******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/worm/fasta/RankLinear2.0_40/nhr-129.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrV:10509011-10509091 1.0000 80 chrIV:9718023-9718103 1.0000 80 chrV:2138466-2138546 1.0000 80 chrX:5213191-5213271 1.0000 80 chrV:3805650-3805730 1.0000 80 chrX:6532055-6532135 1.0000 80 chrV:4164708-4164788 1.0000 80 chrIII:13566144-13566224 1.0000 80 chrV:4862935-4863015 1.0000 80 chrIII:5581206-5581286 1.0000 80 chrV:12963349-12963429 1.0000 80 chrII:5628600-5628680 1.0000 80 chrX:3114808-3114888 1.0000 80 chrI:6250086-6250166 1.0000 80 chrV:12410556-12410636 1.0000 80 chrV:5780150-5780230 1.0000 80 chrV:12741857-12741937 1.0000 80 chrX:3022510-3022590 1.0000 80 chrII:14297209-14297289 1.0000 80 chrV:1629510-1629590 1.0000 80 chrI:7598141-7598221 1.0000 80 chrIV:13080266-13080346 1.0000 80 chrX:1044488-1044568 1.0000 80 chrX:1148614-1148694 1.0000 80 chrIII:7358794-7358874 1.0000 80 chrIII:1284738-1284818 1.0000 80 chrV:16395300-16395380 1.0000 80 chrX:16354766-16354846 1.0000 80 chrV:8025393-8025473 1.0000 80 chrIV:12113240-12113320 1.0000 80 chrV:4042026-4042106 1.0000 80 chrV:5131596-5131676 1.0000 80 chrX:3256940-3257020 1.0000 80 chrX:7233843-7233923 1.0000 80 chrIV:7633167-7633247 1.0000 80 chrIII:1243390-1243470 1.0000 80 chrIV:14219802-14219882 1.0000 80 chrIV:13748952-13749032 1.0000 80 chrII:11135870-11135950 1.0000 80 chrIII:6144747-6144827 1.0000 80 chrIV:829280-829360 1.0000 80 chrI:8798296-8798376 1.0000 80 chrI:6181167-6181247 1.0000 80 chrIV:9514323-9514403 1.0000 80 chrI:9862735-9862815 1.0000 80 chrX:12691490-12691570 1.0000 80 chrV:5087152-5087232 1.0000 80 chrII:10445845-10445925 1.0000 80 chrII:10012685-10012765 1.0000 80 chrV:10709563-10709643 1.0000 80 chrX:12878115-12878195 1.0000 80 chrV:10938848-10938928 1.0000 80 chrIII:5200574-5200654 1.0000 80 chrIV:2602707-2602787 1.0000 80 chrIII:8392470-8392550 1.0000 80 chrX:2317662-2317742 1.0000 80 chrII:7421135-7421215 1.0000 80 chrII:12050709-12050789 1.0000 80 chrV:10255264-10255344 1.0000 80 chrV:3803480-3803560 1.0000 80 chrX:4142790-4142870 1.0000 80 chrI:12426805-12426885 1.0000 80 chrIII:8734762-8734842 1.0000 80 chrV:4908719-4908799 1.0000 80 chrIV:13880964-13881044 1.0000 80 chrI:7087333-7087413 1.0000 80 chrV:7894078-7894158 1.0000 80 chrIV:12335454-12335534 1.0000 80 chrIV:14507125-14507205 1.0000 80 chrX:12875750-12875830 1.0000 80 chrIII:3615596-3615676 1.0000 80 chrIV:5588240-5588320 1.0000 80 chrII:13954220-13954300 1.0000 80 chrX:4009086-4009166 1.0000 80 chrIV:12396995-12397075 1.0000 80 chrIV:13384049-13384129 1.0000 80 chrX:17385216-17385296 1.0000 80 chrV:12733566-12733646 1.0000 80 chrIV:12114645-12114725 1.0000 80 chrX:2802895-2802975 1.0000 80 chrX:7952429-7952509 1.0000 80 chrIV:10003589-10003669 1.0000 80 chrV:16160228-16160308 1.0000 80 chrIV:3652300-3652380 1.0000 80 chrV:8654592-8654672 1.0000 80 chrIV:12464981-12465061 1.0000 80 chrIV:8377081-8377161 1.0000 80 chrII:11724008-11724088 1.0000 80 chrV:12287814-12287894 1.0000 80 chrV:534297-534377 1.0000 80 chrI:7085940-7086020 1.0000 80 chrIII:3952199-3952279 1.0000 80 chrV:12409181-12409261 1.0000 80 chrIV:14606644-14606724 1.0000 80 chrIV:14612227-14612307 1.0000 80 chrX:4139980-4140060 1.0000 80 chrX:11661734-11661814 1.0000 80 chrIII:9805056-9805136 1.0000 80 chrII:10289086-10289166 1.0000 80 chrV:5081089-5081169 1.0000 80 chrX:16287241-16287321 1.0000 80 chrIII:7719488-7719568 1.0000 80 chrIII:1308364-1308444 1.0000 80 chrIV:14675935-14676015 1.0000 80 chrV:2135483-2135563 1.0000 80 chrX:13267398-13267478 1.0000 80 chrIII:5900814-5900894 1.0000 80 chrIII:8400622-8400702 1.0000 80 chrV:5687740-5687820 1.0000 80 chrIV:7391120-7391200 1.0000 80 chrX:14510514-14510594 1.0000 80 chrII:2420871-2420951 1.0000 80 chrX:2316355-2316435 1.0000 80 chrV:14773190-14773270 1.0000 80 chrV:211905-211985 1.0000 80 chrIV:11748964-11749044 1.0000 80 chrV:14948735-14948815 1.0000 80 chrIV:13206025-13206105 1.0000 80 chrIV:7689522-7689602 1.0000 80 chrIV:12128036-12128116 1.0000 80 chrIII:11660829-11660909 1.0000 80 chrI:6238461-6238541 1.0000 80 chrX:4507248-4507328 1.0000 80 chrX:14946568-14946648 1.0000 80 chrIV:5586396-5586476 1.0000 80 chrV:5587169-5587249 1.0000 80 chrIII:9328859-9328939 1.0000 80 chrII:8961668-8961748 1.0000 80 chrIV:7165910-7165990 1.0000 80 chrX:6905750-6905830 1.0000 80 chrIV:13877855-13877935 1.0000 80 chrIV:7507491-7507571 1.0000 80 chrIV:12089050-12089130 1.0000 80 chrI:6713046-6713126 1.0000 80 chrV:13402639-13402719 1.0000 80 chrII:6561523-6561603 1.0000 80 chrI:8013451-8013531 1.0000 80 chrV:14003901-14003981 1.0000 80 chrIV:9217090-9217170 1.0000 80 chrI:6262913-6262993 1.0000 80 chrIII:13101206-13101286 1.0000 80 chrIV:14128366-14128446 1.0000 80 chrX:5213829-5213909 1.0000 80 chrI:4030682-4030762 1.0000 80 chrIV:5603509-5603589 1.0000 80 chrX:11415390-11415470 1.0000 80 chrIII:7880438-7880518 1.0000 80 chrX:6745144-6745224 1.0000 80 chrX:8018578-8018658 1.0000 80 chrIII:6359583-6359663 1.0000 80 chrIV:13075788-13075868 1.0000 80 chrX:6250371-6250451 1.0000 80 chrIV:12198980-12199060 1.0000 80 chrX:12914382-12914462 1.0000 80 chrII:8959372-8959452 1.0000 80 chrIII:9457573-9457653 1.0000 80 chrX:9544484-9544564 1.0000 80 chrI:7867164-7867244 1.0000 80 chrII:12809876-12809956 1.0000 80 chrII:6028707-6028787 1.0000 80 chrIII:13563203-13563283 1.0000 80 chrV:10937488-10937568 1.0000 80 chrV:7822817-7822897 1.0000 80 chrX:5210667-5210747 1.0000 80 chrI:6569286-6569366 1.0000 80 chrV:10399427-10399507 1.0000 80 chrV:4642838-4642918 1.0000 80 chrV:4024999-4025079 1.0000 80 chrV:16309706-16309786 1.0000 80 chrV:11791568-11791648 1.0000 80 chrIII:9153122-9153202 1.0000 80 chrII:10204799-10204879 1.0000 80 chrIV:5598679-5598759 1.0000 80 chrV:4038734-4038814 1.0000 80 chrI:7550348-7550428 1.0000 80 chrIV:6500957-6501037 1.0000 80 chrIV:5590317-5590397 1.0000 80 chrIV:12034145-12034225 1.0000 80 chrIV:12527406-12527486 1.0000 80 chrV:123611-123691 1.0000 80 chrII:8485805-8485885 1.0000 80 chrV:5851765-5851845 1.0000 80 chrII:13632325-13632405 1.0000 80 chrIII:10290685-10290765 1.0000 80 chrX:4564821-4564901 1.0000 80 chrIII:9620381-9620461 1.0000 80 chrIV:12451382-12451462 1.0000 80 chrV:610391-610471 1.0000 80 chrIV:13013387-13013467 1.0000 80 chrIV:14103205-14103285 1.0000 80 chrV:4969686-4969766 1.0000 80 chrIV:15021112-15021192 1.0000 80 chrI:2628821-2628901 1.0000 80 chrX:7866672-7866752 1.0000 80 chrII:5874311-5874391 1.0000 80 chrX:10909880-10909960 1.0000 80 chrX:7230560-7230640 1.0000 80 chrI:3405783-3405863 1.0000 80 chrI:13576509-13576589 1.0000 80 chrV:7413202-7413282 1.0000 80 chrII:14917051-14917131 1.0000 80 chrX:4016628-4016708 1.0000 80 chrX:12167798-12167878 1.0000 80 chrI:1695213-1695293 1.0000 80 chrII:4494644-4494724 1.0000 80 chrX:17684889-17684969 1.0000 80 chrV:13704155-13704235 1.0000 80 chrX:6059458-6059538 1.0000 80 chrII:8128342-8128422 1.0000 80 chrIV:14272634-14272714 1.0000 80 chrI:8788938-8789018 1.0000 80 chrX:16793608-16793688 1.0000 80 chrX:3537099-3537179 1.0000 80 chrX:573434-573514 1.0000 80 chrIII:1279377-1279457 1.0000 80 chrX:3021612-3021692 1.0000 80 chrII:7364227-7364307 1.0000 80 chrX:4619734-4619814 1.0000 80 chrII:8450861-8450941 1.0000 80 chrX:13355196-13355276 1.0000 80 chrV:6232045-6232125 1.0000 80 chrX:5117267-5117347 1.0000 80 chrIV:2193735-2193815 1.0000 80 chrIV:10512875-10512955 1.0000 80 chrIV:6748608-6748688 1.0000 80 chrII:15212609-15212689 1.0000 80 chrIV:8232555-8232635 1.0000 80 chrIV:16496676-16496756 1.0000 80 chrIV:12156790-12156870 1.0000 80 chrIV:11068477-11068557 1.0000 80 chrV:4742329-4742409 1.0000 80 chrI:7381075-7381155 1.0000 80 chrV:4483093-4483173 1.0000 80 chrIII:9905546-9905626 1.0000 80 chrII:8744655-8744735 1.0000 80 chrV:15664165-15664245 1.0000 80 chrX:15076320-15076400 1.0000 80 chrIII:8739917-8739997 1.0000 80 chrII:5931240-5931320 1.0000 80 chrI:14898786-14898866 1.0000 80 chrII:5698379-5698459 1.0000 80 chrIV:13231515-13231595 1.0000 80 chrI:2577419-2577499 1.0000 80 chrI:6236008-6236088 1.0000 80 chrX:7659865-7659945 1.0000 80 chrX:11358306-11358386 1.0000 80 chrV:20763383-20763463 1.0000 80 chrV:10146963-10147043 1.0000 80 chrX:7236903-7236983 1.0000 80 chrI:6260344-6260424 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/worm/inference_raw/MEME/RankLinear2.0_40_nhr-129/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/worm/fasta/RankLinear2.0_40/nhr-129.