******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/worm/fasta/RankLinear2.0_40/nhr-11.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrV:13869707-13869787 1.0000 80 chrII:14592818-14592898 1.0000 80 chrX:11475588-11475668 1.0000 80 chrII:10051608-10051688 1.0000 80 chrX:13379233-13379313 1.0000 80 chrII:13230633-13230713 1.0000 80 chrIII:4487427-4487507 1.0000 80 chrI:10037248-10037328 1.0000 80 chrV:3197090-3197170 1.0000 80 chrII:9778617-9778697 1.0000 80 chrII:5896664-5896744 1.0000 80 chrII:6513-6593 1.0000 80 chrX:5199971-5200051 1.0000 80 chrX:15389998-15390078 1.0000 80 chrV:11262106-11262186 1.0000 80 chrX:8612441-8612521 1.0000 80 chrII:8059713-8059793 1.0000 80 chrII:9838724-9838804 1.0000 80 chrII:10166496-10166576 1.0000 80 chrX:14287952-14288032 1.0000 80 chrIV:1485146-1485226 1.0000 80 chrII:10430584-10430664 1.0000 80 chrIII:9309969-9310049 1.0000 80 chrIV:11965500-11965580 1.0000 80 chrIII:7115109-7115189 1.0000 80 chrIII:5752492-5752572 1.0000 80 chrII:9956106-9956186 1.0000 80 chrV:13937073-13937153 1.0000 80 chrIII:10035970-10036050 1.0000 80 chrX:4490571-4490651 1.0000 80 chrII:9115808-9115888 1.0000 80 chrII:10495014-10495094 1.0000 80 chrV:9984999-9985079 1.0000 80 chrV:4326998-4327078 1.0000 80 chrI:9929563-9929643 1.0000 80 chrX:13394255-13394335 1.0000 80 chrII:9759358-9759438 1.0000 80 chrI:2678151-2678231 1.0000 80 chrIII:6651841-6651921 1.0000 80 chrI:7188366-7188446 1.0000 80 chrIII:8322767-8322847 1.0000 80 chrII:10012693-10012773 1.0000 80 chrI:5587110-5587190 1.0000 80 chrX:12210916-12210996 1.0000 80 chrIV:9725610-9725690 1.0000 80 chrII:11333160-11333240 1.0000 80 chrX:16732371-16732451 1.0000 80 chrII:8157150-8157230 1.0000 80 chrV:6244759-6244839 1.0000 80 chrX:10333436-10333516 1.0000 80 chrIII:6405204-6405284 1.0000 80 chrX:881134-881214 1.0000 80 chrX:12200648-12200728 1.0000 80 chrII:10569619-10569699 1.0000 80 chrV:3870532-3870612 1.0000 80 chrIII:13718698-13718778 1.0000 80 chrV:4870791-4870871 1.0000 80 chrIV:6514828-6514908 1.0000 80 chrV:9055870-9055950 1.0000 80 chrII:7887415-7887495 1.0000 80 chrX:14562426-14562506 1.0000 80 chrV:396510-396590 1.0000 80 chrI:13006499-13006579 1.0000 80 chrI:8144298-8144378 1.0000 80 chrII:4745422-4745502 1.0000 80 chrIII:10820013-10820093 1.0000 80 chrIII:7100135-7100215 1.0000 80 chrI:6436896-6436976 1.0000 80 chrV:11082595-11082675 1.0000 80 chrV:4694788-4694868 1.0000 80 chrX:8090073-8090153 1.0000 80 chrX:7129935-7130015 1.0000 80 chrV:6630958-6631038 1.0000 80 chrIV:16658962-16659042 1.0000 80 chrII:2807899-2807979 1.0000 80 chrX:13351111-13351191 1.0000 80 chrV:13253090-13253170 1.0000 80 chrV:17728908-17728988 1.0000 80 chrII:6940893-6940973 1.0000 80 chrV:9128696-9128776 1.0000 80 chrIII:3104757-3104837 1.0000 80 chrX:13355166-13355246 1.0000 80 chrV:10857546-10857626 1.0000 80 chrX:5743389-5743469 1.0000 80 chrII:10132943-10133023 1.0000 80 chrV:10727826-10727906 1.0000 80 chrII:10550915-10550995 1.0000 80 chrII:9738326-9738406 1.0000 80 chrII:4520293-4520373 1.0000 80 chrII:14590739-14590819 1.0000 80 chrX:16740300-16740380 1.0000 80 chrIII:4283318-4283398 1.0000 80 chrIII:10816204-10816284 1.0000 80 chrIV:6393437-6393517 1.0000 80 chrII:12433128-12433208 1.0000 80 chrIII:6988155-6988235 1.0000 80 chrII:9117884-9117964 1.0000 80 chrI:10089397-10089477 1.0000 80 chrII:11814138-11814218 1.0000 80 chrII:9601838-9601918 1.0000 80 chrX:12206658-12206738 1.0000 80 chrX:6741179-6741259 1.0000 80 chrV:5704681-5704761 1.0000 80 chrIV:14614582-14614662 1.0000 80 chrII:6689304-6689384 1.0000 80 chrIII:13716387-13716467 1.0000 80 chrV:20195499-20195579 1.0000 80 chrV:10719080-10719160 1.0000 80 chrII:160833-160913 1.0000 80 chrI:6198636-6198716 1.0000 80 chrIII:6402582-6402662 1.0000 80 chrV:12991254-12991334 1.0000 80 chrX:7791972-7792052 1.0000 80 chrIV:14606565-14606645 1.0000 80 chrV:20403033-20403113 1.0000 80 chrIV:3026023-3026103 1.0000 80 chrIII:6398419-6398499 1.0000 80 chrIV:9729016-9729096 1.0000 80 chrIV:8526160-8526240 1.0000 80 chrII:7909270-7909350 1.0000 80 chrII:10204781-10204861 1.0000 80 chrII:10016909-10016989 1.0000 80 chrIV:11068479-11068559 1.0000 80 chrII:9602818-9602898 1.0000 80 chrX:4142800-4142880 1.0000 80 chrX:4139966-4140046 1.0000 80 chrII:10950228-10950308 1.0000 80 chrIV:11006534-11006614 1.0000 80 chrII:8559172-8559252 1.0000 80 chrIV:8605356-8605436 1.0000 80 chrX:13555261-13555341 1.0000 80 chrX:12202035-12202115 1.0000 80 chrIV:10641122-10641202 1.0000 80 chrV:11080479-11080559 1.0000 80 chrII:7323500-7323580 1.0000 80 chrI:5997594-5997674 1.0000 80 chrIV:1851535-1851615 1.0000 80 chrI:6294103-6294183 1.0000 80 chrII:9757766-9757846 1.0000 80 chrI:3988699-3988779 1.0000 80 chrV:4794400-4794480 1.0000 80 chrV:6229040-6229120 1.0000 80 chrII:9015011-9015091 1.0000 80 chrIII:3783000-3783080 1.0000 80 chrII:9603023-9603103 1.0000 80 chrI:1691526-1691606 1.0000 80 chrIV:11645393-11645473 1.0000 80 chrIV:14622233-14622313 1.0000 80 chrX:17385211-17385291 1.0000 80 chrX:12388287-12388367 1.0000 80 chrII:8742190-8742270 1.0000 80 chrX:5517410-5517490 1.0000 80 chrIII:10601027-10601107 1.0000 80 chrI:9705579-9705659 1.0000 80 chrII:1996072-1996152 1.0000 80 chrII:7281940-7282020 1.0000 80 chrI:10755265-10755345 1.0000 80 chrI:7658337-7658417 1.0000 80 chrIII:10526194-10526274 1.0000 80 chrIV:10339849-10339929 1.0000 80 chrIV:4971192-4971272 1.0000 80 chrII:5329189-5329269 1.0000 80 chrII:9472151-9472231 1.0000 80 chrV:1951560-1951640 1.0000 80 chrI:2672671-2672751 1.0000 80 chrV:6659920-6660000 1.0000 80 chrI:5599591-5599671 1.0000 80 chrI:8347644-8347724 1.0000 80 chrX:16637973-16638053 1.0000 80 chrIII:5758814-5758894 1.0000 80 chrX:1536301-1536381 1.0000 80 chrV:618121-618201 1.0000 80 chrV:15162893-15162973 1.0000 80 chrII:10236184-10236264 1.0000 80 chrIII:7560047-7560127 1.0000 80 chrX:11193882-11193962 1.0000 80 chrX:8583005-8583085 1.0000 80 chrX:8724007-8724087 1.0000 80 chrI:9100206-9100286 1.0000 80 chrII:9982164-9982244 1.0000 80 chrII:9984953-9985033 1.0000 80 chrX:12669121-12669201 1.0000 80 chrII:5331869-5331949 1.0000 80 chrIV:9948155-9948235 1.0000 80 chrII:14598544-14598624 1.0000 80 chrIV:11352735-11352815 1.0000 80 chrV:18704967-18705047 1.0000 80 chrV:2672765-2672845 1.0000 80 chrII:14044416-14044496 