******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/worm/fasta/RankLinear2.0_40/nhr-111.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrV:15000462-15000542 1.0000 80 chrIII:13204997-13205077 1.0000 80 chrII:8746396-8746476 1.0000 80 chrIV:16168856-16168936 1.0000 80 chrIV:4106632-4106712 1.0000 80 chrIV:7043529-7043609 1.0000 80 chrI:1150195-1150275 1.0000 80 chrIII:8445288-8445368 1.0000 80 chrII:9934783-9934863 1.0000 80 chrV:19430498-19430578 1.0000 80 chrV:728953-729033 1.0000 80 chrIV:13389350-13389430 1.0000 80 chrV:11225901-11225981 1.0000 80 chrI:1157606-1157686 1.0000 80 chrX:1490063-1490143 1.0000 80 chrII:4565376-4565456 1.0000 80 chrIII:1951560-1951640 1.0000 80 chrV:2664640-2664720 1.0000 80 chrV:727777-727857 1.0000 80 chrI:5079716-5079796 1.0000 80 chrV:5592060-5592140 1.0000 80 chrIV:13893355-13893435 1.0000 80 chrIV:13035505-13035585 1.0000 80 chrI:3378004-3378084 1.0000 80 chrX:15146565-15146645 1.0000 80 chrIII:4653704-4653784 1.0000 80 chrV:11119632-11119712 1.0000 80 chrIV:1727802-1727882 1.0000 80 chrI:7617567-7617647 1.0000 80 chrIII:13765972-13766052 1.0000 80 chrV:103209-103289 1.0000 80 chrI:5372426-5372506 1.0000 80 chrV:5667476-5667556 1.0000 80 chrII:14155819-14155899 1.0000 80 chrII:5353825-5353905 1.0000 80 chrII:11976064-11976144 1.0000 80 chrIV:653245-653325 1.0000 80 chrIII:5277936-5278016 1.0000 80 chrI:9420748-9420828 1.0000 80 chrIII:2811616-2811696 1.0000 80 chrX:13283625-13283705 1.0000 80 chrIII:11352979-11353059 1.0000 80 chrIV:2772451-2772531 1.0000 80 chrIV:3260862-3260942 1.0000 80 chrII:10657895-10657975 1.0000 80 chrIV:15932005-15932085 1.0000 80 chrII:4228529-4228609 1.0000 80 chrI:3826669-3826749 1.0000 80 chrV:2131975-2132055 1.0000 80 chrII:1105244-1105324 1.0000 80 chrX:9238879-9238959 1.0000 80 chrII:8187645-8187725 1.0000 80 chrIV:2057690-2057770 1.0000 80 chrV:1875643-1875723 1.0000 80 chrX:10781012-10781092 1.0000 80 chrV:12510128-12510208 1.0000 80 chrI:10570221-10570301 1.0000 80 chrIII:9783462-9783542 1.0000 80 chrI:14461893-14461973 1.0000 80 chrV:4190302-4190382 1.0000 80 chrX:8969875-8969955 1.0000 80 chrV:15454420-15454500 1.0000 80 chrI:1441990-1442070 1.0000 80 chrI:5376792-5376872 1.0000 80 chrIV:14576601-14576681 1.0000 80 chrII:1150300-1150380 1.0000 80 chrIII:6123841-6123921 1.0000 80 chrIII:9782108-9782188 1.0000 80 chrI:7016157-7016237 1.0000 80 chrI:14718921-14719001 1.0000 80 chrII:551420-551500 1.0000 80 chrI:13547476-13547556 1.0000 80 chrIII:11921801-11921881 1.0000 80 chrII:3500648-3500728 1.0000 80 chrIII:13720358-13720438 1.0000 80 chrII:5901808-5901888 1.0000 80 chrII:8441658-8441738 1.0000 80 chrIV:15693453-15693533 1.0000 80 chrIII:1625806-1625886 1.0000 80 chrII:12344977-12345057 1.0000 80 chrIII:13463944-13464024 1.0000 80 chrIII:1419966-1420046 1.0000 80 chrIV:13392325-13392405 1.0000 80 chrV:14688183-14688263 1.0000 80 chrIII:10537237-10537317 1.0000 80 chrII:13897423-13897503 1.0000 80 chrV:117459-117539 1.0000 80 chrI:2878528-2878608 1.0000 80 chrII:14351043-14351123 1.0000 80 chrIII:13604812-13604892 1.0000 80 chrIII:4491460-4491540 1.0000 80 chrV:14364943-14365023 1.0000 80 chrI:852229-852309 1.0000 80 chrII:11376695-11376775 1.0000 80 chrV:1158542-1158622 1.0000 80 chrV:1154821-1154901 1.0000 80 chrX:16930886-16930966 1.0000 80 chrX:7323742-7323822 1.0000 80 chrIV:9564813-9564893 1.0000 80 chrV:12065547-12065627 1.0000 80 chrV:14235116-14235196 1.0000 80 chrV:6335358-6335438 1.0000 80 chrIV:11756067-11756147 1.0000 80 chrX:11603290-11603370 1.0000 80 chrV:16136773-16136853 1.0000 80 chrIII:12598876-12598956 1.0000 80 chrIV:1067558-1067638 1.0000 80 chrX:14476848-14476928 1.0000 80 chrX:8608776-8608856 1.0000 80 chrII:10931498-10931578 1.0000 80 chrX:6867882-6867962 1.0000 80 chrIII:4195531-4195611 1.0000 80 chrIII:5506277-5506357 1.0000 80 chrII:6587489-6587569 1.0000 80 chrV:13090660-13090740 1.0000 80 chrV:9734069-9734149 1.0000 80 chrV:9318183-9318263 1.0000 80 chrV:8235430-8235510 1.0000 80 chrV:16595131-16595211 1.0000 80 chrI:7656720-7656800 1.0000 80 chrX:11872331-11872411 1.0000 80 chrIII:5230606-5230686 1.0000 80 chrIV:991539-991619 1.0000 80 chrX:5407382-5407462 1.0000 80 chrIII:4015575-4015655 1.0000 80 chrIII:13713901-13713981 1.0000 80 chrIII:8686033-8686113 1.0000 80 chrII:4590564-4590644 1.0000 80 chrV:8039201-8039281 1.0000 80 chrV:6222497-6222577 1.0000 80 chrX:14164239-14164319 1.0000 80 chrX:1602868-1602948 1.0000 80 chrII:7001605-7001685 1.0000 80 chrII:1520045-1520125 1.0000 80 chrIII:7142473-7142553 1.0000 80 chrIV:1549251-1549331 1.0000 80 chrIII:699009-699089 1.0000 80 chrI:6164306-6164386 1.0000 80 chrIII:4195740-4195820 1.0000 80 chrIV:14822333-14822413 1.0000 80 chrII:2987291-2987371 1.0000 80 chrIV:11026826-11026906 1.0000 80 chrIV:4652638-4652718 1.0000 80 chrI:14720269-14720349 1.0000 80 chrIII:11830682-11830762 1.0000 80 chrIV:12417900-12417980 1.0000 80 chrI:2254262-2254342 1.0000 80 chrI:6094436-6094516 1.0000 80 chrIII:9509848-9509928 