******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/worm/fasta/RankLinear2.0_40/mxl-3.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrIII:11040757-11040837 1.0000 80 chrX:13846182-13846262 1.0000 80 chrIII:5434988-5435068 1.0000 80 chrI:7072433-7072513 1.0000 80 chrII:9485452-9485532 1.0000 80 chrV:3693782-3693862 1.0000 80 chrI:429300-429380 1.0000 80 chrV:19755403-19755483 1.0000 80 chrIII:9454844-9454924 1.0000 80 chrV:15774100-15774180 1.0000 80 chrIII:2676211-2676291 1.0000 80 chrI:1845036-1845116 1.0000 80 chrIV:2195778-2195858 1.0000 80 chrI:7243921-7244001 1.0000 80 chrV:11265667-11265747 1.0000 80 chrII:8359473-8359553 1.0000 80 chrIII:6216117-6216197 1.0000 80 chrV:1829988-1830068 1.0000 80 chrIII:6395880-6395960 1.0000 80 chrIV:12711210-12711290 1.0000 80 chrV:2212076-2212156 1.0000 80 chrI:11491462-11491542 1.0000 80 chrII:11705984-11706064 1.0000 80 chrIII:5964536-5964616 1.0000 80 chrX:12449434-12449514 1.0000 80 chrIV:523800-523880 1.0000 80 chrIV:5706731-5706811 1.0000 80 chrIII:8732100-8732180 1.0000 80 chrII:7273658-7273738 1.0000 80 chrI:12504985-12505065 1.0000 80 chrI:9244715-9244795 1.0000 80 chrIII:10167797-10167877 1.0000 80 chrII:4392653-4392733 1.0000 80 chrX:6649738-6649818 1.0000 80 chrI:11783618-11783698 1.0000 80 chrIV:10682324-10682404 1.0000 80 chrV:9507122-9507202 1.0000 80 chrII:13618011-13618091 1.0000 80 chrX:10628599-10628679 1.0000 80 chrI:12055285-12055365 1.0000 80 chrII:13333508-13333588 1.0000 80 chrV:13410804-13410884 1.0000 80 chrII:10289116-10289196 1.0000 80 chrIII:10236499-10236579 1.0000 80 chrX:10431161-10431241 1.0000 80 chrV:12113848-12113928 1.0000 80 chrX:16163559-16163639 1.0000 80 chrX:10231065-10231145 1.0000 80 chrV:1164349-1164429 1.0000 80 chrIII:7292730-7292810 1.0000 80 chrV:5027818-5027898 1.0000 80 chrX:16290710-16290790 1.0000 80 chrX:13760212-13760292 1.0000 80 chrII:14838764-14838844 1.0000 80 chrIII:11380728-11380808 1.0000 80 chrIV:9593621-9593701 1.0000 80 chrIV:8452041-8452121 1.0000 80 chrII:1244557-1244637 1.0000 80 chrIII:5096881-5096961 1.0000 80 chrII:4090930-4091010 1.0000 80 chrX:12934862-12934942 1.0000 80 chrX:13347389-13347469 1.0000 80 chrII:12615575-12615655 1.0000 80 chrIV:7233575-7233655 1.0000 80 chrIII:8133514-8133594 1.0000 80 chrIV:1209479-1209559 1.0000 80 chrX:5346499-5346579 1.0000 80 chrIV:7011871-7011951 1.0000 80 chrII:1315328-1315408 1.0000 80 chrIV:633732-633812 1.0000 80 chrII:10139380-10139460 1.0000 80 chrIV:8450682-8450762 1.0000 80 chrIII:8504350-8504430 1.0000 80 chrIV:17387734-17387814 1.0000 80 chrII:10925902-10925982 1.0000 80 chrX:15280446-15280526 1.0000 80 chrII:9076677-9076757 1.0000 80 chrX:16625246-16625326 1.0000 80 chrII:4469175-4469255 1.0000 80 chrV:12296854-12296934 1.0000 80 chrIII:12860307-12860387 1.0000 80 chrX:5476492-5476572 1.0000 80 chrII:11830791-11830871 1.0000 80 chrIV:12641597-12641677 1.0000 80 chrI:3861554-3861634 1.0000 80 chrX:5630102-5630182 1.0000 80 chrIII:10489173-10489253 1.0000 80 chrX:11324387-11324467 1.0000 80 chrII:7931978-7932058 1.0000 80 chrII:112404-112484 1.0000 80 chrV:3610891-3610971 1.0000 80 chrII:5047442-5047522 1.0000 80 chrV:16390834-16390914 1.0000 80 chrV:13414862-13414942 1.0000 80 chrIV:13394853-13394933 1.0000 80 chrV:19846357-19846437 1.0000 80 chrX:12781885-12781965 1.0000 80 chrV:11797652-11797732 1.0000 80 chrV:10886509-10886589 1.0000 80 chrIV:1819120-1819200 1.0000 80 chrV:13376781-13376861 1.0000 80 chrII:5142233-5142313 1.0000 80 chrI:11014219-11014299 1.0000 80 chrIII:10170380-10170460 1.0000 80 chrII:9231380-9231460 1.0000 80 chrIV:6655906-6655986 1.0000 80 chrII:7695847-7695927 1.0000 80 chrX:461245-461325 1.0000 80 chrII:6448907-6448987 1.0000 80 chrI:1778855-1778935 1.0000 80 chrIV:300446-300526 1.0000 80 chrII:9189771-9189851 1.0000 80 chrIV:12366904-12366984 1.0000 80 chrIV:17171911-17171991 1.0000 80 chrI:4918269-4918349 1.0000 80 chrIII:8772594-8772674 1.0000 80 chrV:2135545-2135625 1.0000 80 chrX:15487430-15487510 1.0000 80 chrII:12854951-12855031 1.0000 80 chrV:12919863-12919943 1.0000 80 chrX:5645827-5645907 1.0000 80 chrIII:3349242-3349322 1.0000 80 chrII:4874617-4874697 1.0000 80 chrIV:9477273-9477353 1.0000 80 chrII:13174591-13174671 1.0000 80 chrII:14665237-14665317 1.0000 80 chrI:1230536-1230616 1.0000 80 chrIV:4475804-4475884 1.0000 80 chrX:2108321-2108401 1.0000 80 chrII:14234845-14234925 1.0000 80 chrV:13659352-13659432 1.0000 80 chrV:8660665-8660745 1.0000 80 chrX:15424183-15424263 1.0000 80 chrX:17197974-17198054 1.0000 80 chrI:4334515-4334595 1.0000 80 chrII:13145346-13145426 1.0000 80 chrII:12053659-12053739 1.0000 80 chrIII:11811953-11812033 1.0000 80 chrI:6974319-6974399 1.0000 80 chrI:10231825-10231905 1.0000 80 chrI:14465308-14465388 1.0000 80 chrIV:1652868-1652948 1.0000 80 chrII:11928951-11929031 1.0000 80 chrV:19524788-19524868 1.0000 80 chrIII:12232188-12232268 1.0000 80 chrII:6449783-6449863 1.0000 80 chrIII:8926643-8926723 1.0000 80 chrX:11720257-11720337 1.0000 80 chrI:9541246-9541326 1.0000 80 chrX:8384824-8384904 1.0000 80 chrV:11680484-11680564 1.0000 80 chrII:10860995-10861075 1.0000 80 chrI:3899826-3899906 1.0000 80 chrX:3824620-3824700 1.0000 80 chrX:460470-460550 1.0000 80 chrII:8765280-8765360 1.0000 80 chrII:11220906-11220986 1.0000 80 chrI:8013471-8013551 1.0000 80 chrV:20832036-20832116 1.0000 80 chrIV:9564155-9564235 1.0000 80 chrIV:7497363-7497443 1.0000 80 chrV:385666-385746 1.0000 80 chrV:4820808-4820888 1.0000 80 chrII:8822856-8822936 1.0000 80 chrIII:9698786-9698866 1.0000 80 chrX:1422307-1422387 1.0000 80 chrV:8307192-8307272 1.0000 80 chrV:12199607-12199687 1.0000 80 chrIV:10858749-10858829 1.0000 80 chrII:9233912-9233992 1.0000 80 chrIV:10421395-10421475 1.0000 80 chrII:9656385-9656465 1.0000 80 chrV:10190387-10190467 1.0000 80 chrV:8026510-8026590 1.0000 80 chrIII:11087584-11087664 1.0000 80 chrII:8329697-8329777 1.0000 80 chrX:1117389-1117469 1.0000 80 chrX:17070646-17070726 1.0000 80 chrV:6211618-6211698 1.0000 80 chrI:10174887-10174967 1.0000 80 chrV:6513498-6513578 1.0000 80 chrI:4304020-4304100 1.0000 80 chrI:4333951-4334031 1.0000 80 chrIII:844148-844228 1.0000 80 chrI:14993159-14993239 1.0000 80 chrV:12879535-12879615 1.0000 80 chrX:16627166-16627246 1.0000 80 chrI:13501071-13501151 1.0000 80 chrII:3437278-3437358 1.0000 80 chrX:10054524-10054604 1.0000 80 chrV:8682865-8682945 1.0000 80 chrII:8264756-8264836 1.0000 80 chrIV:8174983-8175063 1.0000 80 chrX:16871461-16871541 1.0000 80 chrIII:8688810-8688890 1.0000 80 chrII:7404159-7404239 1.0000 80 chrIV:9112205-9112285 1.0000 80 chrX:17540126-17540206 1.0000 80 chrV:2710049-2710129 1.0000 80 chrIII:1053226-1053306 1.0000 80 chrX:11992958-11993038 1.0000 80 chrI:14320487-14320567 1.0000 80 chrX:4504457-4504537 1.0000 80 chrX:1578794-1578874 1.0000 80 chrIV:5860866-5860946 1.0000 80 chrV:6970203-6970283 1.0000 80 chrV:5647498-5647578 1.0000 80 chrIV:1657217-1657297 1.0000 80 chrV:11221963-11222043 1.0000 80 chrX:16793643-16793723 1.0000 80 chrII:14673835-14673915 1.0000 80 chrIV:11957241-11957321 1.0000 80 chrV:14993802-14993882 1.0000 80 chrIII:7722546-7722626 1.0000 80 chrV:9324323-9324403 1.0000 80 chrX:11264904-11264984 1.0000 80 chrV:14212983-14213063 1.0000 80 chrX:10761114-10761194 1.0000 80 chrX:6876428-6876508 1.0000 80 chrX:6240422-6240502 1.0000 80 chrX:13368436-13368516 1.0000 80 chrI:2835394-2835474 1.0000 80 chrV:8409821-8409901 1.0000 80 chrIV:1820426-1820506 1.0000 80 chrX:5524359-5524439 1.0000 80 chrII:11181428-11181508 1.0000 80 chrX:381130-381210 1.0000 80 chrIII:1682432-1682512 1.0000 80 chrIV:6082400-6082480 1.0000 80 chrX:4520139-4520219 1.0000 80 chrII:1240623-1240703 1.0000 80 chrIV:13413151-13413231 1.0000 80 chrIII:9698123-9698203 1.0000 80 chrIII:6179191-6179271 1.0000 80 chrII:7776870-7776950 1.0000 80 chrI:516796-516876 1.0000 80 chrX:11499968-11500048 1.0000 80 chrIV:9913135-9913215 1.0000 80 chrI:1540542-1540622 1.0000 80 chrX:5338124-5338204 1.0000 80 chrX:11345138-11345218 1.0000 80 chrII:6615424-6615504 1.0000 80 chrII:11502123-11502203 1.0000 80 chrIV:17174237-17174317 1.0000 80 chrII:13861087-13861167 1.0000 80 chrI:3724789-3724869 1.0000 80 chrV:14510902-14510982 1.0000 80 chrX:2385731-2385811 1.0000 80 chrI:2064815-2064895 1.0000 80 chrV:5410820-5410900 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/worm/inference_raw/MEME/RankLinear2.0_40_mxl-3/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/worm/fasta/RankLinear2.0_40/mxl-3.