1.0000 80 chrIV:10500112-10500192 1.0000 80 chrII:9937752-9937832 1.0000 80 chrIII:12457075-12457155 1.0000 80 chrII:9130450-9130530 1.0000 80 chrII:6291671-6291751 1.0000 80 chrV:4693396-4693476 1.0000 80 chrX:15378927-15379007 1.0000 80 chrII:10197250-10197330 1.0000 80 chrII:7421078-7421158 1.0000 80 chrV:10868333-10868413 1.0000 80 chrI:8527-8607 1.0000 80 chrV:7432001-7432081 1.0000 80 chrIV:13080328-13080408 1.0000 80 chrV:9047939-9048019 1.0000 80 chrX:14839481-14839561 1.0000 80 chrIV:2734788-2734868 1.0000 80 chrX:3115556-3115636 1.0000 80 chrIV:1483820-1483900 1.0000 80 chrIII:6898656-6898736 1.0000 80 chrI:3352323-3352403 1.0000 80 chrI:9372020-9372100 1.0000 80 chrII:9765659-9765739 1.0000 80 chrII:6941685-6941765 1.0000 80 chrIV:1826818-1826898 1.0000 80 chrV:10874407-10874487 1.0000 80 chrX:13358821-13358901 1.0000 80 chrII:9986874-9986954 1.0000 80 chrII:9996546-9996626 1.0000 80 chrX:12523124-12523204 1.0000 80 chrIII:6144816-6144896 1.0000 80 chrX:14508973-14509053 1.0000 80 chrII:5945170-5945250 1.0000 80 chrII:7057868-7057948 1.0000 80 chrV:9958882-9958962 1.0000 80 chrIV:14274918-14274998 1.0000 80 chrII:9768497-9768577 1.0000 80 chrX:3903933-3904013 1.0000 80 chrII:13469351-13469431 1.0000 80 chrI:9095716-9095796 1.0000 80 chrV:1662552-1662632 1.0000 80 chrV:10174849-10174929 1.0000 80 chrI:7658881-7658961 1.0000 80 chrIV:6879080-6879160 1.0000 80 chrX:12200854-12200934 1.0000 80 chrI:12920719-12920799 1.0000 80 chrV:6204115-6204195 1.0000 80 chrII:9601179-9601259 1.0000 80 chrIII:835636-835716 1.0000 80 chrIV:11385277-11385357 1.0000 80 chrV:11638735-11638815 1.0000 80 chrII:6028678-6028758 1.0000 80 chrV:13763874-13763954 1.0000 80 chrII:7321624-7321704 1.0000 80 chrIV:10481873-10481953 1.0000 80 chrIII:8229654-8229734 1.0000 80 chrI:14855722-14855802 1.0000 80 chrII:8707198-8707278 1.0000 80 chrII:9787536-9787616 1.0000 80 chrX:17043163-17043243 1.0000 80 chrX:10768335-10768415 1.0000 80 chrII:6216787-6216867 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/worm/inference_raw/MEME/RankLinear2.0_40_nhr-11/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/worm/fasta/RankLinear2.0_40/nhr-11.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.304 C 0.195 G 0.194 T 0.307 Background letter frequencies (from file dataset with add-one prior applied): A 0.304 C 0.195 G 0.194 T 0.307 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GARARARV MEME-1 width = 8 sites = 48 llr = 366 E-value = 2.7e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif GARARARV MEME-1 Description -------------------------------------------------------------------------------- Simplified A :a6a6a55 pos.-specific C :::::::3 probability G a:4:4:53 matrix T :::::::: bits 2.4 2.1 * 1.9 * 1.7 ** * * Relative 1.4 ** * * Entropy 1.2 ** * ** (11.0 bits) 0.9 ******* 0.7 ******* 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GAAAAAGA consensus G G AC sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GARARARV MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrII:14598544-14598624 73 3.11e-05 AGACAGTTGT GAGAGAGA chrIII:10526194-10526274 6 3.11e-05 agagt gagagaga gGCTGAAGCT chrV:11082595-11082675 72 3.11e-05 CTCGTCTCTC GAGAAAGA A chrV:9984999-9985079 18 3.11e-05 AGCGCTACGC GAGAAAGA AGAGAGTGAC chrII:9838724-9838804 65 3.11e-05 ATTTGAGTTC GAGAGAGA ATAATAAG chrII:9601179-9601259 48 7.97e-05 GAGGAGGACG GAAAAAGA TACAAAATGA chrII:10197250-10197330 65 7.97e-05 AATTCGCCGC GAAAAAGA AGCGCTAG chrI:5599591-5599671 69 7.97e-05 GCTTCTGTTC GAAAGAGA GAAA chrII:7909270-7909350 41 7.97e-05 AGTGTGAAGT GAAAGAGA TACATAGATA chrI:6198636-6198716 29 7.97e-05 ATGTGGTGTT GAAAAAGA AATGGAAGAA chrV:10727826-10727906 55 7.97e-05 CATGCCTAGA GAAAAAGA AGAAAGAGGA chrII:10569619-10569699 67 7.97e-05 GAGCTCCTGT GAAAAAGA AGATGG chrIV:9725610-9725690 42 7.97e-05 CCACTTATCA GAAAAAGA GGCATGAGAC chrV:4693396-4693476 71 1.19e-04 ACGTGGTTTT GAGAGAGG CA chrIV:14622233-14622313 48 1.19e-04 CAGAACCAGT GAGAGAGG GAAAATTCTG chrIV:16658962-16659042 1 1.19e-04 . GAGAGAGC ACTGGATCAA chrIII:6405204-6405284 2 1.19e-04 A GAGAGAGC AATTGTGTTG chrIV:10481873-10481953 39 1.82e-04 AATGAGGGGG GAAAGAGG GGTTAGAGAA chrIV:1483820-1483900 44 1.82e-04 CGCCATTCGA GAAAAAGC AGAATTGATC chrIV:2734788-2734868 10 1.82e-04 AAATGTCCA GAAAAAGC GAAGAGAGCA chrX:15378927-15379007 19 1.82e-04 ATGATGGGGG GAAAAAGG GAATGAGAAG chrIII:10601027-10601107 54 1.82e-04 CAATAAATGC GAAAGAGC TTGAAGAAGA chrV:11080479-11080559 53 1.82e-04 TGCTCCCGTG GAAAGAGG GAGTTTATGG chrIII:3104757-3104837 4 1.82e-04 AGT GAAAAAGG TACAGGGTAC chrX:11475588-11475668 45 1.82e-04 ACACTTAATT GAAAAAGC AACACTTGGA chrIV:11385277-11385357 73 2.30e-04 AGGATTTTTG GAGAAAAA chrV:10874407-10874487 39 2.30e-04 GTGCAGTTTT GAGAAAAA TGAGAATTAT chrII:9778617-9778697 41 2.30e-04 TGGAATTCAT GAGAAAAA TGTATAATTA chrX:16637973-16638053 69 3.07e-04 ACAGTTTTAT GAAAGAAA AAAG chrI:10755265-10755345 16 3.07e-04 GGTCACCTAC GAAAAAAA AAGAAAGTTC chrI:9705579-9705659 38 3.07e-04 AGATCTTTTC GAAAAAAA AAACTAAAAA chrIII:3783000-3783080 62 3.07e-04 TGTTTTGTGT GAAAAAAA AGTGAAACGG chrV:20403033-20403113 46 3.07e-04 GAGGTTCTTG GAAAAAAA TGGGAATTTT chrI:10089397-10089477 18 3.07e-04 ATATTTTGCA GAAAAAAA TGCGTTGGAG chrIII:7115109-7115189 45 3.07e-04 AGTTTTCTTG GAAAAAAA TCGTTGATTA chrIII:6144816-6144896 32 3.69e-04 GAAGAACATT GAGAGAAC GTTCGATTAG chrV:2672765-2672845 70 3.69e-04 TTACGTGCAA GAGAGAAG AGA chrIV:1851535-1851615 58 3.69e-04 GCGCCCTAAT GAGAAAAG TATTCAATTT chrII:10950228-10950308 47 3.69e-04 TGACAATTGT GAGAGAAG TGAGAGGTTC chrII:2807899-2807979 53 3.69e-04 TGAGCCACCT GAGAGAAC GAACCAACCG chrX:8090073-8090153 10 3.69e-04 GTATGAAAG GAGAAAAC GGTGAGTACA chrII:11333160-11333240 72 3.69e-04 CCTAGCCTCG GAGAAAAC A chrV:11638735-11638815 26 4.66e-04 TGAGATGAGG GAAAAAAG AGAGGGCTCT chrIV:9948155-9948235 14 4.66e-04 GGAAACGGAG GAAAAAAG GACGATGATA chrI:7658337-7658417 2 4.66e-04 A GAAAAAAG AAATTGAAAC chrII:7281940-7282020 61 4.66e-04 ATTAGGCTTA GAAAAAAC TAATTGAATT chrX:16740300-16740380 23 4.66e-04 CTAAGAACCC GAAAAAAC AAATGCGATG chrIV:11068479-11068559 32 5.15e-04 TTCAATGTTG AAGAGAGA TACGTGTGTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GARARARV MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:14598544-14598624 3.1e-05 72_[+1] chrIII:10526194-10526274 3.1e-05 5_[+1]_67 