******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/worm/fasta/RankLinear2.0_40/nhr-20.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrV:18901716-18901796 1.0000 80 chrIII:4234766-4234846 1.0000 80 chrII:14818514-14818594 1.0000 80 chrIV:6248633-6248713 1.0000 80 chrV:2259922-2260002 1.0000 80 chrI:13533998-13534078 1.0000 80 chrX:8992009-8992089 1.0000 80 chrI:7597215-7597295 1.0000 80 chrII:11236407-11236487 1.0000 80 chrX:15081639-15081719 1.0000 80 chrII:9807728-9807808 1.0000 80 chrII:7252110-7252190 1.0000 80 chrX:4569423-4569503 1.0000 80 chrV:464956-465036 1.0000 80 chrIV:9674009-9674089 1.0000 80 chrX:17504648-17504728 1.0000 80 chrX:6122193-6122273 1.0000 80 chrII:3743835-3743915 1.0000 80 chrV:2192300-2192380 1.0000 80 chrII:5142299-5142379 1.0000 80 chrII:14841434-14841514 1.0000 80 chrV:15168305-15168385 1.0000 80 chrV:2236028-2236108 1.0000 80 chrV:211923-212003 1.0000 80 chrIV:11636466-11636546 1.0000 80 chrIV:5750072-5750152 1.0000 80 chrX:17426859-17426939 1.0000 80 chrII:6887742-6887822 1.0000 80 chrII:15111526-15111606 1.0000 80 chrIV:15901285-15901365 1.0000 80 chrII:9800422-9800502 1.0000 80 chrIV:13911093-13911173 1.0000 80 chrI:9837272-9837352 1.0000 80 chrIII:5368346-5368426 1.0000 80 chrII:14851649-14851729 1.0000 80 chrV:6505560-6505640 1.0000 80 chrIII:12005210-12005290 1.0000 80 chrIV:8103289-8103369 1.0000 80 chrX:12167840-12167920 1.0000 80 chrII:12622324-12622404 1.0000 80 chrX:5135708-5135788 1.0000 80 chrV:9079297-9079377 1.0000 80 chrIV:15385333-15385413 1.0000 80 chrII:9656358-9656438 1.0000 80 chrV:6323128-6323208 1.0000 80 chrX:13367085-13367165 1.0000 80 chrII:8765300-8765380 1.0000 80 chrIII:11262180-11262260 1.0000 80 chrIV:5765818-5765898 1.0000 80 chrX:10333496-10333576 1.0000 80 chrV:9134095-9134175 1.0000 80 chrV:7089379-7089459 1.0000 80 chrV:7686357-7686437 1.0000 80 chrV:17014226-17014306 1.0000 80 chrIV:14612217-14612297 1.0000 80 chrI:12937797-12937877 1.0000 80 chrI:11683468-11683548 1.0000 80 chrV:11800643-11800723 1.0000 80 chrX:14786910-14786990 1.0000 80 chrII:12615578-12615658 1.0000 80 chrII:9109269-9109349 1.0000 80 chrX:15264301-15264381 1.0000 80 chrV:5272732-5272812 1.0000 80 chrV:12935127-12935207 1.0000 80 chrX:11536584-11536664 1.0000 80 chrII:9161211-9161291 1.0000 80 chrV:16390827-16390907 1.0000 80 chrII:12625840-12625920 1.0000 80 chrV:3979956-3980036 1.0000 80 chrX:13555305-13555385 1.0000 80 chrII:7279968-7280048 1.0000 80 chrX:13247112-13247192 1.0000 80 chrV:9144067-9144147 1.0000 80 chrV:3967886-3967966 1.0000 80 chrII:13006491-13006571 1.0000 80 chrI:5010030-5010110 1.0000 80 chrIV:14622191-14622271 1.0000 80 chrII:9686909-9686989 1.0000 80 chrI:9842474-9842554 1.0000 80 chrV:11046907-11046987 1.0000 80 chrV:12635385-12635465 1.0000 80 chrV:7681539-7681619 1.0000 80 chrIV:9672649-9672729 1.0000 80 chrII:13616166-13616246 1.0000 80 chrII:6448880-6448960 1.0000 80 chrV:2244902-2244982 1.0000 80 chrV:2250264-2250344 1.0000 80 chrV:13782362-13782442 1.0000 80 chrX:13744710-13744790 1.0000 80 chrV:11795509-11795589 1.0000 80 chrV:5693739-5693819 1.0000 80 chrIV:5762921-5763001 1.0000 80 chrX:13411457-13411537 1.0000 80 chrIV:9668247-9668327 1.0000 80 chrII:8440961-8441041 1.0000 80 chrX:17714507-17714587 1.0000 80 chrIII:7273887-7273967 1.0000 80 chrV:6503340-6503420 1.0000 80 chrV:2212097-2212177 1.0000 80 chrIV:9063589-9063669 1.0000 80 chrII:5619434-5619514 1.0000 80 chrV:15564169-15564249 1.0000 80 chrX:6646563-6646643 1.0000 80 chrIII:5551061-5551141 1.0000 80 chrV:16779094-16779174 1.0000 80 chrV:3610859-3610939 1.0000 80 chrX:5523067-5523147 1.0000 80 chrV:15708124-15708204 1.0000 80 chrII:8822827-8822907 1.0000 80 chrI:9841061-9841141 1.0000 80 chrV:11616098-11616178 1.0000 80 chrV:4908714-4908794 1.0000 80 chrII:9752458-9752538 1.0000 80 chrV:16213487-16213567 1.0000 80 chrX:10302069-10302149 1.0000 80 chrV:11803552-11803632 1.0000 80 chrX:12188433-12188513 1.0000 80 chrX:14558080-14558160 1.0000 80 chrII:9793389-9793469 1.0000 80 chrX:2802935-2803015 1.0000 80 chrV:903633-903713 1.0000 80 chrII:9586967-9587047 1.0000 80 chrV:2238163-2238243 1.0000 80 chrV:3505904-3505984 1.0000 80 chrII:7343089-7343169 1.0000 80 chrV:6365788-6365868 1.0000 80 chrIII:4240314-4240394 1.0000 80 chrX:15073017-15073097 1.0000 80 chrV:12636322-12636402 1.0000 80 chrI:5400320-5400400 1.0000 80 chrV:4895929-4896009 1.0000 80 chrII:7090328-7090408 1.0000 80 chrIV:10971987-10972067 1.0000 80 chrV:6319524-6319604 1.0000 80 chrX:12519111-12519191 1.0000 80 chrIV:6083835-6083915 1.0000 80 chrV:11801580-11801660 1.0000 80 chrV:13358936-13359016 1.0000 80 chrIII:9666419-9666499 1.0000 80 chrX:13539903-13539983 1.0000 80 chrI:10157479-10157559 1.0000 80 chrX:13352303-13352383 1.0000 80 chrIV:5764498-5764578 1.0000 80 chrII:13618032-13618112 1.0000 80 chrIII:13012140-13012220 1.0000 80 chrX:17427967-17428047 1.0000 80 chrIV:8036669-8036749 1.0000 80 chrX:4490509-4490589 1.0000 80 chrV:8426913-8426993 1.0000 80 chrIV:9534486-9534566 1.0000 80 chrIV:9875770-9875850 1.0000 80 chrX:6256534-6256614 1.0000 80 chrX:15077839-15077919 1.0000 80 chrV:10726849-10726929 1.0000 80 chrX:13745706-13745786 1.0000 80 chrV:19429125-19429205 1.0000 80 chrII:9573628-9573708 1.0000 80 chrIV:15398802-15398882 1.0000 80 chrV:12413835-12413915 1.0000 80 chrII:7339177-7339257 1.0000 80 chrX:11533771-11533851 1.0000 80 chrII:4881926-4882006 1.0000 80 chrV:7413273-7413353 1.0000 80 chrX:2075289-2075369 1.0000 80 chrII:9344126-9344206 1.0000 80 chrII:10294424-10294504 1.0000 80 chrX:7659853-7659933 1.0000 80 chrV:2122691-2122771 1.0000 80 chrI:7759208-7759288 1.0000 80 chrV:18934709-18934789 1.0000 80 chrII:10446425-10446505 1.0000 80 chrX:17508298-17508378 1.0000 80 chrIV:15395463-15395543 1.0000 80 chrX:2316342-2316422 1.0000 80 chrIII:7273027-7273107 1.0000 80 chrIII:4236392-4236472 1.0000 80 chrII:14498036-14498116 1.0000 80 chrX:13113606-13113686 1.0000 80 chrV:9142432-9142512 1.0000 80 chrIV:4216304-4216384 1.0000 80 chrIV:9675084-9675164 1.0000 80 chrV:12071609-12071689 1.0000 80 chrV:1627406-1627486 1.0000 80 chrI:6574675-6574755 1.0000 80 chrX:15079501-15079581 1.0000 80 chrX:17096983-17097063 1.0000 80 chrX:17473040-17473120 1.0000 80 chrII:9606116-9606196 1.0000 80 