chrX:5319370-5319450 73 1.52e-05 GCTCTCCCAA CTGAGCTA chrV:14855804-14855884 40 1.52e-05 TGCTCTGCCA CTGAGCTA TACCCCCGAC chrI:13310369-13310449 33 1.52e-05 CGCTCTACCA CTGAGCTA TAAGGGCTGC chrV:14876436-14876516 11 1.52e-05 GCTCTCCCAA CTGAGCTA TCGAGGCCGA chrIII:1218366-1218446 69 1.52e-05 CTCTAACCGA CTGAGCTA TGGC chrIV:14013829-14013909 33 1.52e-05 CGCTCTACCC CTGAGCTA TACCCCCGGA chrX:5407427-5407507 44 4.66e-05 GCGCTGCCTA CTGCGCTA CGGAAGCTCT chrIII:7030552-7030632 62 4.66e-05 CGCTCTGCCA CTGAGCCA ATGAGGCGGA chrIII:10624735-10624815 64 4.66e-05 CGCTCTGCCA CTGAGCCA ATGAGGCGC chrI:3638892-3638972 18 4.66e-05 GCGCTGCCTA CTGCGCTA CGGAAGCGGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGAGCTA MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:13264717-13264797 1.5e-05 34_[+5]_38 chrIII:6887713-6887793 1.5e-05 72_[+5] chrII:11157829-11157909 1.5e-05 30_[+5]_42 chrII:5057497-5057577 1.5e-05 8_[+5]_64 chrX:5319370-5319450 1.5e-05 72_[+5] chrV:14855804-14855884 1.5e-05 39_[+5]_33 chrI:13310369-13310449 1.5e-05 32_[+5]_40 chrV:14876436-14876516 1.5e-05 10_[+5]_62 chrIII:1218366-1218446 1.5e-05 68_[+5]_4 chrIV:14013829-14013909 1.5e-05 32_[+5]_40 chrX:5407427-5407507 4.7e-05 43_[+5]_29 chrIII:7030552-7030632 4.7e-05 61_[+5]_11 chrIII:10624735-10624815 4.7e-05 63_[+5]_9 chrI:3638892-3638972 4.7e-05 17_[+5]_55 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGAGCTA MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTGAGCTA width=8 seqs=14 chrX:13264717-13264797 ( 35) CTGAGCTA 1 chrIII:6887713-6887793 ( 73) CTGAGCTA 1 chrII:11157829-11157909 ( 31) CTGAGCTA 1 chrII:5057497-5057577 ( 9) CTGAGCTA 1 chrX:5319370-5319450 ( 73) CTGAGCTA 1 chrV:14855804-14855884 ( 40) CTGAGCTA 1 chrI:13310369-13310449 ( 33) CTGAGCTA 1 chrV:14876436-14876516 ( 11) CTGAGCTA 1 chrIII:1218366-1218446 ( 69) CTGAGCTA 1 chrIV:14013829-14013909 ( 33) CTGAGCTA 1 chrX:5407427-5407507 ( 44) CTGCGCTA 1 chrIII:7030552-7030632 ( 62) CTGAGCCA 1 chrIII:10624735-10624815 ( 64) CTGAGCCA 1 chrI:3638892-3638972 ( 18) CTGCGCTA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGAGCTA MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.1909 E= 6.2e-001 -1045 197 -1045 -1045 -1045 -1045 -1045 205 -1045 -1045 200 -1045 176 -84 -1045 -1045 -1045 -1045 200 -1045 -1045 197 -1045 -1045 -1045 -84 -1045 183 198 -1045 -1045 -1045 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGAGCTA MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 14 E= 6.2e-001 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.857143 0.142857 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.142857 0.000000 0.857143 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGAGCTA MEME-5 regular expression -------------------------------------------------------------------------------- CTGAGCTA -------------------------------------------------------------------------------- Time 22.98 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrM:1836-1916 6.61e-01 80 chrV:18720209-18720289 1.59e-02 18_[+1(2.77e-05)]_54 chrM:10134-10214 9.37e-01 80 chrIII:3499998-3500078 6.83e-02 80 chrM:8216-8296 9.30e-01 80 chrM:2957-3037 9.11e-01 80 chrIII:9705312-9705392 4.05e-01 80 chrII:5399318-5399398 8.05e-03 2_[+4(3.38e-05)]_70 chrI:11585404-11585484 4.56e-01 80 chrIV:9316201-9316281 1.37e-02 19_[+3(1.56e-05)]_53 chrIII:4542509-4542589 5.84e-02 80 chrIV:1358220-1358300 7.38e-01 80 chrIV:14013829-14013909 9.47e-03 32_[+5(1.52e-05)]_40 chrV:3587834-3587914 8.74e-02 53_[+1(2.77e-05)]_19 chrX:3472429-3472509 5.14e-01 80 chrIII:3620834-3620914 3.16e-01 80 chrM:7212-7292 8.94e-01 80 chrV:8235438-8235518 8.37e-01 80 chrX:3348034-3348114 2.51e-01 80 chrII:6831895-6831975 8.30e-01 80 chrIII:3623808-3623888 9.24e-01 80 chrM:4913-4993 4.84e-01 80 chrM:9056-9136 4.71e-01 80 chrI:6136567-6136647 4.95e-03 36_[+2(1.52e-05)]_36 chrIII:1218366-1218446 1.32e-02 68_[+5(1.52e-05)]_4 chrIV:16950664-16950744 2.07e-02 14_[+4(3.38e-05)]_58 chrX:8156076-8156156 8.98e-01 80 chrV:19723084-19723164 9.82e-01 80 chrIV:1981098-1981178 3.81e-03 46_[+3(1.56e-05)]_16_[+3(4.77e-05)]_\ 2 chrX:3994602-3994682 7.96e-01 80 chrI:6283557-6283637 3.37e-01 80 chrV:15553977-15554057 4.81e-02 65_[+1(1.41e-05)]_7 chrM:1054-1134 9.82e-01 80 chrV:2674035-2674115 6.48e-01 80 chrII:14635360-14635440 5.76e-01 80 chrX:5818374-5818454 9.38e-01 80 chrI:1575678-1575758 2.02e-01 80 chrV:10717059-10717139 2.40e-01 80 chrX:9296746-9296826 5.70e-01 80 chrX:8638920-8639000 2.44e-02 8_[+2(1.52e-05)]_64 chrX:3914470-3914550 7.69e-01 80 chrM:6103-6183 1.24e-01 20_[+4(3.38e-05)]_52 chrX:5995701-5995781 7.56e-01 80 chrI:9855607-9855687 6.11e-01 80 chrI:3603230-3603310 2.39e-01 80 chrV:13415691-13415771 9.24e-01 80 chrIV:8066828-8066908 2.14e-01 80 chrIII:8650362-8650442 4.85e-01 80 chrIII:1824662-1824742 1.58e-03 10_[+4(1.73e-05)]_19_[+3(1.56e-05)]_\ 35 chrIV:15289656-15289736 2.89e-01 80 chrII:3055651-3055731 4.87e-01 80 chrII:6565220-6565300 2.88e-02 34_[+2(1.52e-05)]_38 chrM:3184-3264 8.51e-02 50_[+4(1.73e-05)]_22 chrV:14876436-14876516 6.13e-03 10_[+5(1.52e-05)]_62 chrII:6898139-6898219 4.40e-02 67_[+1(1.41e-05)]_5 chrII:7811006-7811086 7.16e-01 80 chrV:15505256-15505336 6.83e-03 49_[+4(3.38e-05)]_23 chrIV:11584168-11584248 9.66e-01 80 chrII:5293389-5293469 7.33e-01 80 chrX:9078311-9078391 9.89e-01 80 chrI:11096004-11096084 3.03e-01 80 chrIV:2802309-2802389 3.86e-01 80 chrX:16602619-16602699 6.48e-02 80 chrII:8128808-8128888 9.66e-01 80 chrIV:5038919-5038999 