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.277 C 0.227 G 0.23 T 0.266 Background letter frequencies (from file dataset with add-one prior applied): A 0.277 C 0.227 G 0.23 T 0.266 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF MCACGTGK MEME-1 width = 8 sites = 129 llr = 922 E-value = 7.9e-064 ******************************************************************************** -------------------------------------------------------------------------------- Motif MCACGTGK MEME-1 Description -------------------------------------------------------------------------------- Simplified A 51a:1::1 pos.-specific C 49:8:::1 probability G 1:::9:84 matrix T :::2:a24 bits 2.1 1.9 * 1.7 * * 1.5 ***** Relative 1.3 ****** Entropy 1.1 ****** (10.3 bits) 0.9 ****** 0.6 ******* 0.4 ******** 0.2 ******** 0.0 -------- Multilevel ACACGTGG consensus C T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MCACGTGK MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIV:6082400-6082480 64 1.05e-05 GATAAGATTG CCACGTGG GTCCGAGTC chrIII:1682432-1682512 44 1.05e-05 TGATCATGAA CCACGTGG AATTGGATAA chrII:8329697-8329777 6 1.05e-05 CTTTA CCACGTGG AATACACCAG chrIV:9564155-9564235 26 1.05e-05 ACCACGTGGA CCACGTGG AGTTGCTGGA chrV:19524788-19524868 38 1.05e-05 AATTTTTGAG CCACGTGG CTGGGCGGAG chrI:4918269-4918349 67 1.05e-05 CCCTCCTCTC CCACGTGG TTTTTT chrV:12296854-12296934 35 1.05e-05 CATTTACCTA CCACGTGG CAAATCCCTC chrIII:8732100-8732180 49 1.05e-05 GACAGACAAC CCACGTGG GGTATCCTCT chrIV:12711210-12711290 55 1.05e-05 GCCCTCGCGC CCACGTGG GGGTCTTGCT chrIII:6395880-6395960 11 1.05e-05 GGATCGGGAG CCACGTGG CAGAGATGGA chrV:15774100-15774180 14 1.05e-05 CCCTCCGATT CCACGTGG GTGTCTGCAG chrI:7072433-7072513 48 1.05e-05 AAGTAGACAG CCACGTGG AAAGCAGGCC chrV:5410820-5410900 44 2.26e-05 TAGACAATGA CCACGTGT GGGAAGAGGA chrI:2064815-2064895 20 2.26e-05 TCAAAAAGTT CCACGTGT CCGCTAGTCA chrX:4504457-4504537 5 2.26e-05 AGAC CCACGTGT CTTTCGAGCT chrV:2710049-2710129 60 2.26e-05 TATAACGTGA CCACGTGT AGAGTGGTGA chrV:8026510-8026590 52 2.26e-05 TCTCTGTGTC CCACGTGT AAGAATACGT chrII:1315328-1315408 19 2.26e-05 cagcctgaca ccacgtgT ATACTTCACT chrIV:9593621-9593701 16 2.26e-05 AATTATGGAA CCACGTGT CGATCAACTG chrX:16290710-16290790 41 2.26e-05 AACTTTGAAA CCACGTGT AGCAGACATT chrX:10231065-10231145 20 2.26e-05 AAACCAGATA CCACGTGT AATCGTCAGA chrX:16163559-16163639 42 2.26e-05 GTTGATGTCC CCACGTGT TGAGCAGGAA chrI:12504985-12505065 59 2.26e-05 TAAAGTGTGG CCACGTGT TTTCCGCAAA chrIV:11957241-11957321 18 3.54e-05 AGTGAAACAA ACACGTGG CGATATGATG chrX:16871461-16871541 15 3.54e-05 CGCGCGACTA ACACGTGG GAATTCAGAA chrI:13501071-13501151 10 3.54e-05 CTTACACAC ACACGTGG CGACCATCTG chrV:385666-385746 34 3.54e-05 CGAAATTCAA ACACGTGG TGTGCATATT chrII:8765280-8765360 29 3.54e-05 TACACAACCT ACACGTGG GTTTTCATTA chrIV:1652868-1652948 65 3.54e-05 GTAACTTGAG ACACGTGG GAAAATCG chrIV:4475804-4475884 24 3.54e-05 AACGTGTGGA ACACGTGG TTCTTCACCA chrI:1230536-1230616 36 3.54e-05 ATGAGGAGTG ACACGTGG TGATAGATAT chrII:7695847-7695927 48 3.54e-05 TTATCAGTAG ACACGTGG TGGTCGCCAC chrIII:5096881-5096961 31 3.54e-05 CAATTCATCA ACACGTGG TAGATGTCGA chrI:12055285-12055365 39 3.54e-05 CCCCTCTATT Acacgtgg tgtcaggctg chrI:1845036-1845116 31 3.54e-05 CATGCACGCA ACACGTGG CGGCGGGCAA chrX:10761114-10761194 26 5.02e-05 ATTAGTTACT ACACGTGT GCCATTGGCA chrIV:10858749-10858829 11 5.02e-05 GAGACAGCCC ACACGTGT TGATAAAATT chrI:6974319-6974399 14 5.02e-05 ACCACATTCA ACACGTGT CAGGGTGTTC chrII:14234845-14234925 22 5.02e-05 TGTCAGCTCA ACACGTGT TCACAGGAAG chrII:5142233-5142313 35 5.02e-05 TAGGAGAGAC ACACGTGT GTTTGGGGTT chrIV:10682324-10682404 27 5.02e-05 ATTTAGACCA ACACGTGT TCCACACTTG chrIII:5964536-5964616 69 5.02e-05 ACGTCCATAC ACACGTGT CTGC chrIII:11040757-11040837 45 5.02e-05 acacacacac acacGTGT GTGGGCAACA chrV:8682865-8682945 67 6.06e-05 TGTGGTGTGC CCACGTGC TGATAC chrX:17070646-17070726 42 6.06e-05 CTATCACCAC CCACGTGC TGCGGAGGGG chrV:4820808-4820888 7 6.06e-05 TCGATG CCACGTGC TTCTGTTAGC chrII:9656385-9656465 34 7.27e-05 GAACAAGTCA CCACGTTG CTTTACTTCT chrX:2108321-2108401 53 7.27e-05 GGTGTTGTGT CCACGTTG CACTGAGGCC chrI:3861554-3861634 8 7.27e-05 TCGACAA CCACGTTG CGCATACATT chrX:13846182-13846262 51 7.27e-05 ACAAAGGCAC CCACGTTG CGAGTTTTga chrV:14510902-14510982 67 1.12e-04 ATGATTTCCG ACACGTGC GAAATC chrV:9324323-9324403 43 1.12e-04 AGAAACACAT ACACGTGC TGCTGCAAGA chrI:11014219-11014299 45 1.12e-04 CAAGGCAGTG CCATGTGG CATAGTTAGA chrIV:1819120-1819200 50 1.12e-04 GCGCAAATGG CCATGTGG CTGGAACGGT chrII:4469175-4469255 12 1.12e-04 TTCGATCCGT CCACGTTT TGCCCGCTAA chrII:9231380-9231460 14 1.41e-04 TTGGCCTCAA CCATGTGT CTTATTCTCT chrV:16390834-16390914 21 1.41e-04 CCTCCGCCAG CCATGTGT GTCTCTCTCT chrV:3610891-3610971 13 1.41e-04 CGACAAACTG ACACGTTG GGTGGATATG chrIII:11380728-11380808 63 1.41e-04 GAGGAGGAAG ACACGTTG GAAGTTGTGA chrIV:523800-523880 50 1.41e-04 CATGGCGATG ACACGTTG GGAATGCTCA chrIII:6216117-6216197 40 1.41e-04 AATTGTGATA ACACGTTG CGGACACATG chrIII:9454844-9454924 53 1.41e-04 ACCTGTAGGA ACACGTTG ACTAAGAGAG chrII:7776870-7776950 35 1.73e-04 CTGATAATAG ACACGTTT TGTACTCTGC chrIII:8772594-8772674 31 1.73e-04 tctcaCTGCG ACACGTTT CAGTCATGCC chrII:12615575-12615655 52 1.73e-04 AATAGTTCTG ACATGTGG TCAGCATGTG chrII:14838764-14838844 10 1.73e-04 CCGCCATCA ACATGTGG CTTCCGTGTA chrIII:7292730-7292810 64 1.73e-04 GAATGACTGC ACATGTGG AGGCACTTT chrIV:1657217-1657297 31 2.13e-04 AAATGGAGAG ACATGTGT AACCTAGAGG chrI:10231825-10231905 57 2.13e-04 TCCAAACAAG ACATGTGT GTATGTATGT chrII:9076677-9076757 23 2.13e-04 cgcgccgGCA ACATGTGT TCATGAAGGA chrIV:7011871-7011951 39 2.13e-04 TTTTCTTTAA ACATGTGT TCGACGACAC chrX:10628599-10628679 37 2.13e-04 ATCATTGCAA CCACGTGA AGATACCATT chrX:10054524-10054604 56 2.38e-04 AAAAAAAGAA GCACGTGT AGATAAAAAA chrII:8822856-8822936 44 2.38e-04 AACGTGTTCC CCACATGG AGTTGATCGG chrIV:7233575-7233655 2 2.38e-04 A CCACATGG ACTATGAAAA chrX:13760212-13760292 31 2.38e-04 CTTATCAGTG CCACATGG CGTGCCCACA chrV:2212076-2212156 15 2.81e-04 TATACATAAA ACACGTGA AAGAACGATG chrX:1117389-1117469 5 3.11e-04 GTGC CAACGTGT TGCTGATAAC chrI:8013471-8013551 5 3.11e-04 CAAA ACACATGG CATATTTTCA chrV:2135545-2135625 57 3.11e-04 gaTGGGAAAC ACACATGG CGGAAAGGTC chrIV:1209479-1209559 71 3.11e-04 ATGTTGATAA CAACGTGT TC chrIV:8452041-8452121 48 3.11e-04 CCACCTACAA CAACGTGT CGTTGAAACA chrX:10431161-10431241 32 3.11e-04 GACTGGGGGT ACACATGG TGATAGTGCC chrII:4392653-4392733 34 3.11e-04 TTCTCTCTGT CAACGTGT TTCTCAGCTT chrIII:11087584-11087664 25 3.45e-04 TATTCCCGAC ACACATGT TCCACTCGGC chrII:10860995-10861075 61 3.45e-04 GAAGCAGCAA ACACATGT GATAAGAAAA chrIV:300446-300526 61 3.45e-04 TCACCCCACA ACACATGT CACATCCCGA chrII:13618011-13618091 61 3.45e-04 TATATGTTGA AAACGTGG TAGCCATGCT chrV:13410804-13410884 5 3.63e-04 ACGA AAACGTGT CTCTGATCTG chrX:3824620-3824700 37 3.72e-04 GCAGCAACTT CCACGCGG ACGACGGAAA chrX:1578794-1578874 61 3.94e-04 TCCGCAACCG CCACGTTC CCTTTTACTC chrX:461245-461325 24 4.17e-04 CTAGCATGCA ACACGCGG AAGTTTCCAC chrV:12199607-12199687 62 4.59e-04 TCCTTTCTCT ACACGCGT GAGTGTTTTC chrV:14993802-14993882 28 4.90e-04 TGACGGCATG ACATGTGC TTCGCACCGT chrIV:7497363-7497443 62 4.90e-04 