******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/worm/fasta/RankLinear2.0_40/nhr-2.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrX:14959552-14959632 1.0000 80 chrII:6437004-6437084 1.0000 80 chrIII:4806504-4806584 1.0000 80 chrIII:12092754-12092834 1.0000 80 chrII:9644597-9644677 1.0000 80 chrII:5777531-5777611 1.0000 80 chrIII:304702-304782 1.0000 80 chrX:394868-394948 1.0000 80 chrIII:5245226-5245306 1.0000 80 chrIII:8620418-8620498 1.0000 80 chrII:9724623-9724703 1.0000 80 chrIV:12133935-12134015 1.0000 80 chrIII:9072957-9073037 1.0000 80 chrI:14150115-14150195 1.0000 80 chrIII:2976899-2976979 1.0000 80 chrX:698669-698749 1.0000 80 chrX:7426470-7426550 1.0000 80 chrI:5219159-5219239 1.0000 80 chrV:18594812-18594892 1.0000 80 chrI:5723884-5723964 1.0000 80 chrI:9922862-9922942 1.0000 80 chrX:3400551-3400631 1.0000 80 chrX:14194876-14194956 1.0000 80 chrV:14370967-14371047 1.0000 80 chrI:14957731-14957811 1.0000 80 chrIV:16006439-16006519 1.0000 80 chrV:11711345-11711425 1.0000 80 chrX:7967072-7967152 1.0000 80 chrV:11948440-11948520 1.0000 80 chrIV:6983892-6983972 1.0000 80 chrIV:153931-154011 1.0000 80 chrI:12476157-12476237 1.0000 80 chrIV:2318443-2318523 1.0000 80 chrI:6279833-6279913 1.0000 80 chrI:5214145-5214225 1.0000 80 chrX:2429622-2429702 1.0000 80 chrIV:11720694-11720774 1.0000 80 chrIV:1032670-1032750 1.0000 80 chrI:7196081-7196161 1.0000 80 chrIII:1767567-1767647 1.0000 80 chrI:8768210-8768290 1.0000 80 chrV:1250028-1250108 1.0000 80 chrV:4526325-4526405 1.0000 80 chrIII:6048802-6048882 1.0000 80 chrI:5821262-5821342 1.0000 80 chrII:11796281-11796361 1.0000 80 chrV:7742082-7742162 1.0000 80 chrIII:9696377-9696457 1.0000 80 chrIII:5526132-5526212 1.0000 80 chrX:4812599-4812679 1.0000 80 chrV:12647455-12647535 1.0000 80 chrI:10667830-10667910 1.0000 80 chrIV:13945368-13945448 1.0000 80 chrX:13017811-13017891 1.0000 80 chrI:14084299-14084379 1.0000 80 chrIII:8622599-8622679 1.0000 80 chrX:2989863-2989943 1.0000 80 chrIII:5795156-5795236 1.0000 80 chrI:1125028-1125108 1.0000 80 chrIII:7621509-7621589 1.0000 80 chrIII:2903009-2903089 1.0000 80 chrIV:149973-150053 1.0000 80 chrII:4969932-4970012 1.0000 80 chrIV:10251949-10252029 1.0000 80 chrX:7640969-7641049 1.0000 80 chrII:4814823-4814903 1.0000 80 chrIV:10745491-10745571 1.0000 80 chrIII:5244554-5244634 1.0000 80 chrIV:6134798-6134878 1.0000 80 chrIV:10241829-10241909 1.0000 80 chrX:7915781-7915861 1.0000 80 chrII:14706108-14706188 1.0000 80 chrX:6888366-6888446 1.0000 80 chrIV:5523599-5523679 1.0000 80 chrX:696402-696482 1.0000 80 chrI:13241500-13241580 1.0000 80 chrI:10363106-10363186 1.0000 80 chrI:9543360-9543440 1.0000 80 chrX:10520306-10520386 1.0000 80 chrV:240446-240526 1.0000 80 chrI:14032389-14032469 1.0000 80 chrX:16524471-16524551 1.0000 80 chrII:7381301-7381381 1.0000 80 chrII:15261801-15261881 1.0000 80 chrI:10361234-10361314 1.0000 80 chrIII:966418-966498 1.0000 80 chrI:2964499-2964579 1.0000 80 chrI:9558151-9558231 1.0000 80 chrIII:6479654-6479734 1.0000 80 chrIII:5151134-5151214 1.0000 80 chrV:20751289-20751369 1.0000 80 chrI:439474-439554 1.0000 80 chrIV:5500358-5500438 1.0000 80 chrI:8766507-8766587 1.0000 80 chrV:14372021-14372101 1.0000 80 chrX:5697871-5697951 1.0000 80 chrII:5745269-5745349 1.0000 80 chrX:12987089-12987169 1.0000 80 chrV:14436359-14436439 1.0000 80 chrX:10629295-10629375 1.0000 80 chrIII:13222679-13222759 1.0000 80 chrIV:9607030-9607110 1.0000 80 chrII:7570967-7571047 1.0000 80 chrX:15309298-15309378 1.0000 80 chrIV:3844755-3844835 1.0000 80 chrIV:3771912-3771992 1.0000 80 chrIII:11360909-11360989 1.0000 80 chrI:7198382-7198462 1.0000 80 chrX:9230443-9230523 1.0000 80 chrI:11200337-11200417 1.0000 80 chrX:10516723-10516803 1.0000 80 chrI:441367-441447 1.0000 80 chrII:8345484-8345564 1.0000 80 chrI:8632620-8632700 1.0000 80 chrV:13025442-13025522 1.0000 80 chrX:13889249-13889329 1.0000 80 chrIV:14297208-14297288 1.0000 80 chrI:1126348-1126428 1.0000 80 chrV:11206595-11206675 1.0000 80 chrI:4041043-4041123 1.0000 80 chrIII:9993696-9993776 1.0000 80 chrV:20067240-20067320 1.0000 80 chrV:3447221-3447301 1.0000 80 chrV:14504065-14504145 1.0000 80 chrX:5705111-5705191 1.0000 80 chrX:1223241-1223321 1.0000 80 chrIII:5150177-5150257 1.0000 80 chrX:3972462-3972542 1.0000 80 chrX:3316024-3316104 1.0000 80 chrIV:3497582-3497662 1.0000 80 chrIII:6826300-6826380 1.0000 80 chrII:14429009-14429089 1.0000 80 chrII:6415222-6415302 1.0000 80 chrX:3733863-3733943 1.0000 80 chrV:8660150-8660230 1.0000 80 chrI:5822709-5822789 1.0000 80 chrX:10502355-10502435 1.0000 80 chrX:7563608-7563688 1.0000 80 chrIV:8012440-8012520 1.0000 80 chrIII:3871911-3871991 1.0000 80 chrIV:5857033-5857113 1.0000 80 chrI:14962026-14962106 1.0000 80 chrII:12978827-12978907 1.0000 80 chrII:9964793-9964873 1.0000 80 chrX:1915185-1915265 1.0000 80 chrI:9545252-9545332 1.0000 80 chrI:9914081-9914161 1.0000 80 chrV:20075120-20075200 1.0000 80 chrII:8903193-8903273 1.0000 80 chrI:8633332-8633412 1.0000 80 chrIII:5662324-5662404 1.0000 80 chrV:1556401-1556481 1.0000 80 chrX:8654563-8654643 1.0000 80 chrIV:12376149-12376229 1.0000 80 chrV:4525702-4525782 1.0000 80 chrI:6276824-6276904 1.0000 80 chrII:8895531-8895611 1.0000 80 chrX:14190881-14190961 1.0000 80 chrV:14433713-14433793 1.0000 80 chrII:5742558-5742638 1.0000 80 chrX:6897180-6897260 1.0000 80 chrIV:13716906-13716986 1.0000 80 chrI:3089843-3089923 1.0000 80 chrIV:3843178-3843258 1.0000 80 chrIII:2093720-2093800 1.0000 80 chrX:8661078-8661158 1.0000 80 chrV:5325773-5325853 1.0000 80 chrX:12618593-12618673 1.0000 80 chrV:3214831-3214911 1.0000 80 chrIII:11447009-11447089 1.0000 80 chrIV:554136-554216 1.0000 80 chrX:10249874-10249954 1.0000 80 chrV:4486752-4486832 1.0000 80 chrX:2231491-2231571 1.0000 80 chrII:8415179-8415259 1.0000 80 chrI:4033611-4033691 1.0000 80 chrII:4568347-4568427 1.0000 80 chrIII:7716771-7716851 1.0000 80 chrI:3992793-3992873 1.0000 80 chrX:3061857-3061937 1.0000 80 chrX:10844295-10844375 1.0000 80 chrIII:5143675-5143755 1.0000 80 chrIV:12552099-12552179 1.0000 80 chrV:3456281-3456361 1.0000 80 chrIV:1033590-1033670 1.0000 80 chrX:10991820-10991900 1.0000 80 chrIII:9990339-9990419 1.0000 80 chrII:302184-302264 1.0000 80 chrI:2744376-2744456 1.0000 80 chrI:2151847-2151927 1.0000 80 chrX:8660461-8660541 1.0000 80 chrV:1574767-1574847 1.0000 80 chrIII:5142726-5142806 1.0000 80 chrX:10927917-10927997 1.0000 80 chrX:3310836-3310916 1.0000 80 chrX:7968695-7968775 1.0000 80 chrX:17325120-17325200 1.0000 80 chrII:4565675-4565755 1.0000 80 chrIII:5983928-5984008 1.0000 80 chrIV:16391627-16391707 1.0000 80 chrX:3543362-3543442 1.0000 80 chrV:20760766-20760846 1.0000 80 chrX:3975693-3975773 1.0000 80 chrII:5016284-5016364 1.0000 80 chrX:12087310-12087390 1.0000 80 chrX:10512715-10512795 1.0000 80 chrX:12082488-12082568 1.0000 80 chrII:4822790-4822870 1.0000 80 chrI:5218627-5218707 1.0000 80 chrIII:11452690-11452770 1.0000 80 chrIV:12537877-12537957 1.0000 80 chrX:4797960-4798040 1.0000 80 chrII:14698171-14698251 1.0000 80 chrIV:2426597-2426677 1.0000 80 chrV:11952162-11952242 1.0000 80 chrX:14183013-14183093 1.0000 80 chrIII:8767619-8767699 1.0000 80 chrX:10503562-10503642 1.0000 80 chrX:12092776-12092856 1.0000 80 chrII:2194894-2194974 1.0000 80 chrIII:6828768-6828848 1.0000 80 chrI:5820573-5820653 1.0000 80 chrX:7152177-7152257 1.0000 80 chrX:11370257-11370337 1.0000 80 chrII:2095085-2095165 1.0000 80 chrV:6681652-6681732 1.0000 80 chrIV:11568996-11569076 1.0000 80 chrV:11698671-11698751 1.0000 80 chrIII:6477801-6477881 1.0000 80 chrII:7568850-7568930 1.0000 80 chrII:13856847-13856927 1.0000 80 chrV:14363328-14363408 1.0000 80 chrX:17480654-17480734 1.0000 80 chrIV:3755711-3755791 1.0000 80 chrII:12990313-12990393 1.0000 80 chrIV:8000978-8001058 1.0000 80 chrIII:9089912-9089992 1.0000 80 chrI:3409817-3409897 1.0000 80 chrX:3555781-3555861 1.0000 80 chrX:6371870-6371950 1.0000 80 chrV:11663633-11663713 1.0000 80 chrIV:5971275-5971355 1.0000 80 chrII:9646933-9647013 1.0000 80 chrIV:5502797-5502877 1.0000 80 chrII:627155-627235 1.0000 80 chrX:14187995-14188075 1.0000 80 chrV:11953207-11953287 1.0000 80 chrX:4765204-4765284 1.0000 80 chrX:2926983-2927063 1.0000 80 chrIII:6027790-6027870 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/worm/inference_raw/MEME/RankLinear2.0_40_nhr-2/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/worm/fasta/RankLinear2.0_40/nhr-2.