chrV:11082595-11082675 3.1e-05 71_[+1]_1 chrV:9984999-9985079 3.1e-05 17_[+1]_55 chrII:9838724-9838804 3.1e-05 64_[+1]_8 chrII:9601179-9601259 8e-05 47_[+1]_25 chrII:10197250-10197330 8e-05 64_[+1]_8 chrI:5599591-5599671 8e-05 68_[+1]_4 chrII:7909270-7909350 8e-05 40_[+1]_32 chrI:6198636-6198716 8e-05 28_[+1]_44 chrV:10727826-10727906 8e-05 54_[+1]_18 chrII:10569619-10569699 8e-05 66_[+1]_6 chrIV:9725610-9725690 8e-05 41_[+1]_31 chrV:4693396-4693476 0.00012 70_[+1]_2 chrIV:14622233-14622313 0.00012 47_[+1]_25 chrIV:16658962-16659042 0.00012 [+1]_72 chrIII:6405204-6405284 0.00012 1_[+1]_71 chrIV:10481873-10481953 0.00018 38_[+1]_34 chrIV:1483820-1483900 0.00018 43_[+1]_29 chrIV:2734788-2734868 0.00018 9_[+1]_63 chrX:15378927-15379007 0.00018 18_[+1]_54 chrIII:10601027-10601107 0.00018 53_[+1]_19 chrV:11080479-11080559 0.00018 52_[+1]_20 chrIII:3104757-3104837 0.00018 3_[+1]_69 chrX:11475588-11475668 0.00018 44_[+1]_28 chrIV:11385277-11385357 0.00023 72_[+1] chrV:10874407-10874487 0.00023 38_[+1]_34 chrII:9778617-9778697 0.00023 40_[+1]_32 chrX:16637973-16638053 0.00031 68_[+1]_4 chrI:10755265-10755345 0.00031 15_[+1]_57 chrI:9705579-9705659 0.00031 37_[+1]_35 chrIII:3783000-3783080 0.00031 61_[+1]_11 chrV:20403033-20403113 0.00031 45_[+1]_27 chrI:10089397-10089477 0.00031 17_[+1]_55 chrIII:7115109-7115189 0.00031 44_[+1]_28 chrIII:6144816-6144896 0.00037 31_[+1]_41 chrV:2672765-2672845 0.00037 69_[+1]_3 chrIV:1851535-1851615 0.00037 57_[+1]_15 chrII:10950228-10950308 0.00037 46_[+1]_26 chrII:2807899-2807979 0.00037 52_[+1]_20 chrX:8090073-8090153 0.00037 9_[+1]_63 chrII:11333160-11333240 0.00037 71_[+1]_1 chrV:11638735-11638815 0.00047 25_[+1]_47 chrIV:9948155-9948235 0.00047 13_[+1]_59 chrI:7658337-7658417 0.00047 1_[+1]_71 chrII:7281940-7282020 0.00047 60_[+1]_12 chrX:16740300-16740380 0.00047 22_[+1]_50 chrIV:11068479-11068559 0.00052 31_[+1]_41 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GARARARV MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GARARARV width=8 seqs=48 chrII:14598544-14598624 ( 73) GAGAGAGA 1 chrIII:10526194-10526274 ( 6) GAGAGAGA 1 chrV:11082595-11082675 ( 72) GAGAAAGA 1 chrV:9984999-9985079 ( 18) GAGAAAGA 1 chrII:9838724-9838804 ( 65) GAGAGAGA 1 chrII:9601179-9601259 ( 48) GAAAAAGA 1 chrII:10197250-10197330 ( 65) GAAAAAGA 1 chrI:5599591-5599671 ( 69) GAAAGAGA 1 chrII:7909270-7909350 ( 41) GAAAGAGA 1 chrI:6198636-6198716 ( 29) GAAAAAGA 1 chrV:10727826-10727906 ( 55) GAAAAAGA 1 chrII:10569619-10569699 ( 67) GAAAAAGA 1 chrIV:9725610-9725690 ( 42) GAAAAAGA 1 chrV:4693396-4693476 ( 71) GAGAGAGG 1 chrIV:14622233-14622313 ( 48) GAGAGAGG 1 chrIV:16658962-16659042 ( 1) GAGAGAGC 1 chrIII:6405204-6405284 ( 2) GAGAGAGC 1 chrIV:10481873-10481953 ( 39) GAAAGAGG 1 chrIV:1483820-1483900 ( 44) GAAAAAGC 1 chrIV:2734788-2734868 ( 10) GAAAAAGC 1 chrX:15378927-15379007 ( 19) GAAAAAGG 1 chrIII:10601027-10601107 ( 54) GAAAGAGC 1 chrV:11080479-11080559 ( 53) GAAAGAGG 1 chrIII:3104757-3104837 ( 4) GAAAAAGG 1 chrX:11475588-11475668 ( 45) GAAAAAGC 1 chrIV:11385277-11385357 ( 73) GAGAAAAA 1 chrV:10874407-10874487 ( 39) GAGAAAAA 1 chrII:9778617-9778697 ( 41) GAGAAAAA 1 chrX:16637973-16638053 ( 69) GAAAGAAA 1 chrI:10755265-10755345 ( 16) GAAAAAAA 1 chrI:9705579-9705659 ( 38) GAAAAAAA 1 chrIII:3783000-3783080 ( 62) GAAAAAAA 1 chrV:20403033-20403113 ( 46) GAAAAAAA 1 chrI:10089397-10089477 ( 18) GAAAAAAA 1 chrIII:7115109-7115189 ( 45) GAAAAAAA 1 chrIII:6144816-6144896 ( 32) GAGAGAAC 1 chrV:2672765-2672845 ( 70) GAGAGAAG 1 chrIV:1851535-1851615 ( 58) GAGAAAAG 1 chrII:10950228-10950308 ( 47) GAGAGAAG 1 chrII:2807899-2807979 ( 53) GAGAGAAC 1 chrX:8090073-8090153 ( 10) GAGAAAAC 1 chrII:11333160-11333240 ( 72) GAGAAAAC 1 chrV:11638735-11638815 ( 26) GAAAAAAG 1 chrIV:9948155-9948235 ( 14) GAAAAAAG 1 chrI:7658337-7658417 ( 2) GAAAAAAG 1 chrII:7281940-7282020 ( 61) GAAAAAAC 1 chrX:16740300-16740380 ( 23) GAAAAAAC 1 chrIV:11068479-11068559 ( 32) AAGAGAGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GARARARV MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.1543 E= 2.7e+001 -386 -1223 233 -1223 172 -1223 -1223 -1223 94 -1223 110 -1223 172 -1223 -1223 -1223 104 -1223 95 -1223 172 -1223 -1223 -1223 59 -1223 148 -1223 72 36 36 -1223 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GARARARV MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 48 E= 2.7e+001 0.020833 0.000000 0.979167 0.000000 1.000000 0.000000 0.000000 0.000000 0.583333 0.000000 0.416667 0.000000 1.000000 0.000000 0.000000 0.000000 0.625000 0.000000 0.375000 0.000000 1.000000 0.000000 0.000000 0.000000 0.458333 0.000000 0.541667 0.000000 0.500000 0.250000 0.250000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GARARARV MEME-1 regular expression -------------------------------------------------------------------------------- GA[AG]A[AG]A[GA][ACG] -------------------------------------------------------------------------------- Time 8.12 secs. ******************************************************************************** ******************************************************************************** MOTIF TCACGTGA MEME-2 width = 8 sites = 13 llr = 130 E-value = 4.1e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif TCACGTGA MEME-2 Description -------------------------------------------------------------------------------- Simplified A ::a::::8 pos.