2.08e-02 7_[+2(1.52e-05)]_65 chrIV:16684398-16684478 9.45e-01 80 chrM:4635-4715 7.89e-01 80 chrX:16928286-16928366 4.05e-02 6_[+3(6.42e-05)]_66 chrIV:11310768-11310848 4.05e-02 80 chrX:12347972-12348052 1.12e-01 13_[+4(1.73e-05)]_59 chrIV:10216974-10217054 7.74e-01 80 chrX:3537434-3537514 5.01e-01 80 chrI:11609204-11609284 1.39e-01 41_[+1(7.15e-05)]_31 chrII:7001570-7001650 4.00e-02 63_[+2(1.52e-05)]_9 chrI:12229247-12229327 2.46e-01 80 chrIII:6805632-6805712 1.67e-01 80 chrIII:3175125-3175205 8.38e-04 3_[+4(1.73e-05)]_46_[+3(4.77e-05)]_\ 15 chrIV:11928518-11928598 8.11e-01 80 chrV:18712114-18712194 7.84e-01 80 chrI:3248374-3248454 7.71e-01 80 chrX:10596704-10596784 3.62e-01 80 chrX:14115656-14115736 1.16e-01 37_[+3(9.55e-05)]_35 chrII:14404977-14405057 2.35e-01 80 chrIV:5371040-5371120 2.13e-03 30_[+4(3.38e-05)]_1_[+3(1.56e-05)]_\ 15_[+3(4.77e-05)]_10 chrIII:10432224-10432304 4.31e-03 80 chrIII:11702135-11702215 8.63e-01 80 chrI:2831455-2831535 6.17e-01 80 chrII:3267961-3268041 3.50e-02 40_[+1(1.41e-05)]_32 chrX:13653725-13653805 1.19e-02 9_[+2(1.52e-05)]_63 chrI:4175878-4175958 8.22e-03 22_[+4(5.08e-05)]_26_[+1(7.15e-05)]_\ 16 chrII:6859041-6859121 7.60e-01 80 chrV:9293435-9293515 5.66e-01 80 chrX:7562766-7562846 7.67e-01 80 chrIII:8243158-8243238 5.53e-02 36_[+4(3.38e-05)]_36 chrM:12405-12485 7.41e-02 80 chrI:4132268-4132348 1.18e-03 7_[+4(5.08e-05)]_51_[+3(1.56e-05)]_\ 6 chrIII:3664369-3664449 8.72e-01 80 chrIII:5769880-5769960 7.10e-01 80 chrIII:13225168-13225248 3.89e-01 80 chrII:7708758-7708838 6.35e-02 80 chrM:10836-10916 7.24e-01 80 chrI:10788768-10788848 1.64e-03 53_[+1(4.16e-05)]_8_[+3(1.56e-05)]_\ 3 chrIV:16776122-16776202 8.92e-01 80 chrIII:1601630-1601710 1.92e-01 80 chrII:5577226-5577306 6.24e-01 80 chrI:7214966-7215046 4.46e-01 80 chrIII:8653036-8653116 2.47e-02 25_[+2(1.52e-05)]_47 chrII:14248210-14248290 8.13e-01 80 chrIV:1388183-1388263 5.42e-03 16_[+4(3.38e-05)]_30_[+3(6.42e-05)]_\ 18 chrI:11203459-11203539 6.78e-01 80 chrX:11662724-11662804 2.41e-01 80 chrII:6943896-6943976 7.74e-01 80 chrV:11845109-11845189 5.02e-01 80 chrI:1175823-1175903 9.19e-03 31_[+3(1.56e-05)]_41 chrIII:6138742-6138822 1.53e-01 80 chrII:1502015-1502095 5.77e-01 80 chrX:8925651-8925731 2.09e-01 2_[+1(7.15e-05)]_70 chrIV:842810-842890 1.75e-02 11_[+1(1.41e-05)]_61 chrX:8386163-8386243 2.65e-01 80 chrV:11239340-11239420 6.41e-01 80 chrV:7231002-7231082 5.67e-01 80 chrIII:4426795-4426875 1.60e-01 55_[+4(6.82e-05)]_17 chrIV:12417267-12417347 1.47e-01 80 chrI:3638892-3638972 3.39e-02 17_[+5(4.66e-05)]_55 chrI:10037753-10037833 4.12e-01 80 chrI:13310369-13310449 1.62e-02 32_[+5(1.52e-05)]_40 chrV:14855804-14855884 6.54e-02 39_[+5(1.52e-05)]_33 chrX:14804848-14804928 