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.281 C 0.223 G 0.22 T 0.277 Background letter frequencies (from file dataset with add-one prior applied): A 0.281 C 0.223 G 0.22 T 0.277 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF TTRCGYAA MEME-1 width = 8 sites = 63 llr = 482 E-value = 8.2e-013 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTRCGYAA MEME-1 Description -------------------------------------------------------------------------------- Simplified A ::5:2:9a pos.-specific C :::9:51: probability G :35:8::: matrix T a7:1:5:: bits 2.2 2.0 1.7 * * 1.5 * * * Relative 1.3 * ** ** Entropy 1.1 ******** (11.0 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TTACGCAA consensus GG AT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTRCGYAA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:6371870-6371950 37 1.46e-05 CAGACAATTG TTGCGCAA TAATGTCTAA chrX:3061857-3061937 11 1.46e-05 AGCGTCTCTA TTGCGCAA CAGAACACAA chrII:8415179-8415259 42 1.46e-05 CGGAAGAAGT TTGCGCAA TTCGGGTATT chrII:8903193-8903273 12 1.46e-05 GATTTCTGTA TTGCGCAA GATGCCGTTA chrV:11206595-11206675 41 1.46e-05 TCGGGGCGGA TTGCGCAA TTTTGAGTTA chrIV:14297208-14297288 51 1.46e-05 CCCATAATTA TTGCGCAA CCTTCTCCCT chrI:11200337-11200417 51 1.46e-05 AGATATATAA TTGCGCAA GAGGTCAGCC chrIV:3844755-3844835 5 1.46e-05 TCAA TTGCGCAA CACCTGGCAA chrX:696402-696482 28 1.46e-05 TTGCACAGAG TTGCGCAA CTTGCGCATA chrIV:8000978-8001058 3 5.13e-05 TG TTACGCAA TTTAAAAATT chrII:4822790-4822870 12 5.13e-05 TGCGCATCCG TTACGCAA CTTTCTAAAG chrIV:16391627-16391707 12 5.13e-05 AAAGAAAACA TTACGCAA CTTTGTGGAA chrV:1574767-1574847 33 5.13e-05 GCTTTTCCAG TTACGCAA GTCAGTTGCA chrX:8661078-8661158 45 5.13e-05 GTCAATACAA TTACGCAA TCGCTCCAGA chrI:14962026-14962106 50 5.13e-05 CTCCTGTTAG TTACGCAA CGACGACCGC chrII:14429009-14429089 5 5.13e-05 CGGA TTACGCAA TTGACACAAA chrV:20067240-20067320 17 5.13e-05 GCTTGAGGTG TTGCGTAA TCGAGGTGTC chrI:8766507-8766587 59 5.13e-05 TTTATGACCC TTACGCAA CCTACatata chrI:1125028-1125108 43 5.13e-05 AGGGTGTGAA TTGCGTAA CCAACGAGTA chrIII:4806504-4806584 46 5.13e-05 ACGGGTCGAA TTGCGTAA GCACCGTAAC chrII:5016284-5016364 71 7.45e-05 GCAAAGAGGA TTACGTAA CA chrI:10363106-10363186 71 7.45e-05 GTGACAGAGT TTACGTAA GC chrIV:6134798-6134878 68 7.45e-05 CAACCGCTTA TTACGTAA TTATT chrI:7196081-7196161 16 7.45e-05 TGTGTGACGT TTACGTAA TATGGATTTC chrII:4565675-4565755 50 8.60e-05 CGGTTACAAT TGGCGCAA AATCATCATT chrV:11953207-11953287 69 1.15e-04 ATGTACCACT TGGCGTAA CATG chrX:17325120-17325200 24 1.15e-04 AGCCTGTAAC TGACGCAA CCGGGAAGGT chrIV:13716906-13716986 37 1.15e-04 AACTGACAGG TGACGCAA TAAATGAGTG chrIV:149973-150053 7 1.15e-04 GAATGA TGACGCAA TGGTTATCCT chrI:2151847-2151927 52 1.34e-04 CTCTTCCTTA TGACGTAA CTGTCTGTTG chrV:14433713-14433793 72 1.34e-04 TAAAGGATTC TGACGTAA C chrX:14190881-14190961 24 1.34e-04 GAAAGTGATA TGACGTAA CTTGTCATAA chrIII:5795156-5795236 11 1.34e-04 TGAACTGTCG TGACGTAA CAATGTTGAT chrII:13856847-13856927 57 1.52e-04 GCCTTTCTGC TTGCACAA TGTGCATGTC chrIII:9993696-9993776 48 1.52e-04 ACCTAATCTC TTGCACAA TCTGTCTGCC chrI:14150115-14150195 9 1.52e-04 ATTTGGTG TTGCACAA CTGTGTCAGT chrII:5777531-5777611 56 1.52e-04 TATCTTCCAA TTGCACAA TATTTGAAAC chrIII:3871911-3871991 48 1.64e-04 GTCAAGTTCA TTGCGCCA TATCTAAGAT chrV:4486752-4486832 21 2.11e-04 AGATTTTTGA TTGCATAA TTGAGGATGA chrX:6897180-6897260 69 2.11e-04 CTCTTCACAT TTGCATAA TCCA chrIII:5150177-5150257 67 2.11e-04 GTGGACAAAG TTGCATAA TCAGAG chrIII:8620418-8620498 13 2.11e-04 TCATCGACCG TTGCATAA CCTTTCCTCG chrV:14363328-14363408 28 2.58e-04 AATGAGTGTT TTGTGCAA TTGTCGGTAG chrIV:12537877-12537957 60 2.58e-04 AGCGAACTTC TTGCGTCA TATCTTAATA chrI:5822709-5822789 48 2.58e-04 TATGTAACGT TTGTGCAA CAGAATATTT chrI:2964499-2964579 32 2.58e-04 ATACAGTAAA TTGTGCAA TATGTATGAA chrIV:153931-154011 34 2.88e-04 ATGGAGCAGA TTACATAA CAAAGAGTTC chrV:11663633-11663713 15 3.66e-04 ATTACTGATG TTACGTCA CTTCCGACGC chrX:7152177-7152257 1 3.66e-04 . TTACGTCA TCGATGAGCA chrI:13241500-13241580 65 3.66e-04 CAAACAGTCG TTACGTCA TCGCACTG chrII:11796281-11796361 18 3.66e-04 GCTAATGAGG TTGTGTAA TATAAAGAGG chrIV:1032670-1032750 22 3.66e-04 TTGGAATGAG TTATGCAA GGGTCAACTA chrV:18594812-18594892 62 3.66e-04 CGCAGAGAAA TTATGCAA TTGTTGACAG chrX:7968695-7968775 12 4.42e-04 AAAGAGACTG TGACACAA CCATAGAAAA chrIV:5500358-5500438 66 4.42e-04 CAGCAGAAAC TTATGTAA TAGCGTG chrX:16524471-16524551 58 4.42e-04 GCACATCTTC TTATGTAA CCCGCCTGGG chrX:7967072-7967152 18 4.42e-04 CATGTGTTTA TGGCATAA TAGGATGACT chrV:240446-240526 43 4.79e-04 AACATTAATA TGGCGTCA TATGATGGCA chrV:11711345-11711425 66 5.03e-04 CAACACACAA TGACATAA TGGATTT chrX:394868-394948 9 5.03e-04 GTAAGATC TGACATAA GATGCACACA chrX:2231491-2231571 15 5.53e-04 GACAATCCAA TGATGCAA CCGTTCAGCG chrX:7915781-7915861 36 5.53e-04 CAGCTGCTGC TGACGTCA TGTTTGCTAC chrII:6437004-6437084 70 5.68e-04 ATGCTCTCTT TTGCACCA AGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTRCGYAA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:6371870-6371950 1.5e-05 36_[+1]_36 chrX:3061857-3061937 1.5e-05 10_[+1]_62 chrII:8415179-8415259 1.5e-05 41_[+1]_31 chrII:8903193-8903273 1.5e-05 11_[+1]_61 chrV:11206595-11206675 1.5e-05 40_[+1]_32 chrIV:14297208-14297288 1.5e-05 50_[+1]_22 chrI:11200337-11200417 1.5e-05 50_[+1]_22 chrIV:3844755-3844835 1.5e-05 4_[+1]_68 chrX:696402-696482 1.5e-05 27_[+1]_45 chrIV:8000978-8001058 5.1e-05 2_[+1]_70 chrII:4822790-4822870 5.1e-05 11_[+1]_61 chrIV:16391627-16391707 5.1e-05 11_[+1]_61 chrV:1574767-1574847 5.1e-05 32_[+1]_40 chrX:8661078-8661158 5.1e-05 44_[+1]_28 chrI:14962026-14962106 5.1e-05 49_[+1]_23 chrII:14429009-14429089 5.1e-05 4_[+1]_68 chrV:20067240-20067320 5.1e-05 16_[+1]_56 chrI:8766507-8766587 5.1e-05 58_[+1]_14 chrI:1125028-1125108 5.1e-05 42_[+1]_30 chrIII:4806504-4806584 5.1e-05 45_[+1]_27 chrII:5016284-5016364 7.4e-05 70_[+1]_2 chrI:10363106-10363186 7.4e-05 70_[+1]_2 chrIV:6134798-6134878 7.4e-05 67_[+1]_5 chrI:7196081-7196161 7.4e-05 15_[+1]_57 chrII:4565675-4565755 8.6e-05 49_[+1]_23 chrV:11953207-11953287 0.00012 68_[+1]_4 chrX:17325120-17325200 0.00012 23_[+1]_49 chrIV:13716906-13716986 0.00012 36_[+1]_36 chrIV:149973-150053 0.00012 6_[+1]_66 chrI:2151847-2151927 0.00013 51_[+1]_21 chrV:14433713-14433793 0.00013 71_[+1]_1 chrX:14190881-14190961 0.00013 23_[+1]_49 chrIII:5795156-5795236 0.00013 10_[+1]_62 chrII:13856847-13856927 0.00015 56_[+1]_16 chrIII:9993696-9993776 0.00015 47_[+1]_25 chrI:14150115-14150195 0.00015 8_[+1]_64 chrII:5777531-5777611 0.00015 55_[+1]_17 chrIII:3871911-3871991 0.00016 47_[+1]_25 chrV:4486752-4486832 0.00021 20_[+1]_52 chrX:6897180-6897260 0.00021 68_[+1]_4 chrIII:5150177-5150257 0.00021 66_[+1]_6 chrIII:8620418-8620498 0.00021 12_[+1]_60 chrV:14363328-14363408 0.00026 27_[+1]_45 chrIV:12537877-12537957 0.00026 59_[+1]_13 chrI:5822709-5822789 0.00026 47_[+1]_25 chrI:2964499-2964579 0.00026 31_[+1]_41 chrIV:153931-154011 0.00029 33_[+1]_39 chrV:11663633-11663713 0.00037 14_[+1]_58 chrX:7152177-7152257 0.00037 [+1]_72 chrI:13241500-13241580 0.00037 64_[+1]_8 chrII:11796281-11796361 0.00037 17_[+1]_55 chrIV:1032670-1032750 0.00037 21_[+1]_51 chrV:18594812-18594892 0.00037 61_[+1]_11 chrX:7968695-7968775 0.00044 11_[+1]_61 chrIV:5500358-5500438 0.00044 65_[+1]_7 chrX:16524471-16524551 0.00044 57_[+1]_15 chrX:7967072-7967152 0.00044 17_[+1]_55 chrV:240446-240526 0.00048 42_[+1]_30 chrV:11711345-11711425 0.0005 65_[+1]_7 chrX:394868-394948 0.0005 8_[+1]_64 chrX:2231491-2231571 0.00055 14_[+1]_58 chrX:7915781-7915861 0.00055 35_[+1]_37 chrII:6437004-6437084 0.00057 69_[+1]_3 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTRCGYAA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTRCGYAA width=8 seqs=63 chrX:6371870-6371950 ( 37) TTGCGCAA 1 chrX:3061857-3061937 ( 11) TTGCGCAA 1 chrII:8415179-8415259 ( 42) TTGCGCAA 1 chrII:8903193-8903273 ( 12) TTGCGCAA 1 chrV:11206595-11206675 ( 41) TTGCGCAA 1 chrIV:14297208-14297288 ( 51) TTGCGCAA 1 chrI:11200337-11200417 ( 51) TTGCGCAA 1 chrIV:3844755-3844835 ( 5) TTGCGCAA 1 chrX:696402-696482 ( 28) TTGCGCAA 1 chrIV:8000978-8001058 ( 3) TTACGCAA 1 chrII:4822790-4822870 ( 12) TTACGCAA 1 chrIV:16391627-16391707 ( 12) TTACGCAA 1 chrV:1574767-1574847 ( 33) TTACGCAA 1 chrX:8661078-8661158 ( 45) TTACGCAA 1 chrI:14962026-14962106 ( 50) TTACGCAA 1 chrII:14429009-14429089 ( 5) TTACGCAA 1 chrV:20067240-20067320 ( 17) TTGCGTAA 1 chrI:8766507-8766587 ( 59) TTACGCAA 1 chrI:1125028-1125108 ( 43) TTGCGTAA 1 chrIII:4806504-4806584 ( 46) TTGCGTAA 1 chrII:5016284-5016364 ( 71) TTACGTAA 1 chrI:10363106-10363186 ( 71) TTACGTAA 1 chrIV:6134798-6134878 ( 68) TTACGTAA 1 chrI:7196081-7196161 ( 16) TTACGTAA 1 chrII:4565675-4565755 ( 50) TGGCGCAA 1 chrV:11953207-11953287 ( 69) TGGCGTAA 1 chrX:17325120-17325200 ( 24) TGACGCAA 1 chrIV:13716906-13716986 ( 37) TGACGCAA 1 chrIV:149973-150053 ( 7) TGACGCAA 1 chrI:2151847-2151927 ( 52) TGACGTAA 1 chrV:14433713-14433793 ( 72) TGACGTAA 1 chrX:14190881-14190961 ( 24) TGACGTAA 1 chrIII:5795156-5795236 ( 11) TGACGTAA 1 chrII:13856847-13856927 ( 57) TTGCACAA 1 chrIII:9993696-9993776 ( 48) TTGCACAA 1 chrI:14150115-14150195 ( 9) TTGCACAA 1 chrII:5777531-5777611 ( 56) TTGCACAA 1 chrIII:3871911-3871991 ( 48) TTGCGCCA 1 chrV:4486752-4486832 ( 21) TTGCATAA 1 chrX:6897180-6897260 ( 69) TTGCATAA 1 chrIII:5150177-5150257 ( 67) TTGCATAA 1 chrIII:8620418-8620498 ( 13) TTGCATAA 1 chrV:14363328-14363408 ( 28) TTGTGCAA 1 chrIV:12537877-12537957 ( 60) TTGCGTCA 1 chrI:5822709-5822789 ( 48) TTGTGCAA 1 chrI:2964499-2964579 ( 32) TTGTGCAA 1 chrIV:153931-154011 ( 34) TTACATAA 1 chrV:11663633-11663713 ( 15) TTACGTCA 1 chrX:7152177-7152257 ( 1) TTACGTCA 1 chrI:13241500-13241580 ( 65) TTACGTCA 1 chrII:11796281-11796361 ( 18) TTGTGTAA 1 chrIV:1032670-1032750 ( 22) TTATGCAA 1 chrV:18594812-18594892 ( 62) TTATGCAA 1 chrX:7968695-7968775 ( 12) TGACACAA 1 chrIV:5500358-5500438 ( 66) TTATGTAA 1 chrX:16524471-16524551 ( 58) TTATGTAA 1 chrX:7967072-7967152 ( 18) TGGCATAA 1 chrV:240446-240526 ( 43) TGGCGTCA 1 chrV:11711345-11711425 ( 66) TGACATAA 1 chrX:394868-394948 ( 9) TGACATAA 1 chrX:2231491-2231571 ( 15) TGATGCAA 1 chrX:7915781-7915861 ( 36) TGACGTCA 1 chrII:6437004-6437084 ( 70) TTGCACCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTRCGYAA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.48684 E= 8.2e-013 -1262 -1262 -1262 185 -1262 -1262 21 143 85 -1262 116 -1262 -1262 195 -1262 -95 -34 -1262 182 -1262 -1262 128 -1262 73 164 -81 -1262 -1262 183 -1262 -1262 -1262 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTRCGYAA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 63 E= 8.2e-013 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.253968 0.746032 0.507937 0.000000 0.492063 0.000000 0.000000 0.857143 0.000000 0.142857 0.222222 0.000000 0.777778 0.000000 0.000000 0.539683 0.000000 0.460317 0.873016 0.126984 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTRCGYAA MEME-1 regular expression -------------------------------------------------------------------------------- T[TG][AG]C[GA][CT]AA -------------------------------------------------------------------------------- Time 7.99 secs. ******************************************************************************** ******************************************************************************** MOTIF KGTCAHNW MEME-2 width = 8 sites = 93 llr = 623 E-value = 2.0e-008 ******************************************************************************** -------------------------------------------------------------------------------- Motif KGTCAHNW MEME-2 Description -------------------------------------------------------------------------------- Simplified A ::::a323 pos.-specific C :::a:232 probability G 7a:::12: matrix T 3:a::335 bits 2.2 * * 2.0 * * 1.7 **** 1.5 **** Relative 1.3 **** Entropy 1.1 ***** (9.7 bits) 0.9 ***** 0.7 ***** 0.4 ***** * 0.2 ***** * 0.0 -------- Multilevel GGTCATTT consensus T ACA sequence CAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KGTCAHNW MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:2926983-2927063 3 3.22e-05 AC GGTCATTT AATAACGGCC chrIII:8767619-8767699 67 3.22e-05 GACTAACTAA GGTCATTT TAGAAA chrX:3975693-3975773 6 3.22e-05 TAACC GGTCATTT AGAATATCAA chrI:3089843-3089923 25 3.22e-05 TGCATTTTTG GGTCATTT CGGAGAGAAA chrV:20075120-20075200 5 3.22e-05 AGAG GGTCATCT CCACTTGCAC chrX:10520306-10520386 68 3.22e-05 CATCCCACCC GGTCATTT CCCGA chrX:14959552-14959632 37 3.22e-05 TATAATGAGA GGTCATCT TACCTTTTTG chrII:9646933-9647013 37 9.09e-05 GTCGGTACCA GGTCACTT CCAATGAGGT chrX:10516723-10516803 72 9.09e-05 TTTCAAGTCC GGTCACCT A chrIV:13945368-13945448 54 9.09e-05 AGAACAACAA GGTCAACT ATCTATTCCC chrIII:9696377-9696457 49 9.09e-05 GTCTAACAAA GGTCAATT CCGAAGGGTT chrIV:1032670-1032750 31 9.09e-05 GTTATGCAAG GGTCAACT AGGTAAACAG chrX:698669-698749 71 9.09e-05 GTCCAAACAA GGTCAATT CA chrII:9644597-9644677 70 9.09e-05 GACCATGTCA GGTCAACT AAC chrII:7570967-7571047 22 1.23e-04 GACTCTTCTC GGTCATGT CGTCGGTGCA chrI:14957731-14957811 35 1.23e-04 GGCATTACCA GGTCATAT TTGTATGACC chrV:14363328-14363408 60 2.41e-04 GTGAAGAGCG GGTCACAT CCTTGAGCGA chrX:12082488-12082568 20 2.41e-04 GAGAAAGGAG GGTCAAGT TCCCAACCAA chrX:8660461-8660541 39 2.41e-04 CTCATTGTTT GGTCATCC TCCTTTGCAC chrIII:11447009-11447089 50 2.41e-04 CCTGTCGCGC GGTCAAGT GGAGGGGCAA chrV:3214831-3214911 36 2.41e-04 AATTGGATTA GGTCATCA TCGTCATCTA chrII:8895531-8895611 47 2.41e-04 TCCTAATCGC GGTCATTC GACGCCATAA chrX:1915185-1915265 70 2.41e-04 ACCCTCACCG GGTCATTC ACA chrIV:3497582-3497662 70 2.41e-04 CTTCTTGACA GGTCACAT CTG chrII:8345484-8345564 14 2.41e-04 TAATCTTTTC GGTCATCA GTAGCAGTTC chrX:9230443-9230523 7 2.41e-04 AGATTA GGTCAAGT GTATAGAGGA chrV:14436359-14436439 36 2.41e-04 GATTTCGACA GGTCAAAT ATACATGCTT chrII:15261801-15261881 45 2.41e-04 TTGTTCAAAA GGTCAAGT AGGTACACAC chrV:12647455-12647535 34 2.41e-04 aggaggcgaa ggtcaagt gccgagcgag chrI:6279833-6279913 27 2.41e-04 TCACTAAGAA GGTCAAGT GGGTACTGAC chrIV:2318443-2318523 33 2.41e-04 TCCTGTGCAA GGTCATCA CCTCCCCCCA chrIV:6983892-6983972 29 2.41e-04 AACATTATAC GGTCAAGT GCATCCTCCA chrI:5723884-5723964 5 2.41e-04 GTCG GGTCATCA CCCAGATTAT chrII:6437004-6437084 36 2.41e-04 TCGCCTTGGG GGTCATTC CAAAACATTC chrI:3409817-3409897 37 3.73e-04 ACATTACACC GGTCACCC CCCGTAGACC chrIV:8000978-8001058 55 3.73e-04 TGTATAATAC GGTCACTC ACCATTAATC chrV:20760766-20760846 33 3.73e-04 GGTGTTGAGA GGTCAATC ACTAAAAGAA chrV:1574767-1574847 10 3.73e-04 GACATCATA GGTCACTC GATATGCTTT chrIII:5143675-5143755 55 3.73e-04 AATAAAGAGG GGTCACTA ATTTCGCGCA chrIII:2093720-2093800 36 3.73e-04 GAGTGGTATG GGTCACCC CACTTAACAC chrIII:5662324-5662404 65 3.73e-04 ATAGTGTCTC GGTCAATC GGACCTAT chrX:10502355-10502435 58 3.73e-04 ATCAATTCTG GGTCAATA ATTTGTGATT chrV:8660150-8660230 73 3.73e-04 TTGATTGTCA GGTCAATA chrIII:6479654-6479734 22 3.73e-04 ACAGACAGAT GGTCAATA TGCGCTAAAT chrII:7381301-7381381 11 3.73e-04 TAGAAGACAA GGTCACTA AAGAGATTCA chrV:11953207-11953287 32 4.72e-04 GGTATATAGA GGTCATGC CAAGGCACTC chrIII:9089912-9089992 52 4.72e-04 AAATTTATCC GGTCATGA ACTTTCCAAG chrIV:3755711-3755791 50 4.72e-04 AACTGTCGGC TGTCATTT TATGGCCCAC chrX:17480654-17480734 56 4.72e-04 CAAGGTGACC TGTCATCT GTCATCATCT chrV:11698671-11698751 69 4.72e-04 TGACACCACG TGTCATCT GGTT chrI:8633332-8633412 29 4.72e-04 TGATGTAACA GGTCATGA ACTGTGTCAC chrI:5822709-5822789 66 4.72e-04 CAGAATATTT GGTCATAA ACTGTCA chrX:11370257-11370337 71 6.79e-04 ATACCTGGAC TGTCACCT AT chrIII:5983928-5984008 53 6.79e-04 GGGAATACCC GGTCACAA CATCTCACCA chrI:3992793-3992873 64 6.79e-04 TAAACAAGGG GGTCACAA ATGGACCCC chrI:6276824-6276904 44 6.79e-04 TTAGAGGAAG TGTCAATT ATTAACTAAT chrV:1556401-1556481 9 6.79e-04 AAACAAGA GGTCAGAT GTCCGAAAGA chrI:441367-441447 62 6.79e-04 ATAAAAAGGT GGTCAAAC AAGTCGTAAA chrX:7915781-7915861 1 6.79e-04 . GGTCACAC CATGTGGTAT chrIV:10241829-10241909 32 6.79e-04 ATGAGTGTTG GGTCACAC CTGTTGTAAC chrIV:6134798-6134878 23 6.79e-04 GTGCCATGTT TGTCACTT GACAAGGTGA chrX:2989863-2989943 14 6.79e-04 TTGGGATCGG GGTCAGGT GGTTCGAGTG chrX:4812599-4812679 33 6.79e-04 ACTGGATTAC TGTCAATT GCGCGTAACC chrV:1250028-1250108 6 6.79e-04 CAAAA GGTCAGAT ATCTGCAAGA chrIV:16006439-16006519 72 6.79e-04 ACAGTGGAAA