1.0000 80 chrIV:7984028-7984108 1.0000 80 chrV:5275814-5275894 1.0000 80 chrIV:6906246-6906326 1.0000 80 chrX:1503867-1503947 1.0000 80 chrV:15547881-15547961 1.0000 80 chrX:8381809-8381889 1.0000 80 chrV:8301100-8301180 1.0000 80 chrIV:2665786-2665866 1.0000 80 chrX:5713640-5713720 1.0000 80 chrX:10145182-10145262 1.0000 80 chrIV:10245717-10245797 1.0000 80 chrV:18573386-18573466 1.0000 80 chrIV:5334712-5334792 1.0000 80 chrV:8247719-8247799 1.0000 80 chrII:5293442-5293522 1.0000 80 chrV:4823737-4823817 1.0000 80 chrII:11167241-11167321 1.0000 80 chrV:8496032-8496112 1.0000 80 chrII:12678292-12678372 1.0000 80 chrII:12994191-12994271 1.0000 80 chrX:14804869-14804949 1.0000 80 chrIII:9104255-9104335 1.0000 80 chrV:6551832-6551912 1.0000 80 chrIV:16388454-16388534 1.0000 80 chrII:10542088-10542168 1.0000 80 chrIII:13016116-13016196 1.0000 80 chrIII:7495080-7495160 1.0000 80 chrIV:5038831-5038911 1.0000 80 chrII:5599794-5599874 1.0000 80 chrIV:16400885-16400965 1.0000 80 chrI:12065821-12065901 1.0000 80 chrIV:2709854-2709934 1.0000 80 chrIII:11792875-11792955 1.0000 80 chrIII:1600806-1600886 1.0000 80 chrIII:835920-836000 1.0000 80 chrII:7003049-7003129 1.0000 80 chrIV:16382362-16382442 1.0000 80 chrII:6888407-6888487 1.0000 80 chrIV:322567-322647 1.0000 80 chrII:8547135-8547215 1.0000 80 chrX:2531300-2531380 1.0000 80 chrII:5701796-5701876 1.0000 80 chrV:20847818-20847898 1.0000 80 chrX:4444260-4444340 1.0000 80 chrI:7083002-7083082 1.0000 80 chrI:1575648-1575728 1.0000 80 chrV:16622065-16622145 1.0000 80 chrX:2528111-2528191 1.0000 80 chrV:12780416-12780496 1.0000 80 chrIII:4378724-4378804 1.0000 80 chrII:13460852-13460932 1.0000 80 chrIII:8449297-8449377 1.0000 80 chrIV:9477673-9477753 1.0000 80 chrIII:9051220-9051300 1.0000 80 chrV:8228749-8228829 1.0000 80 chrIV:2658777-2658857 1.0000 80 chrIV:3524750-3524830 1.0000 80 chrIV:8431720-8431800 1.0000 80 chrII:2860430-2860510 1.0000 80 chrIV:7789714-7789794 1.0000 80 chrX:15773483-15773563 1.0000 80 chrI:2410076-2410156 1.0000 80 chrII:11917806-11917886 1.0000 80 chrV:53453-53533 1.0000 80 chrX:5319395-5319475 1.0000 80 chrX:9024380-9024460 1.0000 80 chrII:5057446-5057526 1.0000 80 chrIII:1424407-1424487 1.0000 80 chrIII:6887798-6887878 1.0000 80 chrX:5354687-5354767 1.0000 80 chrIII:9053992-9054072 1.0000 80 chrIII:6373963-6374043 1.0000 80 chrI:2869896-2869976 1.0000 80 chrIII:1601608-1601688 1.0000 80 chrIV:14225035-14225115 1.0000 80 chrII:8747436-8747516 1.0000 80 chrV:6888981-6889061 1.0000 80 chrV:8349242-8349322 1.0000 80 chrII:7756910-7756990 1.0000 80 chrX:10963847-10963927 1.0000 80 chrV:14354465-14354545 1.0000 80 chrX:13511995-13512075 1.0000 80 chrIV:17281328-17281408 1.0000 80 chrX:7825952-7826032 1.0000 80 chrV:3686072-3686152 1.0000 80 chrV:9786866-9786946 1.0000 80 chrIII:7181997-7182077 1.0000 80 chrII:11759418-11759498 1.0000 80 chrI:7079487-7079567 1.0000 80 chrIV:10933829-10933909 1.0000 80 chrI:11978717-11978797 1.0000 80 chrIV:3552248-3552328 1.0000 80 chrIII:5305853-5305933 1.0000 80 chrX:11252605-11252685 1.0000 80 chrI:7493065-7493145 1.0000 80 chrIV:14838273-14838353 1.0000 80 chrI:2929694-2929774 1.0000 80 chrX:15742039-15742119 1.0000 80 chrII:8075456-8075536 1.0000 80 chrIII:7030540-7030620 1.0000 80 chrI:8245550-8245630 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/worm/inference_raw/MEME/RankLinear2.0_40_nhr-111/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/worm/fasta/RankLinear2.0_40/nhr-111.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.261 C 0.232 G 0.229 T 0.278 Background letter frequencies (from file dataset with add-one prior applied): A 0.261 C 0.232 G 0.229 T 0.278 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GGGTTCGA MEME-1 width = 8 sites = 40 llr = 325 E-value = 3.2e-003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGGTTCGA MEME-1 Description -------------------------------------------------------------------------------- Simplified A 2:32::3a pos.-specific C :::1:a:: probability G 7a81::8: matrix T 2::6a::: bits 2.1 * * 1.9 * ** * 1.7 * ** * 1.5 * ** * Relative 1.3 ** **** Entropy 1.1 ** **** (11.7 bits) 0.8 *** **** 0.6 *** **** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GGGTTCGA consensus A A A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGTTCGA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIV:14838273-14838353 58 1.29e-05 ACCAGGGGAC GGGTTCGA ACCCAGGACA chrX:10963847-10963927 30 1.29e-05 CATTCGACGG GGGTTCGA TTCCCCCCGA chrX:4444260-4444340 51 1.29e-05 CACGCGGCCC GGGTTCGA TTCCCGGCAT chrII:12678292-12678372 71 1.29e-05 GAGAAGTCTG GGGTTCGA TT chrII:5293442-5293522 59 1.29e-05 CATAAGGCCG GGGTTCGA TTCCCCGCAA chrX:5713640-5713720 62 1.29e-05 TTAAGGTCAG GGGTTCGA GTCCCCTAGG chrV:15547881-15547961 5 1.29e-05 AGCA GGGTTCGA ACCTACGCGG chrII:7001605-7001685 71 1.29e-05 GAGAAGTCTG GGGTTCGA TT chrIV:12417900-12417980 37 5.43e-05 GACCACGGCA GGATTCGA ACCTGCAATC chrV:8235430-8235510 39 5.43e-05 GATGAGAGTG GGATTCGA ACCCACGCCC chrV:9318183-9318263 