-specific C :a:a1::1 probability G 2:::9:a2 matrix T 8::::a:: bits 2.4 * * * 2.1 * * * 1.9 * ** * 1.7 ****** Relative 1.4 ****** Entropy 1.2 ******* (14.4 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TCACGTGA consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCACGTGA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIV:6879080-6879160 42 1.25e-05 CACAGGCAAT TCACGTGA AGCAGAGCAT chrII:13469351-13469431 24 1.25e-05 TTCCTCTCGT TCACGTGA ACAAATGTCT chrIII:6898656-6898736 66 1.25e-05 AAACCAAACT TCACGTGA AGTACAT chrI:6294103-6294183 18 1.25e-05 TGCAGAAAAT TCACGTGA ACAACTCCAA chrV:6630958-6631038 22 1.25e-05 GATCAGTTTT TCACGTGA TTGAATTTCT chrV:4694788-4694868 34 1.25e-05 TCCAAAAAAT TCACGTGA ACGAGAGATC chrII:4745422-4745502 38 1.25e-05 CATGTTGGAA TCACGTGA AGCCCGTGAG chrI:7658337-7658417 26 2.03e-05 AAACGAGGGG GCACGTGA CAACAGGGAA chrX:6741179-6741259 64 2.03e-05 CCAAGCTCCT GCACGTGA GGCTTCAAA chrV:618121-618201 26 2.83e-05 GACCACGCCC TCACGTGG TTGGTTTTTT chrIV:16658962-16659042 38 3.63e-05 AAAAAATATG TCACGTGC ACGTGTTGAA chrV:4693396-4693476 59 4.13e-05 TTTACAATTA GCACGTGG TTTTGAGAGA chrII:5329189-5329269 38 5.38e-05 TTTTCATGCT TCACCTGA CTGCTATTTA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCACGTGA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:6879080-6879160 1.2e-05 41_[+2]_31 chrII:13469351-13469431 1.2e-05 23_[+2]_49 chrIII:6898656-6898736 1.2e-05 65_[+2]_7 chrI:6294103-6294183 1.2e-05 17_[+2]_55 chrV:6630958-6631038 1.2e-05 21_[+2]_51 chrV:4694788-4694868 1.2e-05 33_[+2]_39 chrII:4745422-4745502 1.2e-05 37_[+2]_35 chrI:7658337-7658417 2e-05 25_[+2]_47 chrX:6741179-6741259 2e-05 63_[+2]_9 chrV:618121-618201 2.8e-05 25_[+2]_47 chrIV:16658962-16659042 3.6e-05 37_[+2]_35 chrV:4693396-4693476 4.1e-05 58_[+2]_14 chrII:5329189-5329269 5.4e-05 37_[+2]_35 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCACGTGA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TCACGTGA width=8 seqs=13 chrIV:6879080-6879160 ( 42) TCACGTGA 1 chrII:13469351-13469431 ( 24) TCACGTGA 1 chrIII:6898656-6898736 ( 66) TCACGTGA 1 chrI:6294103-6294183 ( 18) TCACGTGA 1 chrV:6630958-6631038 ( 22) TCACGTGA 1 chrV:4694788-4694868 ( 34) TCACGTGA 1 chrII:4745422-4745502 ( 38) TCACGTGA 1 chrI:7658337-7658417 ( 26) GCACGTGA 1 chrX:6741179-6741259 ( 64) GCACGTGA 1 chrV:618121-618201 ( 26) TCACGTGG 1 chrIV:16658962-16659042 ( 38) TCACGTGC 1 chrV:4693396-4693476 ( 59) GCACGTGG 1 chrII:5329189-5329269 ( 38) TCACCTGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCACGTGA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.2095 E= 4.1e+002 -1035 -1035 25 132 -1035 236 -1035 -1035 172 -1035 -1035 -1035 -1035 236 -1035 -1035 -1035 -134 225 -1035 -1035 -1035 -1035 170 -1035 -1035 236 -1035 134 -134 -34 -1035 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCACGTGA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 13 E= 4.1e+002 0.000000 0.000000 0.230769 0.769231 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.076923 0.923077 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.769231 0.076923 0.153846 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCACGTGA MEME-2 regular expression -------------------------------------------------------------------------------- [TG]CACGTGA -------------------------------------------------------------------------------- Time 11.97 secs. ******************************************************************************** ******************************************************************************** MOTIF TTCTCTCT MEME-3 width = 8 sites = 48 llr = 363 E-value = 9.4e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTCTCTCT MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C 2:8:a:73 probability G :2:::2:: matrix T 881a:838 bits 2.4 2.1 * 1.9 * 1.7 ** Relative 1.4 *** Entropy 1.2 * ***** (10.9 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TTCTCTCT consensus TC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTCTCTCT MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:17043163-17043243 63 2.02e-05 TCCAAGTTTC TTCTCTCT TTTCCTCTCC chrII:9984953-9985033 5 2.02e-05 CTCG TTCTCTCT CTCAATCTTT chrIII:5758814-5758894 4 2.02e-05 TCA TTCTCTCT ACTTGGAATG chrI:3988699-3988779 13 2.02e-05 AGCTCGATTC TTCTCTCT TTTCTGCCTC chrIII:10816204-10816284 47 2.02e-05 AAGACATTAT Ttctctct ctctctctct chrII:7887415-7887495 71 2.02e-05 CATTTCGCAA TTCTCTCT AG chrII:10495014-10495094 23 2.02e-05 AAATTTTTGT TTCTCTCT TGGAAGATGA chrIV:1485146-1485226 46 2.02e-05 CTGTGTCTTG TTCTCTCT TTCCATATAA chrII:9986874-9986954 11 3.31e-05 AACCTTCAAT TTCTCTCC ATCTCCGCCT chrIII:6898656-6898736 35 3.31e-05 GTCTTATGAT TTCTCTCC ACAGATATGT chrV:6630958-6631038 36 3.31e-05 GTGATTGAAT TTCTCTCC AATTTCCGAG chrII:9838724-9838804 20 3.31e-05 CACTCTCGTC TTCTCTCC CTCGAATTAA chrI:9095716-9095796 23 7.15e-05 CACGGGTACT CTCTCTCT CCCTTTTTCA chrII:10204781-10204861 57 7.15e-05 CCAACACATA CTCTCTCT GCGATCCCGT chrIV:14606565-14606645 38 7.15e-05 GTGTTTTGAT TTCTCGCT CCTTCTTTTT chrII:6689304-6689384 41 7.15e-05 TCTCTTCACT CTCTCTCT CTTCCTTTAC chrIII:6988155-6988235 11 7.15e-05 ACAAACGAGT CTCTCTCT TTCAAACTCA chrII:10197250-10197330 13 1.03e-04 AATTCATGAG TTCTCTTT GCAAGCGCGC chrIV:11352735-11352815 24 1.03e-04 GTGCCTCTCT TTCTCTTT TTAACACCAC chrII:6513-6593 40 1.03e-04 TTCTCATGAA TTCTCTTT TTGTTCGTTT chrI:1691526-1691606 70 1.11e-04 CGGCGGTTCG TGCTCTCC TTC chrX:4490571-4490651 5 1.11e-04 CTAC TGCTCTCC AAAACGTATC chrV:10174849-10174929 19 1.64e-04 TCTATGAGTC TTCTCTTC GATTTCAGAT chrIV:11645393-11645473 29 1.64e-04 AAAGCATTTT TTCTCTTC GTAACTGGAA chrV:3870532-3870612 72 1.64e-04 CGTCGCCCTC TGCTCGCT T chrI:9100206-9100286 49 1.72e-04 TTACTGTAGT CTCTCGCT CCACATGTTT chrIV:9948155-9948235 56 1.92e-04 TGGAAGAGTG TGCTCTTT GCGGGAGAGC chrII:5329189-5329269 4 1.92e-04 ACC TGCTCTTT AGAAATGTCT chrV:13869707-13869787 11 1.92e-04 ACAAAATAAT TGCTCTTT GGGTGCTACA chrIII:835636-835716 46 2.33e-04 TTTTATTTTG TTCTCGTT TTTTTCCTCA chrIV:6879080-6879160 3 2.33e-04 TC TTCTCGTT CTCAGCTCGA chrX:17385211-17385291 67 2.33e-04 GATCATCACC TTCTCGTT GTTTTT chrII:13230633-13230713 69 2.33e-04 CACCCCACAA TTCTCGTT AACT chrX:15378927-15379007 71 2.65e-04 CCTCTAGGTT TTTTCTCT TA chrIV:6393437-6393517 19 2.65e-04 CTGTGCTCAT TTTTCTCT GTCTCTTTGg chrX:12200648-12200728 50 2.65e-04 CACTGACTCT TTTTCTCT AACGCACAAG chrIII:4487427-4487507 4 2.65e-04 AGT TTTTCTCT CAATGATTTC chrV:396510-396590 47 2.77e-04 GCCTCCCTTT TCCTCTCT CACGCCTTCT chrII:6941685-6941765 72 3.56e-04 CGATTACACA CGCTCGCT C chrII:14044416-14044496 4 3.56e-04 TTA CTCTCTTC GGCAAACTTT chrV:9128696-9128776 25 3.56e-04 TTTCATAATA CGCTCGCT GCCTGCGTCT chrV:4326998-4327078 32 3.56e-04 TTCACACAAT TTGTCTCT CCATCTGAGA chrV:9958882-9958962 5 3.77e-04 TTTA TTTTCTCC CCTTCGAAGC chrX:4139966-4140046 26 4.10e-04 GGAAGGGGTA TCCTCTCC TGATGTCTCA chrX:13351111-13351191 4 4.10e-04 TGG CGCTCTTT GATATAAGCT chrV:618121-618201 49 5.50e-04 TTTTTTCAGC TTTTCTTT ATTTTTGAGA chrX:10333436-10333516 29 5.86e-04 ATGTAGCCAG TTGTCTCC CATTTGCGAG chrII:8707198-8707278 3 6.35e-04 CT TTCTGTCT TTGAAGCACA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTCTCTCT MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:17043163-17043243 2e-05 62_[+3]_10 chrII:9984953-9985033 2e-05 4_[+3]_68 