GGTCAGAT T chrV:20067240-20067320 31 7.19e-04 GTAATCGAGG TGTCATGT CCATCACTCG chrIII:9072957-9073037 1 7.19e-04 . TGTCATAT ACATGTGACG chrI:11200337-11200417 61 7.66e-04 TTGCGCAAGA GGTCAGCC AACCCGCACA chrX:12987089-12987169 10 7.66e-04 GCCAGTTGA GGTCAGCA CGCCCAAACA chrII:9724623-9724703 48 7.66e-04 CCAACTTTAA GGTCAGCA GGTGGTAATA chrX:10503562-10503642 17 9.14e-04 TGTTATCTTG TGTCATTC ATACCCTTAT chrI:5218627-5218707 56 9.14e-04 TGTCCATACG TGTCAAGT ACACCCACAA chrI:10363106-10363186 26 9.14e-04 ATCCATAAAC TGTCACAT TGACCGTTCC chrX:696402-696482 59 9.14e-04 GTCACTCGAC TGTCATCA CATCTTACCA chrI:5820573-5820653 8 1.13e-03 TCTGACC TGTCACTC TCTTACCCAG chrIV:2426597-2426677 35 1.13e-03 CCCAGAATGT TGTCACCC GGAGACAAGG chrIII:11452690-11452770 17 1.13e-03 AAACGTTCGC TGTCAATA ATCCATCACC chrX:8661078-8661158 34 1.13e-03 AGACGAGAAC TGTCAATA CAATTACGCA chrII:6415222-6415302 23 1.13e-03 CACGGATCAG TGTCAATC GAATATCATG chrIV:14297208-14297288 69 1.13e-03 CCTTCTCCCT GGTCAGAC ACCT chrI:7198382-7198462 10 1.13e-03 TTGATGGAA TGTCAACA CGTGACAGTG chrI:8768210-8768290 50 1.13e-03 TTATGAAGAC TGTCAGCT GGTGGGTGAC chrI:5214145-5214225 26 1.13e-03 AGACATAAGG TGTCAACA GGTGTGGAGA chrI:14150115-14150195 20 1.13e-03 TGCACAACTG TGTCAGTT CGGGGGGAGG chrII:13856847-13856927 71 1.20e-03 ACAATGTGCA TGTCATGA CA chrX:14190881-14190961 34 1.20e-03 TGACGTAACT TGTCATAA AATCCTCTCC chrII:5745269-5745349 55 1.20e-03 TGCATATCGA TGTCATAA CTTGAGATAC chrX:16524471-16524551 38 1.20e-03 GCTGTAGGCA TGTCATAA ACGCACATCT chrIV:1033590-1033670 47 1.37e-03 CCTTCAAGGG TGTCAAGA GCTGTAAAAT chrIV:554136-554216 43 1.37e-03 AAACTAGACG TGTCACAA TGATTTATTG chrIII:5244554-5244634 1 1.37e-03 . TGTCACAC ATTTCTAAAC chrIV:153931-154011 73 1.37e-03 TTGATTGGAA TGTCAGAT chrII:4565675-4565755 8 1.49e-03 TATTTAG TGTCAGGA ATAACCCTAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KGTCAHNW MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:2926983-2927063 3.2e-05 2_[+2]_70 chrIII:8767619-8767699 3.2e-05 66_[+2]_6 chrX:3975693-3975773 3.2e-05 5_[+2]_67 chrI:3089843-3089923 3.2e-05 24_[+2]_48 chrV:20075120-20075200 3.2e-05 4_[+2]_68 chrX:10520306-10520386 3.2e-05 67_[+2]_5 chrX:14959552-14959632 3.2e-05 36_[+2]_36 chrII:9646933-9647013 9.1e-05 36_[+2]_36 chrX:10516723-10516803 9.1e-05 71_[+2]_1 chrIV:13945368-13945448 9.1e-05 53_[+2]_19 chrIII:9696377-9696457 9.1e-05 48_[+2]_24 chrIV:1032670-1032750 9.1e-05 30_[+2]_42 chrX:698669-698749 9.1e-05 70_[+2]_2 chrII:9644597-9644677 9.1e-05 69_[+2]_3 chrII:7570967-7571047 0.00012 21_[+2]_51 chrI:14957731-14957811 0.00012 34_[+2]_38 chrV:14363328-14363408 0.00024 59_[+2]_13 chrX:12082488-12082568 0.00024 19_[+2]_53 chrX:8660461-8660541 0.00024 38_[+2]_34 chrIII:11447009-11447089 0.00024 49_[+2]_23 chrV:3214831-3214911 0.00024 35_[+2]_37 chrII:8895531-8895611 0.00024 46_[+2]_26 chrX:1915185-1915265 0.00024 69_[+2]_3 chrIV:3497582-3497662 0.00024 69_[+2]_3 chrII:8345484-8345564 0.00024 13_[+2]_59 chrX:9230443-9230523 0.00024 6_[+2]_66 chrV:14436359-14436439 0.00024 35_[+2]_37 chrII:15261801-15261881 0.00024 44_[+2]_28 chrV:12647455-12647535 0.00024 33_[+2]_39 chrI:6279833-6279913 0.00024 26_[+2]_46 chrIV:2318443-2318523 0.00024 32_[+2]_40 chrIV:6983892-6983972 0.00024 28_[+2]_44 chrI:5723884-5723964 0.00024 4_[+2]_68 chrII:6437004-6437084 0.00024 35_[+2]_37 chrI:3409817-3409897 0.00037 36_[+2]_36 chrIV:8000978-8001058 0.00037 54_[+2]_18 chrV:20760766-20760846 0.00037 32_[+2]_40 chrV:1574767-1574847 0.00037 9_[+2]_63 chrIII:5143675-5143755 0.00037 54_[+2]_18 chrIII:2093720-2093800 0.00037 35_[+2]_37 chrIII:5662324-5662404 0.00037 64_[+2]_8 chrX:10502355-10502435 0.00037 57_[+2]_15 chrV:8660150-8660230 0.00037 72_[+2] chrIII:6479654-6479734 0.00037 21_[+2]_51 chrII:7381301-7381381 0.00037 10_[+2]_62 chrV:11953207-11953287 0.00047 31_[+2]_41 chrIII:9089912-9089992 0.00047 51_[+2]_21 chrIV:3755711-3755791 0.00047 49_[+2]_23 chrX:17480654-17480734 0.00047 55_[+2]_17 chrV:11698671-11698751 0.00047 68_[+2]_4 chrI:8633332-8633412 0.00047 28_[+2]_44 chrI:5822709-5822789 0.00047 65_[+2]_7 chrX:11370257-11370337 0.00068 70_[+2]_2 chrIII:5983928-5984008 0.00068 52_[+2]_20 chrI:3992793-3992873 0.00068 63_[+2]_9 chrI:6276824-6276904 0.00068 43_[+2]_29 chrV:1556401-1556481 0.00068 8_[+2]_64 chrI:441367-441447 0.00068 61_[+2]_11 chrX:7915781-7915861 0.00068 [+2]_72 chrIV:10241829-10241909 0.00068 31_[+2]_41 chrIV:6134798-6134878 0.00068 22_[+2]_50 chrX:2989863-2989943 0.00068 13_[+2]_59 chrX:4812599-4812679 0.00068 32_[+2]_40 chrV:1250028-1250108 0.00068 5_[+2]_67 chrIV:16006439-16006519 0.00068 71_[+2]_1 chrV:20067240-20067320 0.00072 30_[+2]_42 chrIII:9072957-9073037 0.00072 [+2]_72 chrI:11200337-11200417 0.00077 60_[+2]_12 chrX:12987089-12987169 0.00077 9_[+2]_63 chrII:9724623-9724703 0.00077 47_[+2]_25 chrX:10503562-10503642 0.00091 16_[+2]_56 chrI:5218627-5218707 0.00091 55_[+2]_17 chrI:10363106-10363186 0.00091 25_[+2]_47 chrX:696402-696482 0.00091 58_[+2]_14 chrI:5820573-5820653 0.0011 7_[+2]_65 chrIV:2426597-2426677 0.0011 34_[+2]_38 chrIII:11452690-11452770 0.0011 16_[+2]_56 chrX:8661078-8661158 0.0011 33_[+2]_39 chrII:6415222-6415302 0.0011 22_[+2]_50 chrIV:14297208-14297288 0.0011 68_[+2]_4 chrI:7198382-7198462 0.0011 9_[+2]_63 chrI:8768210-8768290 0.0011 49_[+2]_23 chrI:5214145-5214225 0.0011 25_[+2]_47 chrI:14150115-14150195 0.0011 19_[+2]_53 chrII:13856847-13856927 0.0012 70_[+2]_2 chrX:14190881-14190961 0.0012 33_[+2]_39 chrII:5745269-5745349 0.0012 54_[+2]_18 chrX:16524471-16524551 0.0012 37_[+2]_35 chrIV:1033590-1033670 0.0014 46_[+2]_26 chrIV:554136-554216 0.0014 42_[+2]_30 chrIII:5244554-5244634 0.0014 [+2]_72 chrIV:153931-154011 0.0014 72_[+2] chrII:4565675-4565755 0.0015 7_[+2]_65 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KGTCAHNW MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF KGTCAHNW width=8 seqs=93 chrX:2926983-2927063 ( 3) GGTCATTT 1 chrIII:8767619-8767699 ( 67) GGTCATTT 1 chrX:3975693-3975773 ( 6) GGTCATTT 1 chrI:3089843-3089923 ( 25) GGTCATTT 1 chrV:20075120-20075200 ( 5) GGTCATCT 1 chrX:10520306-10520386 ( 68) GGTCATTT 1 chrX:14959552-14959632 ( 37) GGTCATCT 1 chrII:9646933-9647013 ( 37) GGTCACTT 1 chrX:10516723-10516803 ( 72) GGTCACCT 1 chrIV:13945368-13945448 ( 54) GGTCAACT 1 chrIII:9696377-9696457 ( 49) GGTCAATT 1 chrIV:1032670-1032750 ( 31) GGTCAACT 1 chrX:698669-698749 ( 71) GGTCAATT 1 chrII:9644597-9644677 ( 70) GGTCAACT 1 chrII:7570967-7571047 ( 22) GGTCATGT 1 chrI:14957731-14957811 ( 35) GGTCATAT 1 chrV:14363328-14363408 ( 60) GGTCACAT 1 chrX:12082488-12082568 ( 20) GGTCAAGT 1 chrX:8660461-8660541 ( 39) GGTCATCC 1 chrIII:11447009-11447089 ( 50) GGTCAAGT 1 chrV:3214831-3214911 ( 36) GGTCATCA 1 chrII:8895531-8895611 ( 47) GGTCATTC 1 chrX:1915185-1915265 ( 70) GGTCATTC 1 chrIV:3497582-3497662 ( 70) GGTCACAT 1 chrII:8345484-8345564 ( 14) GGTCATCA 1 chrX:9230443-9230523 ( 7) GGTCAAGT 1 chrV:14436359-14436439 ( 36) GGTCAAAT 1 chrII:15261801-15261881 ( 45) GGTCAAGT 1 chrV:12647455-12647535 ( 34) GGTCAAGT 1 chrI:6279833-6279913 ( 27) GGTCAAGT 1 chrIV:2318443-2318523 ( 33) GGTCATCA 1 chrIV:6983892-6983972 ( 29) GGTCAAGT 1 chrI:5723884-5723964 ( 5) GGTCATCA 1 chrII:6437004-6437084 ( 36) GGTCATTC 1 chrI:3409817-3409897 ( 37) GGTCACCC 1 chrIV:8000978-8001058 ( 55) GGTCACTC 1 chrV:20760766-20760846 ( 33) GGTCAATC 1 chrV:1574767-1574847 ( 10) GGTCACTC 1 chrIII:5143675-5143755 ( 55) GGTCACTA 1 chrIII:2093720-2093800 ( 36) GGTCACCC 1 chrIII:5662324-5662404 ( 65) GGTCAATC 1 chrX:10502355-10502435 ( 58) GGTCAATA 1 chrV:8660150-8660230 ( 73) GGTCAATA 1 chrIII:6479654-6479734 ( 22) GGTCAATA 1 chrII:7381301-7381381 ( 11) GGTCACTA 1 chrV:11953207-11953287 ( 32) GGTCATGC 1 chrIII:9089912-9089992 ( 52) GGTCATGA 1 chrIV:3755711-3755791 ( 50) TGTCATTT 1 chrX:17480654-17480734 ( 56) TGTCATCT 1 chrV:11698671-11698751 ( 69) TGTCATCT 1 chrI:8633332-8633412 ( 29) GGTCATGA 1 chrI:5822709-5822789 ( 66) GGTCATAA 1 chrX:11370257-11370337 ( 71) TGTCACCT 1 chrIII:5983928-5984008 ( 53) GGTCACAA 1 chrI:3992793-3992873 ( 64) GGTCACAA 1 chrI:6276824-6276904 ( 44) TGTCAATT 1 chrV:1556401-1556481 ( 9) GGTCAGAT 1 chrI:441367-441447 ( 62) GGTCAAAC 1 chrX:7915781-7915861 ( 1) GGTCACAC 1 chrIV:10241829-10241909 ( 