68 5.43e-05 GAGAAGTCTG GGGTTCAA TTCCC chrX:7323742-7323822 60 5.43e-05 GAGAGGGCTG GGGTTCAA TTCCCCATAC chrX:9238879-9238959 34 5.43e-05 GAGAGGGCTG GGGTTCAA TTCCCCATAC chrIV:15932005-15932085 54 5.43e-05 tgcgagaccc gggttcaa ttcccggccg chrII:4565376-4565456 62 5.43e-05 GAGAGGGCTG GGGTTCAA TTCCCCATAC chrX:15742039-15742119 72 6.90e-05 AGGAGGGCGC AGGTTCGA A chrX:10145182-10145262 24 6.90e-05 AGAAGATTGT AGGTTCGA ATCCTGCCGT chrII:1520045-1520125 49 6.90e-05 CTGCCCGCGT AGGTTCGA ATCCTGCTGA chrII:5057446-5057526 12 1.06e-04 GCCGCCAGCA GGGGTCGA ACCTGCGACC chrIV:16400885-16400965 60 1.06e-04 GTGGCGACGC TGGTTCGA TTCCAGCCGC chrIV:16388454-16388534 51 1.06e-04 GTGGCGACGC TGGTTCGA TTCCAGCCGC chrV:1158542-1158622 63 1.06e-04 gtcgatttac gggctcga ttttcgaaat chrX:15146565-15146645 8 1.06e-04 CCAGGCA GGGGTCGA ACCTGCAATC chrIII:7030540-7030620 28 1.50e-04 GCCTCATGCT GGAATCGA ACCAGCGACC chrII:7756910-7756990 70 1.50e-04 TCGGGTCGCA GGATTCAA AGT chrII:12344977-12345057 8 1.50e-04 GACGTCA GGAATCGA ACCTGTGATC chrIV:14576601-14576681 32 1.50e-04 GCGTTCGGGG GGAATCGA ACCCCCGTCG chrX:13283625-13283705 23 1.50e-04 GCCTCATGCT GGAATCGA ACCAGCGACC chrV:2664640-2664720 38 1.50e-04 GCCTCATGCT GGAATCGA ACCAGCGACC chrX:5319395-5319475 1 1.97e-04 . AGGATCGA ACTGGTGACC chrV:6551832-6551912 33 1.97e-04 GATCAGGATG AGATTCGA ACTCACGCGG chrIII:4015575-4015655 51 1.97e-04 GTTCTTGTCG AGGATCGA ATAGGAGATG chrV:53453-53533 73 2.96e-04 ttttggtcgt tggttcaa chrV:16622065-16622145 5 2.96e-04 TAGG GGACTCGA ACCCCTGACC chrX:14804869-14804949 57 2.96e-04 GAGAGGTCCC TGGTTCAA CTCCGGGTGC chrX:6867882-6867962 42 2.96e-04 CGGCACCCAC TGGTTCAA TTCCCTGTGT chrIII:13720358-13720438 58 2.96e-04 GCTGGTCAAA GGGGTCAA AATTCCTCAG chrX:5407382-5407462 42 3.21e-04 GCTCCCGGTG AGGCTCGA ACTCACGACC chrIV:15693453-15693533 53 3.21e-04 GTTTTGAGTC AGGCTCGA CTCCCCCCAC chrIII:1600806-1600886 26 3.47e-04 GAGAGCGCCA TGGGTCGA ACCACTGACC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGTTCGA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:14838273-14838353 1.3e-05 57_[+1]_15 chrX:10963847-10963927 1.3e-05 29_[+1]_43 chrX:4444260-4444340 1.3e-05 50_[+1]_22 chrII:12678292-12678372 1.3e-05 70_[+1]_2 chrII:5293442-5293522 1.3e-05 58_[+1]_14 chrX:5713640-5713720 1.3e-05 61_[+1]_11 chrV:15547881-15547961 1.3e-05 4_[+1]_68 chrII:7001605-7001685 1.3e-05 70_[+1]_2 chrIV:12417900-12417980 5.4e-05 36_[+1]_36 chrV:8235430-8235510 5.4e-05 38_[+1]_34 chrV:9318183-9318263 5.4e-05 67_[+1]_5 chrX:7323742-7323822 5.4e-05 59_[+1]_13 chrX:9238879-9238959 5.4e-05 33_[+1]_39 chrIV:15932005-15932085 5.4e-05 53_[+1]_19 chrII:4565376-4565456 5.4e-05 61_[+1]_11 chrX:15742039-15742119 6.9e-05 71_[+1]_1 chrX:10145182-10145262 6.9e-05 23_[+1]_49 chrII:1520045-1520125 6.9e-05 48_[+1]_24 chrII:5057446-5057526 0.00011 11_[+1]_61 chrIV:16400885-16400965 0.00011 59_[+1]_13 chrIV:16388454-16388534 0.00011 50_[+1]_22 chrV:1158542-1158622 0.00011 62_[+1]_10 chrX:15146565-15146645 0.00011 7_[+1]_65 chrIII:7030540-7030620 0.00015 27_[+1]_45 chrII:7756910-7756990 0.00015 69_[+1]_3 chrII:12344977-12345057 0.00015 7_[+1]_65 chrIV:14576601-14576681 0.00015 31_[+1]_41 chrX:13283625-13283705 0.00015 22_[+1]_50 chrV:2664640-2664720 0.00015 37_[+1]_35 chrX:5319395-5319475 0.0002 [+1]_72 chrV:6551832-6551912 0.0002 32_[+1]_40 chrIII:4015575-4015655 0.0002 50_[+1]_22 chrV:53453-53533 0.0003 72_[+1] chrV:16622065-16622145 0.0003 4_[+1]_68 chrX:14804869-14804949 0.0003 56_[+1]_16 chrX:6867882-6867962 0.0003 41_[+1]_31 chrIII:13720358-13720438 0.0003 57_[+1]_15 chrX:5407382-5407462 0.00032 41_[+1]_31 chrIV:15693453-15693533 0.00032 52_[+1]_20 chrIII:1600806-1600886 0.00035 25_[+1]_47 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGTTCGA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGGTTCGA width=8 seqs=40 chrIV:14838273-14838353 ( 58) GGGTTCGA 1 chrX:10963847-10963927 ( 30) GGGTTCGA 1 chrX:4444260-4444340 ( 51) GGGTTCGA 1 chrII:12678292-12678372 ( 71) GGGTTCGA 1 chrII:5293442-5293522 ( 59) GGGTTCGA 1 chrX:5713640-5713720 ( 62) GGGTTCGA 1 chrV:15547881-15547961 ( 5) GGGTTCGA 1 chrII:7001605-7001685 ( 71) GGGTTCGA 1 chrIV:12417900-12417980 ( 37) GGATTCGA 1 chrV:8235430-8235510 ( 39) GGATTCGA 1 chrV:9318183-9318263 ( 68) GGGTTCAA 1 chrX:7323742-7323822 ( 60) GGGTTCAA 1 chrX:9238879-9238959 ( 34) GGGTTCAA 1 chrIV:15932005-15932085 ( 54) GGGTTCAA 1 chrII:4565376-4565456 ( 62) GGGTTCAA 1 chrX:15742039-15742119 ( 72) AGGTTCGA 1 chrX:10145182-10145262 ( 24) AGGTTCGA 1 chrII:1520045-1520125 ( 49) AGGTTCGA 1 chrII:5057446-5057526 ( 12) GGGGTCGA 1 chrIV:16400885-16400965 ( 60) TGGTTCGA 1 chrIV:16388454-16388534 ( 51) TGGTTCGA 1 chrV:1158542-1158622 ( 63) GGGCTCGA 1 chrX:15146565-15146645 ( 8) GGGGTCGA 1 chrIII:7030540-7030620 ( 28) GGAATCGA 1 chrII:7756910-7756990 ( 70) GGATTCAA 1 chrII:12344977-12345057 ( 8) GGAATCGA 1 chrIV:14576601-14576681 ( 32) GGAATCGA 1 chrX:13283625-13283705 ( 23) GGAATCGA 1 chrV:2664640-2664720 ( 38) GGAATCGA 1 chrX:5319395-5319475 ( 1) AGGATCGA 1 chrV:6551832-6551912 ( 