chrIV:10782143-10782223 1.0000 80 chrV:3606569-3606649 1.0000 80 chrIII:11255205-11255285 1.0000 80 chrV:8026513-8026593 1.0000 80 chrII:7806975-7807055 1.0000 80 chrIII:5553183-5553263 1.0000 80 chrII:8741435-8741515 1.0000 80 chrIII:8923504-8923584 1.0000 80 chrIV:8463228-8463308 1.0000 80 chrIII:7897919-7897999 1.0000 80 chrV:11798472-11798552 1.0000 80 chrIV:1389193-1389273 1.0000 80 chrII:8813815-8813895 1.0000 80 chrII:13609801-13609881 1.0000 80 chrIV:9670132-9670212 1.0000 80 chrX:9638999-9639079 1.0000 80 chrIV:1859544-1859624 1.0000 80 chrV:3970562-3970642 1.0000 80 chrX:13663836-13663916 1.0000 80 chrIII:4412282-4412362 1.0000 80 chrII:6891989-6892069 1.0000 80 chrV:13259637-13259717 1.0000 80 chrI:7056996-7057076 1.0000 80 chrV:11531191-11531271 1.0000 80 chrV:3468630-3468710 1.0000 80 chrX:6205049-6205129 1.0000 80 chrI:10514020-10514100 1.0000 80 chrX:12990914-12990994 1.0000 80 chrX:15260439-15260519 1.0000 80 chrII:11838489-11838569 1.0000 80 chrII:5874292-5874372 1.0000 80 chrI:4804490-4804570 1.0000 80 chrX:14894534-14894614 1.0000 80 chrV:7415960-7416040 1.0000 80 chrIII:5922344-5922424 1.0000 80 chrX:12518105-12518185 1.0000 80 chrX:6642959-6643039 1.0000 80 chrII:12425936-12426016 1.0000 80 chrV:14095114-14095194 1.0000 80 chrX:12759751-12759831 1.0000 80 chrIV:17441396-17441476 1.0000 80 chrV:14539526-14539606 1.0000 80 chrIV:5778466-5778546 1.0000 80 chrII:8485748-8485828 1.0000 80 chrII:15212638-15212718 1.0000 80 chrIV:7047124-7047204 1.0000 80 chrX:8674653-8674733 1.0000 80 chrV:3984284-3984364 1.0000 80 chrX:8238715-8238795 1.0000 80 chrIV:7470185-7470265 1.0000 80 chrV:5425246-5425326 1.0000 80 chrX:6449190-6449270 1.0000 80 chrIV:13253981-13254061 1.0000 80 chrIV:9516966-9517046 1.0000 80 chrV:19955337-19955417 1.0000 80 chrX:10630237-10630317 1.0000 80 chrIV:8028477-8028557 1.0000 80 chrX:8676203-8676283 1.0000 80 chrIII:7645247-7645327 1.0000 80 chrX:4529047-4529127 1.0000 80 chrV:20693049-20693129 1.0000 80 chrV:9165395-9165475 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/worm/inference_raw/MEME/RankLinear2.0_40_nhr-20/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/worm/fasta/RankLinear2.0_40/nhr-20.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.302 C 0.203 G 0.205 T 0.29 Background letter frequencies (from file dataset with add-one prior applied): A 0.302 C 0.203 G 0.205 T 0.29 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF YCACGTGA MEME-1 width = 8 sites = 86 llr = 638 E-value = 6.8e-029 ******************************************************************************** -------------------------------------------------------------------------------- Motif YCACGTGA MEME-1 Description -------------------------------------------------------------------------------- Simplified A 1:8:1::5 pos.-specific C 3a:7:::1 probability G 1:1:9:a2 matrix T 5:13:a:2 bits 2.3 * * 2.1 * * 1.8 * *** 1.6 * *** Relative 1.4 * *** Entropy 1.1 * **** (10.7 bits) 0.9 * **** 0.7 ****** 0.5 ******* 0.2 ******** 0.0 -------- Multilevel TCACGTGA consensus C T G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCACGTGA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:4529047-4529127 12 2.26e-05 AATGCAACCT CCACGTGA TTCTCTTGTT chrX:10630237-10630317 44 2.26e-05 ACCAGTTTTG TCACGTGA TTACTAATGT chrX:8674653-8674733 19 2.26e-05 TAAAACCGTA TCACGTGA CTAGTATGGC chrX:9638999-9639079 32 2.26e-05 GATTACAGTA TCACGTGA GATCCAACCG chrIV:8463228-8463308 15 2.26e-05 GACTATCATT TCACGTGA ATCTGACGGT chrII:8741435-8741515 43 2.26e-05 GCGACCCCGA CCACGTGA CGCCAGTCTA chrX:2075289-2075369 26 2.26e-05 TTGACACGAG TCACGTGA GAATCACTAG chrIV:9534486-9534566 64 2.26e-05 GACGACGGGG TCACGTGA TGGAAGAAA chrI:10157479-10157559 25 2.26e-05 ACGTCATGAA CCACGTGA TTTTGATTTG chrIV:9668247-9668327 61 2.26e-05 GTTCACAAAA CCACGTGA CAAATGTTTA chrII:12625840-12625920 47 2.26e-05 TGTTTGGTCG CCACGTGA TCTTGCAAAA chrII:9161211-9161291 59 2.26e-05 CATGCCGTCT CCACGTGA TATCGCTTTT chrX:5135708-5135788 37 2.26e-05 CATTGAAAAG TCACGTGA ATTGGAAGGA chrIV:13911093-13911173 23 2.26e-05 GCCCAAATTT TCACGTGA GTGATACTTT chrV:12071609-12071689 14 3.79e-05 GGGCATGATA CCACGTGG CCCAACAGCG chrIV:9672649-9672729 38 3.79e-05 AAGCGTTACA TCACGTGG TCTTTCGATG chrII:12622324-12622404 54 3.79e-05 AAGGATCCGG TCACGTGG TGGATGTCAA chrV:6505560-6505640 46 3.79e-05 TTCACATGTG TCACGTGG ATAGTTTCTG chrX:17426859-17426939 14 3.79e-05 GTAAGTATAC TCACGTGG CGGAACCGAA chrII:14841434-14841514 42 3.79e-05 CTTTTCCTTC CCACGTGG TTAGTCACTT chrV:7415960-7416040 12 5.96e-05 TCAGTCAATT TCACGTGT TTCCCTGACA chrII:13609801-13609881 18 5.96e-05 ACTTCCCATG CCACGTGT CTCCGTCTCT chrV:8026513-8026593 49 5.96e-05 TCTCTGTGTC CCACGTGT AAGAATACGT chrIII:7273027-7273107 44 5.96e-05 ATGATGAAAA TCACGTGT TGGGTTGATG chrV:12935127-12935207 72 5.96e-05 TATAGTTCAA TCACGTGT G chrX:10333496-10333576 43 5.96e-05 CATGAAGTTT TCACGTGT TACTTCACGT chrX:13367085-13367165 28 5.96e-05 TCATTTTTAC TCACGTGT CGACGTCACC chrV:9079297-9079377 35 5.96e-05 AGATGAGGAC CCACGTGT CTTGATTTCT chrX:8238715-8238795 52 9.19e-05 TCTTTCCACC TCATGTGA CATGACTTAT chrV:14095114-14095194 70 9.19e-05 TTTGATTGTC CCATGTGA CCG chrV:3606569-3606649 39 9.19e-05 AGCATGACGG CCATGTGA TCATTTTGCA chrIV:10782143-10782223 12 9.19e-05 CGTGTACCGG CCATGTGA AGATGAAAGT chrX:2316342-2316422 10 9.19e-05 AGGAGACTC TCATGTGA CCTTTGCAAA chrII:7343089-7343169 60 9.19e-05 CAAATCCGCC CCATGTGA CAACTTCACG chrX:2802935-2803015 39 9.19e-05 TTCCGACAGC TCATGTGA TCTTTTTGGC chrV:12635385-12635465 52 9.19e-05 CTGTCCCTAT CCATGTGA CCCTTTTGCA chrX:14786910-14786990 46 9.19e-05 ATGTACCTGG CCATGTGA GATTTGTGTT chrIV:8028477-8028557 40 1.21e-04 GCGCATCTTG TCACGTGC CTCTTCACTC chrV:5425246-5425326 56 1.21e-04 GAGGCCATCG CCACGTGC GTTCTTATCA chrV:7413273-7413353 28 1.21e-04 CTGTTCAGTT TCACGTGC GGGGTTTGAG chrV:11803552-11803632 39 1.21e-04 AATCTGTCCC CCACGTGC AAGAAAATTC chrX:13247112-13247192 32 1.21e-04 TATCTTCTCA TCACGTGC TGGGATGCAA chrX:15081639-15081719 29 1.21e-04 TATCGCACAG TCACGTGC ACCACAATCA chrV:14539526-14539606 33 1.30e-04 AAAACACATA GCACGTGA TATTTACGAT chrX:13539903-13539983 47 1.30e-04 TCTTTAAGAG GCACGTGA CTCATGTTGA chrIV:11636466-11636546 47 1.30e-04 TTCTCTCGTG GCACGTGA ATGAGCGGCA chrV:3984284-3984364 37 1.74e-04 AGAAACAGAG TCTCGTGA TGACATCATC chrX:13663836-13663916 52 