5.51e-02 35_[+2(1.52e-05)]_37 chrII:4238031-4238111 2.39e-02 47_[+3(1.56e-05)]_15_[+3(1.56e-05)]_\ 2 chrX:14504330-14504410 7.78e-01 80 chrII:10545464-10545544 1.00e+00 80 chrX:8646448-8646528 3.80e-02 44_[+1(1.41e-05)]_28 chrI:9268861-9268941 1.34e-01 80 chrX:13584067-13584147 1.87e-01 34_[+4(6.82e-05)]_38 chrX:11257181-11257261 2.75e-01 80 chrIII:10808129-10808209 9.15e-01 80 chrIII:10624735-10624815 9.03e-02 63_[+5(4.66e-05)]_9 chrII:11959406-11959486 9.78e-01 80 chrIII:10094708-10094788 2.31e-01 17_[+3(4.77e-05)]_55 chrIII:3916777-3916857 5.69e-02 80 chrM:2110-2190 3.17e-01 80 chrX:12890225-12890305 4.46e-01 80 chrIII:7030552-7030632 1.21e-01 61_[+5(4.66e-05)]_11 chrIV:10346057-10346137 5.16e-01 80 chrV:6709182-6709262 9.82e-01 80 chrIV:16398344-16398424 8.78e-03 46_[+2(1.52e-05)]_26 chrM:12604-12684 6.94e-01 80 chrX:10821338-10821418 8.21e-02 10_[+3(6.42e-05)]_62 chrI:8530201-8530281 4.66e-01 80 chrM:5140-5220 8.04e-01 80 chrIII:535314-535394 5.15e-01 80 chrI:9605696-9605776 2.63e-04 36_[+4(5.08e-05)]_28_[+1(1.41e-05)] chrIII:12399932-12400012 8.45e-01 80 chrX:6286289-6286369 7.13e-02 38_[+2(1.52e-05)]_34 chrX:12843717-12843797 6.87e-01 80 chrX:5022779-5022859 3.27e-01 80 chrIII:9104255-9104335 1.86e-01 80 chrI:11505551-11505631 6.45e-03 6_[+2(1.52e-05)]_66 chrIV:3552215-3552295 6.49e-01 80 chrX:10524595-10524675 4.26e-02 16_[+4(6.82e-05)]_56 chrII:6248650-6248730 2.44e-02 12_[+1(4.16e-05)]_60 chrI:3873885-3873965 1.52e-02 55_[+3(1.56e-05)]_17 chrX:5319370-5319450 5.07e-03 72_[+5(1.52e-05)] chrIV:16863629-16863709 2.15e-01 80 chrV:8785727-8785807 9.54e-01 80 chrX:12367604-12367684 1.31e-02 28_[+4(8.53e-05)]_23_[+3(6.42e-05)]_\ 13 chrIII:8106666-8106746 8.87e-01 80 chrV:13962160-13962240 2.46e-02 46_[+3(8.08e-05)]_26 chrX:4789074-4789154 5.58e-03 64_[+2(1.52e-05)]_8 chrIV:16388436-16388516 6.23e-02 32_[+1(1.41e-05)]_40 chrIV:3233049-3233129 9.34e-01 80 chrX:4444225-4444305 6.14e-02 49_[+1(1.41e-05)]_23 chrII:5772977-5773057 2.27e-01 80 chrI:13331070-13331150 1.30e-01 80 chrX:13144443-13144523 4.88e-01 80 chrII:3567734-3567814 6.31e-02 80 chrV:12780447-12780527 8.94e-01 80 chrIII:4947473-4947553 8.83e-01 80 chrIV:3524774-3524854 2.26e-01 80 chrI:2935727-2935807 3.59e-02 5_[+1(1.41e-05)]_67 chrIV:16400995-16401075 2.58e-01 80 chrX:5707973-5708053 3.30e-03 9_[+3(9.55e-05)]_50_[+1(1.41e-05)]_\ 5 chrX:4617081-4617161 8.24e-02 6_[+3(6.42e-05)]_66 chrIV:9191340-9191420 6.67e-01 80 chrIV:14225074-14225154 8.57e-01 80 chrI:6532054-6532134 7.37e-03 80 chrX:5407427-5407507 3.56e-02 43_[+5(4.66e-05)]_29 chrX:9932490-9932570 4.39e-01 80 chrX:1858771-1858851 4.26e-02 60_[+1(1.41e-05)]_12 chrX:13527473-13527553 6.86e-01 80 chrIV:14872519-14872599 3.40e-02 