33) AGATTCGA 1 chrIII:4015575-4015655 ( 51) AGGATCGA 1 chrV:53453-53533 ( 73) TGGTTCAA 1 chrV:16622065-16622145 ( 5) GGACTCGA 1 chrX:14804869-14804949 ( 57) TGGTTCAA 1 chrX:6867882-6867962 ( 42) TGGTTCAA 1 chrIII:13720358-13720438 ( 58) GGGGTCAA 1 chrX:5407382-5407462 ( 42) AGGCTCGA 1 chrIV:15693453-15693533 ( 53) AGGCTCGA 1 chrIII:1600806-1600886 ( 26) TGGGTCGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGTTCGA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.08256 E= 3.2e-003 -38 -1197 150 -89 -1197 -1197 212 -1197 -6 -1197 171 -1197 -57 -121 -120 117 -1197 -1197 -1197 185 -1197 211 -1197 -1197 -6 -1197 171 -1197 194 -1197 -1197 -1197 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGTTCGA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 40 E= 3.2e-003 0.200000 0.000000 0.650000 0.150000 0.000000 0.000000 1.000000 0.000000 0.250000 0.000000 0.750000 0.000000 0.175000 0.100000 0.100000 0.625000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.250000 0.000000 0.750000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGTTCGA MEME-1 regular expression -------------------------------------------------------------------------------- [GA]G[GA]TTC[GA]A -------------------------------------------------------------------------------- Time 5.17 secs. ******************************************************************************** ******************************************************************************** MOTIF GGTAGAGC MEME-2 width = 8 sites = 11 llr = 119 E-value = 4.8e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGTAGAGC MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::a:a:: pos.-specific C ::3::::a probability G aa::a:a: matrix T ::7::::: bits 2.1 ** * ** 1.9 ** ***** 1.7 ** ***** 1.5 ** ***** Relative 1.3 ** ***** Entropy 1.1 ******** (15.6 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GGTAGAGC consensus C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTAGAGC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIII:5305853-5305933 68 1.21e-05 ATAGCTCAGT GGTAGAGC GTTGG chrII:12678292-12678372 38 1.21e-05 ATAGCTCAGG GGTAGAGC GCTCGCTTTG chrX:5713640-5713720 29 1.21e-05 TAGCTCAGTT GGTAGAGC GTGAGACTTT chrII:7001605-7001685 38 1.21e-05 GTAGCTCAGG GGTAGAGC GCTCGCTTTG chrV:9318183-9318263 35 1.21e-05 ATAGCTCAGG GGTAGAGC GCTCGCTTCG chrX:7323742-7323822 27 1.21e-05 ATAGCTCAGT GGTAGAGC GCTCCCTTAG chrX:9238879-9238959 1 1.21e-05 . GGTAGAGC GCTCCCTTAG chrII:4565376-4565456 29 1.21e-05 ATAGCTCAGT GGTAGAGC GCTCCCTTAG chrIII:11792875-11792955 41 2.22e-05 CTCACAGCTC GGCAGAGC TCCTGAGAAA chrX:14804869-14804949 24 2.22e-05 ATAGCTCAGT GGCAGAGC ATTCGACTGC chrV:6335358-6335438 56 2.22e-05 ATAGCTCAGT GGCAGAGC ATTCGATTGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTAGAGC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:5305853-5305933 1.2e-05 67_[+2]_5 chrII:12678292-12678372 1.2e-05 37_[+2]_35 chrX:5713640-5713720 1.2e-05 28_[+2]_44 chrII:7001605-7001685 1.2e-05 37_[+2]_35 chrV:9318183-9318263 1.2e-05 34_[+2]_38 chrX:7323742-7323822 1.2e-05 26_[+2]_46 chrX:9238879-9238959 1.2e-05 [+2]_72 chrII:4565376-4565456 1.2e-05 28_[+2]_44 chrIII:11792875-11792955 2.2e-05 40_[+2]_32 chrX:14804869-14804949 2.2e-05 23_[+2]_49 chrV:6335358-6335438 2.2e-05 55_[+2]_17 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTAGAGC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGTAGAGC width=8 seqs=11 chrIII:5305853-5305933 ( 68) GGTAGAGC 1 chrII:12678292-12678372 ( 38) GGTAGAGC 1 chrX:5713640-5713720 ( 29) GGTAGAGC 1 chrII:7001605-7001685 ( 38) GGTAGAGC 1 chrV:9318183-9318263 ( 35) GGTAGAGC 1 chrX:7323742-7323822 ( 27) GGTAGAGC 1 chrX:9238879-9238959 ( 1) GGTAGAGC 1 chrII:4565376-4565456 ( 29) GGTAGAGC 1 chrIII:11792875-11792955 ( 41) GGCAGAGC 1 chrX:14804869-14804949 ( 24) GGCAGAGC 1 chrV:6335358-6335438 ( 56) GGCAGAGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTAGAGC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.0506 E= 4.8e-001 -1010 -1010 212 -1010 -1010 -1010 212 -1010 -1010 23 -1010 139 194 -1010 -1010 -1010 -1010 -1010 212 -1010 194 -1010 -1010 -1010 -1010 -1010 212 -1010 -1010 211 -1010 -1010 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTAGAGC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 11 E= 4.8e-001 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.272727 0.000000 0.727273 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTAGAGC MEME-2 regular expression -------------------------------------------------------------------------------- GG[TC]AGAGC -------------------------------------------------------------------------------- Time 9.06 secs. ******************************************************************************** ******************************************************************************** MOTIF AGTGGTTA MEME-3 width = 8 sites = 11 llr = 117 E-value = 1.3e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif AGTGGTTA MEME-3 Description -------------------------------------------------------------------------------- Simplified A a::::::a pos.