ACCCGACAGC ACATGTGC ACGTTGGAAT chrIV:17171911-17171991 33 5.77e-04 CACTATATCA GCACGTTG TTCACCATCT chrX:15280446-15280526 13 5.77e-04 GCCTTCTTTG CCACGTTA CTTGTCGAAC chrII:11181428-11181508 65 6.58e-04 CAGCGACAAC GCACGTTT TGTCTGCG chrIII:7722546-7722626 47 6.58e-04 TTGAGAATCG GCACGTTT TCGTTTTCGC chrV:5647498-5647578 46 6.58e-04 CCACTAGAAA CCATGTGA GGTTTCATAT chrI:10174887-10174967 36 6.58e-04 ACAGTGATTC GCACGTTT TTACGAAACT chrIV:13394853-13394933 48 6.58e-04 GAGGAGGCGG CAACGTGC GGTACAATGC chrX:11324387-11324467 6 6.58e-04 AATCA CCATGTGA ATTTCGAGTC chrX:5630102-5630182 17 6.58e-04 ACAATAATAA TCACGTGG TGTCTCCACA chrII:11705984-11706064 73 6.58e-04 GAATTTGTTA CAACGTGC chrX:11499968-11500048 20 7.66e-04 TTGCCGACTG CCACATTT TTGCCTTCAA chrII:13145346-13145426 26 7.66e-04 TAACAGGTGG CCACATTT TGATCCTGAT chrX:5645827-5645907 44 7.66e-04 CTGGACAGTG GCATGTGT TAACCAAGCC chrII:10925902-10925982 26 7.66e-04 TATTTCGTAT TCACGTGT TCCGTTGACC chrI:7243921-7244001 66 7.66e-04 TGAGAAGAAA CCATATGG CATGATT chrX:17197974-17198054 7 8.67e-04 CGCCGT CCATATGT GGAAATGTTT chrII:4874617-4874697 34 8.67e-04 GGCATGTGAA CAACGTTT ATGAAGACGT chrX:13347389-13347469 61 8.67e-04 CAGGAACTAG ACATGTGA AAATTACGAT chrX:2385731-2385811 22 9.54e-04 ccgTCTAACC ACACATTT CGACAAAGGC chrII:9233912-9233992 43 9.54e-04 TTTATTTCGG ACACATTT CTTCTTTTGT chrX:1422307-1422387 63 9.54e-04 AACTCTCACA CAATGTGT TGTCCGTCTC chrV:11797652-11797732 66 1.04e-03 atgtggcagg aaatgtgg cGTTGCG chrV:19846357-19846437 49 1.04e-03 AAGTCACGTC AAATGTGG AAGGCTGCAT chrV:11265667-11265747 39 1.04e-03 TACAGCAGCA GCACATGG CAGTAATAAG chrII:7931978-7932058 49 1.11e-03 TCGATCAGAA CAACGTGA TGAAAGCATC chrV:5027818-5027898 24 1.11e-03 ACGGCGGGGC GCACATGT ACTACGGAAA chrII:10289116-10289196 37 1.11e-03 AACAGGGAAA AAATGTGT GTGATTCGGG chrV:6970203-6970283 28 1.16e-03 GAGACGTCAG ACACATGA ATCTCCCGGA chrX:16625246-16625326 55 1.16e-03 ACAGTCAATA GAACGTGT TTGAACCCGT chrIV:17387734-17387814 12 1.21e-03 AATCACTGAT AAACGTGA AAAGAGTGAG chrIV:5860866-5860946 26 1.26e-03 CTTCTTCGTT ACACGCGC GCGCCCCCCG chrIII:844148-844228 24 1.26e-03 CACGCTAAAA ACACGCGC GGCACTCGTT chrII:11928951-11929031 9 1.32e-03 AACATCTT CCATGTTC GTCTCTCTCT chrV:9507122-9507202 55 1.32e-03 CTCGTGTAAC ACACGCTG TCGGTTCAGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MCACGTGK MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:6082400-6082480 1e-05 63_[+1]_9 chrIII:1682432-1682512 1e-05 43_[+1]_29 chrII:8329697-8329777 1e-05 5_[+1]_67 chrIV:9564155-9564235 1e-05 25_[+1]_47 chrV:19524788-19524868 1e-05 37_[+1]_35 chrI:4918269-4918349 1e-05 66_[+1]_6 chrV:12296854-12296934 1e-05 34_[+1]_38 chrIII:8732100-8732180 1e-05 48_[+1]_24 chrIV:12711210-12711290 1e-05 54_[+1]_18 chrIII:6395880-6395960 1e-05 10_[+1]_62 chrV:15774100-15774180 1e-05 13_[+1]_59 chrI:7072433-7072513 1e-05 47_[+1]_25 chrV:5410820-5410900 2.3e-05 43_[+1]_29 chrI:2064815-2064895 2.3e-05 19_[+1]_53 chrX:4504457-4504537 2.3e-05 4_[+1]_68 chrV:2710049-2710129 2.3e-05 59_[+1]_13 chrV:8026510-8026590 2.3e-05 51_[+1]_21 chrII:1315328-1315408 2.3e-05 18_[+1]_54 chrIV:9593621-9593701 2.3e-05 15_[+1]_57 chrX:16290710-16290790 2.3e-05 40_[+1]_32 chrX:10231065-10231145 2.3e-05 19_[+1]_53 chrX:16163559-16163639 2.3e-05 41_[+1]_31 chrI:12504985-12505065 2.3e-05 58_[+1]_14 chrIV:11957241-11957321 3.5e-05 17_[+1]_55 chrX:16871461-16871541 3.5e-05 14_[+1]_58 chrI:13501071-13501151 3.5e-05 9_[+1]_63 chrV:385666-385746 3.5e-05 33_[+1]_39 chrII:8765280-8765360 3.5e-05 28_[+1]_44 chrIV:1652868-1652948 3.5e-05 64_[+1]_8 chrIV:4475804-4475884 3.5e-05 23_[+1]_49 chrI:1230536-1230616 3.5e-05 35_[+1]_37 chrII:7695847-7695927 3.5e-05 47_[+1]_25 chrIII:5096881-5096961 3.5e-05 30_[+1]_42 chrI:12055285-12055365 3.5e-05 38_[+1]_34 chrI:1845036-1845116 3.5e-05 30_[+1]_42 chrX:10761114-10761194 5e-05 25_[+1]_47 chrIV:10858749-10858829 5e-05 10_[+1]_62 chrI:6974319-6974399 5e-05 13_[+1]_59 chrII:14234845-14234925 5e-05 21_[+1]_51 chrII:5142233-5142313 5e-05 34_[+1]_38 chrIV:10682324-10682404 5e-05 26_[+1]_46 chrIII:5964536-5964616 5e-05 68_[+1]_4 chrIII:11040757-11040837 5e-05 44_[+1]_28 chrV:8682865-8682945 6.1e-05 66_[+1]_6 chrX:17070646-17070726 6.1e-05 41_[+1]_31 chrV:4820808-4820888 6.1e-05 6_[+1]_66 chrII:9656385-9656465 7.3e-05 33_[+1]_39 chrX:2108321-2108401 7.3e-05 52_[+1]_20 chrI:3861554-3861634 7.3e-05 7_[+1]_65 chrX:13846182-13846262 7.3e-05 50_[+1]_22 chrV:14510902-14510982 0.00011 66_[+1]_6 chrV:9324323-9324403 0.00011 42_[+1]_30 chrI:11014219-11014299 0.00011 44_[+1]_28 chrIV:1819120-1819200 0.00011 49_[+1]_23 chrII:4469175-4469255 0.00011 11_[+1]_61 chrII:9231380-9231460 0.00014 13_[+1]_59 chrV:16390834-16390914 0.00014 20_[+1]_52 chrV:3610891-3610971 0.00014 12_[+1]_60 chrIII:11380728-11380808 0.00014 62_[+1]_10 chrIV:523800-523880 0.00014 49_[+1]_23 chrIII:6216117-6216197 0.00014 39_[+1]_33 chrIII:9454844-9454924 0.00014 52_[+1]_20 chrII:7776870-7776950 0.00017 34_[+1]_38 chrIII:8772594-8772674 0.00017 30_[+1]_42 chrII:12615575-12615655 0.00017 51_[+1]_21 chrII:14838764-14838844 0.00017 9_[+1]_63 chrIII:7292730-7292810 0.00017 63_[+1]_9 chrIV:1657217-1657297 0.00021 30_[+1]_42 chrI:10231825-10231905 0.00021 56_[+1]_16 chrII:9076677-9076757 0.00021 22_[+1]_50 chrIV:7011871-7011951 0.00021 38_[+1]_34 chrX:10628599-10628679 0.00021 36_[+1]_36 chrX:10054524-10054604 0.00024 55_[+1]_17 chrII:8822856-8822936 0.00024 43_[+1]_29 chrIV:7233575-7233655 0.00024 1_[+1]_71 chrX:13760212-13760292 0.00024 30_[+1]_42 chrV:2212076-2212156 0.00028 14_[+1]_58 chrX:1117389-1117469 0.00031 4_[+1]_68 chrI:8013471-8013551 0.00031 4_[+1]_68 chrV:2135545-2135625 0.00031 56_[+1]_16 chrIV:1209479-1209559 0.00031 70_[+1]_2 chrIV:8452041-8452121 0.00031 47_[+1]_25 chrX:10431161-10431241 0.00031 31_[+1]_41 chrII:4392653-4392733 0.00031 33_[+1]_39 chrIII:11087584-11087664 0.00034 24_[+1]_48 chrII:10860995-10861075 0.00034 60_[+1]_12 chrIV:300446-300526 0.00034 60_[+1]_12 chrII:13618011-13618091 0.00034 60_[+1]_12 chrV:13410804-13410884 0.00036 4_[+1]_68 chrX:3824620-3824700 0.00037 36_[+1]_36 chrX:1578794-1578874 0.00039 60_[+1]_12 chrX:461245-461325 0.00042 23_[+1]_49 chrV:12199607-12199687 0.00046 61_[+1]_11 chrV:14993802-14993882 0.00049 27_[+1]_45 chrIV:7497363-7497443 0.00049 61_[+1]_11 chrIV:17171911-17171991 0.00058 32_[+1]_40 chrX:15280446-15280526 0.00058 12_[+1]_60 chrII:11181428-11181508 0.00066 64_[+1]_8 chrIII:7722546-7722626 0.00066 46_[+1]_26 chrV:5647498-5647578 0.00066 45_[+1]_27 chrI:10174887-10174967 0.00066 35_[+1]_37 chrIV:13394853-13394933 0.00066 47_[+1]_25 chrX:11324387-11324467 0.00066 5_[+1]_67 chrX:5630102-5630182 0.00066 16_[+1]_56 chrII:11705984-11706064 0.00066 72_[+1] chrX:11499968-11500048 0.00077 19_[+1]_53 chrII:13145346-13145426 0.00077 25_[+1]_47 chrX:5645827-5645907 0.00077 43_[+1]_29 chrII:10925902-10925982 0.00077 25_[+1]_47 chrI:7243921-7244001 0.00077 65_[+1]_7 chrX:17197974-17198054 0.00087 6_[+1]_66 chrII:4874617-4874697 0.00087 33_[+1]_39 chrX:13347389-13347469 0.00087 60_[+1]_12 chrX:2385731-2385811 0.00095 21_[+1]_51 chrII:9233912-9233992 0.00095 42_[+1]_30 chrX:1422307-1422387 0.00095 62_[+1]_10 chrV:11797652-11797732 0.001 65_[+1]_7 chrV:19846357-19846437 0.001 48_[+1]_24 chrV:11265667-11265747 0.001 38_[+1]_34 chrII:7931978-7932058 0.0011 48_[+1]_24 chrV:5027818-5027898 0.0011 23_[+1]_49 chrII:10289116-10289196 0.0011 36_[+1]_36 chrV:6970203-6970283 0.0012 27_[+1]_45 chrX:16625246-16625326 0.0012 54_[+1]_18 chrIV:17387734-17387814 0.0012 11_[+1]_61 chrIV:5860866-5860946 0.0013 25_[+1]_47 chrIII:844148-844228 0.0013 23_[+1]_49 chrII:11928951-11929031 0.0013 8_[+1]_64 chrV:9507122-9507202 0.0013 54_[+1]_18 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MCACGTGK MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF MCACGTGK width=8 seqs=129 