1.74e-04 TTATCACGTT TCTCGTGA CTTTTAAAGA chrIV:9875770-9875850 46 1.83e-04 ACCCTCATAA ACACGTGG TCTCTTCGTC chrII:8765300-8765380 9 1.83e-04 CACAACCT ACACGTGG GTTTTCATTA chrIII:4234766-4234846 51 1.83e-04 GGAAAAAAAC ACACGTGG GAATTTTTTG chrII:9606116-9606196 58 1.99e-04 AGAAAACTCT CCGCGTGA CTATGAACCG chrIV:17441396-17441476 22 2.36e-04 ATACACTTTA GCACGTGG TTTCGACGTC chrII:10294424-10294504 42 2.36e-04 CACGGAAGCG TCATGTGT AGCGATAATG chrV:16390827-16390907 28 2.36e-04 CCTCCGCCAG CCATGTGT GTCTCTCTCT chrX:6205049-6205129 17 2.51e-04 GAACAATCGC TCTCGTGG TTCAAATCAA chrIV:13253981-13254061 10 2.97e-04 AGTTCCCTG TCACATGA AACTTTGATC chrV:5693739-5693819 51 2.97e-04 ATAATGCCCA TCACATGA CAACATGTTT chrV:11046907-11046987 56 2.97e-04 ATTGTTGGCC ACACGTGT GAGAATAGTA chrII:13006491-13006571 68 2.97e-04 GACCTTCTTA TCACATGA TAACC chrIII:9666419-9666499 19 3.17e-04 TCCCAGACAG ACATGTGA CTCAAAACCA chrV:13358936-13359016 73 3.17e-04 GAAGAAAAAG ACATGTGA chrV:4895929-4896009 6 3.17e-04 GATGA ACATGTGA AGATGAACTT chrV:3610859-3610939 12 3.17e-04 GTCAGTTTCA ACATGTGA TGCGCACGAA chrIV:5764498-5764578 58 3.27e-04 AACCCTCTCT TCGCGTGG TATATTCCCC chrII:7339177-7339257 21 4.07e-04 TAATTACTCC TCCCGTGA TATCCAACTG chrX:13744710-13744790 56 4.07e-04 TTTTTGATCT TCCCGTGA GCGCACTTTT chrX:11536584-11536664 47 4.07e-04 ATCAAATTGC GCATGTGA CAGCAATTTT chrX:12518105-12518185 32 4.48e-04 GGCAAAACTC TCTTGTGA CTTCTTTATG chrII:8813815-8813895 68 4.48e-04 TCTCTTGAAA CCTTGTGA TATGT chrV:11798472-11798552 23 4.48e-04 AACGTCAACA TCTTGTGA ATGGCAGTAT chrII:10446425-10446505 4 4.48e-04 GTT CCTTGTGA TCATTTATTC chrX:17427967-17428047 22 4.48e-04 ATGCGGTGTA CCTTGTGA CTTTTAGAGG chrX:10302069-10302149 24 4.48e-04 AAGAAACATG CCTTGTGA TTCCCATTTT chrII:5874292-5874372 30 4.70e-04 TTTTCCTAAG TCACATGG TTTTACATGT chrV:9142432-9142512 48 4.70e-04 ATGACCTGAA TCACATGG AAACCCATAG chrIV:8036669-8036749 46 4.70e-04 TAAATACAGA TCACATGG TCTGCCATGT chrII:8822827-8822907 73 4.70e-04 AACGTGTTCC CCACATGG chrI:4804490-4804570 37 5.12e-04 TCTCTTCCTA CCGCGTGT ACTATGCCCT chrII:12615578-12615658 49 5.12e-04 AATAGTTCTG ACATGTGG TCAGCATGTG chrII:9807728-9807808 65 5.12e-04 ATATGATTTG TCGCGTGT GATTTGAG chrIII:5368346-5368426 42 5.40e-04 ACAAGAGTCT TCGTGTGA GCGTATAAAA chrII:8440961-8441041 21 6.45e-04 GTTAGACTGG CCTTGTGG GGGAATTTCT chrII:14851649-14851729 66 6.45e-04 TTTGGCCGGT TCACATGT TTAAAAG chrI:9837272-9837352 56 7.22e-04 ATACTGTAAA ACATGTGT ATTCTTAACT chrX:6646563-6646643 46 1.11e-03 GAAGACCTTA TAACGTGA CTGATAATAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCACGTGA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:4529047-4529127 2.3e-05 11_[+1]_61 chrX:10630237-10630317 2.3e-05 43_[+1]_29 chrX:8674653-8674733 2.3e-05 18_[+1]_54 chrX:9638999-9639079 2.3e-05 31_[+1]_41 chrIV:8463228-8463308 2.3e-05 14_[+1]_58 chrII:8741435-8741515 2.3e-05 42_[+1]_30 chrX:2075289-2075369 2.3e-05 25_[+1]_47 chrIV:9534486-9534566 2.3e-05 63_[+1]_9 chrI:10157479-10157559 2.3e-05 24_[+1]_48 chrIV:9668247-9668327 2.3e-05 60_[+1]_12 chrII:12625840-12625920 2.3e-05 46_[+1]_26 chrII:9161211-9161291 2.3e-05 58_[+1]_14 chrX:5135708-5135788 2.3e-05 36_[+1]_36 chrIV:13911093-13911173 2.3e-05 22_[+1]_50 chrV:12071609-12071689 3.8e-05 13_[+1]_59 chrIV:9672649-9672729 3.8e-05 37_[+1]_35 chrII:12622324-12622404 3.8e-05 53_[+1]_19 chrV:6505560-6505640 3.8e-05 45_[+1]_27 chrX:17426859-17426939 3.8e-05 13_[+1]_59 chrII:14841434-14841514 3.8e-05 41_[+1]_31 chrV:7415960-7416040 6e-05 11_[+1]_61 chrII:13609801-13609881 6e-05 17_[+1]_55 chrV:8026513-8026593 6e-05 48_[+1]_24 chrIII:7273027-7273107 6e-05 43_[+1]_29 chrV:12935127-12935207 6e-05 71_[+1]_1 chrX:10333496-10333576 6e-05 42_[+1]_30 chrX:13367085-13367165 6e-05 27_[+1]_45 chrV:9079297-9079377 6e-05 34_[+1]_38 chrX:8238715-8238795 9.2e-05 51_[+1]_21 chrV:14095114-14095194 9.2e-05 69_[+1]_3 chrV:3606569-3606649 9.2e-05 38_[+1]_34 chrIV:10782143-10782223 9.2e-05 11_[+1]_61 chrX:2316342-2316422 9.2e-05 9_[+1]_63 chrII:7343089-7343169 9.2e-05 59_[+1]_13 chrX:2802935-2803015 9.2e-05 38_[+1]_34 chrV:12635385-12635465 9.2e-05 51_[+1]_21 chrX:14786910-14786990 9.2e-05 45_[+1]_27 chrIV:8028477-8028557 0.00012 39_[+1]_33 chrV:5425246-5425326 0.00012 55_[+1]_17 chrV:7413273-7413353 0.00012 27_[+1]_45 chrV:11803552-11803632 0.00012 38_[+1]_34 chrX:13247112-13247192 0.00012 31_[+1]_41 chrX:15081639-15081719 0.00012 28_[+1]_44 chrV:14539526-14539606 0.00013 32_[+1]_40 chrX:13539903-13539983 0.00013 46_[+1]_26 chrIV:11636466-11636546 0.00013 46_[+1]_26 chrV:3984284-3984364 0.00017 36_[+1]_36 chrX:13663836-13663916 0.00017 51_[+1]_21 chrIV:9875770-9875850 0.00018 45_[+1]_27 chrII:8765300-8765380 0.00018 8_[+1]_64 chrIII:4234766-4234846 0.00018 50_[+1]_22 chrII:9606116-9606196 0.0002 57_[+1]_15 chrIV:17441396-17441476 0.00024 21_[+1]_51 chrII:10294424-10294504 0.00024 41_[+1]_31 chrV:16390827-16390907 0.00024 27_[+1]_45 chrX:6205049-6205129 0.00025 16_[+1]_56 chrIV:13253981-13254061 0.0003 9_[+1]_63 chrV:5693739-5693819 0.0003 50_[+1]_22 chrV:11046907-11046987 0.0003 55_[+1]_17 chrII:13006491-13006571 0.0003 67_[+1]_5 chrIII:9666419-9666499 0.00032 18_[+1]_54 chrV:13358936-13359016 0.00032 72_[+1] chrV:4895929-4896009 0.00032 5_[+1]_67 chrV:3610859-3610939 0.00032 11_[+1]_61 chrIV:5764498-5764578 0.00033 57_[+1]_15 chrII:7339177-7339257 0.00041 20_[+1]_52 chrX:13744710-13744790 0.00041 55_[+1]_17 chrX:11536584-11536664 0.00041 46_[+1]_26 chrX:12518105-12518185 0.00045 31_[+1]_41 chrII:8813815-8813895 0.00045 67_[+1]_5 chrV:11798472-11798552 0.00045 22_[+1]_50 chrII:10446425-10446505 0.00045 3_[+1]_69 chrX:17427967-17428047 0.00045 21_[+1]_51 chrX:10302069-10302149 0.00045 23_[+1]_49 chrII:5874292-5874372 0.00047 29_[+1]_43 chrV:9142432-9142512 0.00047 47_[+1]_25 chrIV:8036669-8036749 0.00047 45_[+1]_27 chrII:8822827-8822907 0.00047 72_[+1] chrI:4804490-4804570 0.00051 36_[+1]_36 chrII:12615578-12615658 0.00051 48_[+1]_24 chrII:9807728-9807808 0.00051 64_[+1]_8 chrIII:5368346-5368426 0.00054 41_[+1]_31 chrII:8440961-8441041 0.00065 20_[+1]_52 chrII:14851649-14851729 0.00065 65_[+1]_7 chrI:9837272-9837352 0.00072 55_[+1]_17 chrX:6646563-6646643 0.0011 45_[+1]_27 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCACGTGA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF YCACGTGA width=8 