-specific C :::::::: probability G :a:aa:1: matrix T ::a::a9: bits 2.1 * ** 1.9 ****** * 1.7 ****** * 1.5 ******** Relative 1.3 ******** Entropy 1.1 ******** (15.4 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AGTGGTTA consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGTGGTTA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrI:11978717-11978797 60 1.76e-05 GTTGTGGTCT AGTGGTTA GGATTTATGG chrV:53453-53533 36 1.76e-05 cgcatggccg agtggtta gtacgtatgc chrX:15773483-15773563 57 1.76e-05 GTCATGTCCG AGTGGTTA AGGAGATTGA chrX:4444260-4444340 15 1.76e-05 CATGTGGTCT AGTGGTTA GGATTCGTGG chrI:12065821-12065901 57 1.76e-05 CTCGTGGTGT AGTGGTTA TCACATCTGT chrIV:16400885-16400965 24 1.76e-05 TGCGTAGTAT AGTGGTTA GTACTCCACG chrIV:16388454-16388534 15 1.76e-05 TGCGTAGTAT AGTGGTTA GTACTCCACG chrII:5293442-5293522 23 1.76e-05 GTTGTGGTCT AGTGGTTA GGATTTATGG chrII:1520045-1520125 3 1.76e-05 CG AGTGGTTA AGGAGATTGA chrIII:11352979-11353059 63 1.76e-05 CTCGTGGTGT AGTGGTTA TCACATCTGT chrIV:15932005-15932085 18 3.21e-05 tcggtagtat agtggtga gtatccgcgt -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGTGGTTA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:11978717-11978797 1.8e-05 59_[+3]_13 chrV:53453-53533 1.8e-05 35_[+3]_37 chrX:15773483-15773563 1.8e-05 56_[+3]_16 chrX:4444260-4444340 1.8e-05 14_[+3]_58 chrI:12065821-12065901 1.8e-05 56_[+3]_16 chrIV:16400885-16400965 1.8e-05 23_[+3]_49 chrIV:16388454-16388534 1.8e-05 14_[+3]_58 chrII:5293442-5293522 1.8e-05 22_[+3]_50 chrII:1520045-1520125 1.8e-05 2_[+3]_70 chrIII:11352979-11353059 1.8e-05 62_[+3]_10 chrIV:15932005-15932085 3.2e-05 17_[+3]_55 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGTGGTTA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AGTGGTTA width=8 seqs=11 chrI:11978717-11978797 ( 60) AGTGGTTA 1 chrV:53453-53533 ( 36) AGTGGTTA 1 chrX:15773483-15773563 ( 57) AGTGGTTA 1 chrX:4444260-4444340 ( 15) AGTGGTTA 1 chrI:12065821-12065901 ( 57) AGTGGTTA 1 chrIV:16400885-16400965 ( 24) AGTGGTTA 1 chrIV:16388454-16388534 ( 15) AGTGGTTA 1 chrII:5293442-5293522 ( 23) AGTGGTTA 1 chrII:1520045-1520125 ( 3) AGTGGTTA 1 chrIII:11352979-11353059 ( 63) AGTGGTTA 1 chrIV:15932005-15932085 ( 18) AGTGGTGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGTGGTTA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.2475 E= 1.3e+000 194 -1010 -1010 -1010 -1010 -1010 212 -1010 -1010 -1010 -1010 185 -1010 -1010 212 -1010 -1010 -1010 212 -1010 -1010 -1010 -1010 185 -1010 -1010 -133 171 194 -1010 -1010 -1010 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGTGGTTA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 11 E= 1.3e+000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.090909 0.909091 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGTGGTTA MEME-3 regular expression -------------------------------------------------------------------------------- AGTGGTTA -------------------------------------------------------------------------------- Time 12.66 secs. ******************************************************************************** ******************************************************************************** MOTIF TAGCTCAG MEME-4 width = 8 sites = 12 llr = 125 E-value = 3.8e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif TAGCTCAG MEME-4 Description -------------------------------------------------------------------------------- Simplified A :a::::a: pos.-specific C :::a2a:: probability G ::a:1::a matrix T a:::8::: bits 2.1 ** * * 1.9 **** *** 1.7 **** *** 1.5 **** *** Relative 1.3 **** *** Entropy 1.1 **** *** (15.1 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TAGCTCAG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAGCTCAG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIII:5305853-5305933 59 1.49e-05 GGCGCCCTTA TAGCTCAG TGGTAGAGCG chrX:14804869-14804949 15 1.49e-05 CACGGGGGTA TAGCTCAG TGGCAGAGCA chrII:12678292-12678372 29 1.49e-05 TATGGGGGTA TAGCTCAG GGGTAGAGCG chrX:5713640-5713720 19 1.49e-05 AGGGCCTCCT TAGCTCAG TTGGTAGAGC chrII:7001605-7001685 29 1.49e-05 GTTACCTGTG TAGCTCAG GGGTAGAGCG chrV:9318183-9318263 26 1.49e-05 CGTGGGGGTA TAGCTCAG GGGTAGAGCG chrV:6335358-6335438 47 1.49e-05 TCGTGGGGTA TAGCTCAG TGGCAGAGCA chrX:7323742-7323822 18 1.49e-05 TCAGGGGGTA TAGCTCAG TGGTAGAGCG chrII:4565376-4565456 20 1.49e-05 GTCGGGGGTA TAGCTCAG TGGTAGAGCG chrX:11252605-11252685 69 2.73e-05 CACAGACTGC TAGCCCAG TCAA chrX:2531300-2531380 68 2.73e-05 GTGGCCGCCA TAGCCCAG TCGGT chrIV:2665786-2665866 18 3.95e-05 GCAGCACGAA TAGCGCAG TGGCTATTGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAGCTCAG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:5305853-5305933 1.5e-05 58_[+4]_14 chrX:14804869-14804949 1.5e-05 14_[+4]_58 chrII:12678292-12678372 1.5e-05 28_[+4]_44 chrX:5713640-5713720 1.5e-05 18_[+4]_54 chrII:7001605-7001685 1.5e-05 28_[+4]_44 chrV:9318183-9318263 1.5e-05 25_[+4]_47 chrV:6335358-6335438 1.5e-05 46_[+4]_26 chrX:7323742-7323822 1.5e-05 