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.283 C 0.205 G 0.204 T 0.308 Background letter frequencies (from file dataset with add-one prior applied): A 0.283 C 0.205 G 0.204 T 0.308 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF TTGCATCA MEME-1 width = 8 sites = 63 llr = 573 E-value = 6.9e-053 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTGCATCA MEME-1 Description -------------------------------------------------------------------------------- Simplified A ::1:8::a pos.-specific C :::a::a: probability G ::7:2::: matrix T aa2::a:: bits 2.3 * 2.1 * * 1.8 * * 1.6 ** * ** Relative 1.4 ** * *** Entropy 1.1 ******** (13.1 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TTGCATCA consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGCATCA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:15076320-15076400 23 2.01e-05 ATTGCAATAA TTGCATCA CTTTTCTGTT chrX:13355196-13355276 12 2.01e-05 TAGAAGCACG TTGCATCA GCCAACGGAA chrV:610391-610471 6 2.01e-05 CTGAT TTGCATCA TTGAAACAAT chrV:11791568-11791648 27 2.01e-05 ATTGCTTCTA TTGCATCA TTCTGATTTA chrI:6569286-6569366 3 2.01e-05 TT TTGCATCA TTTTTCGTGC chrX:6745144-6745224 3 2.01e-05 GA TTGCATCA TTATTTCAAA chrIV:7507491-7507571 51 2.01e-05 GTACATACAA TTGCATCA CCTGCGTCAC chrIV:7391120-7391200 48 2.01e-05 CTCCTCTTTA TTGCATCA TTCCGGGCCC chrV:2135483-2135563 30 2.01e-05 GAACGCGGCA TTGCATCA GACAATTTGT chrX:4139980-4140060 44 2.01e-05 GGCGAGAGAA TTGCATCA GAATTATCTT chrV:12409181-12409261 48 2.01e-05 ATGCAACGTA TTGCATCA AGATATTTCA chrII:11724008-11724088 53 2.01e-05 ATCATCCCTT TTGCATCA TGTTCCCCCT chrIV:3652300-3652380 37 2.01e-05 AGAGAGCAAA TTGCATCA GATACAGTAA chrX:7952429-7952509 45 2.01e-05 CATCATATGA TTGCATCA CATTCGCCTG chrIV:5588240-5588320 22 2.01e-05 CTGTTTACTT TTGCATCA CCCCCGCTTG chrIII:3615596-3615676 51 2.01e-05 GATGTTGTTG TTGCATCA TAATATACTG chrIII:8734762-8734842 68 2.01e-05 TTCGCAATTA TTGCATCA TGCAG chrX:4142790-4142870 32 2.01e-05 TCTGCTTGAA TTGCATCA TGCCACGTCA chrV:3803480-3803560 22 2.01e-05 GGACTCGAAA TTGCATCA GGTGGAAGTA chrIII:8392470-8392550 39 2.01e-05 TCACCGCCAA TTGCATCA TTTTGAGCAG chrIII:5200574-5200654 15 2.01e-05 GTCAGAGAGT TTGCATCA TTTTTTGAGG chrII:10445845-10445925 14 2.01e-05 CCACACATTT TTGCATCA TGCTAGCGGG chrX:12691490-12691570 63 2.01e-05 ACTCCACATT TTGCATCA TCTTATCAAC chrX:7233843-7233923 28 2.01e-05 AGTTTCAGAT TTGCATCA TCATGCCATT chrX:16354766-16354846 22 2.01e-05 CCACAGATTA TTGCATCA CACGCACACT chrIII:7358794-7358874 58 2.01e-05 TTGTCATCTG TTGCATCA TCATCCAACA chrX:1044488-1044568 49 2.01e-05 TTATGAAATA TTGCATCA CCTTGGCTTT chrIV:13080266-13080346 13 2.01e-05 TTGTTTTTGT TTGCATCA TAAGATCTGA chrII:14297209-14297289 30 2.01e-05 CCTCCCCCAC TTGCATCA TCTAACCCCG chrV:12741857-12741937 29 2.01e-05 TAGTCATTAG TTGCATCA TATGTCTGCT chrII:5628600-5628680 44 2.01e-05 TGATAATCCA TTGCATCA TCTATAGCAA chrX:5213191-5213271 41 2.01e-05 TTTTGTGAAA TTGCATCA TTCTCAATCC chrIV:9718023-9718103 37 2.01e-05 TGTGTTTTGA TTGCATCA TGTGATGTGT chrV:10509011-10509091 17 2.01e-05 TTTTTCCTTC TTGCATCA TGGGGTTGAA chrIV:2193735-2193815 40 3.45e-05 GAGAAGAAAA TTGCGTCA TTTCTCTTTT chrI:13576509-13576589 38 3.45e-05 AAATCAATAA TTGCGTCA GAGTGTGTGC chrIII:5900814-5900894 12 3.45e-05 AATGATGGAG TTGCGTCA TACAGTACCT chrX:13267398-13267478 24 3.45e-05 ATGATAACAA TTGCGTCA TTGTTGACAG chrV:12963349-12963429 24 3.45e-05 GACCACAAAA TTGCGTCA TATGTTTTTA chrV:3805650-3805730 37 3.45e-05 ACTAAAAATA TTGCGTCA TATGTTGTAA chrX:11358306-11358386 30 6.48e-05 GTGAGTGCTC TTTCATCA TATTGCGAGA chrV:15664165-15664245 60 6.48e-05 TTCCTCTCCC TTTCATCA TTTACTTTTC chrV:4483093-4483173 35 6.48e-05 CCTACTACTG TTTCATCA CATGAACATC chrIII:13101206-13101286 22 6.48e-05 AGTTTCGTGA TTTCATCA CTTCATTTGC chrIV:2602707-2602787 20 6.48e-05 AACTACAAGA TTTCATCA TTTTTGATAG chrI:8798296-8798376 20 6.48e-05 CTTTCATTAA TTTCATCA TTATTATCAT chrI:7598141-7598221 36 6.48e-05 GGGTCTTCTC TTTCATCA CTCAACACGC chrI:2577419-2577499 52 9.26e-05 TACGTCACTA TTACATCA GGGTTGGTGA chrI:2628821-2628901 39 9.26e-05 GCGTTTTTGA TTACATCA TCTCCACCCA chrV:5687740-5687820 24 9.26e-05 TGTTATATGA TTACATCA GATTGATCGT chrV:7894078-7894158 51 9.26e-05 CGAGATGCCA TTACATCA TGCCAATCGT chrI:7087333-7087413 6 9.26e-05 TGTGA TTACATCA TGCATTGGAT chrX:7866672-7866752 14 1.14e-04 TCCAGACATT TTTCGTCA TGGCAGCTAC chrII:8485805-8485885 70 1.14e-04 AAACCTTTTT TTTCGTCA TAT chrIV:7633167-7633247 58 1.14e-04 CTTGAGAATG TTTCGTCA GATGATGCAA chrV:5780150-5780230 61 1.14e-04 CCTATGCCGA TTTCGTCA TTTCGTGAAA chrIV:14612227-14612307 2 1.42e-04 A TTGCATAA CAGTCGATCC chrIII:6144747-6144827 59 1.42e-04 CTGTTCATTA TTGCATAA GCCAGCTGGT chrX:16287241-16287321 48 1.62e-04 CACGAAAAAA TTACGTCA GATGATGGTA chrX:4009086-4009166 31 1.76e-04 ACAATCATTG TTGCACCA TATGGCTCGA chrI:8013451-8013531 46 1.90e-04 ATTTTCACTT TTGCATCG TTGTCtcttt chrIII:3952199-3952279 50 2.08e-04 CAACACATGA TTGCAACA CAAAACGTTT chrV:16309706-16309786 43 2.28e-04 AGTCACACAA TTGCGTAA TACTACATAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGCATCA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:15076320-15076400 2e-05 22_[+1]_50 chrX:13355196-13355276 2e-05 11_[+1]_61 chrV:610391-610471 2e-05 5_[+1]_67 chrV:11791568-11791648 2e-05 26_[+1]_46 chrI:6569286-6569366 2e-05 2_[+1]_70 chrX:6745144-6745224 2e-05 2_[+1]_70 chrIV:7507491-7507571 2e-05 50_[+1]_22 chrIV:7391120-7391200 2e-05 47_[+1]_25 chrV:2135483-2135563 2e-05 29_[+1]_43 chrX:4139980-4140060 2e-05 43_[+1]_29 chrV:12409181-12409261 2e-05 47_[+1]_25 chrII:11724008-11724088 2e-05 52_[+1]_20 chrIV:3652300-3652380 2e-05 36_[+1]_36 chrX:7952429-7952509 2e-05 44_[+1]_28 chrIV:5588240-5588320 2e-05 21_[+1]_51 chrIII:3615596-3615676 2e-05 50_[+1]_22 chrIII:8734762-8734842 2e-05 67_[+1]_5 chrX:4142790-4142870 2e-05 31_[+1]_41 chrV:3803480-3803560 2e-05 21_[+1]_51 chrIII:8392470-8392550 2e-05 38_[+1]_34 chrIII:5200574-5200654 2e-05 14_[+1]_58 chrII:10445845-10445925 2e-05 13_[+1]_59 chrX:12691490-12691570 2e-05 62_[+1]_10 chrX:7233843-7233923 2e-05 27_[+1]_45 chrX:16354766-16354846 2e-05 21_[+1]_51 chrIII:7358794-7358874 2e-05 57_[+1]_15 chrX:1044488-1044568 2e-05 48_[+1]_24 chrIV:13080266-13080346 2e-05 12_[+1]_60 chrII:14297209-14297289 2e-05 29_[+1]_43 chrV:12741857-12741937 2e-05 28_[+1]_44 chrII:5628600-5628680 2e-05 43_[+1]_29 chrX:5213191-5213271 2e-05 40_[+1]_32 chrIV:9718023-9718103 2e-05 36_[+1]_36 chrV:10509011-10509091 2e-05 16_[+1]_56 chrIV:2193735-2193815 3.5e-05 39_[+1]_33 chrI:13576509-13576589 3.5e-05 37_[+1]_35 chrIII:5900814-5900894 3.5e-05 11_[+1]_61 chrX:13267398-13267478 3.5e-05 23_[+1]_49 chrV:12963349-12963429 3.5e-05 23_[+1]_49 chrV:3805650-3805730 3.5e-05 36_[+1]_36 chrX:11358306-11358386 6.5e-05 29_[+1]_43 