seqs=86 chrX:4529047-4529127 ( 12) CCACGTGA 1 chrX:10630237-10630317 ( 44) TCACGTGA 1 chrX:8674653-8674733 ( 19) TCACGTGA 1 chrX:9638999-9639079 ( 32) TCACGTGA 1 chrIV:8463228-8463308 ( 15) TCACGTGA 1 chrII:8741435-8741515 ( 43) CCACGTGA 1 chrX:2075289-2075369 ( 26) TCACGTGA 1 chrIV:9534486-9534566 ( 64) TCACGTGA 1 chrI:10157479-10157559 ( 25) CCACGTGA 1 chrIV:9668247-9668327 ( 61) CCACGTGA 1 chrII:12625840-12625920 ( 47) CCACGTGA 1 chrII:9161211-9161291 ( 59) CCACGTGA 1 chrX:5135708-5135788 ( 37) TCACGTGA 1 chrIV:13911093-13911173 ( 23) TCACGTGA 1 chrV:12071609-12071689 ( 14) CCACGTGG 1 chrIV:9672649-9672729 ( 38) TCACGTGG 1 chrII:12622324-12622404 ( 54) TCACGTGG 1 chrV:6505560-6505640 ( 46) TCACGTGG 1 chrX:17426859-17426939 ( 14) TCACGTGG 1 chrII:14841434-14841514 ( 42) CCACGTGG 1 chrV:7415960-7416040 ( 12) TCACGTGT 1 chrII:13609801-13609881 ( 18) CCACGTGT 1 chrV:8026513-8026593 ( 49) CCACGTGT 1 chrIII:7273027-7273107 ( 44) TCACGTGT 1 chrV:12935127-12935207 ( 72) TCACGTGT 1 chrX:10333496-10333576 ( 43) TCACGTGT 1 chrX:13367085-13367165 ( 28) TCACGTGT 1 chrV:9079297-9079377 ( 35) CCACGTGT 1 chrX:8238715-8238795 ( 52) TCATGTGA 1 chrV:14095114-14095194 ( 70) CCATGTGA 1 chrV:3606569-3606649 ( 39) CCATGTGA 1 chrIV:10782143-10782223 ( 12) CCATGTGA 1 chrX:2316342-2316422 ( 10) TCATGTGA 1 chrII:7343089-7343169 ( 60) CCATGTGA 1 chrX:2802935-2803015 ( 39) TCATGTGA 1 chrV:12635385-12635465 ( 52) CCATGTGA 1 chrX:14786910-14786990 ( 46) CCATGTGA 1 chrIV:8028477-8028557 ( 40) TCACGTGC 1 chrV:5425246-5425326 ( 56) CCACGTGC 1 chrV:7413273-7413353 ( 28) TCACGTGC 1 chrV:11803552-11803632 ( 39) CCACGTGC 1 chrX:13247112-13247192 ( 32) TCACGTGC 1 chrX:15081639-15081719 ( 29) TCACGTGC 1 chrV:14539526-14539606 ( 33) GCACGTGA 1 chrX:13539903-13539983 ( 47) GCACGTGA 1 chrIV:11636466-11636546 ( 47) GCACGTGA 1 chrV:3984284-3984364 ( 37) TCTCGTGA 1 chrX:13663836-13663916 ( 52) TCTCGTGA 1 chrIV:9875770-9875850 ( 46) ACACGTGG 1 chrII:8765300-8765380 ( 9) ACACGTGG 1 chrIII:4234766-4234846 ( 51) ACACGTGG 1 chrII:9606116-9606196 ( 58) CCGCGTGA 1 chrIV:17441396-17441476 ( 22) GCACGTGG 1 chrII:10294424-10294504 ( 42) TCATGTGT 1 chrV:16390827-16390907 ( 28) CCATGTGT 1 chrX:6205049-6205129 ( 17) TCTCGTGG 1 chrIV:13253981-13254061 ( 10) TCACATGA 1 chrV:5693739-5693819 ( 51) TCACATGA 1 chrV:11046907-11046987 ( 56) ACACGTGT 1 chrII:13006491-13006571 ( 68) TCACATGA 1 chrIII:9666419-9666499 ( 19) ACATGTGA 1 chrV:13358936-13359016 ( 73) ACATGTGA 1 chrV:4895929-4896009 ( 6) ACATGTGA 1 chrV:3610859-3610939 ( 12) ACATGTGA 1 chrIV:5764498-5764578 ( 58) TCGCGTGG 1 chrII:7339177-7339257 ( 21) TCCCGTGA 1 chrX:13744710-13744790 ( 56) TCCCGTGA 1 chrX:11536584-11536664 ( 47) GCATGTGA 1 chrX:12518105-12518185 ( 32) TCTTGTGA 1 chrII:8813815-8813895 ( 68) CCTTGTGA 1 chrV:11798472-11798552 ( 23) TCTTGTGA 1 chrII:10446425-10446505 ( 4) CCTTGTGA 1 chrX:17427967-17428047 ( 22) CCTTGTGA 1 chrX:10302069-10302149 ( 24) CCTTGTGA 1 chrII:5874292-5874372 ( 30) TCACATGG 1 chrV:9142432-9142512 ( 48) TCACATGG 1 chrIV:8036669-8036749 ( 46) TCACATGG 1 chrII:8822827-8822907 ( 73) CCACATGG 1 chrI:4804490-4804570 ( 37) CCGCGTGT 1 chrII:12615578-12615658 ( 49) ACATGTGG 1 chrII:9807728-9807808 ( 65) TCGCGTGT 1 chrIII:5368346-5368426 ( 42) TCGTGTGA 1 chrII:8440961-8441041 ( 21) CCTTGTGG 1 chrII:14851649-14851729 ( 66) TCACATGT 1 chrI:9837272-9837352 ( 56) ACATGTGT 1 chrX:6646563-6646643 ( 46) TAACGTGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCACGTGA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.73268 E= 6.8e-029 -137 68 -182 78 -469 228 -1307 -1307 141 -313 -182 -132 -1307 178 -1307 6 -170 -1307 215 -1307 -1307 -1307 -1307 178 -1307 -1307 229 -1307 86 -154 3 -74 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCACGTGA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 86 E= 6.8e-029 0.116279 0.325581 0.058140 0.500000 0.011628 0.988372 0.000000 0.000000 0.802326 0.023256 0.058140 0.116279 0.000000 0.697674 0.000000 0.302326 0.093023 0.000000 0.906977 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.546512 0.069767 0.209302 0.174419 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCACGTGA MEME-1 regular expression -------------------------------------------------------------------------------- [TC]CA[CT]GTG[AG] -------------------------------------------------------------------------------- Time 5.52 secs. ******************************************************************************** ******************************************************************************** MOTIF AGACGCAG MEME-2 width = 8 sites = 20 llr = 212 E-value = 9.8e-012 ******************************************************************************** -------------------------------------------------------------------------------- Motif AGACGCAG MEME-2 Description -------------------------------------------------------------------------------- Simplified A a:a:::a: pos.-specific C :1:a:a:: probability G 19::a::a matrix T :1:1:::: bits 2.3 ** * 2.1 *** * 1.8 ****** 1.6 ****** Relative 1.4 ******** Entropy 1.1 ******** (15.3 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel AGACGCAG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGACGCAG MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrII:5874292-5874372 48 9.78e-06 TTTTACATGT AGACGCAG AGACAATCGT chrIV:1859544-1859624 5 9.78e-06 TTTG AGACGCAG ACACCCCACT chrIV:9670132-9670212 27 9.78e-06 CAAAAATCAG AGACGCAG ACAGTCCTAG chrV:1627406-1627486 28 9.78e-06 TAGTATGCCG AGACGCAG GCATAGAAAT chrV:2122691-2122771 28 9.78e-06 CAGTGTTAAG AGACGCAG GCGGTTCAAC chrII:7090328-7090408 24 9.78e-06 CGAGAAAGAG AGACGCAG GCTGACTGCA chrII:9586967-9587047 22 9.78e-06 TTGTAAGAAG AGACGCAG AGAATAAAGA chrV:903633-903713 36 9.78e-06 GTCTGGTGAG AGACGCAG ACAGCGAGGG chrII:9752458-9752538 7 9.78e-06 ATAGAG AGACGCAG AGAAGTAGGA chrII:5619434-5619514 36 9.78e-06 TCGAGACTGG AGACGCAG GCATAACTAG chrV:2212097-2212177 48 9.78e-06 ACGTGCCGAG AGACGCAG ACTGTTGAAG chrIV:5765818-5765898 24 9.78e-06 CGAGAACAAG AGACGCAG ACACAATCGG chrII:3743835-3743915 48 9.78e-06 TGTCCACTGG AGACGCAG ACAGTTGGTG chrV:2259922-2260002 49 9.78e-06 GGTTGTTCAG AGACGCAG GTAGACAAAG chrIV:6248633-6248713 27 9.78e-06 AGTAATTGAG AGACGCAG AGATCGAAGA chrII:6448880-6448960 45 2.36e-05 TTTCGTCGAA ATACGCAG