chrIII:5758814-5758894 2e-05 3_[+3]_69 chrI:3988699-3988779 2e-05 12_[+3]_60 chrIII:10816204-10816284 2e-05 46_[+3]_26 chrII:7887415-7887495 2e-05 70_[+3]_2 chrII:10495014-10495094 2e-05 22_[+3]_50 chrIV:1485146-1485226 2e-05 45_[+3]_27 chrII:9986874-9986954 3.3e-05 10_[+3]_62 chrIII:6898656-6898736 3.3e-05 34_[+3]_38 chrV:6630958-6631038 3.3e-05 35_[+3]_37 chrII:9838724-9838804 3.3e-05 19_[+3]_53 chrI:9095716-9095796 7.1e-05 22_[+3]_50 chrII:10204781-10204861 7.1e-05 56_[+3]_16 chrIV:14606565-14606645 7.1e-05 37_[+3]_35 chrII:6689304-6689384 7.1e-05 40_[+3]_32 chrIII:6988155-6988235 7.1e-05 10_[+3]_62 chrII:10197250-10197330 0.0001 12_[+3]_60 chrIV:11352735-11352815 0.0001 23_[+3]_49 chrII:6513-6593 0.0001 39_[+3]_33 chrI:1691526-1691606 0.00011 69_[+3]_3 chrX:4490571-4490651 0.00011 4_[+3]_68 chrV:10174849-10174929 0.00016 18_[+3]_54 chrIV:11645393-11645473 0.00016 28_[+3]_44 chrV:3870532-3870612 0.00016 71_[+3]_1 chrI:9100206-9100286 0.00017 48_[+3]_24 chrIV:9948155-9948235 0.00019 55_[+3]_17 chrII:5329189-5329269 0.00019 3_[+3]_69 chrV:13869707-13869787 0.00019 10_[+3]_62 chrIII:835636-835716 0.00023 45_[+3]_27 chrIV:6879080-6879160 0.00023 2_[+3]_70 chrX:17385211-17385291 0.00023 66_[+3]_6 chrII:13230633-13230713 0.00023 68_[+3]_4 chrX:15378927-15379007 0.00026 70_[+3]_2 chrIV:6393437-6393517 0.00026 18_[+3]_54 chrX:12200648-12200728 0.00026 49_[+3]_23 chrIII:4487427-4487507 0.00026 3_[+3]_69 chrV:396510-396590 0.00028 46_[+3]_26 chrII:6941685-6941765 0.00036 71_[+3]_1 chrII:14044416-14044496 0.00036 3_[+3]_69 chrV:9128696-9128776 0.00036 24_[+3]_48 chrV:4326998-4327078 0.00036 31_[+3]_41 chrV:9958882-9958962 0.00038 4_[+3]_68 chrX:4139966-4140046 0.00041 25_[+3]_47 chrX:13351111-13351191 0.00041 3_[+3]_69 chrV:618121-618201 0.00055 48_[+3]_24 chrX:10333436-10333516 0.00059 28_[+3]_44 chrII:8707198-8707278 0.00064 2_[+3]_70 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTCTCTCT MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTCTCTCT width=8 seqs=48 chrX:17043163-17043243 ( 63) TTCTCTCT 1 chrII:9984953-9985033 ( 5) TTCTCTCT 1 chrIII:5758814-5758894 ( 4) TTCTCTCT 1 chrI:3988699-3988779 ( 13) TTCTCTCT 1 chrIII:10816204-10816284 ( 47) TTCTCTCT 1 chrII:7887415-7887495 ( 71) TTCTCTCT 1 chrII:10495014-10495094 ( 23) TTCTCTCT 1 chrIV:1485146-1485226 ( 46) TTCTCTCT 1 chrII:9986874-9986954 ( 11) TTCTCTCC 1 chrIII:6898656-6898736 ( 35) TTCTCTCC 1 chrV:6630958-6631038 ( 36) TTCTCTCC 1 chrII:9838724-9838804 ( 20) TTCTCTCC 1 chrI:9095716-9095796 ( 23) CTCTCTCT 1 chrII:10204781-10204861 ( 57) CTCTCTCT 1 chrIV:14606565-14606645 ( 38) TTCTCGCT 1 chrII:6689304-6689384 ( 41) CTCTCTCT 1 chrIII:6988155-6988235 ( 11) CTCTCTCT 1 chrII:10197250-10197330 ( 13) TTCTCTTT 1 chrIV:11352735-11352815 ( 24) TTCTCTTT 1 chrII:6513-6593 ( 40) TTCTCTTT 1 chrI:1691526-1691606 ( 70) TGCTCTCC 1 chrX:4490571-4490651 ( 5) TGCTCTCC 1 chrV:10174849-10174929 ( 19) TTCTCTTC 1 chrIV:11645393-11645473 ( 29) TTCTCTTC 1 chrV:3870532-3870612 ( 72) TGCTCGCT 1 chrI:9100206-9100286 ( 49) CTCTCGCT 1 chrIV:9948155-9948235 ( 56) TGCTCTTT 1 chrII:5329189-5329269 ( 4) TGCTCTTT 1 chrV:13869707-13869787 ( 11) TGCTCTTT 1 chrIII:835636-835716 ( 46) TTCTCGTT 1 chrIV:6879080-6879160 ( 3) TTCTCGTT 1 chrX:17385211-17385291 ( 67) TTCTCGTT 1 chrII:13230633-13230713 ( 69) TTCTCGTT 1 chrX:15378927-15379007 ( 71) TTTTCTCT 1 chrIV:6393437-6393517 ( 19) TTTTCTCT 1 chrX:12200648-12200728 ( 50) TTTTCTCT 1 chrIII:4487427-4487507 ( 4) TTTTCTCT 1 chrV:396510-396590 ( 47) TCCTCTCT 1 chrII:6941685-6941765 ( 72) CGCTCGCT 1 chrII:14044416-14044496 ( 4) CTCTCTTC 1 chrV:9128696-9128776 ( 25) CGCTCGCT 1 chrV:4326998-4327078 ( 32) TTGTCTCT 1 chrV:9958882-9958962 ( 5) TTTTCTCC 1 chrX:4139966-4140046 ( 26) TCCTCTCC 1 chrX:13351111-13351191 ( 4) CGCTCTTT 1 chrV:618121-618201 ( 49) TTTTCTTT 1 chrX:10333436-10333516 ( 29) TTGTCTCC 1 chrII:8707198-8707278 ( 3) TTCTGTCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTCTCTCT MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.66841 E= 9.4e+001 -1223 -5 -1223 140 -1223 -222 -5 133 -1223 210 -222 -130 -1223 -1223 -1223 170 -1223 233 -322 -1223 -1223 -1223 -5 140 -1223 182 -1223 2 -1223 36 -1223 129 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTCTCTCT MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 48 E= 9.4e+001 0.000000 0.187500 0.000000 0.812500 0.000000 0.041667 0.187500 0.770833 0.000000 0.833333 0.041667 0.125000 0.000000 0.000000 0.000000 1.000000 0.000000 0.979167 0.020833 0.000000 0.000000 0.000000 0.187500 0.812500 0.000000 0.687500 0.000000 0.312500 0.000000 0.250000 0.000000 0.750000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTCTCTCT MEME-3 regular expression -------------------------------------------------------------------------------- TTCTCT[CT][TC] -------------------------------------------------------------------------------- Time 15.60 secs. ******************************************************************************** ******************************************************************************** MOTIF GAGACGCA MEME-4 width = 8 sites = 5 llr = 59 E-value = 1.0e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif GAGACGCA MEME-4 Description -------------------------------------------------------------------------------- Simplified A :a:a:::a pos.-specific C ::::a:a: probability G a:a::a:: matrix T :::::::: bits 2.4 * * *** 2.1 * * *** 1.9 * * *** 1.7 ******** Relative 1.4 ******** Entropy 1.2 ******** (17.0 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GAGACGCA consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGACGCA MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrII:9937752-9937832 11 7.80e-06 ACTTTTTATA GAGACGCA GACAGAAAAT chrIII:5758814-5758894 58 7.80e-06 GTTGAGCCGA GAGACGCA GGCAAACCGA chrII:2807899-2807979 73 7.80e-06 ACCAACCGAA GAGACGCA chrI:7188366-7188446 69 7.80e-06 GTGTTGAGAA GAGACGCA AAGA chrI:2678151-2678231 26 7.80e-06 GATATTTTCT GAGACGCA TCGGTGTGTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGACGCA MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:9937752-9937832 7.8e-06 10_[+4]_62 chrIII:5758814-5758894 7.8e-06 57_[+4]_15 chrII:2807899-2807979 7.8e-06 72_[+4] chrI:7188366-7188446 7.8e-06 68_[+4]_4 chrI:2678151-2678231 7.8e-06 25_[+4]_47 