chrIV:6082400-6082480 ( 64) CCACGTGG 1 chrIII:1682432-1682512 ( 44) CCACGTGG 1 chrII:8329697-8329777 ( 6) CCACGTGG 1 chrIV:9564155-9564235 ( 26) CCACGTGG 1 chrV:19524788-19524868 ( 38) CCACGTGG 1 chrI:4918269-4918349 ( 67) CCACGTGG 1 chrV:12296854-12296934 ( 35) CCACGTGG 1 chrIII:8732100-8732180 ( 49) CCACGTGG 1 chrIV:12711210-12711290 ( 55) CCACGTGG 1 chrIII:6395880-6395960 ( 11) CCACGTGG 1 chrV:15774100-15774180 ( 14) CCACGTGG 1 chrI:7072433-7072513 ( 48) CCACGTGG 1 chrV:5410820-5410900 ( 44) CCACGTGT 1 chrI:2064815-2064895 ( 20) CCACGTGT 1 chrX:4504457-4504537 ( 5) CCACGTGT 1 chrV:2710049-2710129 ( 60) CCACGTGT 1 chrV:8026510-8026590 ( 52) CCACGTGT 1 chrII:1315328-1315408 ( 19) CCACGTGT 1 chrIV:9593621-9593701 ( 16) CCACGTGT 1 chrX:16290710-16290790 ( 41) CCACGTGT 1 chrX:10231065-10231145 ( 20) CCACGTGT 1 chrX:16163559-16163639 ( 42) CCACGTGT 1 chrI:12504985-12505065 ( 59) CCACGTGT 1 chrIV:11957241-11957321 ( 18) ACACGTGG 1 chrX:16871461-16871541 ( 15) ACACGTGG 1 chrI:13501071-13501151 ( 10) ACACGTGG 1 chrV:385666-385746 ( 34) ACACGTGG 1 chrII:8765280-8765360 ( 29) ACACGTGG 1 chrIV:1652868-1652948 ( 65) ACACGTGG 1 chrIV:4475804-4475884 ( 24) ACACGTGG 1 chrI:1230536-1230616 ( 36) ACACGTGG 1 chrII:7695847-7695927 ( 48) ACACGTGG 1 chrIII:5096881-5096961 ( 31) ACACGTGG 1 chrI:12055285-12055365 ( 39) ACACGTGG 1 chrI:1845036-1845116 ( 31) ACACGTGG 1 chrX:10761114-10761194 ( 26) ACACGTGT 1 chrIV:10858749-10858829 ( 11) ACACGTGT 1 chrI:6974319-6974399 ( 14) ACACGTGT 1 chrII:14234845-14234925 ( 22) ACACGTGT 1 chrII:5142233-5142313 ( 35) ACACGTGT 1 chrIV:10682324-10682404 ( 27) ACACGTGT 1 chrIII:5964536-5964616 ( 69) ACACGTGT 1 chrIII:11040757-11040837 ( 45) ACACGTGT 1 chrV:8682865-8682945 ( 67) CCACGTGC 1 chrX:17070646-17070726 ( 42) CCACGTGC 1 chrV:4820808-4820888 ( 7) CCACGTGC 1 chrII:9656385-9656465 ( 34) CCACGTTG 1 chrX:2108321-2108401 ( 53) CCACGTTG 1 chrI:3861554-3861634 ( 8) CCACGTTG 1 chrX:13846182-13846262 ( 51) CCACGTTG 1 chrV:14510902-14510982 ( 67) ACACGTGC 1 chrV:9324323-9324403 ( 43) ACACGTGC 1 chrI:11014219-11014299 ( 45) CCATGTGG 1 chrIV:1819120-1819200 ( 50) CCATGTGG 1 chrII:4469175-4469255 ( 12) CCACGTTT 1 chrII:9231380-9231460 ( 14) CCATGTGT 1 chrV:16390834-16390914 ( 21) CCATGTGT 1 chrV:3610891-3610971 ( 13) ACACGTTG 1 chrIII:11380728-11380808 ( 63) ACACGTTG 1 chrIV:523800-523880 ( 50) ACACGTTG 1 chrIII:6216117-6216197 ( 40) ACACGTTG 1 chrIII:9454844-9454924 ( 53) ACACGTTG 1 chrII:7776870-7776950 ( 35) ACACGTTT 1 chrIII:8772594-8772674 ( 31) ACACGTTT 1 chrII:12615575-12615655 ( 52) ACATGTGG 1 chrII:14838764-14838844 ( 10) ACATGTGG 1 chrIII:7292730-7292810 ( 64) ACATGTGG 1 chrIV:1657217-1657297 ( 31) ACATGTGT 1 chrI:10231825-10231905 ( 57) ACATGTGT 1 chrII:9076677-9076757 ( 23) ACATGTGT 1 chrIV:7011871-7011951 ( 39) ACATGTGT 1 chrX:10628599-10628679 ( 37) CCACGTGA 1 chrX:10054524-10054604 ( 56) GCACGTGT 1 chrII:8822856-8822936 ( 44) CCACATGG 1 chrIV:7233575-7233655 ( 2) CCACATGG 1 chrX:13760212-13760292 ( 31) CCACATGG 1 chrV:2212076-2212156 ( 15) ACACGTGA 1 chrX:1117389-1117469 ( 5) CAACGTGT 1 chrI:8013471-8013551 ( 5) ACACATGG 1 chrV:2135545-2135625 ( 57) ACACATGG 1 chrIV:1209479-1209559 ( 71) CAACGTGT 1 chrIV:8452041-8452121 ( 48) CAACGTGT 1 chrX:10431161-10431241 ( 32) ACACATGG 1 chrII:4392653-4392733 ( 34) CAACGTGT 1 chrIII:11087584-11087664 ( 25) ACACATGT 1 chrII:10860995-10861075 ( 61) ACACATGT 1 chrIV:300446-300526 ( 61) ACACATGT 1 chrII:13618011-13618091 ( 61) AAACGTGG 1 chrV:13410804-13410884 ( 5) AAACGTGT 1 chrX:3824620-3824700 ( 37) CCACGCGG 1 chrX:1578794-1578874 ( 61) CCACGTTC 1 chrX:461245-461325 ( 24) ACACGCGG 1 chrV:12199607-12199687 ( 62) ACACGCGT 1 chrV:14993802-14993882 ( 28) ACATGTGC 1 chrIV:7497363-7497443 ( 62) ACATGTGC 1 chrIV:17171911-17171991 ( 33) GCACGTTG 1 chrX:15280446-15280526 ( 13) CCACGTTA 1 chrII:11181428-11181508 ( 65) GCACGTTT 1 chrIII:7722546-7722626 ( 47) GCACGTTT 1 chrV:5647498-5647578 ( 46) CCATGTGA 1 chrI:10174887-10174967 ( 36) GCACGTTT 1 chrIV:13394853-13394933 ( 48) CAACGTGC 1 chrX:11324387-11324467 ( 6) CCATGTGA 1 chrX:5630102-5630182 ( 17) TCACGTGG 1 chrII:11705984-11706064 ( 73) CAACGTGC 1 chrX:11499968-11500048 ( 20) CCACATTT 1 chrII:13145346-13145426 ( 26) CCACATTT 1 chrX:5645827-5645907 ( 44) GCATGTGT 1 chrII:10925902-10925982 ( 26) TCACGTGT 1 chrI:7243921-7244001 ( 66) CCATATGG 1 chrX:17197974-17198054 ( 7) CCATATGT 1 chrII:4874617-4874697 ( 34) CAACGTTT 1 chrX:13347389-13347469 ( 61) ACATGTGA 1 chrX:2385731-2385811 ( 22) ACACATTT 1 chrII:9233912-9233992 ( 43) ACACATTT 1 chrX:1422307-1422387 ( 63) CAATGTGT 1 chrV:11797652-11797732 ( 66) AAATGTGG 1 chrV:19846357-19846437 ( 49) AAATGTGG 1 chrV:11265667-11265747 ( 39) GCACATGG 1 chrII:7931978-7932058 ( 49) CAACGTGA 1 chrV:5027818-5027898 ( 24) GCACATGT 1 chrII:10289116-10289196 ( 37) AAATGTGT 1 chrV:6970203-6970283 ( 28) ACACATGA 1 chrX:16625246-16625326 ( 55) GAACGTGT 1 chrIV:17387734-17387814 ( 12) AAACGTGA 1 chrIV:5860866-5860946 ( 26) ACACGCGC 1 chrIII:844148-844228 ( 24) ACACGCGC 1 chrII:11928951-11929031 ( 9) CCATGTTC 1 chrV:9507122-9507202 ( 55) ACACGCTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MCACGTGK MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.88203 E= 7.9e-064 75 99 -172 -410 -116 195 -1366 -1366 185 -1366 -1366 -1366 -1366 184 -1366 -52 -99 -1366 190 -1366 -1366 -228 -1366 184 -1366 -1366 181 -46 -199 -117 86 63 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MCACGTGK MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 129 E= 7.9e-064 0.465116 0.449612 0.069767 0.015504 0.124031 0.875969 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.813953 0.000000 0.186047 0.139535 0.000000 0.860465 0.000000 0.000000 0.046512 0.000000 0.953488 0.000000 0.000000 0.806202 0.193798 0.069767 0.100775 0.418605 0.410853 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MCACGTGK MEME-1 regular expression -------------------------------------------------------------------------------- [AC]CACGTG[GT] -------------------------------------------------------------------------------- Time 5.08 secs. ******************************************************************************** ******************************************************************************** MOTIF TCTYTTTY MEME-2 width = 8 sites = 61 llr = 458 E-value = 7.0e-007 ******************************************************************************** -------------------------------------------------------------------------------- Motif TCTYTTTY MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C :8:42227 probability G ::1::::: matrix T a2968883 bits 2.1 1.9 * 1.7 * 1.5 *** Relative 1.3 *** *** Entropy 1.1 ******** (10.8 bits) 0.9 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TCTTTTTC consensus C CT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTYTTTY MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:5524359-5524439 9 3.38e-05 GTTTGCAA TCTTTTTC AGCCTGATCA chrI:2835394-2835474 10 3.38e-05 CCGTCTTGT TCTTTTTC CTTCCCCTTA chrV:11221963-11222043 70 3.38e-05 CAGTCTCGTC TCTCTTTC TGC chrI:4333951-4334031 10 3.38e-05 CCGCTGTTA TCTCTTTC TCTCTTTTTT chrII:8329697-8329777 55 3.38e-05 TCTCTTACAC TCTTTTTC TCTATCAAAT chrII:9233912-9233992 62 3.38e-05 TTCTTTTGTC TCTTTTTC TGGAGAAGAG chrIII:9698786-9698866 30 3.38e-05 TTTGTTATCA TCTTTTTC AGTTAAATTT chrI:8013471-8013551 37 3.38e-05 TGCATCGTTG TCtctttc tctttccttc chrI:6974319-6974399 61 3.38e-05 CACTTCCCTA TCTTTTTC AATTTTCTCT chrX:15487430-15487510 67 3.38e-05 TTCCTTCTTC TCTCTTTC CATCTT chrX:461245-461325 4 3.38e-05 CAA TCTTTTTC TGCTAGCATG chrII:112404-112484 4 3.38e-05 ACA TCTTTTTC AGTTATCAAT chrIV:9913135-9913215 11 7.35e-05 TGGTATTGCA TCTTTTTT CTCATCCTCT chrX:381130-381210 40 7.35e-05 AGCACCTGTG TCTCTTTT CTCGAACGCT chrV:5647498-5647578 64 7.35e-05 