ACGGAAAAAG chrX:8992009-8992089 62 2.36e-05 TGTTTAGAAG ATACGCAG GAGTAGAAAG chrX:5135708-5135788 52 3.02e-05 TGAATTGGAA GGACGCAG AATTGCGCTG chrV:5272732-5272812 6 3.99e-05 AATTC ACACGCAG GGTCATTGTC chrV:9079297-9079377 19 5.39e-05 GTCATAAGAC AGATGCAG ATGAGGACCC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGACGCAG MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:5874292-5874372 9.8e-06 47_[+2]_25 chrIV:1859544-1859624 9.8e-06 4_[+2]_68 chrIV:9670132-9670212 9.8e-06 26_[+2]_46 chrV:1627406-1627486 9.8e-06 27_[+2]_45 chrV:2122691-2122771 9.8e-06 27_[+2]_45 chrII:7090328-7090408 9.8e-06 23_[+2]_49 chrII:9586967-9587047 9.8e-06 21_[+2]_51 chrV:903633-903713 9.8e-06 35_[+2]_37 chrII:9752458-9752538 9.8e-06 6_[+2]_66 chrII:5619434-5619514 9.8e-06 35_[+2]_37 chrV:2212097-2212177 9.8e-06 47_[+2]_25 chrIV:5765818-5765898 9.8e-06 23_[+2]_49 chrII:3743835-3743915 9.8e-06 47_[+2]_25 chrV:2259922-2260002 9.8e-06 48_[+2]_24 chrIV:6248633-6248713 9.8e-06 26_[+2]_46 chrII:6448880-6448960 2.4e-05 44_[+2]_28 chrX:8992009-8992089 2.4e-05 61_[+2]_11 chrX:5135708-5135788 3e-05 51_[+2]_21 chrV:5272732-5272812 4e-05 5_[+2]_67 chrV:9079297-9079377 5.4e-05 18_[+2]_54 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGACGCAG MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AGACGCAG width=8 seqs=20 chrII:5874292-5874372 ( 48) AGACGCAG 1 chrIV:1859544-1859624 ( 5) AGACGCAG 1 chrIV:9670132-9670212 ( 27) AGACGCAG 1 chrV:1627406-1627486 ( 28) AGACGCAG 1 chrV:2122691-2122771 ( 28) AGACGCAG 1 chrII:7090328-7090408 ( 24) AGACGCAG 1 chrII:9586967-9587047 ( 22) AGACGCAG 1 chrV:903633-903713 ( 36) AGACGCAG 1 chrII:9752458-9752538 ( 7) AGACGCAG 1 chrII:5619434-5619514 ( 36) AGACGCAG 1 chrV:2212097-2212177 ( 48) AGACGCAG 1 chrIV:5765818-5765898 ( 24) AGACGCAG 1 chrII:3743835-3743915 ( 48) AGACGCAG 1 chrV:2259922-2260002 ( 49) AGACGCAG 1 chrIV:6248633-6248713 ( 27) AGACGCAG 1 chrII:6448880-6448960 ( 45) ATACGCAG 1 chrX:8992009-8992089 ( 62) ATACGCAG 1 chrX:5135708-5135788 ( 52) GGACGCAG 1 chrV:5272732-5272812 ( 6) ACACGCAG 1 chrV:9079297-9079377 ( 19) AGATGCAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGACGCAG MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.0839 E= 9.8e-012 165 -1097 -203 -1097 -1097 -202 205 -154 173 -1097 -1097 -1097 -1097 223 -1097 -253 -1097 -1097 229 -1097 -1097 230 -1097 -1097 173 -1097 -1097 -1097 -1097 -1097 229 -1097 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGACGCAG MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 20 E= 9.8e-012 0.950000 0.000000 0.050000 0.000000 0.000000 0.050000 0.850000 0.100000 1.000000 0.000000 0.000000 0.000000 0.000000 0.950000 0.000000 0.050000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGACGCAG MEME-2 regular expression -------------------------------------------------------------------------------- AGACGCAG -------------------------------------------------------------------------------- Time 9.09 secs. ******************************************************************************** ******************************************************************************** MOTIF TCTGCGTC MEME-3 width = 8 sites = 14 llr = 140 E-value = 1.4e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif TCTGCGTC MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C :a:19::9 probability G 1:19:a:: matrix T 9:9:1:a1 bits 2.3 * * 2.1 * * 1.8 * * ** 1.6 * ***** Relative 1.4 ******** Entropy 1.1 ******** (14.5 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TCTGCGTC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTGCGTC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrV:3505904-3505984 12 8.57e-06 TGTATCGATC TCTGCGTC TCTTGGAGGA chrV:13782362-13782442 43 8.57e-06 TACCACCACT TCTGCGTC TCTCCATCTC chrV:6323128-6323208 26 8.57e-06 AAAATGTCCT TCTGCGTC TCTTGATTAC chrIV:15901285-15901365 36 8.57e-06 TCAAAAAATG TCTGCGTC TCACCAAATT chrV:2192300-2192380 28 8.57e-06 TGTCGATGTG TCTGCGTC TCTTATGTAC chrV:464956-465036 40 8.57e-06 TCTCGTAGAG TCTGCGTC TTCTTTTAAA chrI:13533998-13534078 40 8.57e-06 GTATGACCTC TCTGCGTC TCTCCAAACT chrV:11531191-11531271 42 3.31e-05 AACCTCCGTG TCTGTGTC TGTTTTGAAA chrIII:8923504-8923584 49 3.31e-05 TTTTGGATGC TCTGCGTT TCTGCATTTC chrV:8026513-8026593 41 3.31e-05 TGCAGTTATC TCTGTGTC CCACGTGTAA chrV:2236028-2236108 44 3.31e-05 CTCCCAAATT TCTGCGTT TCTCTATTCC chrII:6891989-6892069 46 4.52e-05 TTGGGATTTC GCTGCGTC AACTGTCGCA chrI:7597215-7597295 65 4.52e-05 AGTGTAGTAA TCGGCGTC AATCGATT chrV:2244902-2244982 33 5.37e-05 TCCTTTTTCT TCTCCGTC TCTAGCATAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTGCGTC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:3505904-3505984 8.6e-06 11_[+3]_61 chrV:13782362-13782442 8.6e-06 42_[+3]_30 chrV:6323128-6323208 8.6e-06 25_[+3]_47 chrIV:15901285-15901365 8.6e-06 35_[+3]_37 chrV:2192300-2192380 8.6e-06 27_[+3]_45 chrV:464956-465036 8.6e-06 39_[+3]_33 chrI:13533998-13534078 8.6e-06 39_[+3]_33 chrV:11531191-11531271 3.3e-05 41_[+3]_31 chrIII:8923504-8923584 3.3e-05 48_[+3]_24 chrV:8026513-8026593 3.3e-05 40_[+3]_32 chrV:2236028-2236108 3.3e-05 43_[+3]_29 chrII:6891989-6892069 4.5e-05 45_[+3]_27 chrI:7597215-7597295 4.5e-05 64_[+3]_8 chrV:2244902-2244982 5.4e-05 32_[+3]_40 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTGCGTC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TCTGCGTC width=8 seqs=14 chrV:3505904-3505984 ( 12) TCTGCGTC 1 chrV:13782362-13782442 ( 43) TCTGCGTC 1 chrV:6323128-6323208 ( 26) TCTGCGTC 1 chrIV:15901285-15901365 ( 36) TCTGCGTC 1 chrV:2192300-2192380 ( 28) TCTGCGTC 1 chrV:464956-465036 ( 40) TCTGCGTC 1 chrI:13533998-13534078 ( 40) TCTGCGTC 1 chrV:11531191-11531271 ( 42) TCTGTGTC 1 chrIII:8923504-8923584 ( 49) TCTGCGTT 1 chrV:8026513-8026593 ( 41) TCTGTGTC 1 chrV:2236028-2236108 ( 44) TCTGCGTT 1 chrII:6891989-6892069 ( 46) GCTGCGTC 1 chrI:7597215-7597295 ( 65) TCGGCGTC 1 chrV:2244902-2244982 ( 33) TCTCCGTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTGCGTC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.9532 E= 1.4e+000 -1045 -1045 -152 168 -1045 230 -1045 -1045 -1045 -1045 -152 168 -1045 -151 218 -1045 -1045 208 -1045 -102 -1045 -1045 229 -1045 -1045 -1045 -1045 178 -1045 208 -1045 -102 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTGCGTC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 