17_[+4]_55 chrII:4565376-4565456 1.5e-05 19_[+4]_53 chrX:11252605-11252685 2.7e-05 68_[+4]_4 chrX:2531300-2531380 2.7e-05 67_[+4]_5 chrIV:2665786-2665866 4e-05 17_[+4]_55 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAGCTCAG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TAGCTCAG width=8 seqs=12 chrIII:5305853-5305933 ( 59) TAGCTCAG 1 chrX:14804869-14804949 ( 15) TAGCTCAG 1 chrII:12678292-12678372 ( 29) TAGCTCAG 1 chrX:5713640-5713720 ( 19) TAGCTCAG 1 chrII:7001605-7001685 ( 29) TAGCTCAG 1 chrV:9318183-9318263 ( 26) TAGCTCAG 1 chrV:6335358-6335438 ( 47) TAGCTCAG 1 chrX:7323742-7323822 ( 18) TAGCTCAG 1 chrII:4565376-4565456 ( 20) TAGCTCAG 1 chrX:11252605-11252685 ( 69) TAGCCCAG 1 chrX:2531300-2531380 ( 68) TAGCCCAG 1 chrIV:2665786-2665866 ( 18) TAGCGCAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAGCTCAG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.0174 E= 3.8e+000 -1023 -1023 -1023 185 194 -1023 -1023 -1023 -1023 -1023 212 -1023 -1023 211 -1023 -1023 -1023 -48 -146 143 -1023 211 -1023 -1023 194 -1023 -1023 -1023 -1023 -1023 212 -1023 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAGCTCAG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 12 E= 3.8e+000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.166667 0.083333 0.750000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAGCTCAG MEME-4 regular expression -------------------------------------------------------------------------------- TAGCTCAG -------------------------------------------------------------------------------- Time 16.23 secs. ******************************************************************************** ******************************************************************************** MOTIF ATTTTTCG MEME-5 width = 8 sites = 11 llr = 110 E-value = 4.3e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif ATTTTTCG MEME-5 Description -------------------------------------------------------------------------------- Simplified A a::::::: pos.-specific C ::::::7: probability G :::::::a matrix T :aaaaa3: bits 2.1 * 1.9 ****** * 1.7 ****** * 1.5 ****** * Relative 1.3 ******** Entropy 1.1 ******** (14.5 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel ATTTTTCG consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATTTTTCG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrV:9318183-9318263 10 2.30e-05 TTTATTGCA ATTTTTCG TGGGGGTATA chrV:13090660-13090740 52 2.30e-05 ggctcacact atttttcg cagcctccat chrIII:6123841-6123921 28 2.30e-05 ACTATACCCA ATTTTTCG TTCCTCACCT chrI:14461893-14461973 31 2.30e-05 AAATCATGTA ATTTTTCG AGTTTTCCCC chrII:8187645-8187725 1 2.30e-05 . ATTTTTCG GATCACTGTT chrI:3826669-3826749 28 2.30e-05 Aagatgcgaa atttttcg attttcgtgc chrX:1490063-1490143 20 2.30e-05 caccttccgc atttttcg aaaatcaaaa chrIV:4106632-4106712 19 2.30e-05 CGCGACACTC ATTTTTCG AAAGTTTCTC chrX:2528111-2528191 8 5.06e-05 CACCGAA ATTTTTTG GCGGGCGCGG chrIV:322567-322647 16 5.06e-05 GTTTGAGAAC ATTTTTTG AGAATCTGAA chrII:8441658-8441738 52 5.06e-05 AAGGCTTTTC ATTTTTTG GGTATACTAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATTTTTCG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:9318183-9318263 2.3e-05 9_[+5]_63 chrV:13090660-13090740 2.3e-05 51_[+5]_21 chrIII:6123841-6123921 2.3e-05 27_[+5]_45 chrI:14461893-14461973 2.3e-05 30_[+5]_42 chrII:8187645-8187725 2.3e-05 [+5]_72 chrI:3826669-3826749 2.3e-05 27_[+5]_45 chrX:1490063-1490143 2.3e-05 19_[+5]_53 chrIV:4106632-4106712 2.3e-05 18_[+5]_54 chrX:2528111-2528191 5.1e-05 7_[+5]_65 chrIV:322567-322647 5.1e-05 15_[+5]_57 chrII:8441658-8441738 5.1e-05 51_[+5]_21 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATTTTTCG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ATTTTTCG width=8 seqs=11 chrV:9318183-9318263 ( 10) ATTTTTCG 1 chrV:13090660-13090740 ( 52) ATTTTTCG 1 chrIII:6123841-6123921 ( 28) ATTTTTCG 1 chrI:14461893-14461973 ( 31) ATTTTTCG 1 chrII:8187645-8187725 ( 1) ATTTTTCG 1 chrI:3826669-3826749 ( 28) ATTTTTCG 1 chrX:1490063-1490143 ( 20) ATTTTTCG 1 chrIV:4106632-4106712 ( 19) ATTTTTCG 1 chrX:2528111-2528191 ( 8) ATTTTTTG 1 chrIV:322567-322647 ( 16) ATTTTTTG 1 chrII:8441658-8441738 ( 52) ATTTTTTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATTTTTCG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.0506 E= 4.3e+003 194 -1010 -1010 -1010 -1010 -1010 -1010 185 -1010 -1010 -1010 185 -1010 -1010 -1010 185 -1010 -1010 -1010 185 -1010 -1010 -1010 185 -1010 165 -1010 -3 -1010 -1010 212 -1010 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATTTTTCG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 11 E= 4.3e+003 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.727273 0.000000 0.272727 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATTTTTCG MEME-5 regular expression -------------------------------------------------------------------------------- ATTTTT[CT]G -------------------------------------------------------------------------------- Time 19.84 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:15000462-15000542 