32) GGTCACAC 1 chrIV:6134798-6134878 ( 23) TGTCACTT 1 chrX:2989863-2989943 ( 14) GGTCAGGT 1 chrX:4812599-4812679 ( 33) TGTCAATT 1 chrV:1250028-1250108 ( 6) GGTCAGAT 1 chrIV:16006439-16006519 ( 72) GGTCAGAT 1 chrV:20067240-20067320 ( 31) TGTCATGT 1 chrIII:9072957-9073037 ( 1) TGTCATAT 1 chrI:11200337-11200417 ( 61) GGTCAGCC 1 chrX:12987089-12987169 ( 10) GGTCAGCA 1 chrII:9724623-9724703 ( 48) GGTCAGCA 1 chrX:10503562-10503642 ( 17) TGTCATTC 1 chrI:5218627-5218707 ( 56) TGTCAAGT 1 chrI:10363106-10363186 ( 26) TGTCACAT 1 chrX:696402-696482 ( 59) TGTCATCA 1 chrI:5820573-5820653 ( 8) TGTCACTC 1 chrIV:2426597-2426677 ( 35) TGTCACCC 1 chrIII:11452690-11452770 ( 17) TGTCAATA 1 chrX:8661078-8661158 ( 34) TGTCAATA 1 chrII:6415222-6415302 ( 23) TGTCAATC 1 chrIV:14297208-14297288 ( 69) GGTCAGAC 1 chrI:7198382-7198462 ( 10) TGTCAACA 1 chrI:8768210-8768290 ( 50) TGTCAGCT 1 chrI:5214145-5214225 ( 26) TGTCAACA 1 chrI:14150115-14150195 ( 20) TGTCAGTT 1 chrII:13856847-13856927 ( 71) TGTCATGA 1 chrX:14190881-14190961 ( 34) TGTCATAA 1 chrII:5745269-5745349 ( 55) TGTCATAA 1 chrX:16524471-16524551 ( 38) TGTCATAA 1 chrIV:1033590-1033670 ( 47) TGTCAAGA 1 chrIV:554136-554216 ( 43) TGTCACAA 1 chrIII:5244554-5244634 ( 1) TGTCACAC 1 chrIV:153931-154011 ( 73) TGTCAGAT 1 chrII:4565675-4565755 ( 8) TGTCAGGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KGTCAHNW MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.18043 E= 2.0e-008 -1318 -1318 160 27 -1318 -1318 219 -1318 -1318 -1318 -1318 185 -1318 217 -1318 -1318 183 -1318 -1318 -1318 10 2 -77 31 -25 21 -27 22 10 2 -1318 77 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KGTCAHNW MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 93 E= 2.0e-008 0.000000 0.000000 0.666667 0.333333 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.301075 0.225806 0.129032 0.344086 0.236559 0.258065 0.182796 0.322581 0.301075 0.225806 0.000000 0.473118 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KGTCAHNW MEME-2 regular expression -------------------------------------------------------------------------------- [GT]GTCA[TAC][TCA][TAC] -------------------------------------------------------------------------------- Time 11.64 secs. ******************************************************************************** ******************************************************************************** MOTIF TGACCTBT MEME-3 width = 8 sites = 60 llr = 441 E-value = 2.6e-002 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGACCTBT MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::a13::2 pos.-specific C :::97221 probability G :a:::24: matrix T a::::647 bits 2.2 * 2.0 * 1.7 *** 1.5 **** Relative 1.3 ***** Entropy 1.1 ***** (10.6 bits) 0.9 ***** * 0.7 ****** * 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TGACCTGT consensus AGTA sequence CC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGACCTBT MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrI:5820573-5820653 42 1.44e-05 CGTCACAAGG TGACCTGT TTCTACGTAT chrIII:11447009-11447089 37 1.44e-05 TCTCTTGATT TGACCTGT CGCGCGGTCA chrII:15261801-15261881 13 1.44e-05 CAAAGAAGTT TGACCTGT TAAGTCCCCT chrIV:12376149-12376229 17 3.25e-05 CCGTAGCAGT TGACCTTT CCAAGAGGTA chrX:696402-696482 11 3.25e-05 CATGCCAGTG TGACCTTT TGCACAGAGT chrIV:10251949-10252029 15 3.25e-05 TTGATCTATC TGACCTTT TCGTGTTACT chrX:12092776-12092856 25 5.85e-05 TGTCCGTTGC TGACCTCT TACACACACC chrIV:14297208-14297288 28 5.85e-05 AAGGTGTCCA TGACCTCT TAGCACCCAT chrX:15309298-15309378 49 5.85e-05 CATACATTAA TGACCTCT GATTAATGAG chrI:14084299-14084379 47 5.85e-05 TATGGCTGAT TGACCTCT GAAGAGCCAG chrX:13017811-13017891 39 5.85e-05 CGTACTGTTT TGACCTCT TACGTGTCTA chrI:14957731-14957811 48 5.85e-05 CATATTTGTA TGACCGGT AAGGTAATTC chrV:3456281-3456361 71 8.44e-05 TATTGGCACT TGACCGTT AT chrI:10363106-10363186 34 8.44e-05 ACTGTCACAT TGACCGTT CCTTTTTTCT chrV:14370967-14371047 43 8.44e-05 GACCAGATAT TGACCGTT TTTGGAATCT chrIII:5245226-5245306 50 8.44e-05 TCATAGCTGT TGACCGTT AAATGAGCAT chrIII:8767619-8767699 51 1.14e-04 GTTCTGTACT TGACCTGA CTAACTAAGG chrII:302184-302264 53 1.14e-04 ATTTGAACCT TGACCCTT GTTACGTCTC chrIV:1033590-1033670 33 1.14e-04 CCTCCCCCGT TGACCCTT CAAGGGTGTC chrI:5822709-5822789 29 1.14e-04 GCAGGCAGAT TGACCTGA TTATGTAACG chrIII:11360909-11360989 4 1.14e-04 GAA TGACCCTT GAAAAGGCGA chrII:14706108-14706188 43 1.14e-04 TGGATGGCAT TGACCTGA TCATAAACTA chrII:4814823-4814903 44 1.14e-04 AGTCCTCAGA TGACCCTT TAACGGCTGG chrX:14187995-14188075 29 1.43e-04 CAATAAAAAC TGACATGT TGCTAGTAAA chrII:2194894-2194974 52 1.43e-04 AATCACCTGT TGACCGCT TGAGTGGGTG chrII:2095085-2095165 71 1.73e-04 CACAGGCTGT TGACCTTA AC chrII:5016284-5016364 33 1.73e-04 GTTGACCACC TGACCCCT TCTTATAATA chrIII:6477801-6477881 46 1.96e-04 AGGTGTTTTT TGACATTT TAGGAAGGTG chrIII:6479654-6479734 41 1.96e-04 GCGCTAAATA TGACATTT TTGCACATAA chrI:10361234-10361314 43 1.96e-04 AACTACTAGT TGACATTT GATACGTGGA chrX:2926983-2927063 54 2.23e-04 TATTTGATTG TGACCTCA TATTTAAGAC chrII:13856847-13856927 13 2.23e-04 AACGGATAAA TGACCTCA TTGACAGTGC chrX:1915185-1915265 1 2.23e-04 . TGACCTCA ATAAATTCTG chrV:5325773-5325853 9 2.55e-04 AGAGATGG TGACAGGT GTGAAATTGA chrIII:2903009-2903089 35 2.55e-04 AGTCGGCATG TGACAGGT GCCTCTCCCC chrI:439474-439554 48 2.67e-04 ACTTCCCACT TGACCCGA TTTGTGCACA chrII:7381301-7381381 42 2.67e-04 AAACGATATT TGACCCGA GAAAAGAGGC chrI:9543360-9543440 30 2.96e-04 TCATACATCA TGACACGT GTCTACAAAA chrI:6279833-6279913 41 2.96e-04 AAGTGGGTAC TGACACGT GGCAGAAGTG chrIII:12092754-12092834 16 2.96e-04 TGTTGATCGA TGACACGT ATACACCTGC chrI:4033611-4033691 40 3.26e-04 GATCGACACT TGACAGTT ACTATCATTG chrX:3972462-3972542 30 3.26e-04 ACATAAACAA TGACAGTT ATCGTCTCCT chrIII:966418-966498 25 3.26e-04 CTGCTGTGCC TGACCTGC CATCTTACAC chrIV:5523599-5523679 31 3.26e-04 AATATAATAA TGACAGTT ACATTTGGGT chrX:7426470-7426550 36 3.26e-04 CACCATCGGT TGACAGTT TGTTGAGCAC chrIV:5971275-5971355 41 3.59e-04 TGAATGGCCA TGACCCTA CCATTATTCT chrIV:3755711-3755791 38 3.59e-04 TCAAGGTTGG TGAACTGT CGGCTGTCAT chrX:12618593-12618673 72 3.59e-04 CCTCCTTATA TGAACTGT C chrV:1556401-1556481 70 3.59e-04 AATGTGAGAG TGAACTGT TAT chrV:14504065-14504145 27 3.59e-04 ACCATTGAAA TGAACTGT GTTAGGTAAC chrIII:5795156-5795236 1 3.59e-04 . TGAACTGT CGTGACGTAA chrIII:9072957-9073037 39 3.59e-04 CCGGCAACTT TGAACTGT CGTCGACGGA chrII:12990313-12990393 24 4.07e-04 CTGTAAATAG TGACATGA CAGCCCAGGT chrX:7640969-7641049 20 4.07e-04 TCGATCAAGA TGACCGCA GATAACCTTC chrIII:5526132-5526212 60 4.36e-04 ACCCTTCAAA TGACCTTC AACATACCTT chrIV:9607030-9607110 10 4.71e-04 CTCGACTTA TGAACTTT CCTAGATTAC chrX:10991820-10991900 9 5.09e-04 TGTTTGCT TGACATTA CCAACTATAT chrIV:5857033-5857113 28 5.09e-04 TGTTCCGCTT TGACACCT TCTACACATT chrI:13241500-13241580 47 5.30e-04 GAACGCGTCC TGACCTCC CAAACAGTCG chrII:9644597-9644677 11 5.30e-04 CACATAATGA TGACCGGC TAAGAGAATG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGACCTBT MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:5820573-5820653 1.4e-05 41_[+3]_31 chrIII:11447009-11447089 1.4e-05 36_[+3]_36 chrII:15261801-15261881 1.4e-05 12_[+3]_60 chrIV:12376149-12376229 3.2e-05 16_[+3]_56 chrX:696402-696482 3.2e-05 10_[+3]_62 chrIV:10251949-10252029 3.2e-05 14_[+3]_58 chrX:12092776-12092856 5.8e-05 24_[+3]_48 chrIV:14297208-14297288 5.8e-05 27_[+3]_45 chrX:15309298-15309378 5.8e-05 48_[+3]_24 chrI:14084299-14084379 5.8e-05 46_[+3]_26 chrX:13017811-13017891 5.8e-05 38_[+3]_34 chrI:14957731-14957811 5.8e-05 47_[+3]_25 chrV:3456281-3456361 8.4e-05 70_[+3]_2 chrI:10363106-10363186 8.4e-05 33_[+3]_39 chrV:14370967-14371047 8.4e-05 42_[+3]_30 chrIII:5245226-5245306 8.4e-05 49_[+3]_23 chrIII:8767619-8767699 0.00011 50_[+3]_22 chrII:302184-302264 0.00011 52_[+3]_20 chrIV:1033590-1033670 0.00011 32_[+3]_40 chrI:5822709-5822789 0.00011 28_[+3]_44 chrIII:11360909-11360989 0.00011 3_[+3]_69 chrII:14706108-14706188 0.00011 42_[+3]_30 chrII:4814823-4814903 0.00011 43_[+3]_29 chrX:14187995-14188075 0.00014 28_[+3]_44 chrII:2194894-2194974 0.00014 51_[+3]_21 chrII:2095085-2095165 0.00017 70_[+3]_2 chrII:5016284-5016364 0.00017 32_[+3]_40 chrIII:6477801-6477881 0.0002 45_[+3]_27 chrIII:6479654-6479734 0.0002 40_[+3]_32 chrI:10361234-10361314 