5_[+3(3.18e-05)]_67 chrI:10927434-10927514 9.69e-01 80 chrIV:16382330-16382410 8.59e-01 80 chrIII:13721316-13721396 8.66e-01 80 chrIII:8971827-8971907 9.34e-01 80 chrV:15551822-15551902 4.13e-01 80 chrII:3521509-3521589 2.96e-01 80 chrX:9622767-9622847 9.05e-01 80 chrI:14721562-14721642 8.73e-02 80 chrX:5686257-5686337 9.88e-01 80 chrII:9566211-9566291 2.22e-01 80 chrII:5057497-5057577 3.00e-03 8_[+5(1.52e-05)]_36_[+4(6.82e-05)]_\ 20 chrX:8971579-8971659 3.71e-02 33_[+1(1.41e-05)]_39 chrIII:4568691-4568771 3.95e-03 31_[+3(8.08e-05)]_16_[+3(1.56e-05)]_\ 17 chrII:4942524-4942604 1.09e-02 43_[+5(6.28e-05)]_15_[+3(6.42e-05)]_\ 6 chrV:4731526-4731606 1.20e-01 80 chrIV:6645931-6646011 9.28e-01 80 chrII:11157829-11157909 2.59e-04 30_[+5(1.52e-05)]_42 chrV:53461-53541 3.03e-02 27_[+1(1.41e-05)]_45 chrI:10034999-10035079 2.83e-01 80 chrIII:6887713-6887793 2.31e-03 [+4(1.73e-05)]_64_[+5(1.52e-05)] chrI:1416047-1416127 1.98e-01 80 chrIII:5211355-5211435 1.84e-01 80 chrI:488408-488488 8.37e-01 80 chrIV:11026167-11026247 5.72e-01 80 chrX:1837860-1837940 2.60e-01 80 chrV:5845896-5845976 2.91e-01 80 chrX:9091538-9091618 5.68e-03 6_[+4(1.73e-05)]_66 chrV:8631516-8631596 4.97e-01 80 chrIII:8768058-8768138 4.85e-02 80 chrIII:1122415-1122495 3.06e-01 80 chrIII:4369698-4369778 7.56e-01 80 chrIII:10856938-10857018 6.70e-01 80 chrIV:4020132-4020212 4.83e-02 59_[+4(1.73e-05)]_4_[+4(5.08e-05)]_\ 1 chrIII:10818443-10818523 7.10e-01 80 chrIII:1604638-1604718 6.82e-01 80 chrI:9373105-9373185 9.51e-02 63_[+3(3.18e-05)]_9 chrX:13781609-13781689 8.02e-02 37_[+2(1.52e-05)]_35 chrIV:2805665-2805745 4.11e-01 80 chrV:13130698-13130778 8.37e-01 80 chrIV:2639792-2639872 1.31e-02 7_[+4(8.53e-05)]_23_[+3(6.42e-05)]_\ 34 chrV:11113332-11113412 2.20e-01 80 chrIII:4171125-4171205 4.42e-03 14_[+4(3.38e-05)]_17_[+3(8.08e-05)]_\ 33 chrIV:5334709-5334789 2.12e-01 15_[+1(7.15e-05)]_57 chrX:13264717-13264797 4.76e-02 34_[+5(1.52e-05)]_38 chrIII:9861640-9861720 6.16e-01 80 chrIV:9477754-9477834 3.66e-03 2_[+5(6.28e-05)]_70 chrIV:620496-620576 8.85e-01 80 chrI:13161005-13161085 3.28e-02 68_[+1(1.41e-05)]_4 chrIII:4427002-4427082 9.82e-01 80 chrX:7794473-7794553 4.43e-01 80 chrIII:9667985-9668065 5.54e-01 80 chrIV:16399176-16399256 7.89e-03 14_[+2(1.52e-05)]_58 chrII:10388179-10388259 2.68e-02 80 chrIV:143927-144007 1.35e-01 57_[+3(9.55e-05)]_15 chrIII:6551560-6551640 8.77e-01 80 chrIII:11371420-11371500 4.21e-01 80 chrX:13121253-13121333 6.77e-02 29_[+3(6.42e-05)]_43 chrX:10963852-10963932 7.14e-01 80 chrX:6903176-6903256 1.87e-02 33_[+1(2.77e-05)]_39 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n07.farnam.hpc.yale.internal ********************************************************************************