5.56e-01 80 chrIII:13204997-13205077 5.13e-01 80 chrII:8746396-8746476 8.58e-01 80 chrIV:16168856-16168936 5.45e-01 80 chrIV:4106632-4106712 5.33e-02 18_[+5(2.30e-05)]_54 chrIV:7043529-7043609 2.56e-01 80 chrI:1150195-1150275 6.94e-01 80 chrIII:8445288-8445368 6.65e-01 80 chrII:9934783-9934863 8.90e-01 80 chrV:19430498-19430578 8.00e-01 80 chrV:728953-729033 6.28e-01 80 chrIV:13389350-13389430 5.53e-01 80 chrV:11225901-11225981 2.54e-01 9_[+5(9.92e-05)]_63 chrI:1157606-1157686 1.95e-01 80 chrX:1490063-1490143 7.24e-02 19_[+5(2.30e-05)]_53 chrII:4565376-4565456 3.00e-06 19_[+4(1.49e-05)]_1_[+2(1.21e-05)]_\ 25_[+1(5.43e-05)]_11 chrIII:1951560-1951640 3.97e-01 80 chrV:2664640-2664720 2.72e-01 80 chrV:727777-727857 5.62e-01 80 chrI:5079716-5079796 3.26e-01 80 chrV:5592060-5592140 4.45e-02 80 chrIV:13893355-13893435 2.80e-01 80 chrIV:13035505-13035585 9.80e-01 80 chrI:3378004-3378084 7.42e-01 80 chrX:15146565-15146645 4.49e-02 80 chrIII:4653704-4653784 8.36e-01 80 chrV:11119632-11119712 1.09e-01 80 chrIV:1727802-1727882 8.54e-01 80 chrI:7617567-7617647 7.23e-01 80 chrIII:13765972-13766052 8.56e-02 80 chrV:103209-103289 7.48e-01 80 chrI:5372426-5372506 6.55e-01 80 chrV:5667476-5667556 5.74e-01 80 chrII:14155819-14155899 3.86e-01 80 chrII:5353825-5353905 6.57e-01 80 chrII:11976064-11976144 1.00e+00 80 chrIV:653245-653325 2.84e-01 80 chrIII:5277936-5278016 2.40e-01 80 chrI:9420748-9420828 6.70e-01 80 chrIII:2811616-2811696 6.81e-01 80 chrX:13283625-13283705 1.98e-01 80 chrIII:11352979-11353059 2.37e-02 62_[+3(1.76e-05)]_10 chrIV:2772451-2772531 7.33e-01 80 chrIV:3260862-3260942 6.28e-01 80 chrII:10657895-10657975 9.95e-01 80 chrIV:15932005-15932085 8.55e-04 17_[+3(3.21e-05)]_28_[+1(5.43e-05)]_\ 19 chrII:4228529-4228609 3.76e-01 80 chrI:3826669-3826749 6.29e-02 27_[+5(2.30e-05)]_45 chrV:2131975-2132055 2.29e-02 80 chrII:1105244-1105324 9.16e-01 80 chrX:9238879-9238959 3.55e-04 [+2(1.21e-05)]_25_[+1(5.43e-05)]_39 chrII:8187645-8187725 2.32e-03 [+5(2.30e-05)]_72 chrIV:2057690-2057770 9.81e-01 80 chrV:1875643-1875723 4.44e-01 80 chrX:10781012-10781092 6.96e-01 80 chrV:12510128-12510208 9.80e-01 80 chrI:10570221-10570301 9.04e-01 80 chrIII:9783462-9783542 8.65e-01 80 chrI:14461893-14461973 1.96e-01 30_[+5(2.30e-05)]_42 chrV:4190302-4190382 2.18e-01 80 chrX:8969875-8969955 7.96e-01 80 chrV:15454420-15454500 2.39e-01 80 chrI:1441990-1442070 3.12e-01 80 chrI:5376792-5376872 1.93e-01 80 chrIV:14576601-14576681 3.85e-01 80 chrII:1150300-1150380 7.94e-01 80 chrIII:6123841-6123921 1.30e-01 27_[+5(2.30e-05)]_45 chrIII:9782108-9782188 9.07e-01 80 chrI:7016157-7016237 5.52e-01 80 chrI:14718921-14719001 7.60e-01 80 chrII:551420-551500 9.10e-01 80 chrI:13547476-13547556 6.96e-01 80 chrIII:11921801-11921881 3.04e-01 80 chrII:3500648-3500728 9.07e-01 80 chrIII:13720358-13720438 8.13e-02 80 chrII:5901808-5901888 2.44e-01 80 chrII:8441658-8441738 9.62e-02 51_[+5(5.06e-05)]_21 chrIV:15693453-15693533 1.27e-01 80 chrIII:1625806-1625886 7.37e-01 80 chrII:12344977-12345057 1.69e-02 80 chrIII:13463944-13464024 2.96e-01 80 chrIII:1419966-1420046 4.61e-01 80 chrIV:13392325-13392405 8.99e-01 80 chrV:14688183-14688263 9.00e-01 80 chrIII:10537237-10537317 3.92e-01 80 chrII:13897423-13897503 9.15e-02 80 chrV:117459-117539 3.75e-01 80 chrI:2878528-2878608 3.74e-01 80 chrII:14351043-14351123 4.79e-01 80 chrIII:13604812-13604892 5.03e-01 80 chrIII:4491460-4491540 4.60e-01 80 chrV:14364943-14365023 3.95e-02 80 chrI:852229-852309 9.14e-01 80 chrII:11376695-11376775 3.20e-01 80 chrV:1158542-1158622 2.48e-01 80 chrV:1154821-1154901 2.23e-01 80 chrX:16930886-16930966 7.75e-01 80 chrX:7323742-7323822 3.40e-06 17_[+4(1.49e-05)]_1_[+2(1.21e-05)]_\ 25_[+1(5.43e-05)]_13 chrIV:9564813-9564893 3.24e-01 80 chrV:12065547-12065627 4.35e-02 80 chrV:14235116-14235196 3.87e-01 80 chrV:6335358-6335438 1.29e-04 46_[+4(1.49e-05)]_1_[+2(2.22e-05)]_\ 17 chrIV:11756067-11756147 4.19e-01 80 chrX:11603290-11603370 5.34e-01 80 chrV:16136773-16136853 8.69e-01 80 chrIII:12598876-12598956 1.42e-01 41_[+5(9.92e-05)]_31 chrIV:1067558-1067638 8.92e-01 80 chrX:14476848-14476928 6.29e-01 80 chrX:8608776-8608856 8.99e-01 80 chrII:10931498-10931578 9.12e-01 80 chrX:6867882-6867962 5.60e-02 80 chrIII:4195531-4195611 3.45e-01 80 chrIII:5506277-5506357 9.81e-01 80 chrII:6587489-6587569 2.81e-01 80 chrV:13090660-13090740 4.35e-02 51_[+5(2.30e-05)]_21 chrV:9734069-9734149 9.19e-01 80 chrV:9318183-9318263 7.15e-08 9_[+5(2.30e-05)]_8_[+4(1.49e-05)]_1_\ [+2(1.21e-05)]_25_[+1(5.43e-05)]_5 chrV:8235430-8235510 1.98e-01 38_[+1(5.43e-05)]_34 chrV:16595131-16595211 7.09e-01 80 chrI:7656720-7656800 2.30e-01 80 chrX:11872331-11872411 8.92e-01 80 chrIII:5230606-5230686 6.17e-01 80 chrIV:991539-991619 4.36e-01 80 chrX:5407382-5407462 4.20e-01 80 chrIII:4015575-4015655 7.58e-02 80 chrIII:13713901-13713981 2.80e-01 80 chrIII:8686033-8686113 6.05e-01 80 chrII:4590564-4590644 9.01e-01 80 chrV:8039201-8039281 4.44e-02 80 chrV:6222497-6222577 1.93e-01 80 