chrV:15664165-15664245 6.5e-05 59_[+1]_13 chrV:4483093-4483173 6.5e-05 34_[+1]_38 chrIII:13101206-13101286 6.5e-05 21_[+1]_51 chrIV:2602707-2602787 6.5e-05 19_[+1]_53 chrI:8798296-8798376 6.5e-05 19_[+1]_53 chrI:7598141-7598221 6.5e-05 35_[+1]_37 chrI:2577419-2577499 9.3e-05 51_[+1]_21 chrI:2628821-2628901 9.3e-05 38_[+1]_34 chrV:5687740-5687820 9.3e-05 23_[+1]_49 chrV:7894078-7894158 9.3e-05 50_[+1]_22 chrI:7087333-7087413 9.3e-05 5_[+1]_67 chrX:7866672-7866752 0.00011 13_[+1]_59 chrII:8485805-8485885 0.00011 69_[+1]_3 chrIV:7633167-7633247 0.00011 57_[+1]_15 chrV:5780150-5780230 0.00011 60_[+1]_12 chrIV:14612227-14612307 0.00014 1_[+1]_71 chrIII:6144747-6144827 0.00014 58_[+1]_14 chrX:16287241-16287321 0.00016 47_[+1]_25 chrX:4009086-4009166 0.00018 30_[+1]_42 chrI:8013451-8013531 0.00019 45_[+1]_27 chrIII:3952199-3952279 0.00021 49_[+1]_23 chrV:16309706-16309786 0.00023 42_[+1]_30 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGCATCA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTGCATCA width=8 seqs=63 chrX:15076320-15076400 ( 23) TTGCATCA 1 chrX:13355196-13355276 ( 12) TTGCATCA 1 chrV:610391-610471 ( 6) TTGCATCA 1 chrV:11791568-11791648 ( 27) TTGCATCA 1 chrI:6569286-6569366 ( 3) TTGCATCA 1 chrX:6745144-6745224 ( 3) TTGCATCA 1 chrIV:7507491-7507571 ( 51) TTGCATCA 1 chrIV:7391120-7391200 ( 48) TTGCATCA 1 chrV:2135483-2135563 ( 30) TTGCATCA 1 chrX:4139980-4140060 ( 44) TTGCATCA 1 chrV:12409181-12409261 ( 48) TTGCATCA 1 chrII:11724008-11724088 ( 53) TTGCATCA 1 chrIV:3652300-3652380 ( 37) TTGCATCA 1 chrX:7952429-7952509 ( 45) TTGCATCA 1 chrIV:5588240-5588320 ( 22) TTGCATCA 1 chrIII:3615596-3615676 ( 51) TTGCATCA 1 chrIII:8734762-8734842 ( 68) TTGCATCA 1 chrX:4142790-4142870 ( 32) TTGCATCA 1 chrV:3803480-3803560 ( 22) TTGCATCA 1 chrIII:8392470-8392550 ( 39) TTGCATCA 1 chrIII:5200574-5200654 ( 15) TTGCATCA 1 chrII:10445845-10445925 ( 14) TTGCATCA 1 chrX:12691490-12691570 ( 63) TTGCATCA 1 chrX:7233843-7233923 ( 28) TTGCATCA 1 chrX:16354766-16354846 ( 22) TTGCATCA 1 chrIII:7358794-7358874 ( 58) TTGCATCA 1 chrX:1044488-1044568 ( 49) TTGCATCA 1 chrIV:13080266-13080346 ( 13) TTGCATCA 1 chrII:14297209-14297289 ( 30) TTGCATCA 1 chrV:12741857-12741937 ( 29) TTGCATCA 1 chrII:5628600-5628680 ( 44) TTGCATCA 1 chrX:5213191-5213271 ( 41) TTGCATCA 1 chrIV:9718023-9718103 ( 37) TTGCATCA 1 chrV:10509011-10509091 ( 17) TTGCATCA 1 chrIV:2193735-2193815 ( 40) TTGCGTCA 1 chrI:13576509-13576589 ( 38) TTGCGTCA 1 chrIII:5900814-5900894 ( 12) TTGCGTCA 1 chrX:13267398-13267478 ( 24) TTGCGTCA 1 chrV:12963349-12963429 ( 24) TTGCGTCA 1 chrV:3805650-3805730 ( 37) TTGCGTCA 1 chrX:11358306-11358386 ( 30) TTTCATCA 1 chrV:15664165-15664245 ( 60) TTTCATCA 1 chrV:4483093-4483173 ( 35) TTTCATCA 1 chrIII:13101206-13101286 ( 22) TTTCATCA 1 chrIV:2602707-2602787 ( 20) TTTCATCA 1 chrI:8798296-8798376 ( 20) TTTCATCA 1 chrI:7598141-7598221 ( 36) TTTCATCA 1 chrI:2577419-2577499 ( 52) TTACATCA 1 chrI:2628821-2628901 ( 39) TTACATCA 1 chrV:5687740-5687820 ( 24) TTACATCA 1 chrV:7894078-7894158 ( 51) TTACATCA 1 chrI:7087333-7087413 ( 6) TTACATCA 1 chrX:7866672-7866752 ( 14) TTTCGTCA 1 chrII:8485805-8485885 ( 70) TTTCGTCA 1 chrIV:7633167-7633247 ( 58) TTTCGTCA 1 chrV:5780150-5780230 ( 61) TTTCGTCA 1 chrIV:14612227-14612307 ( 2) TTGCATAA 1 chrIII:6144747-6144827 ( 59) TTGCATAA 1 chrX:16287241-16287321 ( 48) TTACGTCA 1 chrX:4009086-4009166 ( 31) TTGCACCA 1 chrI:8013451-8013531 ( 46) TTGCATCG 1 chrIII:3952199-3952279 ( 50) TTGCAACA 1 chrV:16309706-16309786 ( 43) TTGCGTAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGCATCA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.89709 E= 6.9e-053 -1262 -1262 -1262 170 -1262 -1262 -1262 170 -157 -1262 184 -82 -1262 228 -1262 -1262 152 -1262 -10 -1262 -415 -369 -1262 165 -257 221 -1262 -1262 180 -1262 -368 -1262 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGCATCA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 63 E= 6.9e-053 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.095238 0.000000 0.730159 0.174603 0.000000 1.000000 0.000000 0.000000 0.809524 0.000000 0.190476 0.000000 0.015873 0.015873 0.000000 0.968254 0.047619 0.952381 0.000000 0.000000 0.984127 0.000000 0.015873 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGCATCA MEME-1 regular expression -------------------------------------------------------------------------------- TTGCATCA -------------------------------------------------------------------------------- Time 9.45 secs. ******************************************************************************** ******************************************************************************** MOTIF TKWYGMAA MEME-2 width = 8 sites = 90 llr = 661 E-value = 7.3e-029 ******************************************************************************** -------------------------------------------------------------------------------- Motif TKWYGMAA MEME-2 Description -------------------------------------------------------------------------------- Simplified A ::5::4aa pos.-specific C :::5:5:: probability G :51:a::: matrix T a545:2:: bits 2.3 * 2.1 * 1.8 * ** 1.6 * * ** Relative 1.4 * * ** Entropy 1.1 * * ** (10.6 bits) 0.9 ** ** ** 0.7 ** ** ** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TTATGCAA consensus GTC A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKWYGMAA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIV:9217090-9217170 1 1.22e-05 . TGACGCAA TTCTTTAGAT chrI:7598141-7598221 15 1.22e-05 GTAAACTGAC TGACGCAA CACGGGTCTT chrV:4862935-4863015 48 1.22e-05 ACGATAGAAA TGACGCAA TTTTAGAGAA chrX:7230560-7230640 66 4.90e-05 TTGCCAAGTA TGATGCAA AATCTTT chrIII:10290685-10290765 33 4.90e-05 ATTAAAAAAA TGATGCAA TTGTGATTTT chrV:123611-123691 33 4.90e-05 TTTCGAAATT TTACGCAA TCTCACGAAA chrV:10399427-10399507 51 4.90e-05 ATAACTAGAG TGATGCAA CTTCAAATTT chrX:5213829-5213909 73 4.90e-05 TCATACATAG TGATGCAA chrV:211905-211985 27 4.90e-05 TGTGAAATAG TGATGCAA AAAGGTTCAA chrV:534297-534377 13 4.90e-05 ACAGTTTTTA TGATGCAA TTTTTCCATT chrII:13954220-13954300 29 4.90e-05 AAACATAATA TGATGCAA TTTTAGTTGG chrII:12050709-12050789 52 4.90e-05 CATATGGTCC TGATGCAA TATAGGAAAC chrII:10012685-10012765 10 4.90e-05 TATGATAGA TGATGCAA GAAAGCTGTT chrI:6181167-6181247 41 4.90e-05 GCACTCCCAG TGATGCAA TTTTGAAAAC chrIV:829280-829360 73 4.90e-05 TTCTGGGAAA TGATGCAA chrIV:7633167-7633247 68 4.90e-05 TTTCGTCAGA TGATGCAA ATATG chrX:3022510-3022590 22 4.90e-05 ATGCTCTCCA TGATGCAA TTTATGTCTT chrV:12410556-12410636 12 4.90e-05 GATTTTATTA TGATGCAA CTTATTTTTC chrX:3114808-3114888 50 4.90e-05 GAAAAAAAAA TGATGCAA TAGGCAAGAT chrIII:13566144-13566224 51 4.90e-05 GGAGGAGGCA TGATGCAA TTGTGCGAAT chrX:6532055-6532135 49 4.90e-05 TGCCCTGAAA TGATGCAA TTTTTTCACG chrV:2138466-2138546 12 4.90e-05 GTTCTGCGGC TGATGCAA TGTCTCTGCA chrX:5117267-5117347 32 7.91e-05 AGATGGAGTA TGACGAAA TGAAAACAGA chrX:13355196-13355276 71 7.91e-05 TTGCAGTATC TGACGAAA TC chrI:2628821-2628901 18 7.91e-05 CAAATAACAC TGACGAAA AGAGCGTTTT chrIV:9514323-9514403 64 7.91e-05 TGATATCATT TGACGAAA ATAAGTACA chrX:3256940-3257020 33 1.07e-04 CGGAGTCATA TTATGCAA GTGATGATGG chrX:573434-573514 49 1.47e-04 AGATTTGAGA TTTCGCAA TGTGCTGATG chrIV:12034145-12034225 42 1.47e-04 CTTTTTTCGA TTTCGCAA CTCTCGCAAC chrII:12809876-12809956 33 1.47e-04 TTTTGCAAAA TTTCGCAA TACTTCACAA chrI:6262913-6262993 57 1.47e-04 TATACATCTT TTTCGCAA AAATTAAATC chrV:5081089-5081169 53 1.47e-04 TTAGGAAATA TTTCGCAA CAGTCAAAGG chrII:10289086-10289166 39 1.47e-04 TCTCTAGAGG TGTTGCAA TTTTTTGTGT chrIII:9805056-9805136 28 1.47e-04 TTGTGGAATG TTTCGCAA TGCAATCAAT