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGACGCA MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GAGACGCA width=8 seqs=5 chrII:9937752-9937832 ( 11) GAGACGCA 1 chrIII:5758814-5758894 ( 58) GAGACGCA 1 chrII:2807899-2807979 ( 73) GAGACGCA 1 chrI:7188366-7188446 ( 69) GAGACGCA 1 chrI:2678151-2678231 ( 26) GAGACGCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGACGCA MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.2675 E= 1.0e+004 -897 -897 236 -897 172 -897 -897 -897 -897 -897 236 -897 172 -897 -897 -897 -897 236 -897 -897 -897 -897 236 -897 -897 236 -897 -897 172 -897 -897 -897 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGACGCA MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 1.0e+004 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGACGCA MEME-4 regular expression -------------------------------------------------------------------------------- GAGACGCA -------------------------------------------------------------------------------- Time 19.30 secs. ******************************************************************************** ******************************************************************************** MOTIF TCYARGAA MEME-5 width = 8 sites = 41 llr = 315 E-value = 6.2e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif TCYARGAA MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::572aa pos.-specific C :a5::::: probability G :::238:: matrix T a:52:::: bits 2.4 * 2.1 * 1.9 * 1.7 ** ** Relative 1.4 ** *** Entropy 1.2 ** *** (11.1 bits) 0.9 ** **** 0.7 *** **** 0.5 *** **** 0.2 ******** 0.0 -------- Multilevel TCTAAGAA consensus CGG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCYARGAA MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrII:12433128-12433208 2 1.93e-05 C TCCAAGAA AATCATTTTC chrX:14562426-14562506 51 1.93e-05 GTTTCTGCTT TCCAAGAA ACGAATCATC chrV:9055870-9055950 59 1.93e-05 GCTGGAAGTT TCCAAGAA CCACTGGATA chrII:9115808-9115888 29 1.93e-05 TCAGCGTAGT TCCAAGAA CATCGTTAAC chrII:160833-160913 43 3.17e-05 CCAATGGTTT TCCAGGAA AAGCGGCATC chrX:16740300-16740380 12 7.45e-05 GTAATGCTAT TCTAAGAA CCCGAAAAAA chrV:6630958-6631038 48 7.45e-05 CTCTCCAATT TCCGAGAA TATTTTATGA chrV:11082595-11082675 31 7.45e-05 GCAGAGCGAT TCCGAGAA TCGCAACGTT chrI:8144298-8144378 16 7.45e-05 GTGAGCGAAT TCCGAGAA ATAATTCTTC chrV:6244759-6244839 32 7.45e-05 TCTCTCAATT TCTAAGAA CCTCAAAAAA chrIII:6651841-6651921 47 7.45e-05 TATTATAGGT TCTAAGAA AGTGTACCGC chrIII:5752492-5752572 51 7.45e-05 ATATCCCGTT TCCGAGAA TAGATTTTCA chrIII:4487427-4487507 59 7.45e-05 TAAATGGAAT TCTAAGAA TTTGGTGGAT chrX:12200854-12200934 47 1.02e-04 CAAATCTATT TCTAGGAA ACGGGAAGAA chrII:8559172-8559252 60 1.02e-04 ACTTAAAAAC TCTAGGAA TTATTCTTTA chrV:20403033-20403113 63 1.02e-04 ATGGGAATTT TCCGGGAA TTTGGGATAT chrX:13394255-13394335 52 1.02e-04 GGGAAATGTT TCTAGGAA ATAAGAGTGT chrX:13379233-13379313 33 1.02e-04 AAAAATGATT TCTAGGAA AATGAGATTT chrII:6291671-6291751 63 1.21e-04 TGCTCCAATT TCTGAGAA AATCAAAAAT chrX:5743389-5743469 37 1.21e-04 GAGCGCAATT TCTGAGAA ACGGTGGATA chrII:9937752-9937832 61 1.53e-04 TAACTGAAGG TCTGGGAA ACACGTGGTT chrX:3115556-3115636 21 1.66e-04 TGTTTTGATT TCCTGGAA ATGAACTAAC chrI:10755265-10755345 69 1.66e-04 GAATTTCATT TCCTGGAA TAGT chrI:1691526-1691606 14 1.96e-04 CTCTGGGGGT TCTTAGAA ATGTGTGTCT chrIII:13716387-13716467 56 1.96e-04 ATTCTGGAAT TCTTAGAA TTTTCTCAGT chrII:10132943-10133023 61 1.96e-04 GTTTTCAGAT TCTTAGAA ACATGTGCTC chrX:8612441-8612521 57 1.96e-04 ACTTCAGTTT TCTTAGAA TAATCTCACG chrI:6436896-6436976 14 2.16e-04 GACTCAATAT TCTTGGAA TCAATCAACT chrV:13937073-13937153 40 2.16e-04 TATATTGTTT TCTTGGAA TTGGAAGTTA chrI:14855722-14855802 33 2.59e-04 ATTGAAAAAT TCCAAAAA TACTCCAAAA chrI:8347644-8347724 45 2.59e-04 TCACTGAAAT TCCCAGAA ACCTATATGG chrI:6294103-6294183 31 2.59e-04 CGTGAACAAC TCCAAAAA TCGTACGATC chrV:4694788-4694868 24 2.59e-04 AGGATAGAAT TCCAAAAA ATTCACGTGA chrII:9759358-9759438 3 2.59e-04 AT TCCAAAAA CGAATTATAT chrII:9602818-9602898 41 2.86e-04 CAAGTTGCAT TCCAGAAA TTCATTGTTT chrX:4490571-4490651 46 2.86e-04 ATGCTCTAGC TCCAGAAA ACAAAGTCAG chrX:12210916-12210996 53 3.73e-04 TCACATAAAT TCTCAGAA TCTGGATATT chrI:3352323-3352403 72 4.28e-04 AAATAAGAAT TCTAGAAA A chrII:9787536-9787616 43 4.88e-04 TGCCGAGAAA TCAAAGAA AACGAAAAGA chrIV:8605356-8605436 42 4.88e-04 TCATTCTAGT TCTGAAAA ATCAACGAAA chrV:4870791-4870871 54 4.88e-04 AATTTTGATT TCAAAGAA ACAAGTATAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCYARGAA MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:12433128-12433208 1.9e-05 1_[+5]_71 chrX:14562426-14562506 1.9e-05 50_[+5]_22 chrV:9055870-9055950 1.9e-05 58_[+5]_14 chrII:9115808-9115888 1.9e-05 28_[+5]_44 chrII:160833-160913 3.2e-05 42_[+5]_30 chrX:16740300-16740380 7.4e-05 11_[+5]_61 chrV:6630958-6631038 7.4e-05 47_[+5]_25 chrV:11082595-11082675 7.4e-05 30_[+5]_42 chrI:8144298-8144378 7.4e-05 15_[+5]_57 chrV:6244759-6244839 7.4e-05 31_[+5]_41 chrIII:6651841-6651921 7.4e-05 46_[+5]_26 chrIII:5752492-5752572 7.4e-05 50_[+5]_22 chrIII:4487427-4487507 7.4e-05 58_[+5]_14 chrX:12200854-12200934 0.0001 46_[+5]_26 chrII:8559172-8559252 0.0001 59_[+5]_13 chrV:20403033-20403113 0.0001 62_[+5]_10 chrX:13394255-13394335 0.0001 51_[+5]_21 chrX:13379233-13379313 0.0001 32_[+5]_40 chrII:6291671-6291751 0.00012 62_[+5]_10 chrX:5743389-5743469 0.00012 36_[+5]_36 chrII:9937752-9937832 0.00015 60_[+5]_12 chrX:3115556-3115636 0.00017 20_[+5]_52 chrI:10755265-10755345 0.00017 68_[+5]_4 chrI:1691526-1691606 0.0002 13_[+5]_59 chrIII:13716387-13716467 0.0002 55_[+5]_17 chrII:10132943-10133023 0.0002 60_[+5]_12 chrX:8612441-8612521 0.0002 56_[+5]_16 chrI:6436896-6436976 0.00022 13_[+5]_59 chrV:13937073-13937153 0.00022 39_[+5]_33 chrI:14855722-14855802 0.00026 32_[+5]_40 chrI:8347644-8347724 0.00026 44_[+5]_28 chrI:6294103-6294183 0.00026 30_[+5]_42 chrV:4694788-4694868 0.00026 23_[+5]_49 chrII:9759358-9759438 0.00026 2_[+5]_70 chrII:9602818-9602898 0.00029 40_[+5]_32 chrX:4490571-4490651 0.00029 45_[+5]_27 chrX:12210916-12210996 0.00037 52_[+5]_20 chrI:3352323-3352403 0.00043 71_[+5]_1 chrII:9787536-9787616 0.00049 42_[+5]_30 chrIV:8605356-8605436 0.00049 41_[+5]_31 chrV:4870791-4870871 0.00049 53_[+5]_19 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCYARGAA MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TCYARGAA width=8 seqs=41 