GGTTTCATAT TCTTTTTT CCTGTTGGA chrIII:11087584-11087664 62 7.35e-05 TATCGCCATT TCTTTTTT TTTTCGATTC chrIII:12232188-12232268 29 7.35e-05 gtcagcacgt tctttttt ccatgcgaaa chrI:4334515-4334595 67 7.35e-05 ATATTACCCG TCTCTTTT TATCAC chrIV:12641597-12641677 69 7.35e-05 ATCTCCTCTT TCTTTTTT TTTC chrII:1315328-1315408 39 7.35e-05 ACTTCACTCT TCTTTTTT TTGTTCCCCC chrIV:7233575-7233655 48 7.35e-05 GGATCCGGCT TCTCTTTT CTGTCTCCCG chrI:3899826-3899906 43 1.02e-04 GCTGTAACTT TCTTTTCC TGGTGTCCGA chrI:3861554-3861634 61 1.02e-04 GTCTCCGCAC TCTTTTCC TTCACAGTCC chrI:429300-429380 1 1.02e-04 . TCTCTTCC CCTGACCTCT chrII:11502123-11502203 10 1.60e-04 TTTCTCGAA TCTCCTTC TTGCCGAAAG chrI:1540542-1540622 30 1.60e-04 TTACGTCATC TCTCCTTC TTCCCCCATC chrIV:1820426-1820506 63 1.60e-04 ttcgacttct tcttcttc tgcttcttGC chrIV:5860866-5860946 15 1.60e-04 GTCATTTACC TCTTCTTC GTTACACGCG chrV:19524788-19524868 12 1.60e-04 CCGAGCTTCT TCTTCTTC TTCCAAAAAA chrI:10231825-10231905 41 1.60e-04 TCTATCACCC TCTTCTTC CAAACAAGAC chrII:13174591-13174671 1 1.60e-04 . tcttcttc tCCCCCATCC chrI:4918269-4918349 47 1.60e-04 TTTTGTTTTC TCTCTCTC GCCCCTCCTC chrV:10886509-10886589 61 1.60e-04 TCACTCACTT TCTTCTTC AGTTCGGTTC chrV:16390834-16390914 34 1.60e-04 TGTGTGTCTC TCTCTCTC TAGGCGGTAA chrIV:2195778-2195858 21 1.60e-04 TCTAATCGTA TCTCTCTC TGTGTCTCTT chrI:14993159-14993239 2 2.34e-04 A TCTCTTCT AATTATCACC chrV:4820808-4820888 31 2.34e-04 TAGCTATCTA TCTCTTCT CTCAGTTCTT chrII:9189771-9189851 28 2.34e-04 GTCATCTAAG TCTCTTCT CAAATCTTGT chrX:11324387-11324467 47 2.34e-04 CATTATCAAA TTTTTTTC GTTTTTCCTG chrIV:7011871-7011951 27 2.34e-04 GACACTTCCC TCTTTTCT TTAAACATGT chrX:16290710-16290790 4 2.34e-04 CTA TTTTTTTC GGCAGTTTTA chrIII:5964536-5964616 14 2.34e-04 AATTTTTGCA TCTCTTCT CGACACCCAT chrIII:8772594-8772674 14 3.01e-04 cattctctgt tctttctt ctcaCTGCGA chrII:5047442-5047522 60 3.01e-04 AATGTCTGAA TCTCTCTT ATCCGCAGTA chrII:7273658-7273738 35 3.01e-04 CGGTTTTTCG TCTCTCTT ATCAGTGTTA chrX:4520139-4520219 38 3.50e-04 TAGTGCGCAG TCTTTCCC GAAGACACCC chrV:8026510-8026590 11 3.50e-04 ACCATGTCTA TCTTTCCC GCACACGTGC chrI:11491462-11491542 52 3.50e-04 CCAACACGCT TCTCCTCC GCCACCGCCG chrIII:7722546-7722626 55 3.80e-04 CGGCACGTTT TCGTTTTC GCCTCTCTAG chrI:1230536-1230616 5 3.80e-04 AAGG TCGTTTTC ACCTTTCGAT chrX:6649738-6649818 7 3.80e-04 CAGTCA TCGTTTTC AACCGCCTCC chrV:3693782-3693862 22 3.80e-04 CGATTCATGC TCGCTTTC GTCACACTCC chrI:10174887-10174967 11 4.51e-04 TGCCTCTCTG TCTCCCTC TCTGCACACA chrV:20832036-20832116 64 4.51e-04 gtttgtcgtg tttctttt gtGCAATAA chrV:13659352-13659432 40 4.51e-04 TAGGACGGAC TTTCTTTT ATACAAATTG chrX:15424183-15424263 44 4.85e-04 TGCCCGACAC TTTCTTCC CTCCATTTAT chrI:2064815-2064895 4 6.10e-04 AGT TTTCCTTC AAAAAGTTCC chrX:10628599-10628679 2 6.10e-04 G TTTTTCTC GTGGGAAATA chrII:4392653-4392733 23 6.10e-04 TCTGTCTCTG TTTCTCTC TGTCAACGTG chrII:7776870-7776950 19 7.59e-04 ACTAACAAAC TTTTTTCT GATAATAGAC chrV:8307192-8307272 7 7.59e-04 TTTTCA TTTTTTCT GAAAAAGTGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTYTTTY MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:5524359-5524439 3.4e-05 8_[+2]_64 chrI:2835394-2835474 3.4e-05 9_[+2]_63 chrV:11221963-11222043 3.4e-05 69_[+2]_3 chrI:4333951-4334031 3.4e-05 9_[+2]_63 chrII:8329697-8329777 3.4e-05 54_[+2]_18 chrII:9233912-9233992 3.4e-05 61_[+2]_11 chrIII:9698786-9698866 3.4e-05 29_[+2]_43 chrI:8013471-8013551 3.4e-05 36_[+2]_36 chrI:6974319-6974399 3.4e-05 60_[+2]_12 chrX:15487430-15487510 3.4e-05 66_[+2]_6 chrX:461245-461325 3.4e-05 3_[+2]_69 chrII:112404-112484 3.4e-05 3_[+2]_69 chrIV:9913135-9913215 7.3e-05 10_[+2]_62 chrX:381130-381210 7.3e-05 39_[+2]_33 chrV:5647498-5647578 7.3e-05 63_[+2]_9 chrIII:11087584-11087664 7.3e-05 61_[+2]_11 chrIII:12232188-12232268 7.3e-05 28_[+2]_44 chrI:4334515-4334595 7.3e-05 66_[+2]_6 chrIV:12641597-12641677 7.3e-05 68_[+2]_4 chrII:1315328-1315408 7.3e-05 38_[+2]_34 chrIV:7233575-7233655 7.3e-05 47_[+2]_25 chrI:3899826-3899906 0.0001 42_[+2]_30 chrI:3861554-3861634 0.0001 60_[+2]_12 chrI:429300-429380 0.0001 [+2]_72 chrII:11502123-11502203 0.00016 9_[+2]_63 chrI:1540542-1540622 0.00016 29_[+2]_43 chrIV:1820426-1820506 0.00016 62_[+2]_10 chrIV:5860866-5860946 0.00016 14_[+2]_58 chrV:19524788-19524868 0.00016 11_[+2]_61 chrI:10231825-10231905 0.00016 40_[+2]_32 chrII:13174591-13174671 0.00016 [+2]_72 chrI:4918269-4918349 0.00016 46_[+2]_26 chrV:10886509-10886589 0.00016 60_[+2]_12 chrV:16390834-16390914 0.00016 33_[+2]_39 chrIV:2195778-2195858 0.00016 20_[+2]_52 chrI:14993159-14993239 0.00023 1_[+2]_71 chrV:4820808-4820888 0.00023 30_[+2]_42 chrII:9189771-9189851 0.00023 27_[+2]_45 chrX:11324387-11324467 0.00023 46_[+2]_26 chrIV:7011871-7011951 0.00023 26_[+2]_46 chrX:16290710-16290790 0.00023 3_[+2]_69 chrIII:5964536-5964616 0.00023 13_[+2]_59 chrIII:8772594-8772674 0.0003 13_[+2]_59 chrII:5047442-5047522 0.0003 59_[+2]_13 chrII:7273658-7273738 0.0003 34_[+2]_38 chrX:4520139-4520219 0.00035 37_[+2]_35 chrV:8026510-8026590 0.00035 10_[+2]_62 chrI:11491462-11491542 0.00035 51_[+2]_21 chrIII:7722546-7722626 0.00038 54_[+2]_18 chrI:1230536-1230616 0.00038 4_[+2]_68 chrX:6649738-6649818 0.00038 6_[+2]_66 chrV:3693782-3693862 0.00038 21_[+2]_51 chrI:10174887-10174967 0.00045 10_[+2]_62 chrV:20832036-20832116 0.00045 63_[+2]_9 chrV:13659352-13659432 0.00045 39_[+2]_33 chrX:15424183-15424263 0.00048 43_[+2]_29 chrI:2064815-2064895 0.00061 3_[+2]_69 chrX:10628599-10628679 0.00061 1_[+2]_71 chrII:4392653-4392733 0.00061 22_[+2]_50 chrII:7776870-7776950 0.00076 18_[+2]_54 chrV:8307192-8307272 0.00076 6_[+2]_66 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTYTTTY MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TCTYTTTY width=8 seqs=61 chrX:5524359-5524439 ( 9) TCTTTTTC 1 chrI:2835394-2835474 ( 10) TCTTTTTC 1 chrV:11221963-11222043 ( 70) TCTCTTTC 1 chrI:4333951-4334031 ( 10) TCTCTTTC 1 chrII:8329697-8329777 ( 55) TCTTTTTC 1 chrII:9233912-9233992 ( 62) TCTTTTTC 1 chrIII:9698786-9698866 ( 30) TCTTTTTC 1 chrI:8013471-8013551 ( 37) TCTCTTTC 1 chrI:6974319-6974399 ( 61) TCTTTTTC 1 chrX:15487430-15487510 ( 67) TCTCTTTC 1 chrX:461245-461325 ( 4) TCTTTTTC 1 chrII:112404-112484 ( 4) TCTTTTTC 1 chrIV:9913135-9913215 ( 11) TCTTTTTT 1 chrX:381130-381210 ( 40) TCTCTTTT 1 chrV:5647498-5647578 ( 64) TCTTTTTT 1 chrIII:11087584-11087664 ( 62) TCTTTTTT 1 chrIII:12232188-12232268 ( 29) TCTTTTTT 1 chrI:4334515-4334595 ( 67) TCTCTTTT 1 chrIV:12641597-12641677 ( 69) TCTTTTTT 1 chrII:1315328-1315408 ( 39) TCTTTTTT 1 chrIV:7233575-7233655 ( 48) TCTCTTTT 1 chrI:3899826-3899906 ( 43) TCTTTTCC 1 chrI:3861554-3861634 ( 61) TCTTTTCC 1 chrI:429300-429380 ( 1) TCTCTTCC 1 chrII:11502123-11502203 ( 10) TCTCCTTC 1 chrI:1540542-1540622 ( 30) TCTCCTTC 1 chrIV:1820426-1820506 ( 63) TCTTCTTC 1 chrIV:5860866-5860946 ( 15) TCTTCTTC 1 chrV:19524788-19524868 ( 12) TCTTCTTC 1 chrI:10231825-10231905 ( 41) TCTTCTTC 1 chrII:13174591-13174671 ( 1) TCTTCTTC 1 chrI:4918269-4918349 ( 47) TCTCTCTC 1 chrV:10886509-10886589 ( 61) TCTTCTTC 1 chrV:16390834-16390914 ( 34) TCTCTCTC 1 chrIV:2195778-2195858 ( 21) TCTCTCTC 1 chrI:14993159-14993239 ( 2) TCTCTTCT 1 chrV:4820808-4820888 ( 31) TCTCTTCT 1 chrII:9189771-9189851 ( 28) TCTCTTCT 1 chrX:11324387-11324467 ( 47) TTTTTTTC 1 chrIV:7011871-7011951 ( 27) TCTTTTCT 1 chrX:16290710-16290790 ( 4) TTTTTTTC 1 chrIII:5964536-5964616 ( 14) TCTCTTCT 1 chrIII:8772594-8772674 ( 14) TCTTTCTT 1 chrII:5047442-5047522 ( 60) TCTCTCTT 1 chrII:7273658-7273738 ( 35) TCTCTCTT 1 chrX:4520139-4520219 ( 38) TCTTTCCC 1 chrV:8026510-8026590 ( 11) TCTTTCCC 1 chrI:11491462-11491542 ( 52) TCTCCTCC 1 chrIII:7722546-7722626 ( 55) TCGTTTTC 1 chrI:1230536-1230616 ( 5) TCGTTTTC 1 chrX:6649738-6649818 ( 7) TCGTTTTC 1 chrV:3693782-3693862 ( 22) TCGCTTTC 1 chrI:10174887-10174967 ( 11) TCTCCCTC 1 chrV:20832036-20832116 ( 64) TTTCTTTT 1 chrV:13659352-13659432 ( 40) TTTCTTTT 1 chrX:15424183-15424263 ( 44) TTTCTTCC 1 chrI:2064815-2064895 ( 4) TTTCCTTC 1 chrX:10628599-10628679 ( 2) TTTTTCTC 1 chrII:4392653-4392733 ( 23) TTTCTCTC 1 chrII:7776870-7776950 ( 19) TTTTTTCT 1 chrV:8307192-8307272 ( 7) TTTTTTCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTYTTTY MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.9123 E= 7.0e-007 -1257 -1257 -1257 191 -1257 188 -1257 -70 -1257 -1257 -181 181 -1257 97 -1257 107 -1257 -33 -1257 162 -1257 -33 -1257 162 -1257 2 -1257 153 -1257 153 -1257 37 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTYTTTY MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 61 E= 7.0e-007 0.000000 0.000000 0.000000 1.000000 0.000000 0.836066 0.000000 0.163934 0.000000 0.000000 0.065574 0.934426 0.000000 0.442623 0.000000 0.557377 0.000000 0.180328 0.000000 0.819672 0.000000 0.180328 0.000000 0.819672 0.000000 0.229508 0.000000 0.770492 0.000000 0.655738 0.000000 0.344262 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTYTTTY MEME-2 regular expression -------------------------------------------------------------------------------- TCT[TC]TT[TC][CT] -------------------------------------------------------------------------------- Time 9.98 secs. ******************************************************************************** ******************************************************************************** MOTIF GAGACGCA MEME-3 width = 8 sites = 13 llr = 133 E-value = 7.1e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif GAGACGCA MEME-3 Description -------------------------------------------------------------------------------- Simplified A :a:a2::a pos.-specific C ::::6:a: probability G a:a:2a:: matrix T :::::::: bits 2.1 * * ** 1.9 **** *** 1.7 **** *** 1.5 **** *** Relative 1.3 **** *** Entropy 1.1 **** *** (14.8 bits) 0.9 **** *** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GAGACGCA consensus A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGACGCA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIV:13413151-13413231 55 1.33e-05 ACGCCTTCTG GAGACGCA GACGCGCAAG chrIV:1657217-1657297 53 1.33e-05 TAGAGGCAGA GAGACGCA GACTAGACAC chrIII:1053226-1053306 55 1.33e-05 AGAGGGGGCA GAGACGCA GACGGTGTAA chrII:3437278-3437358 19 1.33e-05 TGAGTGCGGA GAGACGCA GAGATGGATA chrV:10190387-10190467 6 1.33e-05 AAGTA GAGACGCA GATAAATTCA chrIV:1652868-1652948 13 1.33e-05 TGAGAGAAAC GAGACGCA GAAAAATTGG chrV:2212076-2212156 68 1.33e-05 AACGTGCCGA GAGACGCA GACTG chrI:1845036-1845116 72 1.33e-05 CAACATGTTA GAGACGCA G chrIV:523800-523880 32 2.96e-05 TTTGGAGCGG GAGAAGCA CATGGCGATG chrV:15774100-15774180 71 2.96e-05 GCAGGGGGAA GAGAAGCA GA chrV:19755403-19755483 68 2.96e-05 CAAAATGTGC GAGAAGCA TGGCA chrX:16793643-16793723 15 4.31e-05 GGTAGAAAAC GAGAGGCA GCGTTGTTGT chrIV:7011871-7011951 64 4.31e-05 CACACCTCTC GAGAGGCA TTCTGTCAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGACGCA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:13413151-13413231 1.3e-05 54_[+3]_18 chrIV:1657217-1657297 1.3e-05 52_[+3]_20 chrIII:1053226-1053306 1.3e-05 54_[+3]_18 chrII:3437278-3437358 1.3e-05 18_[+3]_54 chrV:10190387-10190467 1.3e-05 5_[+3]_67 chrIV:1652868-1652948 1.3e-05 12_[+3]_60 chrV:2212076-2212156 1.3e-05 67_[+3]_5 chrI:1845036-1845116 1.3e-05 71_[+3]_1 chrIV:523800-523880 3e-05 31_[+3]_41 chrV:15774100-15774180 3e-05 70_[+3]_2 chrV:19755403-19755483 3e-05 67_[+3]_5 chrX:16793643-16793723 4.3e-05 14_[+3]_58 chrIV:7011871-7011951 4.3e-05 63_[+3]_9 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGACGCA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GAGACGCA width=8 seqs=13 chrIV:13413151-13413231 ( 55) GAGACGCA 1 chrIV:1657217-1657297 ( 53) GAGACGCA 1 chrIII:1053226-1053306 ( 55) GAGACGCA 1 chrII:3437278-3437358 ( 19) GAGACGCA 1 chrV:10190387-10190467 ( 6) GAGACGCA 1 chrIV:1652868-1652948 ( 13) GAGACGCA 1 chrV:2212076-2212156 ( 68) GAGACGCA 1 chrI:1845036-1845116 ( 72) GAGACGCA 1 chrIV:523800-523880 ( 32) GAGAAGCA 1 chrV:15774100-15774180 ( 71) GAGAAGCA 1 chrV:19755403-19755483 ( 68) GAGAAGCA 1 chrX:16793643-16793723 ( 15) GAGAGGCA 1 chrIV:7011871-7011951 ( 64) GAGAGGCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGACGCA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.985 E= 7.1e+000 -1035 -1035 212 -1035 185 -1035 -1035 -1035 -1035 -1035 212 -1035 185 -1035 -1035 -1035 -26 144 -58 -1035 -1035 -1035 212 -1035 -1035 214 -1035 -1035 185 -1035 -1035 -1035 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGACGCA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 13 E= 7.1e+000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.230769 0.615385 0.153846 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGACGCA MEME-3 regular expression -------------------------------------------------------------------------------- GAGA[CA]GCA -------------------------------------------------------------------------------- Time 13.46 secs. ******************************************************************************** ******************************************************************************** MOTIF RVTGATAA MEME-4 width = 8 sites = 43 llr = 351 E-value = 6.6e-007 ******************************************************************************** -------------------------------------------------------------------------------- Motif RVTGATAA MEME-4 Description -------------------------------------------------------------------------------- Simplified A 62::a:7a pos.-specific C :3:::::: probability G 43:a::3: matrix T :2a::a:: bits 2.1 * 1.9 **** * 1.7 **** * 1.5 **** * Relative 1.3 **** * Entropy 1.1 * ****** (11.8 bits) 0.9 * ****** 0.6 * ****** 0.4 * ****** 0.2 ******** 0.0 -------- Multilevel ACTGATAA consensus GG G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RVTGATAA MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrV:14993802-14993882 53 2.17e-05 CGTTTCGACA ACTGATAA AACATGCACC chrV:5647498-5647578 28 2.17e-05 AACCCCTATC ACTGATAA CCACTAGAAA chrV:6211618-6211698 37 2.17e-05 GACAGGTCAC ACTGATAA ACATTTGGTC chrV:385666-385746 16 2.17e-05 CTGATAAGCT ACTGATAA CGAAATTCAA chrIV:9593621-9593701 30 2.17e-05 GTGTCGATCA ACTGATAA GAGGCCTCAA chrV:9507122-9507202 1 2.17e-05 . ACTGATAA CATCAATTCC chrI:516796-516876 38 4.38e-05 CAGtagtagt agtgataa ttgatttgat chrV:2710049-2710129 27 4.38e-05 ACAGGATCCT AGTGATAA AAGTTAAGAG chrIV:9112205-9112285 26 4.38e-05 GTTGCATTTC AGTGATAA GAGAAAGCAA chrIV:6655906-6655986 52 4.38e-05 TGACGCTGTC AGTGATAA ACTTGATTAT chrI:12504985-12505065 37 4.38e-05 TAAATTAAAA AGTGATAA GGAGTAAAGT chrX:2385731-2385811 68 6.18e-05 CCGGATAGCG GCTGATAA TATGT chrII:6615424-6615504 6 6.18e-05 CGAAT GCTGATAA AAGCAACCAA chrIV:6082400-6082480 51 6.18e-05 GTAGCGACTG GCTGATAA GATTGCCACG chrIII:1682432-1682512 68 6.18e-05 ATAACGGATA GCTGATAA CAATT chrX:1117389-1117469 14 6.18e-05 CCAACGTGTT GCTGATAA CGTTTGTACC chrX:10628599-10628679 71 6.18e-05 GCACTCCCCA GCTGATAA CA chrII:7931978-7932058 30 8.01e-05 GAAGAAGCAA GGTGATAA ATCGATCAGA chrII:14838764-14838844 33 8.01e-05 GTGTAGAACT GGTGATAA ATACATTGAT chrV:14212983-14213063 72 9.82e-05 AGGAGAAATG ACTGATGA A chrII:11181428-11181508 30 1.16e-04 TATATTTTCT AGTGATGA AAGTACACTC chrV:13659352-13659432 73 1.16e-04 TGAAAGAACG AGTGATGA chrII:14665237-14665317 3 1.16e-04 AA AGTGATGA TAAGGCATTG chrX:5630102-5630182 34 1.16e-04 GTGTCTCCAC AGTGATGA TATTATAAGA chrX:4504457-4504537 20 1.31e-04 TGTCTTTCGA GCTGATGA AACACAACAA chrX:11720257-11720337 38 1.31e-04 TTTGTAAATG GCTGATGA TCAAAACGGG chrII:3437278-3437358 68 1.73e-04 CATTGATCCA GGTGATGA TGGTG chrV:12199607-12199687 19 1.73e-04 CCCCAATAGC AATGATAA GAAACGGCGT chrV:3610891-3610971 34 1.73e-04 GGATATGGGA AATGATAA GGAAGGTAAT chrI:11783618-11783698 44 1.73e-04 tgggggtgat ggtgATGA TCGGAGAATC chrIII:2676211-2676291 