0.0002 42_[+3]_30 chrX:2926983-2927063 0.00022 53_[+3]_19 chrII:13856847-13856927 0.00022 12_[+3]_60 chrX:1915185-1915265 0.00022 [+3]_72 chrV:5325773-5325853 0.00026 8_[+3]_64 chrIII:2903009-2903089 0.00026 34_[+3]_38 chrI:439474-439554 0.00027 47_[+3]_25 chrII:7381301-7381381 0.00027 41_[+3]_31 chrI:9543360-9543440 0.0003 29_[+3]_43 chrI:6279833-6279913 0.0003 40_[+3]_32 chrIII:12092754-12092834 0.0003 15_[+3]_57 chrI:4033611-4033691 0.00033 39_[+3]_33 chrX:3972462-3972542 0.00033 29_[+3]_43 chrIII:966418-966498 0.00033 24_[+3]_48 chrIV:5523599-5523679 0.00033 30_[+3]_42 chrX:7426470-7426550 0.00033 35_[+3]_37 chrIV:5971275-5971355 0.00036 40_[+3]_32 chrIV:3755711-3755791 0.00036 37_[+3]_35 chrX:12618593-12618673 0.00036 71_[+3]_1 chrV:1556401-1556481 0.00036 69_[+3]_3 chrV:14504065-14504145 0.00036 26_[+3]_46 chrIII:5795156-5795236 0.00036 [+3]_72 chrIII:9072957-9073037 0.00036 38_[+3]_34 chrII:12990313-12990393 0.00041 23_[+3]_49 chrX:7640969-7641049 0.00041 19_[+3]_53 chrIII:5526132-5526212 0.00044 59_[+3]_13 chrIV:9607030-9607110 0.00047 9_[+3]_63 chrX:10991820-10991900 0.00051 8_[+3]_64 chrIV:5857033-5857113 0.00051 27_[+3]_45 chrI:13241500-13241580 0.00053 46_[+3]_26 chrII:9644597-9644677 0.00053 10_[+3]_62 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGACCTBT MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGACCTBT width=8 seqs=60 chrI:5820573-5820653 ( 42) TGACCTGT 1 chrIII:11447009-11447089 ( 37) TGACCTGT 1 chrII:15261801-15261881 ( 13) TGACCTGT 1 chrIV:12376149-12376229 ( 17) TGACCTTT 1 chrX:696402-696482 ( 11) TGACCTTT 1 chrIV:10251949-10252029 ( 15) TGACCTTT 1 chrX:12092776-12092856 ( 25) TGACCTCT 1 chrIV:14297208-14297288 ( 28) TGACCTCT 1 chrX:15309298-15309378 ( 49) TGACCTCT 1 chrI:14084299-14084379 ( 47) TGACCTCT 1 chrX:13017811-13017891 ( 39) TGACCTCT 1 chrI:14957731-14957811 ( 48) TGACCGGT 1 chrV:3456281-3456361 ( 71) TGACCGTT 1 chrI:10363106-10363186 ( 34) TGACCGTT 1 chrV:14370967-14371047 ( 43) TGACCGTT 1 chrIII:5245226-5245306 ( 50) TGACCGTT 1 chrIII:8767619-8767699 ( 51) TGACCTGA 1 chrII:302184-302264 ( 53) TGACCCTT 1 chrIV:1033590-1033670 ( 33) TGACCCTT 1 chrI:5822709-5822789 ( 29) TGACCTGA 1 chrIII:11360909-11360989 ( 4) TGACCCTT 1 chrII:14706108-14706188 ( 43) TGACCTGA 1 chrII:4814823-4814903 ( 44) TGACCCTT 1 chrX:14187995-14188075 ( 29) TGACATGT 1 chrII:2194894-2194974 ( 52) TGACCGCT 1 chrII:2095085-2095165 ( 71) TGACCTTA 1 chrII:5016284-5016364 ( 33) TGACCCCT 1 chrIII:6477801-6477881 ( 46) TGACATTT 1 chrIII:6479654-6479734 ( 41) TGACATTT 1 chrI:10361234-10361314 ( 43) TGACATTT 1 chrX:2926983-2927063 ( 54) TGACCTCA 1 chrII:13856847-13856927 ( 13) TGACCTCA 1 chrX:1915185-1915265 ( 1) TGACCTCA 1 chrV:5325773-5325853 ( 9) TGACAGGT 1 chrIII:2903009-2903089 ( 35) TGACAGGT 1 chrI:439474-439554 ( 48) TGACCCGA 1 chrII:7381301-7381381 ( 42) TGACCCGA 1 chrI:9543360-9543440 ( 30) TGACACGT 1 chrI:6279833-6279913 ( 41) TGACACGT 1 chrIII:12092754-12092834 ( 16) TGACACGT 1 chrI:4033611-4033691 ( 40) TGACAGTT 1 chrX:3972462-3972542 ( 30) TGACAGTT 1 chrIII:966418-966498 ( 25) TGACCTGC 1 chrIV:5523599-5523679 ( 31) TGACAGTT 1 chrX:7426470-7426550 ( 36) TGACAGTT 1 chrIV:5971275-5971355 ( 41) TGACCCTA 1 chrIV:3755711-3755791 ( 38) TGAACTGT 1 chrX:12618593-12618673 ( 72) TGAACTGT 1 chrV:1556401-1556481 ( 70) TGAACTGT 1 chrV:14504065-14504145 ( 27) TGAACTGT 1 chrIII:5795156-5795236 ( 1) TGAACTGT 1 chrIII:9072957-9073037 ( 39) TGAACTGT 1 chrII:12990313-12990393 ( 24) TGACATGA 1 chrX:7640969-7641049 ( 20) TGACCGCA 1 chrIII:5526132-5526212 ( 60) TGACCTTC 1 chrIV:9607030-9607110 ( 10) TGAACTTT 1 chrX:10991820-10991900 ( 9) TGACATTA 1 chrIV:5857033-5857113 ( 28) TGACACCT 1 chrI:13241500-13241580 ( 47) TGACCTCC 1 chrII:9644597-9644677 ( 11) TGACCGGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGACCTBT MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.91997 E= 2.6e-002 -1255 -1255 -1255 185 -1255 -1255 219 -1255 183 -1255 -1255 -1255 -127 199 -1255 -1255 -8 172 -1255 -1255 -1255 -15 9 103 -1255 -4 86 47 -37 -174 -1255 137 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGACCTBT MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 60 E= 2.6e-002 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.116667 0.883333 0.000000 0.000000 0.266667 0.733333 0.000000 0.000000 0.000000 0.200000 0.233333 0.566667 0.000000 0.216667 0.400000 0.383333 0.216667 0.066667 0.000000 0.716667 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGACCTBT MEME-3 regular expression -------------------------------------------------------------------------------- TGAC[CA][TGC][GTC][TA] -------------------------------------------------------------------------------- Time 15.09 secs. ******************************************************************************** ******************************************************************************** MOTIF RRMAGGTG MEME-4 width = 8 sites = 22 llr = 198 E-value = 2.7e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif RRMAGGTG MEME-4 Description -------------------------------------------------------------------------------- Simplified A 545a:::: pos.-specific C :15::::: probability G 55::aa:a matrix T ::::::a: bits 2.2 ** * 2.0 ** * 1.7 ***** 1.5 ***** Relative 1.3 ***** Entropy 1.1 * ****** (13.0 bits) 0.9 * ****** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GGAAGGTG consensus AAC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RRMAGGTG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIII:6477801-6477881 56 2.02e-05 TGACATTTTA GGAAGGTG AGACGAAAAA chrX:14183013-14183093 27 2.02e-05 CAATACGGGC GGAAGGTG TTAGAGAAAG chrIII:5983928-5984008 18 2.02e-05 AGAATACAGG GGCAGGTG GTACGAAGAA chrX:17325120-17325200 35 2.02e-05 GACGCAACCG GGAAGGTG ACGTAACTTC chrX:3316024-3316104 14 2.02e-05 ACCGATTAGG GGCAGGTG CATGTGTAAT chrIV:3771912-3771992 70 2.02e-05 TCATCAGGCA GGCAGGTG CAA chrV:7742082-7742162 31 2.02e-05 GATGCAACTT GGCAGGTG ATGAATTGTG chrIV:11568996-11569076 18 4.60e-05 GGCCACTACG AGAAGGTG CCAATTGGAA chrI:9543360-9543440 72 4.60e-05 GAAGAACTTT AGCAGGTG G chrIV:1032670-1032750 47 4.60e-05 CTAGGTAAAC AGAAGGTG ATGATACTTT chrI:12476157-12476237 43 4.60e-05 CTGGTAGGCA AGCAGGTG GTAACAGAGA chrX:7967072-7967152 45 4.60e-05 TGTTGCCCAT AGCAGGTG CGCATCGTAT chrV:14363328-14363408 45 7.19e-05 ATTGTCGGTA GAAAGGTG AAGAGCGGGT chrII:14429009-14429089 46 7.19e-05 GAGGTTAGGT GAAAGGTG AGAGGAGTAG chrII:14706108-14706188 27 7.19e-05 GAAGAGGGAA GAAAGGTG GATGGCATTG chrIII:6828768-6828848 46 1.05e-04 GCGGTGTGGA AAAAGGTG AAAAAAGAAG chrX:6897180-6897260 27 1.05e-04 ATATCTTGGC AACAGGTG CAGTGAGTCG chrIV:14297208-14297288 16 1.05e-04 GTCAATTGAG AAAAGGTG TCCATGACCT chrI:14032389-14032469 27 1.05e-04 CTTCCAATGC AAAAGGTG GTTGTAAATG chrIII:5795156-5795236 53 1.05e-04 AGAATCCATG AACAGGTG ATGACACCAA chrX:17480654-17480734 45 1.25e-04 GGTGGGGTCA GCAAGGTG ACCTGTCATC chrV:4525702-4525782 48 1.25e-04 GACACCACTA GCCAGGTG TGAACTGAAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RRMAGGTG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:6477801-6477881 2e-05 55_[+4]_17 chrX:14183013-14183093 2e-05 26_[+4]_46 chrIII:5983928-5984008 2e-05 17_[+4]_55 chrX:17325120-17325200 2e-05 34_[+4]_38 chrX:3316024-3316104 2e-05 13_[+4]_59 chrIV:3771912-3771992 2e-05 69_[+4]_3 chrV:7742082-7742162 2e-05 30_[+4]_42 chrIV:11568996-11569076 4.6e-05 17_[+4]_55 chrI:9543360-9543440 4.6e-05 71_[+4]_1 chrIV:1032670-1032750 4.6e-05 46_[+4]_26 chrI:12476157-12476237 4.6e-05 42_[+4]_30 chrX:7967072-7967152 4.6e-05 44_[+4]_28 chrV:14363328-14363408 7.2e-05 44_[+4]_28 chrII:14429009-14429089 7.2e-05 45_[+4]_27 chrII:14706108-14706188 7.2e-05 26_[+4]_46 chrIII:6828768-6828848 0.0001 45_[+4]_27 chrX:6897180-6897260 0.0001 26_[+4]_46 chrIV:14297208-14297288 0.0001 15_[+4]_57 chrI:14032389-14032469 0.0001 26_[+4]_46 chrIII:5795156-5795236 0.0001 52_[+4]_20 chrX:17480654-17480734 0.00013 44_[+4]_28 chrV:4525702-4525782 0.00013 47_[+4]_25 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RRMAGGTG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RRMAGGTG width=8 seqs=22 chrIII:6477801-6477881 ( 56) GGAAGGTG 1 chrX:14183013-14183093 ( 27) GGAAGGTG 1 chrIII:5983928-5984008 ( 18) GGCAGGTG 