chrII:12433128-12433208 ( 2) TCCAAGAA 1 chrX:14562426-14562506 ( 51) TCCAAGAA 1 chrV:9055870-9055950 ( 59) TCCAAGAA 1 chrII:9115808-9115888 ( 29) TCCAAGAA 1 chrII:160833-160913 ( 43) TCCAGGAA 1 chrX:16740300-16740380 ( 12) TCTAAGAA 1 chrV:6630958-6631038 ( 48) TCCGAGAA 1 chrV:11082595-11082675 ( 31) TCCGAGAA 1 chrI:8144298-8144378 ( 16) TCCGAGAA 1 chrV:6244759-6244839 ( 32) TCTAAGAA 1 chrIII:6651841-6651921 ( 47) TCTAAGAA 1 chrIII:5752492-5752572 ( 51) TCCGAGAA 1 chrIII:4487427-4487507 ( 59) TCTAAGAA 1 chrX:12200854-12200934 ( 47) TCTAGGAA 1 chrII:8559172-8559252 ( 60) TCTAGGAA 1 chrV:20403033-20403113 ( 63) TCCGGGAA 1 chrX:13394255-13394335 ( 52) TCTAGGAA 1 chrX:13379233-13379313 ( 33) TCTAGGAA 1 chrII:6291671-6291751 ( 63) TCTGAGAA 1 chrX:5743389-5743469 ( 37) TCTGAGAA 1 chrII:9937752-9937832 ( 61) TCTGGGAA 1 chrX:3115556-3115636 ( 21) TCCTGGAA 1 chrI:10755265-10755345 ( 69) TCCTGGAA 1 chrI:1691526-1691606 ( 14) TCTTAGAA 1 chrIII:13716387-13716467 ( 56) TCTTAGAA 1 chrII:10132943-10133023 ( 61) TCTTAGAA 1 chrX:8612441-8612521 ( 57) TCTTAGAA 1 chrI:6436896-6436976 ( 14) TCTTGGAA 1 chrV:13937073-13937153 ( 40) TCTTGGAA 1 chrI:14855722-14855802 ( 33) TCCAAAAA 1 chrI:8347644-8347724 ( 45) TCCCAGAA 1 chrI:6294103-6294183 ( 31) TCCAAAAA 1 chrV:4694788-4694868 ( 24) TCCAAAAA 1 chrII:9759358-9759438 ( 3) TCCAAAAA 1 chrII:9602818-9602898 ( 41) TCCAGAAA 1 chrX:4490571-4490651 ( 46) TCCAGAAA 1 chrX:12210916-12210996 ( 53) TCTCAGAA 1 chrI:3352323-3352403 ( 72) TCTAGAAA 1 chrII:9787536-9787616 ( 43) TCAAAGAA 1 chrIV:8605356-8605436 ( 42) TCTGAAAA 1 chrV:4870791-4870871 ( 54) TCAAAGAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCYARGAA MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.07398 E= 6.2e+004 -1200 -1200 -1200 170 -1200 236 -1200 -1200 -264 125 -1200 67 82 -199 18 -66 112 -1200 81 -1200 -64 -1200 205 -1200 172 -1200 -1200 -1200 172 -1200 -1200 -1200 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCYARGAA MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 41 E= 6.2e+004 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.048780 0.463415 0.000000 0.487805 0.536585 0.048780 0.219512 0.195122 0.658537 0.000000 0.341463 0.000000 0.195122 0.000000 0.804878 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCYARGAA MEME-5 regular expression -------------------------------------------------------------------------------- TC[TC][AG][AG]GAA -------------------------------------------------------------------------------- Time 23.14 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:13869707-13869787 4.63e-02 80 chrII:14592818-14592898 1.12e-01 80 chrX:11475588-11475668 1.54e-01 80 chrII:10051608-10051688 9.53e-01 80 chrX:13379233-13379313 1.32e-01 80 chrII:13230633-13230713 8.39e-02 80 chrIII:4487427-4487507 3.73e-02 58_[+5(7.45e-05)]_14 chrI:10037248-10037328 1.05e-01 80 chrV:3197090-3197170 6.29e-01 80 chrII:9778617-9778697 8.79e-02 80 chrII:5896664-5896744 9.01e-01 80 chrII:6513-6593 1.07e-01 80 chrX:5199971-5200051 6.43e-01 80 chrX:15389998-15390078 4.09e-01 80 chrV:11262106-11262186 2.37e-01 80 chrX:8612441-8612521 1.95e-01 80 chrII:8059713-8059793 9.60e-01 80 chrII:9838724-9838804 4.09e-03 19_[+3(3.31e-05)]_37_[+1(3.11e-05)]_\ 8 chrII:10166496-10166576 7.13e-01 80 chrX:14287952-14288032 1.73e-01 80 chrIV:1485146-1485226 1.86e-01 45_[+3(2.02e-05)]_27 chrII:10430584-10430664 7.59e-01 80 chrIII:9309969-9310049 6.82e-01 80 chrIV:11965500-11965580 8.64e-01 80 chrIII:7115109-7115189 5.47e-02 80 chrIII:5752492-5752572 1.34e-01 50_[+5(7.45e-05)]_22 chrII:9956106-9956186 8.42e-01 80 chrV:13937073-13937153 1.77e-01 80 chrIII:10035970-10036050 2.88e-01 80 chrX:4490571-4490651 7.38e-03 80 chrII:9115808-9115888 9.36e-02 28_[+5(1.93e-05)]_44 chrII:10495014-10495094 6.16e-03 22_[+3(2.02e-05)]_50 chrV:9984999-9985079 2.37e-03 17_[+1(3.11e-05)]_55 chrV:4326998-4327078 4.59e-02 80 chrI:9929563-9929643 5.32e-01 80 chrX:13394255-13394335 9.31e-02 80 chrII:9759358-9759438 2.83e-01 80 chrI:2678151-2678231 3.04e-03 25_[+4(7.80e-06)]_47 chrIII:6651841-6651921 1.04e-01 46_[+5(7.45e-05)]_26 chrI:7188366-7188446 1.04e-02 68_[+4(7.80e-06)]_4 chrIII:8322767-8322847 3.45e-01 80 chrII:10012693-10012773 1.33e-01 80 chrI:5587110-5587190 6.73e-01 80 chrX:12210916-12210996 5.89e-02 80 chrIV:9725610-9725690 1.03e-02 41_[+1(7.97e-05)]_31 chrII:11333160-11333240 2.74e-01 80 chrX:16732371-16732451 4.65e-02 80 chrII:8157150-8157230 1.66e-01 80 chrV:6244759-6244839 1.10e-02 31_[+5(7.45e-05)]_41 chrX:10333436-10333516 4.93e-01 80 chrIII:6405204-6405284 1.87e-01 80 chrX:881134-881214 1.87e-01 80 chrX:12200648-12200728 2.34e-02 80 chrII:10569619-10569699 3.98e-02 66_[+1(7.97e-05)]_6 chrV:3870532-3870612 4.85e-02 80 chrIII:13718698-13718778 2.13e-01 80 chrV:4870791-4870871 1.29e-01 80 chrIV:6514828-6514908 7.08e-01 80 chrV:9055870-9055950 7.23e-02 58_[+5(1.93e-05)]_14 chrII:7887415-7887495 1.94e-02 50_[+3(2.02e-05)]_12_[+3(2.02e-05)]_\ 2 chrX:14562426-14562506 1.44e-02 50_[+5(1.93e-05)]_22 chrV:396510-396590 2.15e-01 80 chrI:13006499-13006579 1.32e-01 80 chrI:8144298-8144378 1.00e-01 15_[+5(7.45e-05)]_57 chrII:4745422-4745502 2.32e-03 37_[+2(1.25e-05)]_35 chrIII:10820013-10820093 7.03e-01 80 chrIII:7100135-7100215 1.47e-01 80 chrI:6436896-6436976 1.80e-01 80 chrV:11082595-11082675 5.19e-05 30_[+5(7.45e-05)]_33_[+1(3.11e-05)]_\ 1 chrV:4694788-4694868 8.80e-04 33_[+2(1.25e-05)]_39 chrX:8090073-8090153 3.46e-02 80 chrX:7129935-7130015 8.60e-01 80 chrV:6630958-6631038 8.15e-06 21_[+2(1.25e-05)]_6_[+3(3.31e-05)]_\ 4_[+5(7.45e-05)]_25 chrIV:16658962-16659042 2.59e-03 37_[+2(3.63e-05)]_35 chrII:2807899-2807979 5.35e-04 72_[+4(7.80e-06)] chrX:13351111-13351191 5.47e-01 80 chrV:13253090-13253170 5.10e-01 80 chrV:17728908-17728988 3.70e-01 80 chrII:6940893-6940973 9.92e-01 80 chrV:9128696-9128776 3.55e-01 80 chrIII:3104757-3104837 2.56e-01 80 chrX:13355166-13355246 2.53e-01 80 chrV:10857546-10857626 2.76e-01 80 chrX:5743389-5743469 1.27e-01 80 chrII:10132943-10133023 1.62e-02 8_[+2(8.79e-05)]_64 chrV:10727826-10727906 1.56e-01 54_[+1(7.97e-05)]_18 chrII:10550915-10550995 1.38e-01 80 chrII:9738326-9738406 7.10e-02 80 chrII:4520293-4520373 9.63e-01 80 chrII:14590739-14590819 2.99e-01 80 chrX:16740300-16740380 2.83e-02 11_[+5(7.45e-05)]_61 chrIII:4283318-4283398 