14 E= 1.4e+000 0.000000 0.000000 0.071429 0.928571 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.071429 0.928571 0.000000 0.071429 0.928571 0.000000 0.000000 0.857143 0.000000 0.142857 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.857143 0.000000 0.142857 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTGCGTC MEME-3 regular expression -------------------------------------------------------------------------------- TCTGCGTC -------------------------------------------------------------------------------- Time 13.27 secs. ******************************************************************************** ******************************************************************************** MOTIF ACTACAVT MEME-4 width = 8 sites = 29 llr = 249 E-value = 1.9e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif ACTACAVT MEME-4 Description -------------------------------------------------------------------------------- Simplified A a::a:93: pos.-specific C :a::8:4: probability G ::::212: matrix T ::a:::1a bits 2.3 * 2.1 * 1.8 **** * 1.6 ***** * Relative 1.4 ***** * Entropy 1.1 ****** * (12.4 bits) 0.9 ****** * 0.7 ****** * 0.5 ****** * 0.2 ******** 0.0 -------- Multilevel ACTACACT consensus G A sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACTACAVT MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrII:12425936-12426016 72 1.94e-05 GACAGAGAAG ACTACACT T chrII:4881926-4882006 7 1.94e-05 ACGATG ACTACACT TTATGATTTC chrV:6365788-6365868 65 1.94e-05 CACAAAAAGG ACTACACT GTGCGCAA chrV:4908714-4908794 73 1.94e-05 AATACTACAA ACTACACT chrX:17714507-17714587 12 1.94e-05 CTCTCAACTG ACTACACT GTAACCAATT chrV:9144067-9144147 36 1.94e-05 TTGTCTTATC ACTACACT GTTGTTCAAA chrI:11683468-11683548 11 1.94e-05 ACCAAACAAA ACTACACT CTACTCTACA chrI:12937797-12937877 5 1.94e-05 CGTG ACTACACT GTAGTCAATG chrIV:15901285-15901365 9 1.94e-05 CGAGGTAC ACTACACT TTTTTTAGTT chrII:15111526-15111606 44 3.89e-05 TAGCCAACTG ACTACAGT GTTCCGAAAA chrX:17426859-17426939 54 3.89e-05 CAGAGAAAAA ACTACAGT TTACTCATCA chrV:19955337-19955417 29 6.78e-05 ACTCTAGGAG ACTACAAT GTAGCCTCCC chrV:3970562-3970642 2 6.78e-05 A ACTACAAT TTTCACAATT chrII:6448880-6448960 73 6.78e-05 AAAATACCTG ACTACAAT chrII:9109269-9109349 25 6.78e-05 GAACGAGCAG ACTACAAT GTAGTCTTTG chrII:5142299-5142379 58 6.78e-05 TACTCGCAAG ACTACAAT GTATTCAGGA chrII:7252110-7252190 10 6.78e-05 ACATTGTGG ACTACAAT CAATGACTGC chrX:4490509-4490589 19 1.00e-04 CGCGTGCCAA ACTAGACT CTCTCACACT chrX:12519111-12519191 18 1.00e-04 CAACATATCG ACTAGACT GTGGGCTGGG chrIV:9675084-9675164 44 1.34e-04 AATACTACAA ACTAGAGT ATTGCCGTGT chrV:13358936-13359016 1 1.34e-04 . ACTACGGT AACTGTTATT chrIV:9674009-9674089 21 1.34e-04 GGTCAAGAAG ACTAGAGT TTGGCAAGCG chrI:7597215-7597295 50 1.34e-04 CTTTGTGTTC ACTAGAGT GTAGTAATCG chrII:14818514-14818594 68 1.34e-04 TCACAGACCA ACTAGAGT TTAGT chrIV:5778466-5778546 37 1.82e-04 GTCGAGGCAC ACTACGAT GACGTTCGGA chrV:4895929-4896009 51 1.82e-04 CTACAAAGCG ACTACGAT AACTACAAGC chrV:16779094-16779174 8 1.82e-04 CTTGAAA ACTACGAT ATCGCCTGGT chrV:13782362-13782442 19 2.10e-04 TGTAACCCCC ACTACATT CTAGCCTACC chrV:2192300-2192380 8 2.10e-04 ACGAGAG ACTACATT GTTGTCGATG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACTACAVT MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:12425936-12426016 1.9e-05 71_[+4]_1 chrII:4881926-4882006 1.9e-05 6_[+4]_66 chrV:6365788-6365868 1.9e-05 64_[+4]_8 chrV:4908714-4908794 1.9e-05 72_[+4] chrX:17714507-17714587 1.9e-05 11_[+4]_61 chrV:9144067-9144147 1.9e-05 35_[+4]_37 chrI:11683468-11683548 1.9e-05 10_[+4]_62 chrI:12937797-12937877 1.9e-05 4_[+4]_68 chrIV:15901285-15901365 1.9e-05 8_[+4]_64 chrII:15111526-15111606 3.9e-05 43_[+4]_29 chrX:17426859-17426939 3.9e-05 53_[+4]_19 chrV:19955337-19955417 6.8e-05 28_[+4]_44 chrV:3970562-3970642 6.8e-05 1_[+4]_71 chrII:6448880-6448960 6.8e-05 72_[+4] chrII:9109269-9109349 6.8e-05 24_[+4]_48 chrII:5142299-5142379 6.8e-05 57_[+4]_15 chrII:7252110-7252190 6.8e-05 9_[+4]_63 chrX:4490509-4490589 0.0001 18_[+4]_54 chrX:12519111-12519191 0.0001 17_[+4]_55 chrIV:9675084-9675164 0.00013 43_[+4]_29 chrV:13358936-13359016 0.00013 [+4]_72 chrIV:9674009-9674089 0.00013 20_[+4]_52 chrI:7597215-7597295 0.00013 49_[+4]_23 chrII:14818514-14818594 0.00013 67_[+4]_5 chrIV:5778466-5778546 0.00018 36_[+4]_36 chrV:4895929-4896009 0.00018 50_[+4]_22 chrV:16779094-16779174 0.00018 7_[+4]_65 chrV:13782362-13782442 0.00021 18_[+4]_54 chrV:2192300-2192380 0.00021 7_[+4]_65 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACTACAVT MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ACTACAVT width=8 seqs=29 chrII:12425936-12426016 ( 72) ACTACACT 1 chrII:4881926-4882006 ( 7) ACTACACT 1 chrV:6365788-6365868 ( 65) ACTACACT 1 chrV:4908714-4908794 ( 73) ACTACACT 1 chrX:17714507-17714587 ( 12) ACTACACT 1 chrV:9144067-9144147 ( 36) ACTACACT 1 chrI:11683468-11683548 ( 11) ACTACACT 1 chrI:12937797-12937877 ( 5) ACTACACT 1 chrIV:15901285-15901365 ( 9) ACTACACT 1 chrII:15111526-15111606 ( 44) ACTACAGT 1 chrX:17426859-17426939 ( 54) ACTACAGT 1 chrV:19955337-19955417 ( 29) ACTACAAT 1 chrV:3970562-3970642 ( 2) ACTACAAT 1 chrII:6448880-6448960 ( 73) ACTACAAT 1 chrII:9109269-9109349 ( 25) ACTACAAT 1 chrII:5142299-5142379 ( 58) ACTACAAT 1 chrII:7252110-7252190 ( 10) ACTACAAT 1 chrX:4490509-4490589 ( 19) ACTAGACT 1 chrX:12519111-12519191 ( 18) ACTAGACT 1 chrIV:9675084-9675164 ( 44) ACTAGAGT 1 chrV:13358936-13359016 ( 1) ACTACGGT 1 chrIV:9674009-9674089 ( 21) ACTAGAGT 1 chrI:7597215-7597295 ( 50) ACTAGAGT 1 chrII:14818514-14818594 ( 68) ACTAGAGT 1 chrIV:5778466-5778546 ( 37) ACTACGAT 1 chrV:4895929-4896009 ( 51) ACTACGAT 1 chrV:16779094-16779174 ( 8) ACTACGAT 1 chrV:13782362-13782442 ( 19) ACTACATT 1 chrV:2192300-2192380 ( 8) ACTACATT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACTACAVT MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.5458 E= 1.9e-001 173 -1150 -1150 -1150 -1150 230 -1150 -1150 -1150 -1150 -1150 178 173 -1150 -1150 -1150 -1150 196 1 -1150 151 -1150 -57 -1150 4 90 24 -207 -1150 -1150 -1150 178 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACTACAVT MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 29 E= 1.9e-001 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.793103 