chrX:14164239-14164319 9.34e-01 80 chrX:1602868-1602948 9.13e-01 80 chrII:7001605-7001685 1.58e-06 28_[+4(1.49e-05)]_1_[+2(1.21e-05)]_\ 25_[+1(1.29e-05)]_2 chrII:1520045-1520125 4.32e-03 2_[+3(1.76e-05)]_38_[+1(6.90e-05)]_\ 24 chrIII:7142473-7142553 5.13e-01 80 chrIV:1549251-1549331 8.98e-01 80 chrIII:699009-699089 6.20e-01 80 chrI:6164306-6164386 7.56e-01 80 chrIII:4195740-4195820 8.42e-01 80 chrIV:14822333-14822413 4.91e-01 80 chrII:2987291-2987371 9.53e-01 80 chrIV:11026826-11026906 9.41e-01 80 chrIV:4652638-4652718 7.95e-02 80 chrI:14720269-14720349 2.30e-01 80 chrIII:11830682-11830762 7.42e-01 80 chrIV:12417900-12417980 6.38e-02 36_[+1(5.43e-05)]_36 chrI:2254262-2254342 9.32e-01 80 chrI:6094436-6094516 3.51e-01 80 chrIII:9509848-9509928 2.06e-02 80 chrIV:7984028-7984108 4.68e-01 80 chrV:5275814-5275894 4.12e-01 80 chrIV:6906246-6906326 7.37e-01 80 chrX:1503867-1503947 3.76e-01 80 chrV:15547881-15547961 3.33e-02 4_[+1(1.29e-05)]_68 chrX:8381809-8381889 7.11e-01 80 chrV:8301100-8301180 3.03e-01 80 chrIV:2665786-2665866 5.83e-04 17_[+4(3.95e-05)]_55 chrX:5713640-5713720 1.13e-06 18_[+4(1.49e-05)]_2_[+2(1.21e-05)]_\ 25_[+1(1.29e-05)]_11 chrX:10145182-10145262 1.39e-01 23_[+1(6.90e-05)]_49 chrIV:10245717-10245797 9.00e-01 80 chrV:18573386-18573466 3.35e-01 80 chrIV:5334712-5334792 4.44e-02 80 chrV:8247719-8247799 8.41e-01 80 chrII:5293442-5293522 3.14e-04 22_[+3(1.76e-05)]_28_[+1(1.29e-05)]_\ 14 chrV:4823737-4823817 2.70e-01 48_[+5(9.92e-05)]_24 chrII:11167241-11167321 8.46e-01 80 chrV:8496032-8496112 8.10e-01 80 chrII:12678292-12678372 4.56e-06 28_[+4(1.49e-05)]_1_[+2(1.21e-05)]_\ 25_[+1(1.29e-05)]_2 chrII:12994191-12994271 3.10e-01 80 chrX:14804869-14804949 7.79e-05 14_[+4(1.49e-05)]_1_[+2(2.22e-05)]_\ 49 chrIII:9104255-9104335 9.52e-01 80 chrV:6551832-6551912 1.64e-01 80 chrIV:16388454-16388534 5.39e-03 14_[+3(1.76e-05)]_58 chrII:10542088-10542168 9.39e-01 80 chrIII:13016116-13016196 7.33e-01 80 chrIII:7495080-7495160 9.58e-01 80 chrIV:5038831-5038911 9.55e-01 80 chrII:5599794-5599874 5.55e-01 80 chrIV:16400885-16400965 5.39e-03 23_[+3(1.76e-05)]_49 chrI:12065821-12065901 6.20e-02 56_[+3(1.76e-05)]_16 chrIV:2709854-2709934 8.90e-01 80 chrIII:11792875-11792955 4.04e-02 40_[+2(2.22e-05)]_32 chrIII:1600806-1600886 2.78e-01 80 chrIII:835920-836000 5.43e-01 80 chrII:7003049-7003129 9.27e-01 80 chrIV:16382362-16382442 7.79e-01 80 chrII:6888407-6888487 8.37e-01 80 chrIV:322567-322647 2.28e-01 15_[+5(5.06e-05)]_57 chrII:8547135-8547215 1.00e-01 80 chrX:2531300-2531380 5.74e-02 67_[+4(2.73e-05)]_5 chrII:5701796-5701876 9.50e-01 80 chrV:20847818-20847898 6.57e-01 80 chrX:4444260-4444340 1.24e-03 14_[+3(1.76e-05)]_28_[+1(1.29e-05)]_\ 22 chrI:7083002-7083082 7.77e-01 80 chrI:1575648-1575728 9.06e-01 80 chrV:16622065-16622145 2.91e-01 80 chrX:2528111-2528191 9.46e-02 7_[+5(5.06e-05)]_65 chrV:12780416-12780496 9.40e-01 80 chrIII:4378724-4378804 1.22e-01 80 chrII:13460852-13460932 6.63e-01 80 chrIII:8449297-8449377 5.56e-01 80 chrIV:9477673-9477753 6.39e-01 80 chrIII:9051220-9051300 2.18e-01 80 chrV:8228749-8228829 3.99e-02 80 chrIV:2658777-2658857 1.06e-01 80 chrIV:3524750-3524830 1.25e-01 80 chrIV:8431720-8431800 1.36e-01 80 chrII:2860430-2860510 5.86e-01 80 chrIV:7789714-7789794 3.75e-01 80 chrX:15773483-15773563 7.22e-02 56_[+3(1.76e-05)]_16 chrI:2410076-2410156 9.27e-02 80 chrII:11917806-11917886 8.42e-01 80 chrV:53453-53533 5.62e-04 35_[+3(1.76e-05)]_37 chrX:5319395-5319475 5.46e-02 80 chrX:9024380-9024460 8.90e-01 80 chrII:5057446-5057526 8.31e-02 80 chrIII:1424407-1424487 9.96e-01 80 chrIII:6887798-6887878 4.44e-01 80 chrX:5354687-5354767 3.78e-01 80 chrIII:9053992-9054072 3.71e-01 80 chrIII:6373963-6374043 1.40e-01 80 chrI:2869896-2869976 6.34e-01 80 chrIII:1601608-1601688 6.69e-02 80 chrIV:14225035-14225115 7.85e-01 80 chrII:8747436-8747516 8.83e-01 80 chrV:6888981-6889061 1.96e-02 80 chrV:8349242-8349322 2.43e-01 80 chrII:7756910-7756990 2.49e-01 80 chrX:10963847-10963927 8.44e-02 29_[+1(1.29e-05)]_43 chrV:14354465-14354545 7.58e-01 80 chrX:13511995-13512075 8.25e-01 80 chrIV:17281328-17281408 6.97e-01 80 chrX:7825952-7826032 4.39e-01 80 chrV:3686072-3686152 5.34e-01 80 chrV:9786866-9786946 6.25e-01 80 chrIII:7181997-7182077 7.39e-01 80 chrII:11759418-11759498 7.92e-01 80 chrI:7079487-7079567 5.96e-01 80 chrIV:10933829-10933909 6.37e-01 80 chrI:11978717-11978797 1.90e-02 59_[+3(1.76e-05)]_13 chrIV:3552248-3552328 8.32e-01 80 chrIII:5305853-5305933 2.34e-04 58_[+4(1.49e-05)]_1_[+2(1.21e-05)]_\ 5 chrX:11252605-11252685 8.23e-02 68_[+4(2.73e-05)]_4 chrI:7493065-7493145 7.57e-01 80 chrIV:14838273-14838353 6.34e-03 57_[+1(1.29e-05)]_15 chrI:2929694-2929774 3.88e-01 80 chrX:15742039-15742119 2.78e-02 71_[+1(6.90e-05)]_1 chrII:8075456-8075536 4.88e-01 80 chrIII:7030540-7030620 3.58e-01 80 chrI:8245550-8245630 6.66e-01 80 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n10.farnam.hpc.yale.internal ********************************************************************************