chrIV:8377081-8377161 52 1.47e-04 TGTTCTCTTT TTTCGCAA CATTTCGAAA chrV:16160228-16160308 27 1.47e-04 TCAGAGACTA TTTCGCAA TATTTCAAAA chrIII:8734762-8734842 57 1.47e-04 GTTGTAATTT TTTCGCAA TTATTGCATC chrV:10938848-10938928 37 1.47e-04 TTGCGGAATA TTTCGCAA TCGGTCAAGA chrV:4042026-4042106 24 1.47e-04 TGGCGCAATA TTTCGCAA TACATTTGGG chrV:16395300-16395380 66 1.47e-04 TTTCGCAATA TTTCGCAA TTTTATT chrIII:1284738-1284818 48 1.47e-04 ATTGCATATT TTTCGCAA AAGGTTGCGT chrX:4619734-4619814 61 1.98e-04 CGCGCGATGA TGATGAAA TAGTGTAAGG chrX:3537099-3537179 5 1.98e-04 ATCA TGATGAAA TTCAGTTTGG chrV:4024999-4025079 38 1.98e-04 AAAAAAAGTA TTACGAAA TATTTCGCCA chrV:4642838-4642918 54 1.98e-04 GATAATCAGA TGATGAAA TTGATTTTTT chrV:5587169-5587249 4 1.98e-04 TTG TTACGAAA TTTGTCACAA chrIV:7689522-7689602 31 1.98e-04 GATCATGATA TGATGAAA CTGATAACGT chrX:14510514-14510594 39 1.98e-04 GGGCGCAATA TTACGAAA TGCAAAAACA chrIV:10003589-10003669 29 1.98e-04 GCCTGAAATC TTACGAAA TTTTACCAAA chrV:1629510-1629590 69 1.98e-04 GACGACACAA TGATGAAA AATA chrIV:5603509-5603589 7 2.16e-04 AGTATT TGTCGAAA TACTCTCTCT chrIII:1243390-1243470 52 2.46e-04 TCTTGCCTCG TTTTGCAA TATTGCCAAA chrII:8128342-8128422 1 2.84e-04 . TTATGAAA TAATATATTT chrX:1044488-1044568 39 2.84e-04 AACCGAGAGC TTATGAAA TATTGCATCA chrIV:7165910-7165990 22 3.40e-04 TTTGGCAACA TTTCGAAA TATAATGTAA chrIV:14612227-14612307 57 3.40e-04 TAGCCTCGAT TTTCGAAA AACCCGTGGC chrII:11724008-11724088 26 3.40e-04 ATTGTGCATA TTTCGAAA GCTCACCACA chrIV:13384049-13384129 52 3.40e-04 ACGGCAAGAG TGTTGAAA GTAGTGTGCC chrV:10255264-10255344 64 3.40e-04 TTTGGAAATG TTTCGAAA TGTTCAAGT chrV:10709563-10709643 16 3.40e-04 AATAACATGA TTTCGAAA TGTGTCATCA chrV:4164708-4164788 65 3.40e-04 TTAAGCAATA TTTCGAAA TGTTTCAC chrIII:7880438-7880518 57 3.67e-04 ATTGTAAACT TGGCGCAA CGAGTGAGAA chrV:6232045-6232125 52 4.08e-04 TTTATTGGAA TTTTGAAA TCAGACATCG chrX:4016628-4016708 68 4.08e-04 AGTTGAGAAG TTTTGAAA ACGTG chrIV:14103205-14103285 49 4.08e-04 GAGAGAAAGG TTTTGAAA TATTTCAATG chrIV:2602707-2602787 42 4.08e-04 TGATAGCAAA TTTTGAAA AGCGGAGAGG chrX:6250371-6250451 34 4.90e-04 tCCCACGGGA TGATGTAA TCCTTCGCGG chrX:6905750-6905830 25 4.90e-04 CTTATCAGGA TGATGTAA TGCAAACTGA chrX:14946568-14946648 10 4.90e-04 GCCGACATA TGATGTAA ATGGGGTACT chrX:11661734-11661814 59 4.90e-04 GTTGTGTGAA TGATGTAA TATGATAAGA chrV:8654592-8654672 7 4.90e-04 TAGCAA TGATGTAA TACTCCTTCA chrX:12878115-12878195 37 4.90e-04 TTTTCAAAGA TGATGTAA TCACCGTCAC chrV:8025393-8025473 66 4.90e-04 ATTTGCACGC TGATGTAA GATTGTA chrIII:5581206-5581286 68 4.90e-04 ATGAGTAAAA TTGCGCAA TGTGA chrV:10509011-10509091 38 4.90e-04 GGTTGAAGAG TGATGTAA TTTATCACCC chrV:10146963-10147043 25 5.84e-04 TTGCCATCTG TTATGTAA CAACACATGC chrV:5131596-5131676 48 5.84e-04 TAACAGAGTG TTGTGCAA TACTACACAA chrIII:1279377-1279457 33 6.44e-04 GCAATGCTCA TTTCGTAA CATTTCATAA chrIV:12451382-12451462 35 6.44e-04 GAGACCGGAG TTTCGTAA TGATGTTTAG chrI:6713046-6713126 52 6.44e-04 CGCGGTAATA TTTCGTAA TTCAGAGGAG chrIII:1308364-1308444 4 6.44e-04 ATA TTTCGTAA CATTGCATGT chrX:4142790-4142870 66 6.44e-04 GTTTTTCGTC TGTTGTAA TTGAGTT chrI:9862735-9862815 34 6.44e-04 GGGTGAAATA TTTCGTAA TATTTTATCA chrV:3805650-3805730 47 6.44e-04 TTGCGTCATA TGTTGTAA CTGGAAATCC chrV:4038734-4038814 30 6.81e-04 GCCAACAAAA TTGCGAAA TATTTCAAAA chrI:12426805-12426885 27 6.81e-04 TTGAGCAAAA TTGCGAAA TAATTCATTT chrX:7236903-7236983 8 7.53e-04 AAAAATG TTGTGAAA AGAAAGAAAG chrV:4969686-4969766 15 7.53e-04 CTTTGAAAAG TTGTGAAA GTGTACCTAA chrIV:12114645-12114725 61 7.53e-04 TTGCCAATCT TTGTGAAA AGAGCATGGG chrX:5213191-5213271 33 7.53e-04 ATCTTCTATT TTGTGAAA TTGCATCATT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKWYGMAA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:9217090-9217170 1.2e-05 [+2]_72 chrI:7598141-7598221 1.2e-05 14_[+2]_58 chrV:4862935-4863015 1.2e-05 47_[+2]_25 chrX:7230560-7230640 4.9e-05 65_[+2]_7 chrIII:10290685-10290765 4.9e-05 32_[+2]_40 chrV:123611-123691 4.9e-05 32_[+2]_40 chrV:10399427-10399507 4.9e-05 50_[+2]_22 chrX:5213829-5213909 4.9e-05 72_[+2] chrV:211905-211985 4.9e-05 26_[+2]_46 chrV:534297-534377 4.9e-05 12_[+2]_60 chrII:13954220-13954300 4.9e-05 28_[+2]_44 chrII:12050709-12050789 4.9e-05 51_[+2]_21 chrII:10012685-10012765 4.9e-05 9_[+2]_63 chrI:6181167-6181247 4.9e-05 40_[+2]_32 chrIV:829280-829360 4.9e-05 72_[+2] chrIV:7633167-7633247 4.9e-05 67_[+2]_5 chrX:3022510-3022590 4.9e-05 21_[+2]_51 chrV:12410556-12410636 4.9e-05 11_[+2]_61 chrX:3114808-3114888 4.9e-05 49_[+2]_23 chrIII:13566144-13566224 4.9e-05 50_[+2]_22 chrX:6532055-6532135 4.9e-05 48_[+2]_24 chrV:2138466-2138546 4.9e-05 11_[+2]_61 chrX:5117267-5117347 7.9e-05 31_[+2]_41 chrX:13355196-13355276 7.9e-05 70_[+2]_2 chrI:2628821-2628901 7.9e-05 17_[+2]_55 chrIV:9514323-9514403 7.9e-05 63_[+2]_9 chrX:3256940-3257020 0.00011 32_[+2]_40 chrX:573434-573514 0.00015 48_[+2]_24 chrIV:12034145-12034225 0.00015 41_[+2]_31 chrII:12809876-12809956 0.00015 32_[+2]_40 chrI:6262913-6262993 0.00015 56_[+2]_16 chrV:5081089-5081169 0.00015 52_[+2]_20 chrII:10289086-10289166 0.00015 38_[+2]_34 chrIII:9805056-9805136 0.00015 27_[+2]_45 chrIV:8377081-8377161 0.00015 51_[+2]_21 chrV:16160228-16160308 0.00015 26_[+2]_46 chrIII:8734762-8734842 0.00015 56_[+2]_16 chrV:10938848-10938928 0.00015 36_[+2]_36 chrV:4042026-4042106 0.00015 23_[+2]_49 chrV:16395300-16395380 0.00015 65_[+2]_7 chrIII:1284738-1284818 0.00015 47_[+2]_25 chrX:4619734-4619814 0.0002 60_[+2]_12 chrX:3537099-3537179 0.0002 4_[+2]_68 chrV:4024999-4025079 0.0002 37_[+2]_35 chrV:4642838-4642918 0.0002 53_[+2]_19 chrV:5587169-5587249 0.0002 3_[+2]_69 chrIV:7689522-7689602 0.0002 30_[+2]_42 chrX:14510514-14510594 0.0002 38_[+2]_34 chrIV:10003589-10003669 0.0002 28_[+2]_44 chrV:1629510-1629590 0.0002 68_[+2]_4 chrIV:5603509-5603589 0.00022 6_[+2]_66 chrIII:1243390-1243470 0.00025 51_[+2]_21 chrII:8128342-8128422 0.00028 [+2]_72 chrX:1044488-1044568 0.00028 38_[+2]_34 chrIV:7165910-7165990 0.00034 21_[+2]_51 chrIV:14612227-14612307 0.00034 56_[+2]_16 chrII:11724008-11724088 0.00034 25_[+2]_47 chrIV:13384049-13384129 0.00034 51_[+2]_21 chrV:10255264-10255344 0.00034 63_[+2]_9 chrV:10709563-10709643 0.00034 15_[+2]_57 chrV:4164708-4164788 0.00034 64_[+2]_8 chrIII:7880438-7880518 0.00037 56_[+2]_16 chrV:6232045-6232125 0.00041 51_[+2]_21 chrX:4016628-4016708 0.00041 67_[+2]_5 chrIV:14103205-14103285 0.00041 48_[+2]_24 chrIV:2602707-2602787 0.00041 41_[+2]_31 chrX:6250371-6250451 0.00049 33_[+2]_39 chrX:6905750-6905830 0.00049 24_[+2]_48 chrX:14946568-14946648 0.00049 9_[+2]_63 chrX:11661734-11661814 0.00049 58_[+2]_14 chrV:8654592-8654672 0.00049 6_[+2]_66 chrX:12878115-12878195 0.00049 36_[+2]_36 chrV:8025393-8025473 0.00049 65_[+2]_7 chrIII:5581206-5581286 0.00049 67_[+2]_5 chrV:10509011-10509091 0.00049 37_[+2]_35 chrV:10146963-10147043 0.00058 24_[+2]_48 chrV:5131596-5131676 0.00058 47_[+2]_25 chrIII:1279377-1279457 0.00064 32_[+2]_40 chrIV:12451382-12451462 0.00064 34_[+2]_38 chrI:6713046-6713126 0.00064 51_[+2]_21 chrIII:1308364-1308444 0.00064 3_[+2]_69 chrX:4142790-4142870 0.00064 65_[+2]_7 chrI:9862735-9862815 0.00064 33_[+2]_39 chrV:3805650-3805730 0.00064 46_[+2]_26 chrV:4038734-4038814 0.00068 29_[+2]_43 chrI:12426805-12426885 0.00068 26_[+2]_46 chrX:7236903-7236983 0.00075 7_[+2]_65 chrV:4969686-4969766 0.00075 14_[+2]_58 chrIV:12114645-12114725 0.00075 60_[+2]_12 chrX:5213191-5213271 0.00075 32_[+2]_40 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKWYGMAA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TKWYGMAA width=8 seqs=90 chrIV:9217090-9217170 ( 1) TGACGCAA 