0.206897 0.000000 0.862069 0.000000 0.137931 0.000000 0.310345 0.379310 0.241379 0.068966 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACTACAVT MEME-4 regular expression -------------------------------------------------------------------------------- ACTA[CG]A[CAG]T -------------------------------------------------------------------------------- Time 16.84 secs. ******************************************************************************** ******************************************************************************** MOTIF TCTYTYYC MEME-5 width = 8 sites = 44 llr = 342 E-value = 5.2e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif TCTYTYYC MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C :6:4:64a probability G :2:::::: matrix T a2a6a45: bits 2.3 * 2.1 * 1.8 * * * * 1.6 * * * * Relative 1.4 * * * * Entropy 1.1 * * ** * (11.2 bits) 0.9 * **** * 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TCTTTCTC consensus G C TC sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTYTYYC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrV:8026513-8026593 8 1.20e-05 ATGTCTA TCTTTCCC GCACACGTGC chrI:6574675-6574755 61 1.20e-05 ctttccgtca tcttTCCC GCATTGAATA chrI:9837272-9837352 14 1.20e-05 TTTTCGTTAT TCTTTCCC TGTTGACTTT chrX:13113606-13113686 37 3.76e-05 CAAATTGTTA TCTTTCTC TAAAATGACC chrII:9573628-9573708 53 3.76e-05 GTtctcactg tctttctc tctctacctc chrV:4895929-4896009 23 3.76e-05 AAGATGAACT TCTTTCTC TGAGTACAAC chrX:17714507-17714587 53 3.76e-05 CAGTCCACTG TCTTTCTC GCGAGTCGAT chrV:9134095-9134175 59 3.76e-05 TGATAATTTT TCTTTCTC TGAATCTCTA chrV:2244902-2244982 4 4.96e-05 TTA TCTCTCTC CATTTTCAAT chrI:9842474-9842554 46 4.96e-05 CCATTCCCCC TCTCTCTC TTTTGCGCCG chrV:16390827-16390907 39 4.96e-05 CATGTGTGTC TCTCTCTC TCTAGGCGGT chrIV:13253981-13254061 45 6.67e-05 GCTCGTGAAC TCTTTTCC CATCAAACAA chrII:13609801-13609881 40 6.67e-05 GTCTCTTTTC TCTTTTCC CGACGGGGGG chrX:17508298-17508378 51 6.67e-05 CAATTCATCT TCTTTTCC GAATTCCAAA chrX:4490509-4490589 36 6.67e-05 TCTCTCACAC TCTTTTCC TCTCCAATTT chrX:14786910-14786990 66 6.67e-05 TTTGTGTTTT TCTTTTCC ATCACCT chrII:14841434-14841514 31 6.67e-05 AGATCAGACA TCTTTTCC TTCCCACGTG chrIV:17441396-17441476 67 7.89e-05 AGGTTTTCTT TGTTTCCC TCTATA chrI:4804490-4804570 27 9.09e-05 AGCTGTCACT TCTCTTCC TACCGCGTGT chrX:17473040-17473120 37 9.09e-05 GACAGCTGAC TCTCTTCC AATTTCTTAT chrIV:15395463-15395543 45 9.09e-05 AGAAACTTTT TCTCTTCC CCACTGATAA chrII:9344126-9344206 20 1.24e-04 CACTTCATAT TGTCTCCC GTGTGTTCAA chrV:6503340-6503420 36 1.24e-04 TACTCGTTTT TCTTTTTC AGTAATGCTG chrII:9656358-9656438 10 1.24e-04 CTCTGCGTA TCTTTTTC CCGATACAAG chrII:9800422-9800502 34 1.41e-04 CTCACTCGGG TGTTTCTC GGCGCAACAA chrIII:7273027-7273107 19 1.88e-04 ATAGAAACAC TTTTTCCC AGAGGAGATG chrV:2236028-2236108 22 1.88e-04 CTATTTCCAT TGTCTCTC TACTCTCCCA chrV:2192300-2192380 51 1.88e-04 TGTACCTAGT TGTCTCTC ACCGCCCTCG chrIV:10971987-10972067 24 2.42e-04 GAACAGACCT TTTTTCTC TCTATTTTTC chrIII:4240314-4240394 52 2.42e-04 TTGATAGTAG TTTTTCTC TTTTTTTTCG chrIV:9063589-9063669 56 2.42e-04 CGTAATTTCA TGTTTTCC TAGAATTTCT chrIV:8103289-8103369 51 2.42e-04 GTAGAACCGT TTTTTCTC TGTTTTCAGT chrIII:4412282-4412362 8 2.71e-04 ttctcta tttctctc gctttctatt chrIII:7897919-7897999 40 2.71e-04 ACTGGTTTGA TGTCTTCC ATGTTTGTAC chrII:7339177-7339257 1 2.71e-04 . TTTCTCTC ATTAATTACT chrIII:9666419-9666499 66 2.71e-04 CTGCTGAGAC TGTCTTCC CTGTCTG chrII:13006491-13006571 43 2.71e-04 TTTGACATCT TTTCTCTC TATTTCTGAC chrV:1627406-1627486 8 2.96e-04 TGCTGCT TGTTTTTC GCTAGTATGC chrII:14851649-14851729 27 2.96e-04 TTTTTCCTAT TGTTTTTC AAAATGATAC chrIV:9516966-9517046 59 3.37e-04 TGTTGATATC TTTTTTCC TATCTTTCAT chrX:13744710-13744790 73 4.32e-04 AGCGCACTTT TTTCTTTC chrII:13616166-13616246 8 4.32e-04 TTAGTGA TCTTTCAC TTCAAGATAA chrI:7759208-7759288 6 4.44e-04 ACAAT TCTCTCAC CCCTCCTGAT chrII:11838489-11838569 17 4.57e-04 TGATCGTCAA TCTTTCGC AGGGTAAATT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTYTYYC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:8026513-8026593 1.2e-05 7_[+5]_65 chrI:6574675-6574755 1.2e-05 60_[+5]_12 chrI:9837272-9837352 1.2e-05 13_[+5]_59 chrX:13113606-13113686 3.8e-05 36_[+5]_36 chrII:9573628-9573708 3.8e-05 52_[+5]_20 chrV:4895929-4896009 3.8e-05 22_[+5]_50 chrX:17714507-17714587 3.8e-05 52_[+5]_20 chrV:9134095-9134175 3.8e-05 58_[+5]_14 chrV:2244902-2244982 5e-05 3_[+5]_69 chrI:9842474-9842554 5e-05 45_[+5]_27 chrV:16390827-16390907 5e-05 38_[+5]_34 chrIV:13253981-13254061 6.7e-05 44_[+5]_28 chrII:13609801-13609881 6.7e-05 39_[+5]_33 chrX:17508298-17508378 6.7e-05 50_[+5]_22 chrX:4490509-4490589 6.7e-05 35_[+5]_37 chrX:14786910-14786990 6.7e-05 65_[+5]_7 chrII:14841434-14841514 6.7e-05 30_[+5]_42 chrIV:17441396-17441476 7.9e-05 66_[+5]_6 chrI:4804490-4804570 9.1e-05 26_[+5]_46 chrX:17473040-17473120 9.1e-05 36_[+5]_36 chrIV:15395463-15395543 9.1e-05 44_[+5]_28 chrII:9344126-9344206 0.00012 19_[+5]_53 chrV:6503340-6503420 0.00012 35_[+5]_37 chrII:9656358-9656438 0.00012 9_[+5]_63 chrII:9800422-9800502 0.00014 33_[+5]_39 chrIII:7273027-7273107 0.00019 18_[+5]_54 chrV:2236028-2236108 0.00019 21_[+5]_51 chrV:2192300-2192380 0.00019 50_[+5]_22 chrIV:10971987-10972067 0.00024 23_[+5]_49 chrIII:4240314-4240394 0.00024 51_[+5]_21 chrIV:9063589-9063669 0.00024 55_[+5]_17 chrIV:8103289-8103369 0.00024 50_[+5]_22 chrIII:4412282-4412362 0.00027 7_[+5]_65 chrIII:7897919-7897999 0.00027 39_[+5]_33 chrII:7339177-7339257 0.00027 [+5]_72 chrIII:9666419-9666499 0.00027 65_[+5]_7 chrII:13006491-13006571 0.00027 42_[+5]_30 chrV:1627406-1627486 0.0003 7_[+5]_65 chrII:14851649-14851729 0.0003 26_[+5]_46 chrIV:9516966-9517046 0.00034 58_[+5]_14 chrX:13744710-13744790 0.00043 72_[+5] chrII:13616166-13616246 0.00043 7_[+5]_65 chrI:7759208-7759288 0.00044 5_[+5]_67 chrII:11838489-11838569 0.00046 16_[+5]_56 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTYTYYC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TCTYTYYC width=8 seqs=44 chrV:8026513-8026593 ( 8) TCTTTCCC 1 chrI:6574675-6574755 ( 61) TCTTTCCC 1 chrI:9837272-9837352 ( 14) TCTTTCCC 1 chrX:13113606-13113686 ( 37) TCTTTCTC 1 chrII:9573628-9573708 ( 53) TCTTTCTC 1 chrV:4895929-4896009 ( 23) TCTTTCTC 1 chrX:17714507-17714587 ( 53) TCTTTCTC 1 chrV:9134095-9134175 ( 59) TCTTTCTC 