1 chrX:17325120-17325200 ( 35) GGAAGGTG 1 chrX:3316024-3316104 ( 14) GGCAGGTG 1 chrIV:3771912-3771992 ( 70) GGCAGGTG 1 chrV:7742082-7742162 ( 31) GGCAGGTG 1 chrIV:11568996-11569076 ( 18) AGAAGGTG 1 chrI:9543360-9543440 ( 72) AGCAGGTG 1 chrIV:1032670-1032750 ( 47) AGAAGGTG 1 chrI:12476157-12476237 ( 43) AGCAGGTG 1 chrX:7967072-7967152 ( 45) AGCAGGTG 1 chrV:14363328-14363408 ( 45) GAAAGGTG 1 chrII:14429009-14429089 ( 46) GAAAGGTG 1 chrII:14706108-14706188 ( 27) GAAAGGTG 1 chrIII:6828768-6828848 ( 46) AAAAGGTG 1 chrX:6897180-6897260 ( 27) AACAGGTG 1 chrIV:14297208-14297288 ( 16) AAAAGGTG 1 chrI:14032389-14032469 ( 27) AAAAGGTG 1 chrIII:5795156-5795236 ( 53) AACAGGTG 1 chrX:17480654-17480734 ( 45) GCAAGGTG 1 chrV:4525702-4525782 ( 48) GCCAGGTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RRMAGGTG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.229 E= 2.7e+001 69 -1110 131 -1110 37 -129 131 -1110 96 103 -1110 -1110 183 -1110 -1110 -1110 -1110 -1110 219 -1110 -1110 -1110 219 -1110 -1110 -1110 -1110 185 -1110 -1110 219 -1110 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RRMAGGTG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 22 E= 2.7e+001 0.454545 0.000000 0.545455 0.000000 0.363636 0.090909 0.545455 0.000000 0.545455 0.454545 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RRMAGGTG MEME-4 regular expression -------------------------------------------------------------------------------- [GA][GA][AC]AGGTG -------------------------------------------------------------------------------- Time 18.44 secs. ******************************************************************************** ******************************************************************************** MOTIF CCTCCCCC MEME-5 width = 8 sites = 16 llr = 150 E-value = 2.3e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCTCCCCC MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::2:: pos.-specific C 8a2aa8a9 probability G ::1::::1 matrix T 3:8::1:: bits 2.2 * ** * 2.0 * ** * 1.7 * ** * 1.5 * ** ** Relative 1.3 ** ** ** Entropy 1.1 ** ***** (13.6 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CCTCCCCC consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTCCCCC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIV:1033590-1033670 23 7.60e-06 CTTCTCCCAC CCTCCCCC GTTGACCCTT chrIII:2093720-2093800 59 7.60e-06 AACACACAAA CCTCCCCC GTCCGCCTCT chrIV:3497582-3497662 41 7.60e-06 TCCCCCCCCC CCTCCCCC CTACTGGGGG chrX:3972462-3972542 50 7.60e-06 CGTCTCCTTT CCTCCCCC TCTCCCCATG chrI:14032389-14032469 10 7.60e-06 CACTGTTGT CCTCCCCC TTCCAATGCA chrIV:2318443-2318523 41 7.60e-06 AAGGTCATCA CCTCCCCC CACCATTATT chrX:3555781-3555861 31 1.37e-05 TTCCCATCTC CCCCCCCC TTTTCTCCCT chrI:1126348-1126428 7 2.31e-05 CACACC TCTCCCCC ATCTCAACAC chrIII:2903009-2903089 46 2.31e-05 GACAGGTGCC TCTCCCCC GTCTCAAGAA chrII:4565675-4565755 32 3.27e-05 CTAATCTCCA CCTCCACC CGGTTACAAT chrIII:9993696-9993776 4 4.62e-05 ACT CCGCCCCC TCTTGCTCTC chrIII:7621509-7621589 9 7.10e-05 CATTACCG CCTCCTCC AGAATACCCG chrX:13017811-13017891 20 7.10e-05 AATTATCGCA CCCCCACC GCGTACTGTT chrI:5218627-5218707 13 8.29e-05 ACTTAACCTT TCTCCACC TGTTGACTCA chrV:18594812-18594892 16 8.89e-05 TGGTTCAAGA CCCCCCCG CCAAAATAGT chrIII:6027790-6027870 70 9.82e-05 TTTAGGATAA TCTCCCCG TTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTCCCCC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:1033590-1033670 7.6e-06 22_[+5]_50 chrIII:2093720-2093800 7.6e-06 58_[+5]_14 chrIV:3497582-3497662 7.6e-06 40_[+5]_32 chrX:3972462-3972542 7.6e-06 49_[+5]_23 chrI:14032389-14032469 7.6e-06 9_[+5]_63 chrIV:2318443-2318523 7.6e-06 40_[+5]_32 chrX:3555781-3555861 1.4e-05 30_[+5]_42 chrI:1126348-1126428 2.3e-05 6_[+5]_66 chrIII:2903009-2903089 2.3e-05 45_[+5]_27 chrII:4565675-4565755 3.3e-05 31_[+5]_41 chrIII:9993696-9993776 4.6e-05 3_[+5]_69 chrIII:7621509-7621589 7.1e-05 8_[+5]_64 chrX:13017811-13017891 7.1e-05 19_[+5]_53 chrI:5218627-5218707 8.3e-05 12_[+5]_60 chrV:18594812-18594892 8.9e-05 15_[+5]_57 chrIII:6027790-6027870 9.8e-05 69_[+5]_3 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTCCCCC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCTCCCCC width=8 seqs=16 chrIV:1033590-1033670 ( 23) CCTCCCCC 1 chrIII:2093720-2093800 ( 59) CCTCCCCC 1 chrIV:3497582-3497662 ( 41) CCTCCCCC 1 chrX:3972462-3972542 ( 50) CCTCCCCC 1 chrI:14032389-14032469 ( 10) CCTCCCCC 1 chrIV:2318443-2318523 ( 41) CCTCCCCC 1 chrX:3555781-3555861 ( 31) CCCCCCCC 1 chrI:1126348-1126428 ( 7) TCTCCCCC 1 chrIII:2903009-2903089 ( 46) TCTCCCCC 1 chrII:4565675-4565755 ( 32) CCTCCACC 1 chrIII:9993696-9993776 ( 4) CCGCCCCC 1 chrIII:7621509-7621589 ( 9) CCTCCTCC 1 chrX:13017811-13017891 ( 20) CCCCCACC 1 chrI:5218627-5218707 ( 13) TCTCCACC 1 chrV:18594812-18594892 ( 16) CCCCCCCG 1 chrIII:6027790-6027870 ( 70) TCTCCCCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTCCCCC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.477 E= 2.3e+003 -1064 175 -1064 -15 -1064 217 -1064 -1064 -1064 -25 -181 144 -1064 217 -1064 -1064 -1064 217 -1064 -1064 -58 175 -1064 -214 -1064 217 -1064 -1064 -1064 197 -81 -1064 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTCCCCC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 16 E= 2.3e+003 0.000000 0.750000 0.000000 0.250000 0.000000 1.000000 0.000000 0.000000 0.000000 0.187500 0.062500 0.750000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.187500 0.750000 0.000000 0.062500 0.000000 1.000000 0.000000 0.000000 0.000000 0.875000 0.125000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTCCCCC MEME-5 regular expression -------------------------------------------------------------------------------- [CT]CTCCCCC -------------------------------------------------------------------------------- Time 21.74 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:14959552-14959632 8.64e-03 36_[+2(3.22e-05)]_36 chrII:6437004-6437084 4.36e-02 80 chrIII:4806504-4806584 7.57e-02 45_[+1(5.13e-05)]_27 chrIII:12092754-12092834 1.96e-01 80 chrII:9644597-9644677 3.86e-02 69_[+2(9.09e-05)]_3 chrII:5777531-5777611 8.11e-02 80 chrIII:304702-304782 1.29e-01 80 chrX:394868-394948 2.90e-01 80 chrIII:5245226-5245306 6.41e-02 49_[+3(8.44e-05)]_23 chrIII:8620418-8620498 3.81e-02 80 chrII:9724623-9724703 1.83e-02 51_[+4(4.60e-05)]_21 chrIV:12133935-12134015 2.73e-01 80 chrIII:9072957-9073037 4.99e-02 80 chrI:14150115-14150195 3.77e-02 80 chrIII:2976899-2976979 5.78e-01 80 chrX:698669-698749 7.32e-02 70_[+2(9.09e-05)]_2 chrX:7426470-7426550 1.07e-01 80 chrI:5219159-5219239 1.32e-01 80 chrV:18594812-18594892 2.63e-02 15_[+5(8.89e-05)]_57 chrI:5723884-5723964 1.28e-02 80 chrI:9922862-9922942 8.64e-01 80 chrX:3400551-3400631 5.58e-01 80 chrX:14194876-14194956 5.21e-01 80 chrV:14370967-14371047 1.26e-01 42_[+3(8.44e-05)]_30 chrI:14957731-14957811 4.04e-03 47_[+3(5.85e-05)]_25 chrIV:16006439-16006519 1.26e-01 80 chrV:11711345-11711425 2.71e-01 80 chrX:7967072-7967152 5.05e-03 44_[+4(4.60e-05)]_28 chrV:11948440-11948520 4.20e-01 80 chrIV:6983892-6983972 3.54e-02 80 chrIV:153931-154011 1.04e-01 80 chrI:12476157-12476237 6.14e-02 42_[+4(4.60e-05)]_30 chrIV:2318443-2318523 7.68e-04 40_[+5(7.60e-06)]_32 chrI:6279833-6279913 9.95e-03 80 chrI:5214145-5214225 1.15e-02 80 chrX:2429622-2429702 1.91e-01 80 chrIV:11720694-11720774 7.01e-01 80 chrIV:1032670-1032750 3.55e-04 30_[+2(9.09e-05)]_8_[+4(4.60e-05)]_\ 26 chrI:7196081-7196161 7.24e-02 15_[+1(7.45e-05)]_57 chrIII:1767567-1767647 8.81e-01 80 chrI:8768210-8768290 1.78e-01 80 chrV:1250028-1250108 1.44e-01 80 chrV:4526325-4526405 4.43e-01 80 chrIII:6048802-6048882 2.82e-01 80 chrI:5821262-5821342 1.29e-01 80 chrII:11796281-11796361 3.20e-01 80 chrV:7742082-7742162 1.06e-02 30_[+4(2.02e-05)]_42 chrIII:9696377-9696457 5.91e-02 48_[+2(9.09e-05)]_24 chrIII:5526132-5526212 2.38e-01 80 chrX:4812599-4812679 4.54e-01 80 chrV:12647455-12647535 2.35e-01 80 chrI:10667830-10667910 4.55e-01 80 chrIV:13945368-13945448 9.70e-03 53_[+2(9.09e-05)]_19 chrX:13017811-13017891 1.01e-02 19_[+5(7.10e-05)]_11_[+3(5.85e-05)]_\ 34 chrI:14084299-14084379 6.97e-02 3_[+3(5.85e-05)]_35_[+3(5.85e-05)]_\ 26 chrIII:8622599-8622679 7.95e-01 80 chrX:2989863-2989943 9.10e-02 80 