9.38e-02 80 chrIII:10816204-10816284 6.83e-02 46_[+3(2.02e-05)]_[+3(7.15e-05)]_18 chrIV:6393437-6393517 3.26e-01 80 chrII:12433128-12433208 9.69e-03 1_[+5(1.93e-05)]_71 chrIII:6988155-6988235 7.39e-02 10_[+3(7.15e-05)]_62 chrII:9117884-9117964 6.57e-01 80 chrI:10089397-10089477 1.12e-01 80 chrII:11814138-11814218 2.31e-01 80 chrII:9601838-9601918 4.76e-01 80 chrX:12206658-12206738 6.85e-01 80 chrX:6741179-6741259 1.80e-03 63_[+2(2.03e-05)]_9 chrV:5704681-5704761 3.08e-01 80 chrIV:14614582-14614662 5.29e-01 80 chrII:6689304-6689384 6.68e-03 38_[+3(7.15e-05)]_34 chrIII:13716387-13716467 2.70e-01 80 chrV:20195499-20195579 3.34e-01 80 chrV:10719080-10719160 7.66e-02 80 chrII:160833-160913 2.69e-02 42_[+5(3.17e-05)]_30 chrI:6198636-6198716 2.43e-01 28_[+1(7.97e-05)]_44 chrIII:6402582-6402662 7.47e-01 80 chrV:12991254-12991334 2.40e-01 80 chrX:7791972-7792052 7.71e-01 80 chrIV:14606565-14606645 2.08e-01 37_[+3(7.15e-05)]_35 chrV:20403033-20403113 1.92e-02 80 chrIV:3026023-3026103 5.35e-01 80 chrIII:6398419-6398499 4.60e-01 80 chrIV:9729016-9729096 5.12e-01 80 chrIV:8526160-8526240 1.76e-01 80 chrII:7909270-7909350 2.42e-02 40_[+1(7.97e-05)]_32 chrII:10204781-10204861 1.15e-01 56_[+3(7.15e-05)]_16 chrII:10016909-10016989 5.54e-01 80 chrIV:11068479-11068559 6.18e-02 80 chrII:9602818-9602898 2.01e-01 80 chrX:4142800-4142880 3.74e-01 80 chrX:4139966-4140046 6.15e-02 80 chrII:10950228-10950308 1.50e-01 80 chrIV:11006534-11006614 6.18e-01 80 chrII:8559172-8559252 2.46e-01 80 chrIV:8605356-8605436 1.10e-01 80 chrX:13555261-13555341 4.91e-02 80 chrX:12202035-12202115 1.60e-01 80 chrIV:10641122-10641202 2.43e-01 80 chrV:11080479-11080559 1.31e-02 80 chrII:7323500-7323580 3.63e-01 80 chrI:5997594-5997674 3.01e-02 80 chrIV:1851535-1851615 7.55e-02 80 chrI:6294103-6294183 2.74e-03 17_[+2(1.25e-05)]_55 chrII:9757766-9757846 7.42e-01 80 chrI:3988699-3988779 1.24e-02 12_[+3(2.02e-05)]_60 chrV:4794400-4794480 1.46e-01 80 chrV:6229040-6229120 8.06e-02 80 chrII:9015011-9015091 6.83e-01 80 chrIII:3783000-3783080 5.07e-02 80 chrII:9603023-9603103 7.80e-01 80 chrI:1691526-1691606 9.31e-03 80 chrIV:11645393-11645473 1.86e-01 80 chrIV:14622233-14622313 1.03e-01 80 chrX:17385211-17385291 2.88e-02 80 chrX:12388287-12388367 6.15e-01 80 chrII:8742190-8742270 9.53e-02 80 chrX:5517410-5517490 5.49e-01 80 chrIII:10601027-10601107 8.22e-02 80 chrI:9705579-9705659 1.89e-01 80 chrII:1996072-1996152 6.21e-01 80 chrII:7281940-7282020 2.12e-02 80 chrI:10755265-10755345 1.67e-02 80 chrI:7658337-7658417 6.09e-03 25_[+2(2.03e-05)]_47 chrIII:10526194-10526274 2.38e-03 5_[+1(3.11e-05)]_67 chrIV:10339849-10339929 8.28e-01 80 chrIV:4971192-4971272 2.19e-01 67_[+2(9.30e-05)]_5 chrII:5329189-5329269 6.11e-03 37_[+2(5.38e-05)]_35 chrII:9472151-9472231 7.98e-01 80 chrV:1951560-1951640 4.95e-01 80 chrI:2672671-2672751 6.75e-01 80 chrV:6659920-6660000 2.53e-01 80 chrI:5599591-5599671 1.26e-02 68_[+1(7.97e-05)]_4 chrI:8347644-8347724 3.34e-01 80 chrX:16637973-16638053 2.19e-01 80 chrIII:5758814-5758894 1.18e-05 3_[+3(2.02e-05)]_46_[+4(7.80e-06)]_\ 15 chrX:1536301-1536381 7.24e-01 80 chrV:618121-618201 1.11e-02 25_[+2(2.83e-05)]_47 chrV:15162893-15162973 1.60e-01 80 chrII:10236184-10236264 1.42e-01 56_[+4(6.14e-05)]_16 chrIII:7560047-7560127 1.51e-01 80 chrX:11193882-11193962 7.12e-01 80 chrX:8583005-8583085 8.21e-01 80 chrX:8724007-8724087 5.54e-02 80 chrI:9100206-9100286 7.80e-02 80 chrII:9982164-9982244 6.45e-01 80 chrII:9984953-9985033 1.32e-01 4_[+3(2.02e-05)]_68 chrX:12669121-12669201 4.84e-01 80 chrII:5331869-5331949 1.90e-01 80 chrIV:9948155-9948235 1.54e-02 80 chrII:14598544-14598624 5.94e-02 72_[+1(3.11e-05)] chrIV:11352735-11352815 1.86e-01 80 chrV:18704967-18705047 6.68e-01 80 chrV:2672765-2672845 4.34e-02 80 chrII:14044416-14044496 4.52e-03 58_[+4(6.14e-05)]_14 chrIV:10500112-10500192 2.10e-01 80 chrII:9937752-9937832 1.62e-04 10_[+4(7.80e-06)]_62 chrIII:12457075-12457155 3.02e-01 80 chrII:9130450-9130530 7.87e-01 80 chrII:6291671-6291751 7.98e-02 80 chrV:4693396-4693476 5.87e-04 58_[+2(4.13e-05)]_14 chrX:15378927-15379007 2.51e-02 80 chrII:10197250-10197330 2.76e-03 64_[+1(7.97e-05)]_8 chrII:7421078-7421158 7.07e-01 80 chrV:10868333-10868413 2.56e-01 80 chrI:8527-8607 7.82e-02 80 chrV:7432001-7432081 5.91e-01 80 chrIV:13080328-13080408 9.39e-02 80 chrV:9047939-9048019 2.48e-01 80 chrX:14839481-14839561 9.99e-01 80 chrIV:2734788-2734868 3.47e-02 80 chrX:3115556-3115636 2.71e-02 80 chrIV:1483820-1483900 5.43e-03 80 chrIII:6898656-6898736 1.31e-03 34_[+3(3.31e-05)]_23_[+2(1.25e-05)]_\ 7 chrI:3352323-3352403 1.63e-01 80 chrI:9372020-9372100 2.60e-01 80 chrII:9765659-9765739 8.80e-01 80 chrII:6941685-6941765 5.95e-01 80 chrIV:1826818-1826898 9.42e-01 80 chrV:10874407-10874487 2.32e-01 80 chrX:13358821-13358901 1.14e-01 80 chrII:9986874-9986954 1.15e-01 10_[+3(3.31e-05)]_62 chrII:9996546-9996626 6.51e-01 80 chrX:12523124-12523204 6.60e-01 80 chrIII:6144816-6144896 3.45e-01 80 chrX:14508973-14509053 3.79e-01 80 chrII:5945170-5945250 6.01e-01 80 chrII:7057868-7057948 3.17e-01 80 chrV:9958882-9958962 3.67e-03 80 chrIV:14274918-14274998 4.59e-01 80 chrII:9768497-9768577 9.79e-01 80 chrX:3903933-3904013 5.75e-01 80 chrII:13469351-13469431 3.77e-03 23_[+2(1.25e-05)]_49 chrI:9095716-9095796 1.50e-01 20_[+3(7.15e-05)]_52 chrV:1662552-1662632 5.92e-01 80 chrV:10174849-10174929 1.68e-01 80 chrI:7658881-7658961 2.91e-01 80 chrIV:6879080-6879160 2.07e-03 41_[+2(1.25e-05)]_31 chrX:12200854-12200934 2.55e-01 80 chrI:12920719-12920799 3.43e-01 80 chrV:6204115-6204195 7.04e-01 80 chrII:9601179-9601259 1.06e-01 47_[+1(7.97e-05)]_25 chrIII:835636-835716 5.51e-01 80 chrIV:11385277-11385357 3.08e-01 80 chrV:11638735-11638815 2.31e-01 80 chrII:6028678-6028758 5.24e-01 80 chrV:13763874-13763954 1.38e-01 80 chrII:7321624-7321704 5.11e-01 80 chrIV:10481873-10481953 1.08e-01 80 chrIII:8229654-8229734 5.08e-01 80 chrI:14855722-14855802 3.56e-02 80 chrII:8707198-8707278 1.38e-02 80 chrII:9787536-9787616 1.80e-02 80 chrX:17043163-17043243 4.65e-02 62_[+3(2.02e-05)]_10 chrX:10768335-10768415 9.22e-01 80 chrII:6216787-6216867 1.05e-01 26_[+2(8.29e-05)]_46 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n10.farnam.hpc.yale.internal ********************************************************************************