1 chrI:7598141-7598221 ( 15) TGACGCAA 1 chrV:4862935-4863015 ( 48) TGACGCAA 1 chrX:7230560-7230640 ( 66) TGATGCAA 1 chrIII:10290685-10290765 ( 33) TGATGCAA 1 chrV:123611-123691 ( 33) TTACGCAA 1 chrV:10399427-10399507 ( 51) TGATGCAA 1 chrX:5213829-5213909 ( 73) TGATGCAA 1 chrV:211905-211985 ( 27) TGATGCAA 1 chrV:534297-534377 ( 13) TGATGCAA 1 chrII:13954220-13954300 ( 29) TGATGCAA 1 chrII:12050709-12050789 ( 52) TGATGCAA 1 chrII:10012685-10012765 ( 10) TGATGCAA 1 chrI:6181167-6181247 ( 41) TGATGCAA 1 chrIV:829280-829360 ( 73) TGATGCAA 1 chrIV:7633167-7633247 ( 68) TGATGCAA 1 chrX:3022510-3022590 ( 22) TGATGCAA 1 chrV:12410556-12410636 ( 12) TGATGCAA 1 chrX:3114808-3114888 ( 50) TGATGCAA 1 chrIII:13566144-13566224 ( 51) TGATGCAA 1 chrX:6532055-6532135 ( 49) TGATGCAA 1 chrV:2138466-2138546 ( 12) TGATGCAA 1 chrX:5117267-5117347 ( 32) TGACGAAA 1 chrX:13355196-13355276 ( 71) TGACGAAA 1 chrI:2628821-2628901 ( 18) TGACGAAA 1 chrIV:9514323-9514403 ( 64) TGACGAAA 1 chrX:3256940-3257020 ( 33) TTATGCAA 1 chrX:573434-573514 ( 49) TTTCGCAA 1 chrIV:12034145-12034225 ( 42) TTTCGCAA 1 chrII:12809876-12809956 ( 33) TTTCGCAA 1 chrI:6262913-6262993 ( 57) TTTCGCAA 1 chrV:5081089-5081169 ( 53) TTTCGCAA 1 chrII:10289086-10289166 ( 39) TGTTGCAA 1 chrIII:9805056-9805136 ( 28) TTTCGCAA 1 chrIV:8377081-8377161 ( 52) TTTCGCAA 1 chrV:16160228-16160308 ( 27) TTTCGCAA 1 chrIII:8734762-8734842 ( 57) TTTCGCAA 1 chrV:10938848-10938928 ( 37) TTTCGCAA 1 chrV:4042026-4042106 ( 24) TTTCGCAA 1 chrV:16395300-16395380 ( 66) TTTCGCAA 1 chrIII:1284738-1284818 ( 48) TTTCGCAA 1 chrX:4619734-4619814 ( 61) TGATGAAA 1 chrX:3537099-3537179 ( 5) TGATGAAA 1 chrV:4024999-4025079 ( 38) TTACGAAA 1 chrV:4642838-4642918 ( 54) TGATGAAA 1 chrV:5587169-5587249 ( 4) TTACGAAA 1 chrIV:7689522-7689602 ( 31) TGATGAAA 1 chrX:14510514-14510594 ( 39) TTACGAAA 1 chrIV:10003589-10003669 ( 29) TTACGAAA 1 chrV:1629510-1629590 ( 69) TGATGAAA 1 chrIV:5603509-5603589 ( 7) TGTCGAAA 1 chrIII:1243390-1243470 ( 52) TTTTGCAA 1 chrII:8128342-8128422 ( 1) TTATGAAA 1 chrX:1044488-1044568 ( 39) TTATGAAA 1 chrIV:7165910-7165990 ( 22) TTTCGAAA 1 chrIV:14612227-14612307 ( 57) TTTCGAAA 1 chrII:11724008-11724088 ( 26) TTTCGAAA 1 chrIV:13384049-13384129 ( 52) TGTTGAAA 1 chrV:10255264-10255344 ( 64) TTTCGAAA 1 chrV:10709563-10709643 ( 16) TTTCGAAA 1 chrV:4164708-4164788 ( 65) TTTCGAAA 1 chrIII:7880438-7880518 ( 57) TGGCGCAA 1 chrV:6232045-6232125 ( 52) TTTTGAAA 1 chrX:4016628-4016708 ( 68) TTTTGAAA 1 chrIV:14103205-14103285 ( 49) TTTTGAAA 1 chrIV:2602707-2602787 ( 42) TTTTGAAA 1 chrX:6250371-6250451 ( 34) TGATGTAA 1 chrX:6905750-6905830 ( 25) TGATGTAA 1 chrX:14946568-14946648 ( 10) TGATGTAA 1 chrX:11661734-11661814 ( 59) TGATGTAA 1 chrV:8654592-8654672 ( 7) TGATGTAA 1 chrX:12878115-12878195 ( 37) TGATGTAA 1 chrV:8025393-8025473 ( 66) TGATGTAA 1 chrIII:5581206-5581286 ( 68) TTGCGCAA 1 chrV:10509011-10509091 ( 38) TGATGTAA 1 chrV:10146963-10147043 ( 25) TTATGTAA 1 chrV:5131596-5131676 ( 48) TTGTGCAA 1 chrIII:1279377-1279457 ( 33) TTTCGTAA 1 chrIV:12451382-12451462 ( 35) TTTCGTAA 1 chrI:6713046-6713126 ( 52) TTTCGTAA 1 chrIII:1308364-1308444 ( 4) TTTCGTAA 1 chrX:4142790-4142870 ( 66) TGTTGTAA 1 chrI:9862735-9862815 ( 34) TTTCGTAA 1 chrV:3805650-3805730 ( 47) TGTTGTAA 1 chrV:4038734-4038814 ( 30) TTGCGAAA 1 chrI:12426805-12426885 ( 27) TTGCGAAA 1 chrX:7236903-7236983 ( 8) TTGTGAAA 1 chrV:4969686-4969766 ( 15) TTGTGAAA 1 chrIV:12114645-12114725 ( 61) TTGTGAAA 1 chrX:5213191-5213271 ( 33) TTGTGAAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKWYGMAA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.7059 E= 7.3e-029 -1314 -1314 -1314 170 -1314 -1314 126 73 89 -1314 -103 30 -1314 115 -1314 82 -1314 -1314 229 -1314 38 115 -1314 -79 182 -1314 -1314 -1314 182 -1314 -1314 -1314 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKWYGMAA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 90 E= 7.3e-029 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.488889 0.511111 0.522222 0.000000 0.100000 0.377778 0.000000 0.455556 0.000000 0.544444 0.000000 0.000000 1.000000 0.000000 0.366667 0.455556 0.000000 0.177778 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKWYGMAA MEME-2 regular expression -------------------------------------------------------------------------------- T[TG][AT][TC]G[CA]AA -------------------------------------------------------------------------------- Time 13.36 secs. ******************************************************************************** ******************************************************************************** MOTIF GACGCAGA MEME-3 width = 8 sites = 13 llr = 142 E-value = 1.4e-003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GACGCAGA MEME-3 Description -------------------------------------------------------------------------------- Simplified A :a:1:a:8 pos.-specific C ::a:a::: probability G a::9::a2 matrix T :::::::: bits 2.3 * * * * 2.1 * * * * 1.8 ******* 1.6 ******* Relative 1.4 ******* Entropy 1.1 ******** (15.8 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GACGCAGA consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GACGCAGA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrI:6260344-6260424 53 8.09e-06 CAGGGTAAGA GACGCAGA TTGAAATGGT chrI:7381075-7381155 26 8.09e-06 AGATCAGTAA GACGCAGA CATTCTTGTA chrIV:10512875-10512955 29 8.09e-06 TGTGAATGGA GACGCAGA CATCAATTTA chrII:5874311-5874391 30 8.09e-06 TTTACATGTA GACGCAGA GACAATCGTT chrV:16309706-16309786 16 8.09e-06 ACTGAGAAGA GACGCAGA CAGTCTGACA chrIV:14675935-14676015 6 8.09e-06 ACCGT GACGCAGA GAAATAGACA chrIV:8377081-8377161 30 8.09e-06 GAGAGAAGTA GACGCAGA CATATGTTCT chrIV:12396995-12397075 62 8.09e-06 CCGAATTGGA GACGCAGA GATAGAAACA chrIV:12335454-12335534 57 8.09e-06 AGTCTTAGGA GACGCAGA CGGTGGTTGG chrII:7364227-7364307 31 1.39e-05 TACAATGTTA GACGCAGG CATATAGACA chrV:7894078-7894158 29 1.39e-05 TACCTGAAGA GACGCAGG AAACCGAGAT chrV:5131596-5131676 25 1.39e-05 AGTGGAAAGA GACGCAGG AGGCATAACA chrI:9862735-9862815 16 2.51e-05 GACGGAAACT GACACAGA GGGTGAAATA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GACGCAGA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:6260344-6260424 8.1e-06 52_[+3]_20 chrI:7381075-7381155 8.1e-06 25_[+3]_47 chrIV:10512875-10512955 8.1e-06 28_[+3]_44 chrII:5874311-5874391 8.1e-06 29_[+3]_43 chrV:16309706-16309786 8.1e-06 15_[+3]_57 chrIV:14675935-14676015 8.1e-06 5_[+3]_67 chrIV:8377081-8377161 8.1e-06 29_[+3]_43 chrIV:12396995-12397075 8.1e-06 61_[+3]_11 chrIV:12335454-12335534 8.1e-06 56_[+3]_16 chrII:7364227-7364307 1.4e-05 30_[+3]_42 chrV:7894078-7894158 1.4e-05 28_[+3]_44 chrV:5131596-5131676 1.4e-05 24_[+3]_48 chrI:9862735-9862815 2.5e-05 15_[+3]_57 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GACGCAGA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GACGCAGA width=8 seqs=13 chrI:6260344-6260424 ( 53) GACGCAGA 1 chrI:7381075-7381155 ( 26) GACGCAGA 1 chrIV:10512875-10512955 ( 29) GACGCAGA 1 chrII:5874311-5874391 ( 30) GACGCAGA 1 chrV:16309706-16309786 ( 16) GACGCAGA 1 chrIV:14675935-14676015 ( 6) GACGCAGA 1 chrIV:8377081-8377161 ( 30) GACGCAGA 1 chrIV:12396995-12397075 ( 62) GACGCAGA 1 chrIV:12335454-12335534 ( 57) GACGCAGA 1 chrII:7364227-7364307 ( 31) GACGCAGG 1 chrV:7894078-7894158 ( 29) GACGCAGG 1 chrV:5131596-5131676 ( 25) GACGCAGG 1 chrI:9862735-9862815 ( 16) GACACAGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GACGCAGA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.985 E= 1.4e-003 -1035 -1035 229 -1035 182 -1035 -1035 -1035 -1035 228 -1035 -1035 -187 -1035 217 -1035 -1035 228 -1035 -1035 182 -1035 -1035 -1035 -1035 -1035 229 -1035 144 -1035 18 -1035 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GACGCAGA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 13 E= 1.4e-003 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.076923 0.000000 0.923077 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.769231 0.000000 0.230769 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GACGCAGA MEME-3 regular expression -------------------------------------------------------------------------------- GACGCAG[AG] -------------------------------------------------------------------------------- Time 16.81 secs. ******************************************************************************** ******************************************************************************** MOTIF RRAGARAR MEME-4 width = 8 sites = 35 llr = 292 E-value = 7.0e-002 ******************************************************************************** -------------------------------------------------------------------------------- Motif RRAGARAR MEME-4 Description -------------------------------------------------------------------------------- Simplified A 46a:a5a5 pos.-specific C :::::::: probability G 64:a:5:5 matrix T :::::::: bits 2.3 * 2.1 * 1.8 *** * 1.6 *** * Relative 1.4 *** * Entropy 1.1 ******** (12.0 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GAAGAAAG consensus AG G A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RRAGARAR MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIV:11068477-11068557 33 1.11e-05 TTTCAATGTT GAAGAGAG ATACGTGTGT chrIII:9457573-9457653 26 1.11e-05 TTGAAACAAG GAAGAGAG ACCCAGGATT chrV:5780150-5780230 3 1.11e-05 GA GAAGAGAG ACAGAGTGTT chrIV:14272634-14272714 53 1.91e-05 TCTCAAAGAG GGAGAGAG TGGACACACA chrI:3405783-3405863 71 1.91e-05 GGGAGTCATG GGAGAGAG TA chrIII:8739917-8739997 28 3.45e-05 TCCCTGCACG GAAGAAAG GTTGAATGGG chrIV:5598679-5598759 24 3.45e-05 ATCCTTTTCC GAAGAAAG TGTGTATGCA chrIII:5200574-5200654 70 3.45e-05 TTTGGTGGTC GAAGAAAG ATA chrIV:13748952-13749032 34 3.45e-05 AAAATTGAAA GAAGAAAG ACGAAAAGTG chrIV:8377081-8377161 73 6.10e-05 TTCGAAATTT GAAGAGAA chrI:6250086-6250166 14 6.10e-05 ATAAGAATGC GGAGAAAG TGTAAAAAGA chrIV:16496676-16496756 61 7.65e-05 TTGTTAGAGC AAAGAGAG ATAGATGGCC chrIV:6748608-6748688 19 7.65e-05 AGAGATAGAA AAAGAGAG CAAAGAAAAA chrV:5851765-5851845 40 7.65e-05 AACAAAAGAG AAAGAGAG AAAGGTAATA chrIV:14103205-14103285 38 8.76e-05 AACTGGTGGA GGAGAGAA AGGTTTTGAA chrI:7085940-7086020 33 8.76e-05 GACGGAGGAT GGAGAGAA AAAGAGGTTA chrV:5087152-5087232 70 8.76e-05 TGTTCCCGTT GGAGAGAA TTT chrIII:9905546-9905626 59 1.20e-04 GGGCATGACG Gaagaaaa aaccaaagaa chrIV:2193735-2193815 32 1.20e-04 AGAGTTTAGA GAAGAAAA TTGCGTCATT chrIV:6500957-6501037 38 1.20e-04 AACGAGAAAG AGAGAGAG ACGTACTCTC chrX:12914382-12914462 53 1.20e-04 GCAAACATTT GAAGAAAA AAAACTAGTC chrIII:11660829-11660909 48 1.20e-04 CAGAGAAATG AGAGAGAG ATAGAAGGAG chrV:2135483-2135563 1 1.20e-04 . AGAGAGAG GTGATAGCGC chrIV:12335454-12335534 40 1.20e-04 AGGCGTAGTG GAAGAAAA GTCTTAGGAG chrV:16395300-16395380 10 1.20e-04 ATTTGCGAG AGAGAGAG GTTAGAGAAC chrV:3805650-3805730 15 1.20e-04 GTGAGTAGTA GAAGAAAA AGTAACTAAA chrX:7236903-7236983 18 1.41e-04 TTGTGAAAAG AAAGAAAG TGGTAGCCGA chrI:6713046-6713126 66 1.57e-04 GTAATTCAGA GGAGAAAA TATGGCC chrIV:14128366-14128446 36 1.94e-04 AGGCTGGTAG AGAGAAAG AGACAAGCCA chrV:12287814-12287894 28 1.94e-04 TCTTTGTCAA AAAGAGAA AATGTGCTAG chrIV:13231515-13231595 13 2.39e-04 AAATGAGCAA AAAGAAAA AATTCCTGCC chrII:7364227-7364307 11 2.39e-04 GACAAGTAGA AAAGAAAA CATACAATGT chrIII:6144747-6144827 16 2.39e-04 CGAGATTGTA AAAGAAAA ATGATGATGA chrV:2138466-2138546 47 2.39e-04 GTCATTCGAA AAAGAAAA AAAAACAGAG chrIII:1243390-1243470 2 2.60e-04 C AGAGAAAA AGAGCGTCAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RRAGARAR MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:11068477-11068557 1.1e-05 32_[+4]_40 chrIII:9457573-9457653 1.1e-05 25_[+4]_47 chrV:5780150-5780230 1.1e-05 2_[+4]_70 chrIV:14272634-14272714 1.9e-05 52_[+4]_20 chrI:3405783-3405863 1.9e-05 70_[+4]_2 chrIII:8739917-8739997 3.5e-05 27_[+4]_45 chrIV:5598679-5598759 3.5e-05 23_[+4]_49 chrIII:5200574-5200654 3.5e-05 69_[+4]_3 chrIV:13748952-13749032 3.5e-05 33_[+4]_39 chrIV:8377081-8377161 6.1e-05 72_[+4] chrI:6250086-6250166 6.1e-05 13_[+4]_59 chrIV:16496676-16496756 7.6e-05 60_[+4]_12 chrIV:6748608-6748688 7.6e-05 18_[+4]_54 chrV:5851765-5851845 7.6e-05 39_[+4]_33 chrIV:14103205-14103285 8.8e-05 37_[+4]_35 chrI:7085940-7086020 8.8e-05 32_[+4]_40 chrV:5087152-5087232 8.8e-05 69_[+4]_3 chrIII:9905546-9905626 0.00012 58_[+4]_14 chrIV:2193735-2193815 0.00012 31_[+4]_41 chrIV:6500957-6501037 0.00012 37_[+4]_35 chrX:12914382-12914462 0.00012 52_[+4]_20 chrIII:11660829-11660909 0.00012 47_[+4]_25 chrV:2135483-2135563 0.00012 [+4]_72 chrIV:12335454-12335534 0.00012 39_[+4]_33 chrV:16395300-16395380 0.00012 9_[+4]_63 chrV:3805650-3805730 0.00012 14_[+4]_58 chrX:7236903-7236983 0.00014 17_[+4]_55 chrI:6713046-6713126 0.00016 65_[+4]_7 chrIV:14128366-14128446 0.00019 35_[+4]_37 chrV:12287814-12287894 0.00019 27_[+4]_45 chrIV:13231515-13231595 0.00024 12_[+4]_60 chrII:7364227-7364307 0.00024 10_[+4]_62 chrIII:6144747-6144827 0.00024 15_[+4]_57 chrV:2138466-2138546 0.00024 46_[+4]_26 chrIII:1243390-1243470 0.00026 1_[+4]_71 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RRAGARAR MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RRAGARAR width=8 seqs=35 chrIV:11068477-11068557 ( 33) GAAGAGAG 1 chrIII:9457573-9457653 ( 26) GAAGAGAG 1 chrV:5780150-5780230 ( 3) GAAGAGAG 1 chrIV:14272634-14272714 ( 53) GGAGAGAG 1 chrI:3405783-3405863 ( 71) GGAGAGAG 1 chrIII:8739917-8739997 ( 28) GAAGAAAG 1 chrIV:5598679-5598759 ( 24) GAAGAAAG 1 chrIII:5200574-5200654 ( 70) GAAGAAAG 1 chrIV:13748952-13749032 ( 34) GAAGAAAG 1 chrIV:8377081-8377161 ( 73) GAAGAGAA 1 chrI:6250086-6250166 ( 14) GGAGAAAG 1 chrIV:16496676-16496756 ( 61) AAAGAGAG 1 chrIV:6748608-6748688 ( 19) AAAGAGAG 1 chrV:5851765-5851845 ( 40) AAAGAGAG 1 chrIV:14103205-14103285 ( 38) GGAGAGAA 1 chrI:7085940-7086020 ( 33) GGAGAGAA 1 chrV:5087152-5087232 ( 70) GGAGAGAA 1 chrIII:9905546-9905626 ( 59) GAAGAAAA 1 chrIV:2193735-2193815 ( 32) GAAGAAAA 1 chrIV:6500957-6501037 ( 38) AGAGAGAG 1 chrX:12914382-12914462 ( 53) GAAGAAAA 1 chrIII:11660829-11660909 ( 48) AGAGAGAG 1 chrV:2135483-2135563 ( 1) AGAGAGAG 1 chrIV:12335454-12335534 ( 40) GAAGAAAA 1 chrV:16395300-16395380 ( 10) AGAGAGAG 1 chrV:3805650-3805730 ( 15) GAAGAAAA 1 chrX:7236903-7236983 ( 18) AAAGAAAG 1 chrI:6713046-6713126 ( 66) GGAGAAAA 1 chrIV:14128366-14128446 ( 36) AGAGAAAG 1 chrV:12287814-12287894 ( 28) AAAGAGAA 1 chrIV:13231515-13231595 ( 13) AAAGAAAA 1 chrII:7364227-7364307 ( 11) AAAGAAAA 1 chrIII:6144747-6144827 ( 16) AAAGAAAA 1 chrV:2138466-2138546 ( 47) AAAGAAAA 1 chrIII:1243390-1243470 ( 2) AGAGAAAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RRAGARAR MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.0506 E= 7.0e-002 60 -1177 148 -1177 115 -1177 86 -1177 182 -1177 -1177 -1177 -1177 -1177 229 -1177 182 -1177 -1177 -1177 86 -1177 125 -1177 182 -1177 -1177 -1177 69 -1177 141 -1177 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RRAGARAR MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 35 E= 7.0e-002 0.428571 0.000000 0.571429 0.000000 0.628571 0.000000 0.371429 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.514286 0.000000 0.485714 0.000000 1.000000 0.000000 0.000000 0.000000 0.457143 0.000000 0.542857 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RRAGARAR