1 chrV:2244902-2244982 ( 4) TCTCTCTC 1 chrI:9842474-9842554 ( 46) TCTCTCTC 1 chrV:16390827-16390907 ( 39) TCTCTCTC 1 chrIV:13253981-13254061 ( 45) TCTTTTCC 1 chrII:13609801-13609881 ( 40) TCTTTTCC 1 chrX:17508298-17508378 ( 51) TCTTTTCC 1 chrX:4490509-4490589 ( 36) TCTTTTCC 1 chrX:14786910-14786990 ( 66) TCTTTTCC 1 chrII:14841434-14841514 ( 31) TCTTTTCC 1 chrIV:17441396-17441476 ( 67) TGTTTCCC 1 chrI:4804490-4804570 ( 27) TCTCTTCC 1 chrX:17473040-17473120 ( 37) TCTCTTCC 1 chrIV:15395463-15395543 ( 45) TCTCTTCC 1 chrII:9344126-9344206 ( 20) TGTCTCCC 1 chrV:6503340-6503420 ( 36) TCTTTTTC 1 chrII:9656358-9656438 ( 10) TCTTTTTC 1 chrII:9800422-9800502 ( 34) TGTTTCTC 1 chrIII:7273027-7273107 ( 19) TTTTTCCC 1 chrV:2236028-2236108 ( 22) TGTCTCTC 1 chrV:2192300-2192380 ( 51) TGTCTCTC 1 chrIV:10971987-10972067 ( 24) TTTTTCTC 1 chrIII:4240314-4240394 ( 52) TTTTTCTC 1 chrIV:9063589-9063669 ( 56) TGTTTTCC 1 chrIV:8103289-8103369 ( 51) TTTTTCTC 1 chrIII:4412282-4412362 ( 8) TTTCTCTC 1 chrIII:7897919-7897999 ( 40) TGTCTTCC 1 chrII:7339177-7339257 ( 1) TTTCTCTC 1 chrIII:9666419-9666499 ( 66) TGTCTTCC 1 chrII:13006491-13006571 ( 43) TTTCTCTC 1 chrV:1627406-1627486 ( 8) TGTTTTTC 1 chrII:14851649-14851729 ( 27) TGTTTTTC 1 chrIV:9516966-9517046 ( 59) TTTTTTCC 1 chrX:13744710-13744790 ( 73) TTTCTTTC 1 chrII:13616166-13616246 ( 8) TCTTTCAC 1 chrI:7759208-7759288 ( 6) TCTCTCAC 1 chrII:11838489-11838569 ( 17) TCTTTCGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTYTYYC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.72094 E= 5.2e+000 -1210 -1210 -1210 178 -1210 148 15 -51 -1210 -1210 -1210 178 -1210 84 -1210 113 -1210 -1210 -1210 178 -1210 154 -1210 49 -273 109 -317 78 -1210 230 -1210 -1210 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTYTYYC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 44 E= 5.2e+000 0.000000 0.000000 0.000000 1.000000 0.000000 0.568182 0.227273 0.204545 0.000000 0.000000 0.000000 1.000000 0.000000 0.363636 0.000000 0.636364 0.000000 0.000000 0.000000 1.000000 0.000000 0.590909 0.000000 0.409091 0.045455 0.431818 0.022727 0.500000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTYTYYC MEME-5 regular expression -------------------------------------------------------------------------------- T[CGT]T[TC]T[CT][TC]C -------------------------------------------------------------------------------- Time 20.31 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:18901716-18901796 7.29e-01 80 chrIII:4234766-4234846 2.35e-01 80 chrII:14818514-14818594 1.38e-01 80 chrIV:6248633-6248713 9.41e-03 26_[+2(9.78e-06)]_46 chrV:2259922-2260002 1.23e-01 48_[+2(9.78e-06)]_24 chrI:13533998-13534078 6.27e-04 39_[+3(8.57e-06)]_33 chrX:8992009-8992089 1.55e-02 61_[+2(2.36e-05)]_11 chrI:7597215-7597295 1.02e-02 64_[+3(4.52e-05)]_8 chrII:11236407-11236487 3.16e-01 80 chrX:15081639-15081719 4.02e-03 80 chrII:9807728-9807808 5.51e-01 80 chrII:7252110-7252190 1.51e-01 9_[+4(6.78e-05)]_63 chrX:4569423-4569503 2.00e-01 80 chrV:464956-465036 6.53e-03 39_[+3(8.57e-06)]_33 chrIV:9674009-9674089 1.09e-01 80 chrX:17504648-17504728 8.78e-01 80 chrX:6122193-6122273 8.53e-01 80 chrII:3743835-3743915 1.25e-03 47_[+2(9.78e-06)]_25 chrV:2192300-2192380 8.00e-05 27_[+3(8.57e-06)]_45 chrII:5142299-5142379 1.36e-01 57_[+4(6.78e-05)]_15 chrII:14841434-14841514 1.80e-03 30_[+5(6.67e-05)]_3_[+1(3.79e-05)]_\ 31 chrV:15168305-15168385 5.06e-01 80 chrV:2236028-2236108 1.13e-02 43_[+3(3.31e-05)]_29 chrV:211923-212003 9.60e-01 80 chrIV:11636466-11636546 9.82e-02 80 chrIV:5750072-5750152 9.48e-01 80 chrX:17426859-17426939 1.83e-03 13_[+1(3.79e-05)]_32_[+4(3.89e-05)]_\ 19 chrII:6887742-6887822 3.83e-02 [+3(7.12e-05)]_72 chrII:15111526-15111606 2.18e-01 43_[+4(3.89e-05)]_29 chrIV:15901285-15901365 6.04e-04 8_[+4(1.94e-05)]_19_[+3(8.57e-06)]_\ 37 chrII:9800422-9800502 5.05e-02 80 chrIV:13911093-13911173 2.71e-02 22_[+1(2.26e-05)]_50 chrI:9837272-9837352 1.14e-03 13_[+5(1.20e-05)]_59 chrIII:5368346-5368426 2.46e-01 80 chrII:14851649-14851729 1.62e-01 80 chrV:6505560-6505640 3.36e-02 45_[+1(3.79e-05)]_27 chrIII:12005210-12005290 4.57e-01 80 chrIV:8103289-8103369 1.81e-02 80 chrX:12167840-12167920 1.91e-01 80 chrII:12622324-12622404 1.19e-01 53_[+1(3.79e-05)]_19 chrX:5135708-5135788 3.09e-04 36_[+1(2.26e-05)]_7_[+2(3.02e-05)]_\ 21 chrV:9079297-9079377 7.15e-03 18_[+2(5.39e-05)]_8_[+1(5.96e-05)]_\ 38 chrIV:15385333-15385413 2.28e-01 80 chrII:9656358-9656438 4.71e-03 80 chrV:6323128-6323208 8.43e-03 25_[+3(8.57e-06)]_47 chrX:13367085-13367165 2.89e-02 27_[+1(5.96e-05)]_45 chrII:8765300-8765380 5.74e-02 80 chrIII:11262180-11262260 1.00e+00 80 chrIV:5765818-5765898 7.53e-02 23_[+2(9.78e-06)]_49 chrX:10333496-10333576 5.66e-02 42_[+1(5.96e-05)]_30 chrV:9134095-9134175 7.10e-02 58_[+5(3.76e-05)]_14 chrV:7089379-7089459 2.52e-01 80 chrV:7686357-7686437 6.79e-01 80 chrV:17014226-17014306 5.37e-01 80 chrIV:14612217-14612297 5.80e-01 80 chrI:12937797-12937877 6.79e-02 4_[+4(1.94e-05)]_68 chrI:11683468-11683548 1.36e-01 10_[+4(1.94e-05)]_62 chrV:11800643-11800723 6.66e-01 80 chrX:14786910-14786990 1.00e-03 45_[+1(9.19e-05)]_12_[+5(6.67e-05)]_\ 7 chrII:12615578-12615658 5.49e-01 80 chrII:9109269-9109349 1.48e-01 24_[+4(6.78e-05)]_48 chrX:15264301-15264381 5.51e-01 80 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chrIV:5778466-5778546 2.55e-01 80 chrII:8485748-8485828 3.03e-01 80 chrII:15212638-15212718 3.87e-01 80 chrIV:7047124-7047204 4.58e-01 80 chrX:8674653-8674733 3.69e-02 18_[+1(2.26e-05)]_54 chrV:3984284-3984364 2.12e-01 80 chrX:8238715-8238795 9.22e-02 51_[+1(9.19e-05)]_21 chrIV:7470185-7470265 4.79e-01 80 chrV:5425246-5425326 2.60e-01 80 chrX:6449190-6449270 9.10e-01 80 chrIV:13253981-13254061 7.97e-03 44_[+5(6.67e-05)]_28 chrIV:9516966-9517046 5.50e-01 80 chrV:19955337-19955417 9.22e-02 28_[+4(6.78e-05)]_44 chrX:10630237-10630317 5.63e-02 43_[+1(2.26e-05)]_29 chrIV:8028477-8028557 8.52e-02 80 chrX:8676203-8676283 7.08e-01 80 chrIII:7645247-7645327 7.17e-01 80 chrX:4529047-4529127 4.83e-02 11_[+1(2.26e-05)]_61 chrV:20693049-20693129 3.32e-01 80 chrV:9165395-9165475 9.28e-01 80 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c23n05.farnam.hpc.yale.internal ********************************************************************************