chrIII:5795156-5795236 1.99e-03 80 chrI:1125028-1125108 4.83e-02 42_[+1(5.13e-05)]_30 chrIII:7621509-7621589 2.03e-01 8_[+5(7.10e-05)]_64 chrIII:2903009-2903089 3.89e-04 35_[+4(7.19e-05)]_2_[+5(2.31e-05)]_\ 27 chrIV:149973-150053 1.06e-01 80 chrII:4969932-4970012 8.09e-02 80 chrIV:10251949-10252029 1.97e-01 14_[+3(3.25e-05)]_58 chrX:7640969-7641049 1.03e-01 80 chrII:4814823-4814903 1.07e-01 80 chrIV:10745491-10745571 6.13e-01 80 chrIII:5244554-5244634 2.45e-01 80 chrIV:6134798-6134878 1.16e-03 67_[+1(7.45e-05)]_5 chrIV:10241829-10241909 2.33e-01 80 chrX:7915781-7915861 4.24e-02 80 chrII:14706108-14706188 1.40e-02 26_[+4(7.19e-05)]_46 chrX:6888366-6888446 7.08e-01 80 chrIV:5523599-5523679 2.98e-01 80 chrX:696402-696482 4.42e-04 10_[+3(3.25e-05)]_9_[+1(1.46e-05)]_\ 45 chrI:13241500-13241580 6.08e-02 80 chrI:10363106-10363186 1.03e-03 33_[+3(8.44e-05)]_29_[+1(7.45e-05)]_\ 2 chrI:9543360-9543440 9.99e-03 71_[+4(4.60e-05)]_1 chrX:10520306-10520386 6.00e-03 67_[+2(3.22e-05)]_5 chrV:240446-240526 3.07e-02 80 chrI:14032389-14032469 3.96e-04 9_[+5(7.60e-06)]_63 chrX:16524471-16524551 7.83e-02 80 chrII:7381301-7381381 1.34e-02 80 chrII:15261801-15261881 6.66e-04 12_[+3(1.44e-05)]_60 chrI:10361234-10361314 3.73e-02 80 chrIII:966418-966498 2.03e-01 80 chrI:2964499-2964579 1.85e-01 80 chrI:9558151-9558231 9.72e-01 80 chrIII:6479654-6479734 9.01e-03 80 chrIII:5151134-5151214 6.10e-02 80 chrV:20751289-20751369 6.90e-01 80 chrI:439474-439554 7.62e-02 80 chrIV:5500358-5500438 3.40e-02 80 chrI:8766507-8766587 1.02e-02 58_[+1(5.13e-05)]_14 chrV:14372021-14372101 5.52e-01 80 chrX:5697871-5697951 1.20e-02 80 chrII:5745269-5745349 7.28e-02 80 chrX:12987089-12987169 2.49e-01 80 chrV:14436359-14436439 7.68e-02 80 chrX:10629295-10629375 1.06e-01 80 chrIII:13222679-13222759 2.40e-01 80 chrIV:9607030-9607110 3.07e-01 80 chrII:7570967-7571047 4.70e-02 80 chrX:15309298-15309378 9.22e-02 48_[+3(5.85e-05)]_24 chrIV:3844755-3844835 8.73e-03 4_[+1(1.46e-05)]_68 chrIV:3771912-3771992 1.96e-02 69_[+4(2.02e-05)]_3 chrIII:11360909-11360989 5.61e-02 80 chrI:7198382-7198462 1.67e-01 80 chrX:9230443-9230523 2.01e-01 80 chrI:11200337-11200417 4.79e-03 50_[+1(1.46e-05)]_22 chrX:10516723-10516803 4.75e-02 71_[+2(9.09e-05)]_1 chrI:441367-441447 1.13e-02 80 chrII:8345484-8345564 1.18e-01 80 chrI:8632620-8632700 9.88e-01 80 chrV:13025442-13025522 5.14e-02 80 chrX:13889249-13889329 3.81e-01 80 chrIV:14297208-14297288 3.74e-06 27_[+3(5.85e-05)]_15_[+1(1.46e-05)]_\ 22 chrI:1126348-1126428 1.62e-02 6_[+5(2.31e-05)]_66 chrV:11206595-11206675 8.09e-03 40_[+1(1.46e-05)]_32 chrI:4041043-4041123 3.25e-01 80 chrIII:9993696-9993776 3.78e-03 3_[+5(4.62e-05)]_69 chrV:20067240-20067320 1.66e-02 16_[+1(5.13e-05)]_56 chrV:3447221-3447301 9.84e-01 80 chrV:14504065-14504145 4.24e-02 80 chrX:5705111-5705191 2.25e-01 80 chrX:1223241-1223321 5.02e-01 80 chrIII:5150177-5150257 1.42e-01 80 chrX:3972462-3972542 4.68e-03 49_[+5(7.60e-06)]_23 chrX:3316024-3316104 2.87e-02 13_[+4(2.02e-05)]_59 chrIV:3497582-3497662 1.00e-04 31_[+5(1.37e-05)]_1_[+5(7.60e-06)]_\ 32 chrIII:6826300-6826380 4.20e-01 80 chrII:14429009-14429089 1.09e-03 4_[+1(5.13e-05)]_33_[+4(7.19e-05)]_\ 27 chrII:6415222-6415302 4.71e-01 80 chrX:3733863-3733943 3.02e-01 80 chrV:8660150-8660230 1.18e-03 80 chrI:5822709-5822789 4.09e-03 80 chrX:10502355-10502435 4.40e-01 80 chrX:7563608-7563688 2.87e-01 80 chrIV:8012440-8012520 1.64e-01 80 chrIII:3871911-3871991 1.39e-01 80 chrIV:5857033-5857113 4.43e-01 80 chrI:14962026-14962106 4.43e-02 26_[+1(7.45e-05)]_15_[+1(5.13e-05)]_\ 23 chrII:12978827-12978907 5.63e-01 80 chrII:9964793-9964873 3.99e-02 80 chrX:1915185-1915265 4.50e-03 80 chrI:9545252-9545332 2.29e-01 80 chrI:9914081-9914161 2.49e-01 80 chrV:20075120-20075200 3.26e-02 4_[+2(3.22e-05)]_68 chrII:8903193-8903273 3.50e-02 11_[+1(1.46e-05)]_61 chrI:8633332-8633412 3.53e-03 80 chrIII:5662324-5662404 7.14e-02 80 chrV:1556401-1556481 2.04e-02 80 chrX:8654563-8654643 4.95e-01 80 chrIV:12376149-12376229 1.07e-02 16_[+3(3.25e-05)]_56 chrV:4525702-4525782 8.31e-03 80 chrI:6276824-6276904 3.04e-01 80 chrII:8895531-8895611 2.78e-02 80 chrX:14190881-14190961 1.23e-02 80 chrV:14433713-14433793 1.17e-01 80 chrII:5742558-5742638 4.96e-01 80 chrX:6897180-6897260 1.58e-02 80 chrIV:13716906-13716986 7.70e-04 30_[+4(7.19e-05)]_42 chrI:3089843-3089923 2.71e-02 24_[+2(3.22e-05)]_12_[+2(3.22e-05)]_\ 28 chrIV:3843178-3843258 5.45e-01 80 chrIII:2093720-2093800 2.56e-03 58_[+5(7.60e-06)]_14 chrX:8661078-8661158 3.67e-02 44_[+1(5.13e-05)]_28 chrV:5325773-5325853 1.82e-02 9_[+4(7.19e-05)]_63 chrX:12618593-12618673 1.82e-01 80 chrV:3214831-3214911 2.69e-01 80 chrIII:11447009-11447089 6.87e-04 36_[+3(1.44e-05)]_36 chrIV:554136-554216 5.37e-01 80 chrX:10249874-10249954 3.46e-01 80 chrV:4486752-4486832 3.70e-01 80 chrX:2231491-2231571 3.69e-01 80 chrII:8415179-8415259 3.27e-02 23_[+1(5.13e-05)]_10_[+1(1.46e-05)]_\ 31 chrI:4033611-4033691 2.46e-01 80 chrII:4568347-4568427 7.91e-01 80 chrIII:7716771-7716851 2.49e-01 80 chrI:3992793-3992873 3.04e-01 80 chrX:3061857-3061937 1.02e-02 10_[+1(1.46e-05)]_62 chrX:10844295-10844375 2.18e-01 80 chrIII:5143675-5143755 3.50e-01 80 chrIV:12552099-12552179 2.36e-01 80 chrV:3456281-3456361 7.72e-02 70_[+3(8.44e-05)]_2 chrIV:1033590-1033670 8.19e-05 22_[+5(7.60e-06)]_50 chrX:10991820-10991900 2.84e-01 80 chrIII:9990339-9990419 9.49e-01 80 chrII:302184-302264 1.27e-01 80 chrI:2744376-2744456 2.71e-01 80 chrI:2151847-2151927 5.57e-02 80 chrX:8660461-8660541 1.20e-01 80 chrV:1574767-1574847 2.15e-02 32_[+1(5.13e-05)]_40 chrIII:5142726-5142806 7.34e-01 80 chrX:10927917-10927997 9.83e-01 80 chrX:3310836-3310916 4.33e-01 80 chrX:7968695-7968775 2.70e-01 80 chrX:17325120-17325200 3.70e-03 34_[+4(2.02e-05)]_38 chrII:4565675-4565755 1.32e-03 31_[+5(3.27e-05)]_10_[+1(8.60e-05)]_\ 23 chrIII:5983928-5984008 1.57e-02 17_[+4(2.02e-05)]_55 chrIV:16391627-16391707 1.39e-01 11_[+1(5.13e-05)]_61 chrX:3543362-3543442 7.50e-01 80 chrV:20760766-20760846 3.18e-02 80 chrX:3975693-3975773 1.79e-02 5_[+2(3.22e-05)]_67 chrII:5016284-5016364 4.22e-03 70_[+1(7.45e-05)]_2 chrX:12087310-12087390 6.52e-02 80 chrX:10512715-10512795 1.58e-01 80 chrX:12082488-12082568 8.13e-02 80 chrII:4822790-4822870 2.14e-01 11_[+1(5.13e-05)]_61 chrI:5218627-5218707 2.92e-02 12_[+5(8.29e-05)]_60 chrIII:11452690-11452770 3.64e-01 80 chrIV:12537877-12537957 1.72e-01 80 chrX:4797960-4798040 4.31e-01 80 chrII:14698171-14698251 1.06e-01 80 chrIV:2426597-2426677 1.90e-01 80 chrV:11952162-11952242 6.12e-01 80 chrX:14183013-14183093 4.25e-02 26_[+4(2.02e-05)]_5_[+4(7.19e-05)]_\ 33 chrIII:8767619-8767699 1.35e-02 66_[+2(3.22e-05)]_6 chrX:10503562-10503642 9.23e-02 80 chrX:12092776-12092856 1.29e-01 24_[+3(5.85e-05)]_48 chrII:2194894-2194974 3.75e-02 80 chrIII:6828768-6828848 8.18e-02 80 chrI:5820573-5820653 1.58e-04 2_[+3(1.44e-05)]_31_[+3(1.44e-05)]_\ 31 chrX:7152177-7152257 2.49e-01 80 chrX:11370257-11370337 6.19e-02 80 chrII:2095085-2095165 3.82e-02 80 chrV:6681652-6681732 2.32e-01 80 chrIV:11568996-11569076 2.55e-02 17_[+4(4.60e-05)]_55 chrV:11698671-11698751 1.63e-02 80 chrIII:6477801-6477881 8.49e-03 55_[+4(2.02e-05)]_17 chrII:7568850-7568930 6.01e-01 80 chrII:13856847-13856927 4.08e-03 80 chrV:14363328-14363408 1.93e-03 44_[+4(7.19e-05)]_28 chrX:17480654-17480734 4.81e-04 50_[+3(1.44e-05)]_22 chrIV:3755711-3755791 5.08e-02 80 chrII:12990313-12990393 3.60e-02 80 chrIV:8000978-8001058 3.41e-02 2_[+1(5.13e-05)]_70 chrIII:9089912-9089992 1.50e-01 80 chrI:3409817-3409897 3.13e-02 80 chrX:3555781-3555861 1.74e-02 29_[+5(1.37e-05)]_43 chrX:6371870-6371950 1.02e-01 36_[+1(1.46e-05)]_36 chrV:11663633-11663713 4.31e-02 80 chrIV:5971275-5971355 4.55e-02 80 chrII:9646933-9647013 7.56e-02 36_[+2(9.09e-05)]_36 chrIV:5502797-5502877 1.04e-01 80 chrII:627155-627235 7.54e-01 80 chrX:14187995-14188075 2.99e-01 80 chrV:11953207-11953287 5.02e-02 80 chrX:4765204-4765284 3.07e-01 80 chrX:2926983-2927063 1.69e-03 2_[+2(3.22e-05)]_70 chrIII:6027790-6027870 9.79e-02 69_[+5(9.82e-05)]_3 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c28n01.farnam.hpc.yale.internal ********************************************************************************