MEME-4 regular expression -------------------------------------------------------------------------------- [GA][AG]AGA[AG]A[GA] -------------------------------------------------------------------------------- Time 20.24 secs. ******************************************************************************** ******************************************************************************** MOTIF CTGCGTCT MEME-5 width = 8 sites = 13 llr = 136 E-value = 1.1e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTGCGTCT MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C 9::8::9: probability G 1:a:a:1: matrix T :a:2:a:a bits 2.3 * * 2.1 * * 1.8 * * * * 1.6 ******** Relative 1.4 ******** Entropy 1.1 ******** (15.0 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CTGCGTCT consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCGTCT MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrV:4742329-4742409 52 1.05e-05 ATTTCTCTTG CTGCGTCT CTATTGTCTA chrV:610391-610471 61 1.05e-05 CCTATTCTTG CTGCGTCT CTTCTATTTC chrI:6569286-6569366 27 1.05e-05 GTGCAGCTCT CTGCGTCT CCGCTTTCAA chrI:4030682-4030762 33 1.05e-05 ATCGTGCTAT CTGCGTCT CTCCATCTCA chrV:14773190-14773270 49 1.05e-05 GTTTCTCATT CTGCGTCT CCTTTTTCTT chrIII:5900814-5900894 36 1.05e-05 ACCTGTCAGT CTGCGTCT CTAACTCTTC chrIII:7719488-7719568 26 1.05e-05 CAATTTCCCT CTGCGTCT CTGACCATCT chrV:5081089-5081169 24 1.05e-05 GTGTAGCCGT CTGCGTCT ATTCCTTAAC chrV:534297-534377 68 1.05e-05 ACCTAGCCAC CTGCGTCT TTCCT chrII:6028707-6028787 9 2.62e-05 AGGGCTGT CTGTGTCT CTAAAGATTG chrII:10445845-10445925 72 2.62e-05 CTCGTTTTGC CTGTGTCT C chrIV:12198980-12199060 64 4.71e-05 CTCATTTTTT GTGCGTCT CGAGTAGTT chrI:6238461-6238541 44 4.71e-05 ATCCATATGT CTGCGTGT CCACATCATT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCGTCT MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:4742329-4742409 1e-05 51_[+5]_21 chrV:610391-610471 1e-05 60_[+5]_12 chrI:6569286-6569366 1e-05 26_[+5]_46 chrI:4030682-4030762 1e-05 32_[+5]_40 chrV:14773190-14773270 1e-05 48_[+5]_24 chrIII:5900814-5900894 1e-05 35_[+5]_37 chrIII:7719488-7719568 1e-05 25_[+5]_47 chrV:5081089-5081169 1e-05 23_[+5]_49 chrV:534297-534377 1e-05 67_[+5]_5 chrII:6028707-6028787 2.6e-05 8_[+5]_64 chrII:10445845-10445925 2.6e-05 71_[+5]_1 chrIV:12198980-12199060 4.7e-05 63_[+5]_9 chrI:6238461-6238541 4.7e-05 43_[+5]_29 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCGTCT MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTGCGTCT width=8 seqs=13 chrV:4742329-4742409 ( 52) CTGCGTCT 1 chrV:610391-610471 ( 61) CTGCGTCT 1 chrI:6569286-6569366 ( 27) CTGCGTCT 1 chrI:4030682-4030762 ( 33) CTGCGTCT 1 chrV:14773190-14773270 ( 49) CTGCGTCT 1 chrIII:5900814-5900894 ( 36) CTGCGTCT 1 chrIII:7719488-7719568 ( 26) CTGCGTCT 1 chrV:5081089-5081169 ( 24) CTGCGTCT 1 chrV:534297-534377 ( 68) CTGCGTCT 1 chrII:6028707-6028787 ( 9) CTGTGTCT 1 chrII:10445845-10445925 ( 72) CTGTGTCT 1 chrIV:12198980-12199060 ( 64) GTGCGTCT 1 chrI:6238461-6238541 ( 44) CTGCGTGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCGTCT MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.985 E= 1.1e-001 -1035 217 -141 -1035 -1035 -1035 -1035 170 -1035 -1035 229 -1035 -1035 204 -1035 -100 -1035 -1035 229 -1035 -1035 -1035 -1035 170 -1035 217 -141 -1035 -1035 -1035 -1035 170 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCGTCT MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 13 E= 1.1e-001 0.000000 0.923077 0.076923 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.846154 0.000000 0.153846 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.923077 0.076923 0.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCGTCT MEME-5 regular expression -------------------------------------------------------------------------------- CTGCGTCT -------------------------------------------------------------------------------- Time 23.62 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:10509011-10509091 2.30e-03 16_[+1(2.01e-05)]_56 chrIV:9718023-9718103 9.22e-02 36_[+1(2.01e-05)]_36 chrV:2138466-2138546 6.59e-04 11_[+2(4.90e-05)]_61 chrX:5213191-5213271 3.55e-02 40_[+1(2.01e-05)]_32 chrV:3805650-3805730 3.53e-04 36_[+1(3.45e-05)]_36 chrX:6532055-6532135 1.73e-01 48_[+2(4.90e-05)]_24 chrV:4164708-4164788 1.64e-01 80 chrIII:13566144-13566224 8.97e-03 50_[+2(4.90e-05)]_22 chrV:4862935-4863015 2.64e-03 47_[+2(1.22e-05)]_25 chrIII:5581206-5581286 1.00e-01 80 chrV:12963349-12963429 6.33e-02 23_[+1(3.45e-05)]_49 chrII:5628600-5628680 7.93e-02 43_[+1(2.01e-05)]_29 chrX:3114808-3114888 1.85e-02 17_[+2(7.91e-05)]_24_[+2(4.90e-05)]_\ 23 chrI:6250086-6250166 6.97e-02 13_[+4(6.10e-05)]_59 chrV:12410556-12410636 7.93e-02 11_[+2(4.90e-05)]_61 chrV:5780150-5780230 2.17e-04 2_[+4(1.11e-05)]_70 chrV:12741857-12741937 2.25e-02 28_[+1(2.01e-05)]_44 chrX:3022510-3022590 5.80e-02 21_[+2(4.90e-05)]_51 chrII:14297209-14297289 1.88e-01 29_[+1(2.01e-05)]_43 chrV:1629510-1629590 6.14e-02 80 chrI:7598141-7598221 5.88e-04 14_[+2(1.22e-05)]_13_[+1(6.48e-05)]_\ 37 chrIV:13080266-13080346 8.14e-02 12_[+1(2.01e-05)]_60 chrX:1044488-1044568 7.22e-03 48_[+1(2.01e-05)]_24 chrX:1148614-1148694 6.41e-01 80 chrIII:7358794-7358874 8.31e-02 57_[+1(2.01e-05)]_15 chrIII:1284738-1284818 2.67e-03 80 chrV:16395300-16395380 2.72e-03 80 chrX:16354766-16354846 2.28e-02 21_[+1(2.01e-05)]_51 chrV:8025393-8025473 5.75e-02 80 chrIV:12113240-12113320 2.61e-01 80 chrV:4042026-4042106 9.12e-02 80 chrV:5131596-5131676 1.69e-03 24_[+3(1.39e-05)]_48 chrX:3256940-3257020 5.49e-02 80 chrX:7233843-7233923 5.07e-02 27_[+1(2.01e-05)]_45 chrIV:7633167-7633247 3.59e-03 67_[+2(4.90e-05)]_5 chrIII:1243390-1243470 1.06e-02 80 chrIV:14219802-14219882 8.93e-01 80 chrIV:13748952-13749032 9.04e-03 33_[+4(3.45e-05)]_39 chrII:11135870-11135950 1.49e-01 80 chrIII:6144747-6144827 2.16e-02 80 chrIV:829280-829360 1.11e-02 72_[+2(4.90e-05)] chrI:8798296-8798376 1.16e-01 19_[+1(6.48e-05)]_53 chrI:6181167-6181247 5.34e-02 40_[+2(4.90e-05)]_32 chrIV:9514323-9514403 5.09e-02 63_[+2(7.91e-05)]_9 chrI:9862735-9862815 2.37e-04 15_[+3(2.51e-05)]_57 chrX:12691490-12691570 2.73e-02 62_[+1(2.01e-05)]_10 chrV:5087152-5087232 1.33e-03 28_[+5(7.84e-05)]_33_[+4(8.76e-05)]_\ 3 chrII:10445845-10445925 1.59e-04 13_[+1(2.01e-05)]_50_[+5(2.62e-05)]_\ 1 chrII:10012685-10012765 1.25e-02 9_[+2(4.90e-05)]_63 chrV:10709563-10709643 9.38e-02 80 chrX:12878115-12878195 1.91e-01 80 chrV:10938848-10938928 1.01e-01 80 chrIII:5200574-5200654 3.12e-04 14_[+1(2.01e-05)]_47_[+4(3.45e-05)]_\ 3 chrIV:2602707-2602787 1.13e-02 19_[+1(6.48e-05)]_53 chrIII:8392470-8392550 7.79e-02 38_[+1(2.01e-05)]_34 chrX:2317662-2317742 6.35e-02 80 chrII:7421135-7421215 1.49e-01 80 chrII:12050709-12050789 7.17e-02 51_[+2(4.90e-05)]_21 chrV:10255264-10255344 3.67e-02 80 chrV:3803480-3803560 2.66e-03 21_[+1(2.01e-05)]_51 chrX:4142790-4142870 1.50e-02 31_[+1(2.01e-05)]_41 chrI:12426805-12426885 2.04e-01 80 chrIII:8734762-8734842 1.00e-04 67_[+1(2.01e-05)]_5 chrV:4908719-4908799 6.52e-01 80 chrIV:13880964-13881044 6.55e-01 80 chrI:7087333-7087413 2.38e-02 5_[+1(9.26e-05)]_67 chrV:7894078-7894158 4.16e-04 28_[+3(1.39e-05)]_14_[+1(9.26e-05)]_\ 22 chrIV:12335454-12335534 4.06e-03 56_[+3(8.09e-06)]_16 chrIV:14507125-14507205 1.50e-01 80 chrX:12875750-12875830 4.78e-01 80 chrIII:3615596-3615676 7.02e-02 50_[+1(2.01e-05)]_22 chrIV:5588240-5588320 5.07e-02 21_[+1(2.01e-05)]_51 chrII:13954220-13954300 6.06e-02 28_[+2(4.90e-05)]_44 chrX:4009086-4009166 2.33e-01 80 chrIV:12396995-12397075 2.09e-02 61_[+3(8.09e-06)]_11 chrIV:13384049-13384129 3.16e-02 80 chrX:17385216-17385296 6.92e-01 80 chrV:12733566-12733646 9.36e-01 80 chrIV:12114645-12114725 8.24e-02 80 chrX:2802895-2802975 5.22e-01 80 chrX:7952429-7952509 1.25e-01 44_[+1(2.01e-05)]_28 chrIV:10003589-10003669 1.19e-01 80 chrV:16160228-16160308 1.05e-01 80 chrIV:3652300-3652380 1.45e-02 36_[+1(2.01e-05)]_36 chrV:8654592-8654672 1.31e-01 80 chrIV:12464981-12465061 6.20e-01 80 chrIV:8377081-8377161 1.90e-05 29_[+3(8.09e-06)]_35_[+4(6.10e-05)] chrII:11724008-11724088 1.58e-02 8_[+1(2.01e-05)]_36_[+1(2.01e-05)]_\ 20 chrV:12287814-12287894 4.78e-02 80 chrV:534297-534377 2.37e-03 12_[+2(4.90e-05)]_47_[+5(1.05e-05)]_\ 5 chrI:7085940-7086020 5.52e-02 32_[+4(8.76e-05)]_40 chrIII:3952199-3952279 1.50e-01 80 chrV:12409181-12409261 4.34e-02 47_[+1(2.01e-05)]_5_[+1(6.48e-05)]_\ 12 chrIV:14606644-14606724 3.89e-01 80 chrIV:14612227-14612307 2.14e-02 80 chrX:4139980-4140060 7.89e-03 43_[+1(2.01e-05)]_29 chrX:11661734-11661814 2.85e-01 80 chrIII:9805056-9805136 3.59e-02 80 chrII:10289086-10289166 1.74e-02 80 chrV:5081089-5081169 4.46e-04 23_[+5(1.05e-05)]_49 chrX:16287241-16287321 1.23e-01 80 chrIII:7719488-7719568 2.43e-02 25_[+5(1.05e-05)]_47 chrIII:1308364-1308444 4.64e-02 80 chrIV:14675935-14676015 4.63e-05 5_[+3(8.09e-06)]_67 chrV:2135483-2135563 1.01e-04 29_[+1(2.01e-05)]_43 chrX:13267398-13267478 1.65e-02 23_[+1(3.45e-05)]_49 chrIII:5900814-5900894 1.31e-03 11_[+1(3.45e-05)]_16_[+5(1.05e-05)]_\ 37 chrIII:8400622-8400702 2.86e-01 80 chrV:5687740-5687820 2.52e-01 23_[+1(9.26e-05)]_49 chrIV:7391120-7391200 4.82e-02 47_[+1(2.01e-05)]_25 chrX:14510514-14510594 6.98e-02 80 chrII:2420871-2420951 6.08e-01 80 chrX:2316355-2316435 6.91e-03 80 chrV:14773190-14773270 4.33e-02 48_[+5(1.05e-05)]_24 chrV:211905-211985 5.25e-02 26_[+2(4.90e-05)]_46 chrIV:11748964-11749044 1.57e-01 80 chrV:14948735-14948815 8.47e-01 80 chrIV:13206025-13206105 4.05e-01 80 chrIV:7689522-7689602 5.10e-02 80 chrIV:12128036-12128116 8.45e-01 80 chrIII:11660829-11660909 2.26e-02 80 chrI:6238461-6238541 1.64e-01 43_[+5(4.71e-05)]_29 chrX:4507248-4507328 9.81e-02 80 chrX:14946568-14946648 3.89e-02 80 chrIV:5586396-5586476 7.35e-01 80 chrV:5587169-5587249 4.00e-02 80 chrIII:9328859-9328939 3.93e-02 80 chrII:8961668-8961748 3.08e-01 80 chrIV:7165910-7165990 1.28e-01 80 chrX:6905750-6905830 4.71e-01 80 chrIV:13877855-13877935 2.22e-02 50_[+3(8.89e-05)]_22 chrIV:7507491-7507571 1.10e-02 50_[+1(2.01e-05)]_22 chrIV:12089050-12089130 2.07e-01 80 chrI:6713046-6713126 1.12e-02 80 chrV:13402639-13402719 2.08e-01 80 chrII:6561523-6561603 3.95e-01 80 chrI:8013451-8013531 6.71e-02 80 chrV:14003901-14003981 4.29e-01 80 chrIV:9217090-9217170 1.06e-02 [+2(1.22e-05)]_72 chrI:6262913-6262993 1.06e-01 80 chrIII:13101206-13101286 6.61e-02 21_[+1(6.48e-05)]_51 chrIV:14128366-14128446 1.24e-01 80 chrX:5213829-5213909 2.23e-01 72_[+2(4.90e-05)] chrI:4030682-4030762 2.29e-03 32_[+5(1.05e-05)]_40 chrIV:5603509-5603589 8.74e-02 80 chrX:11415390-11415470 3.79e-01 80 chrIII:7880438-7880518 7.18e-03 80 chrX:6745144-6745224 1.38e-02 2_[+1(2.01e-05)]_70 chrX:8018578-8018658 5.01e-01 80 chrIII:6359583-6359663 2.01e-01 80 chrIV:13075788-13075868 7.71e-01 80 chrX:6250371-6250451 2.18e-01 80 chrIV:12198980-12199060 1.17e-01 63_[+5(4.71e-05)]_9 chrX:12914382-12914462 5.39e-03 80 chrII:8959372-8959452 4.39e-01 80 chrIII:9457573-9457653 2.57e-03 25_[+4(1.11e-05)]_47 chrX:9544484-9544564 3.96e-01 80 chrI:7867164-7867244 1.27e-01 80 chrII:12809876-12809956 2.38e-02 80 chrII:6028707-6028787 1.07e-02 8_[+5(2.62e-05)]_64 chrIII:13563203-13563283 5.77e-01 80 chrV:10937488-10937568 7.66e-01 80 chrV:7822817-7822897 5.25e-01 80 chrX:5210667-5210747 4.24e-02 44_[+5(7.84e-05)]_28 chrI:6569286-6569366 8.56e-04 2_[+1(2.01e-05)]_16_[+5(1.05e-05)]_\ 46 chrV:10399427-10399507 3.89e-02 50_[+2(4.90e-05)]_22 chrV:4642838-4642918 3.25e-01 80 chrV:4024999-4025079 2.36e-02 80 chrV:16309706-16309786 4.69e-05 15_[+3(8.09e-06)]_57 chrV:11791568-11791648 4.88e-02 26_[+1(2.01e-05)]_46 chrIII:9153122-9153202 2.09e-01 80 chrII:10204799-10204879 3.72e-01 80 chrIV:5598679-5598759 4.20e-02 23_[+4(3.45e-05)]_49 chrV:4038734-4038814 1.01e-01 80 chrI:7550348-7550428 8.53e-02 80 chrIV:6500957-6501037 1.18e-01 33_[+4(7.65e-05)]_39 chrIV:5590317-5590397 9.47e-01 80 chrIV:12034145-12034225 1.34e-01 80 chrIV:12527406-12527486 1.17e-01 80 chrV:123611-123691 2.15e-02 32_[+2(4.90e-05)]_40 chrII:8485805-8485885 2.06e-01 80 chrV:5851765-5851845 1.88e-01 39_[+4(7.65e-05)]_33 chrII:13632325-13632405 5.19e-01 80 chrIII:10290685-10290765 1.69e-01 32_[+2(4.90e-05)]_40 chrX:4564821-4564901 8.34e-01 80 chrIII:9620381-9620461 7.91e-01 80 chrIV:12451382-12451462 6.70e-04 80 chrV:610391-610471 7.88e-04 5_[+1(2.01e-05)]_47_[+5(1.05e-05)]_\ 12 chrIV:13013387-13013467 2.86e-01 80 chrIV:14103205-14103285 3.32e-02 37_[+4(8.76e-05)]_35 chrV:4969686-4969766 2.13e-01 80 chrIV:15021112-15021192 8.78e-01 80 chrI:2628821-2628901 7.47e-04 17_[+2(7.91e-05)]_13_[+1(9.26e-05)]_\ 34 chrX:7866672-7866752 9.02e-02 80 chrII:5874311-5874391 7.66e-03 29_[+3(8.09e-06)]_43 chrX:10909880-10909960 1.11e-01 80 chrX:7230560-7230640 9.11e-03 65_[+2(4.90e-05)]_7 chrI:3405783-3405863 8.66e-02 70_[+4(1.91e-05)]_2 chrI:13576509-13576589 4.84e-04 37_[+1(3.45e-05)]_6_[+5(8.88e-05)]_\ 21 chrV:7413202-7413282 1.17e-01 80 chrII:14917051-14917131 6.60e-01 80 chrX:4016628-4016708 1.32e-01 80 chrX:12167798-12167878 8.32e-01 80 chrI:1695213-1695293 8.63e-01 80 chrII:4494644-4494724 4.41e-01 80 chrX:17684889-17684969 2.65e-01 80 chrV:13704155-13704235 6.04e-01 80 chrX:6059458-6059538 2.61e-01 80 chrII:8128342-8128422 2.02e-01 80 chrIV:14272634-14272714 1.95e-02 52_[+4(1.91e-05)]_20 chrI:8788938-8789018 1.55e-01 80 chrX:16793608-16793688 2.53e-01 80 chrX:3537099-3537179 1.85e-01 80 chrX:573434-573514 1.87e-02 80 chrIII:1279377-1279457 9.05e-03 80 chrX:3021612-3021692 4.22e-01 80 chrII:7364227-7364307 2.85e-03 30_[+3(1.39e-05)]_42 chrX:4619734-4619814 3.02e-01 80 chrII:8450861-8450941 9.68e-01 80 chrX:13355196-13355276 1.05e-03 11_[+1(2.01e-05)]_51_[+2(7.91e-05)]_\ 2 chrV:6232045-6232125 3.81e-02 80 chrX:5117267-5117347 1.53e-02 31_[+2(7.91e-05)]_41 chrIV:2193735-2193815 2.49e-03 39_[+1(3.45e-05)]_33 chrIV:10512875-10512955 3.71e-02 28_[+3(8.09e-06)]_44 chrIV:6748608-6748688 2.47e-01 18_[+4(7.65e-05)]_54 chrII:15212609-15212689 7.30e-01 80 chrIV:8232555-8232635 1.84e-02 11_[+3(3.32e-05)]_61 chrIV:16496676-16496756 8.70e-03 17_[+5(7.84e-05)]_35_[+4(7.65e-05)]_\ 12 chrIV:12156790-12156870 7.53e-01 80 chrIV:11068477-11068557 8.25e-03 32_[+4(1.11e-05)]_40 chrV:4742329-4742409 5.34e-02 51_[+5(1.05e-05)]_21 chrI:7381075-7381155 2.20e-02 25_[+3(8.09e-06)]_47 chrV:4483093-4483173 9.25e-02 34_[+1(6.48e-05)]_38 chrIII:9905546-9905626 5.89e-02 80 chrII:8744655-8744735 6.90e-02 80 chrV:15664165-15664245 1.75e-01 59_[+1(6.48e-05)]_13 chrX:15076320-15076400 2.28e-02 22_[+1(2.01e-05)]_50 chrIII:8739917-8739997 1.30e-01 27_[+4(3.45e-05)]_45 chrII:5931240-5931320 2.22e-01 80 chrI:14898786-14898866 3.05e-01 80 chrII:5698379-5698459 5.35e-01 80 chrIV:13231515-13231595 3.95e-02 80 chrI:2577419-2577499 1.06e-01 51_[+1(9.26e-05)]_21 chrI:6236008-6236088 7.37e-01 80 chrX:7659865-7659945 1.49e-01 80 chrX:11358306-11358386 5.15e-02 29_[+1(6.48e-05)]_43 chrV:20763383-20763463 2.06e-01 80 chrV:10146963-10147043 8.89e-02 80 chrX:7236903-7236983 2.49e-02 80 chrI:6260344-6260424 4.79e-02 52_[+3(8.09e-06)]_20 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n08.farnam.hpc.yale.internal ********************************************************************************