68 1.73e-04 GTGTTGTATA AATGATAA CGCTT chrII:7776870-7776950 66 1.99e-04 GTTCACCTTC ATTGATAA GATATTG chrIII:6395880-6395960 72 1.99e-04 GTAATGAAAG ATTGATAA A chrX:11992958-11993038 26 2.21e-04 CATTTCATTG GATGATAA GTGGGACAGC chrII:13145346-13145426 56 2.21e-04 TCACGATTTT GATGATAA AGATTGAAGT chrX:13368436-13368516 48 2.42e-04 GGGTGACTGG GTTGATAA TGATACCGAA chrII:4469175-4469255 49 2.42e-04 TTGCCCAATT GTTGATAA AATTCGAACA chrIV:1209479-1209559 63 2.42e-04 TGATGATGAT GTTGATAA CAACGTGTTC chrII:13861087-13861167 26 2.64e-04 TTGTCATGTG AATGATGA AAAATGAGTT chrIII:8926643-8926723 9 2.64e-04 ACGTGTAG AATGATGA GAAATATAGT chrV:10190387-10190467 65 2.85e-04 GGGTCGTTGA ATTGATGA AACCACGT chrIV:5706731-5706811 67 2.85e-04 TGAAGGAAAC ATTGATGA GAGGAA chrIII:10489173-10489253 67 3.03e-04 AGGGCATGGA GATGATGA CACCTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RVTGATAA MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:14993802-14993882 2.2e-05 52_[+4]_20 chrV:5647498-5647578 2.2e-05 27_[+4]_45 chrV:6211618-6211698 2.2e-05 36_[+4]_36 chrV:385666-385746 2.2e-05 15_[+4]_57 chrIV:9593621-9593701 2.2e-05 29_[+4]_43 chrV:9507122-9507202 2.2e-05 [+4]_72 chrI:516796-516876 4.4e-05 37_[+4]_35 chrV:2710049-2710129 4.4e-05 26_[+4]_46 chrIV:9112205-9112285 4.4e-05 25_[+4]_47 chrIV:6655906-6655986 4.4e-05 51_[+4]_21 chrI:12504985-12505065 4.4e-05 36_[+4]_36 chrX:2385731-2385811 6.2e-05 67_[+4]_5 chrII:6615424-6615504 6.2e-05 5_[+4]_67 chrIV:6082400-6082480 6.2e-05 50_[+4]_22 chrIII:1682432-1682512 6.2e-05 67_[+4]_5 chrX:1117389-1117469 6.2e-05 13_[+4]_59 chrX:10628599-10628679 6.2e-05 70_[+4]_2 chrII:7931978-7932058 8e-05 29_[+4]_43 chrII:14838764-14838844 8e-05 32_[+4]_40 chrV:14212983-14213063 9.8e-05 71_[+4]_1 chrII:11181428-11181508 0.00012 29_[+4]_43 chrV:13659352-13659432 0.00012 72_[+4] chrII:14665237-14665317 0.00012 2_[+4]_70 chrX:5630102-5630182 0.00012 33_[+4]_39 chrX:4504457-4504537 0.00013 19_[+4]_53 chrX:11720257-11720337 0.00013 37_[+4]_35 chrII:3437278-3437358 0.00017 67_[+4]_5 chrV:12199607-12199687 0.00017 18_[+4]_54 chrV:3610891-3610971 0.00017 33_[+4]_39 chrI:11783618-11783698 0.00017 43_[+4]_29 chrIII:2676211-2676291 0.00017 67_[+4]_5 chrII:7776870-7776950 0.0002 65_[+4]_7 chrIII:6395880-6395960 0.0002 71_[+4]_1 chrX:11992958-11993038 0.00022 25_[+4]_47 chrII:13145346-13145426 0.00022 55_[+4]_17 chrX:13368436-13368516 0.00024 47_[+4]_25 chrII:4469175-4469255 0.00024 48_[+4]_24 chrIV:1209479-1209559 0.00024 62_[+4]_10 chrII:13861087-13861167 0.00026 25_[+4]_47 chrIII:8926643-8926723 0.00026 8_[+4]_64 chrV:10190387-10190467 0.00029 64_[+4]_8 chrIV:5706731-5706811 0.00029 66_[+4]_6 chrIII:10489173-10489253 0.0003 66_[+4]_6 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RVTGATAA MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RVTGATAA width=8 seqs=43 chrV:14993802-14993882 ( 53) ACTGATAA 1 chrV:5647498-5647578 ( 28) ACTGATAA 1 chrV:6211618-6211698 ( 37) ACTGATAA 1 chrV:385666-385746 ( 16) ACTGATAA 1 chrIV:9593621-9593701 ( 30) ACTGATAA 1 chrV:9507122-9507202 ( 1) ACTGATAA 1 chrI:516796-516876 ( 38) AGTGATAA 1 chrV:2710049-2710129 ( 27) AGTGATAA 1 chrIV:9112205-9112285 ( 26) AGTGATAA 1 chrIV:6655906-6655986 ( 52) AGTGATAA 1 chrI:12504985-12505065 ( 37) AGTGATAA 1 chrX:2385731-2385811 ( 68) GCTGATAA 1 chrII:6615424-6615504 ( 6) GCTGATAA 1 chrIV:6082400-6082480 ( 51) GCTGATAA 1 chrIII:1682432-1682512 ( 68) GCTGATAA 1 chrX:1117389-1117469 ( 14) GCTGATAA 1 chrX:10628599-10628679 ( 71) GCTGATAA 1 chrII:7931978-7932058 ( 30) GGTGATAA 1 chrII:14838764-14838844 ( 33) GGTGATAA 1 chrV:14212983-14213063 ( 72) ACTGATGA 1 chrII:11181428-11181508 ( 30) AGTGATGA 1 chrV:13659352-13659432 ( 73) AGTGATGA 1 chrII:14665237-14665317 ( 3) AGTGATGA 1 chrX:5630102-5630182 ( 34) AGTGATGA 1 chrX:4504457-4504537 ( 20) GCTGATGA 1 chrX:11720257-11720337 ( 38) GCTGATGA 1 chrII:3437278-3437358 ( 68) GGTGATGA 1 chrV:12199607-12199687 ( 19) AATGATAA 1 chrV:3610891-3610971 ( 34) AATGATAA 1 chrI:11783618-11783698 ( 44) GGTGATGA 1 chrIII:2676211-2676291 ( 68) AATGATAA 1 chrII:7776870-7776950 ( 66) ATTGATAA 1 chrIII:6395880-6395960 ( 72) ATTGATAA 1 chrX:11992958-11993038 ( 26) GATGATAA 1 chrII:13145346-13145426 ( 56) GATGATAA 1 chrX:13368436-13368516 ( 48) GTTGATAA 1 chrII:4469175-4469255 ( 49) GTTGATAA 1 chrIV:1209479-1209559 ( 63) GTTGATAA 1 chrII:13861087-13861167 ( 26) AATGATGA 1 chrIII:8926643-8926723 ( 9) AATGATGA 1 chrV:10190387-10190467 ( 65) ATTGATGA 1 chrIV:5706731-5706811 ( 67) ATTGATGA 1 chrIII:10489173-10489253 ( 67) GATGATGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RVTGATAA MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.73438 E= 6.6e-007 107 -1207 86 -1207 -57 62 39 -71 -1207 -1207 -1207 191 -1207 -1207 212 -1207 185 -1207 -1207 -1207 -1207 -1207 -1207 191 129 -1207 50 -1207 185 -1207 -1207 -1207 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RVTGATAA MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 43 E= 6.6e-007 0.581395 0.000000 0.418605 0.000000 0.186047 0.348837 0.302326 0.162791 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.674419 0.000000 0.325581 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RVTGATAA MEME-4 regular expression -------------------------------------------------------------------------------- [AG][CG]TGAT[AG]A -------------------------------------------------------------------------------- Time 16.88 secs. ******************************************************************************** ******************************************************************************** MOTIF CAGCAGCA MEME-5 width = 8 sites = 9 llr = 94 E-value = 4.8e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif CAGCAGCA MEME-5 Description -------------------------------------------------------------------------------- Simplified A :a::a::7 pos.-specific C a::a::a: probability G ::a::a:1 matrix T :::::::2 bits 2.1 * ** ** 1.9 ******* 1.7 ******* 1.5 ******* Relative 1.3 ******* Entropy 1.1 ******* (15.0 bits) 0.9 ******* 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CAGCAGCA consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCAGCA MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIV:6082400-6082480 4 1.32e-05 TTG CAGCAGCA GGTTGTCCGA chrX:17540126-17540206 33 1.32e-05 GACAGCAGGG CAGCAGCA AAGATGTACG chrV:1164349-1164429 71 1.32e-05 CTAGAAGAAG CAGCAGCA AG chrII:11705984-11706064 34 1.32e-05 GAGGCAGCCG CAGCAGCA AAATACAGTG chrV:11265667-11265747 31 1.32e-05 ATCAGTAATA CAGCAGCA GCACATGGCA chrIII:5434988-5435068 45 1.32e-05 GGCGGGAACC CAGCAGCA TGCTTGTAGT chrX:13347389-13347469 11 2.58e-05 GCTACAACAT CAGCAGCT GAGCAAGTGA chrIII:10167797-10167877 11 2.58e-05 TCTAAGCGAC CAGCAGCT ATCCACAGCG chrI:14465308-14465388 12 3.67e-05 CAAAGTAGGT CAGCAGCG GCGGCAGTAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCAGCA MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:6082400-6082480 1.3e-05 3_[+5]_69 chrX:17540126-17540206 1.3e-05 32_[+5]_40 chrV:1164349-1164429 1.3e-05 70_[+5]_2 chrII:11705984-11706064 1.3e-05 33_[+5]_39 chrV:11265667-11265747 1.3e-05 30_[+5]_42 chrIII:5434988-5435068 1.3e-05 44_[+5]_28 chrX:13347389-13347469 2.6e-05 10_[+5]_62 chrIII:10167797-10167877 2.6e-05 10_[+5]_62 chrI:14465308-14465388 3.7e-05 11_[+5]_61 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCAGCA MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CAGCAGCA width=8 seqs=9 chrIV:6082400-6082480 ( 4) CAGCAGCA 1 chrX:17540126-17540206 ( 33) CAGCAGCA 1 chrV:1164349-1164429 ( 71) CAGCAGCA 1 chrII:11705984-11706064 ( 34) CAGCAGCA 1 chrV:11265667-11265747 ( 31) CAGCAGCA 1 chrIII:5434988-5435068 ( 45) CAGCAGCA 1 chrX:13347389-13347469 ( 11) CAGCAGCT 1 chrIII:10167797-10167877 ( 11) CAGCAGCT 1 chrI:14465308-14465388 ( 12) CAGCAGCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCAGCA MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.1193 E= 4.8e+003 -982 214 -982 -982 185 -982 -982 -982 -982 -982 212 -982 -982 214 -982 -982 185 -982 -982 -982 -982 -982 212 -982 -982 214 -982 -982 127 -982 -105 -26 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCAGCA MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 9 E= 4.8e+003 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.666667 0.000000 0.111111 0.222222 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCAGCA MEME-5 regular expression -------------------------------------------------------------------------------- CAGCAGC[AT] -------------------------------------------------------------------------------- Time 20.22 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:11040757-11040837 1.30e-01 44_[+1(5.02e-05)]_28 chrX:13846182-13846262 5.34e-02 50_[+1(7.27e-05)]_22 chrIII:5434988-5435068 7.70e-03 44_[+5(1.32e-05)]_28 chrI:7072433-7072513 5.49e-03 47_[+1(1.05e-05)]_25 chrII:9485452-9485532 3.30e-01 80 chrV:3693782-3693862 4.84e-01 80 chrI:429300-429380 1.35e-01 80 chrV:19755403-19755483 1.69e-02 67_[+3(2.96e-05)]_5 chrIII:9454844-9454924 3.63e-02 80 chrV:15774100-15774180 2.24e-04 13_[+1(1.05e-05)]_49_[+3(2.96e-05)]_\ 2 chrIII:2676211-2676291 1.15e-01 80 chrI:1845036-1845116 3.31e-03 30_[+1(3.54e-05)]_33_[+3(1.33e-05)]_\ 1 chrIV:2195778-2195858 4.91e-01 80 chrI:7243921-7244001 3.31e-02 80 chrV:11265667-11265747 4.21e-03 30_[+5(1.32e-05)]_42 chrII:8359473-8359553 9.25e-01 80 chrIII:6216117-6216197 6.41e-02 80 chrV:1829988-1830068 4.90e-01 80 chrIII:6395880-6395960 1.27e-03 10_[+1(1.05e-05)]_62 chrIV:12711210-12711290 6.45e-02 54_[+1(1.05e-05)]_18 chrV:2212076-2212156 2.12e-03 67_[+3(1.33e-05)]_5 chrI:11491462-11491542 1.04e-01 80 chrII:11705984-11706064 6.81e-04 33_[+5(1.32e-05)]_39 chrIII:5964536-5964616 7.22e-03 68_[+1(5.02e-05)]_4 chrX:12449434-12449514 3.49e-01 80 chrIV:523800-523880 1.27e-03 31_[+3(2.96e-05)]_41 chrIV:5706731-5706811 6.62e-02 80 chrIII:8732100-8732180 2.17e-02 48_[+1(1.05e-05)]_24 chrII:7273658-7273738 1.05e-01 80 chrI:12504985-12505065 1.05e-03 36_[+4(4.38e-05)]_14_[+1(2.26e-05)]_\ 14 chrI:9244715-9244795 9.12e-01 80 chrIII:10167797-10167877 3.88e-02 10_[+5(2.58e-05)]_62 chrII:4392653-4392733 4.25e-02 80 chrX:6649738-6649818 1.71e-01 80 chrI:11783618-11783698 8.07e-02 80 chrIV:10682324-10682404 6.93e-02 26_[+1(5.02e-05)]_46 chrV:9507122-9507202 1.89e-02 [+4(2.17e-05)]_72 chrII:13618011-13618091 3.56e-01 80 chrX:10628599-10628679 9.08e-04 70_[+4(6.18e-05)]_2 chrI:12055285-12055365 2.72e-02 38_[+1(3.54e-05)]_34 chrII:13333508-13333588 8.25e-01 80 chrV:13410804-13410884 3.10e-01 80 chrII:10289116-10289196 4.04e-01 80 chrIII:10236499-10236579 9.48e-01 80 chrX:10431161-10431241 6.51e-02 80 chrV:12113848-12113928 6.40e-01 80 chrX:16163559-16163639 1.22e-02 41_[+1(2.26e-05)]_31 chrX:10231065-10231145 3.24e-02 19_[+1(2.26e-05)]_53 chrV:1164349-1164429 2.29e-02 70_[+5(1.32e-05)]_2 chrIII:7292730-7292810 3.03e-01 80 chrV:5027818-5027898 1.75e-01 80 chrX:16290710-16290790 6.18e-04 40_[+1(2.26e-05)]_32 chrX:13760212-13760292 1.79e-01 80 chrII:14838764-14838844 5.81e-03 32_[+4(8.01e-05)]_20_[+4(9.82e-05)]_\ 12 chrIII:11380728-11380808 1.57e-02 80 chrIV:9593621-9593701 2.21e-03 15_[+1(2.26e-05)]_6_[+4(2.17e-05)]_\ 43 chrIV:8452041-8452121 2.88e-01 80 chrII:1244557-1244637 7.04e-01 80 chrIII:5096881-5096961 5.55e-02 30_[+1(3.54e-05)]_42 chrII:4090930-4091010 4.68e-01 80 chrX:12934862-12934942 3.62e-01 80 chrX:13347389-13347469 1.33e-02 10_[+5(2.58e-05)]_62 chrII:12615575-12615655 1.33e-01 80 chrIV:7233575-7233655 1.46e-02 47_[+2(7.35e-05)]_25 chrIII:8133514-8133594 6.77e-01 80 chrIV:1209479-1209559 1.14e-02 80 chrX:5346499-5346579 3.40e-01 80 chrIV:7011871-7011951 1.48e-03 63_[+3(4.31e-05)]_9 chrII:1315328-1315408 7.89e-03 18_[+1(2.26e-05)]_12_[+2(7.35e-05)]_\ 34 chrIV:633732-633812 6.11e-01 80 chrII:10139380-10139460 8.58e-01 80 chrIV:8450682-8450762 7.97e-02 80 chrIII:8504350-8504430 5.54e-01 80 chrIV:17387734-17387814 1.08e-03 5_[+4(2.17e-05)]_67 chrII:10925902-10925982 2.18e-01 80 chrX:15280446-15280526 1.01e-01 80 chrII:9076677-9076757 7.85e-03 5_[+5(4.75e-05)]_67 chrX:16625246-16625326 7.72e-01 80 chrII:4469175-4469255 4.40e-02 80 chrV:12296854-12296934 4.16e-02 34_[+1(1.05e-05)]_38 chrIII:12860307-12860387 6.54e-01 80 chrX:5476492-5476572 1.32e-01 80 chrII:11830791-11830871 2.70e-01 80 chrIV:12641597-12641677 5.14e-02 68_[+2(7.35e-05)]_4 chrI:3861554-3861634 1.46e-02 7_[+1(7.27e-05)]_65 chrX:5630102-5630182 7.99e-02 80 chrIII:10489173-10489253 2.75e-01 80 chrX:11324387-11324467 1.43e-01 80 chrII:7931978-7932058 6.99e-03 29_[+4(8.01e-05)]_43 chrII:112404-112484 1.95e-03 3_[+2(3.38e-05)]_69 chrV:3610891-3610971 2.62e-02 80 chrII:5047442-5047522 1.02e-01 80 chrV:16390834-16390914 2.46e-02 80 chrV:13414862-13414942 7.05e-01 80 chrIV:13394853-13394933 1.87e-01 80 chrV:19846357-19846437 4.47e-01 80 chrX:12781885-12781965 4.61e-01 80 chrV:11797652-11797732 2.06e-01 80 chrV:10886509-10886589 1.29e-01 80 chrIV:1819120-1819200 1.29e-02 80 chrV:13376781-13376861 2.32e-01 80 chrII:5142233-5142313 9.67e-03 34_[+1(5.02e-05)]_38 chrI:11014219-11014299 2.13e-01 80 chrIII:10170380-10170460 2.80e-01 80 chrII:9231380-9231460 2.02e-01 80 chrIV:6655906-6655986 1.71e-01 1_[+4(4.38e-05)]_42_[+4(4.38e-05)]_\ 21 chrII:7695847-7695927 9.41e-02 47_[+1(3.54e-05)]_25 chrX:461245-461325 1.83e-02 3_[+2(3.38e-05)]_69 chrII:6448907-6448987 5.34e-01 80 chrI:1778855-1778935 7.27e-01 80 chrIV:300446-300526 2.32e-01 80 chrII:9189771-9189851 2.62e-01 80 chrIV:12366904-12366984 8.83e-01 80 chrIV:17171911-17171991 2.73e-01 80 chrI:4918269-4918349 8.19e-03 66_[+1(1.05e-05)]_6 chrIII:8772594-8772674 1.80e-02 80 chrV:2135545-2135625 1.73e-01 80 chrX:15487430-15487510 1.31e-01 66_[+2(3.38e-05)]_6 chrII:12854951-12855031 5.82e-01 80 chrV:12919863-12919943 7.58e-01 80 chrX:5645827-5645907 1.88e-01 80 chrIII:3349242-3349322 5.87e-01 80 chrII:4874617-4874697 2.18e-01 80 chrIV:9477273-9477353 5.66e-01 80 chrII:13174591-13174671 1.56e-01 80 chrII:14665237-14665317 1.94e-01 80 chrI:1230536-1230616 4.06e-03 35_[+1(3.54e-05)]_37 chrIV:4475804-4475884 6.06e-02 23_[+1(3.54e-05)]_49 chrX:2108321-2108401 4.64e-02 52_[+1(7.27e-05)]_20 chrII:14234845-14234925 6.54e-02 21_[+1(5.02e-05)]_51 chrV:13659352-13659432 1.87e-02 80 chrV:8660665-8660745 7.71e-01 80 chrX:15424183-15424263 2.50e-01 80 chrX:17197974-17198054 5.12e-01 80 chrI:4334515-4334595 1.16e-01 66_[+2(7.35e-05)]_6 chrII:13145346-13145426 1.25e-01 80 chrII:12053659-12053739 2.08e-01 80 chrIII:11811953-11812033 4.05e-01 80 chrI:6974319-6974399 9.00e-05 13_[+1(5.02e-05)]_39_[+2(3.38e-05)]_\ 12 chrI:10231825-10231905 3.07e-02 80 chrI:14465308-14465388 1.27e-01 11_[+5(3.67e-05)]_61 chrIV:1652868-1652948 5.92e-04 12_[+3(1.33e-05)]_44_[+1(3.54e-05)]_\ 8 chrII:11928951-11929031 1.07e-01 80 chrV:19524788-19524868 3.87e-03 37_[+1(1.05e-05)]_35 chrIII:12232188-12232268 3.41e-02 28_[+2(7.35e-05)]_44 chrII:6449783-6449863 2.91e-01 80 chrIII:8926643-8926723 1.08e-01 80 chrX:11720257-11720337 2.38e-01 80 chrI:9541246-9541326 8.20e-01 80 chrX:8384824-8384904 4.88e-01 80 chrV:11680484-11680564 3.36e-01 80 chrII:10860995-10861075 1.97e-03 80 chrI:3899826-3899906 3.34e-01 80 chrX:3824620-3824700 1.81e-02 80 chrX:460470-460550 9.14e-01 80 chrII:8765280-8765360 8.10e-02 28_[+1(3.54e-05)]_44 chrII:11220906-11220986 1.09e-01 80 chrI:8013471-8013551 2.57e-02 36_[+2(3.38e-05)]_36 chrV:20832036-20832116 7.11e-01 80 chrIV:9564155-9564235 7.44e-02 16_[+1(1.05e-05)]_1_[+1(1.05e-05)]_\ 47 chrIV:7497363-7497443 2.23e-01 80 chrV:385666-385746 2.22e-03 4_[+4(2.17e-05)]_3_[+4(2.17e-05)]_\ 10_[+1(3.54e-05)]_39 chrV:4820808-4820888 2.25e-02 6_[+1(6.06e-05)]_66 chrII:8822856-8822936 1.83e-01 80 chrIII:9698786-9698866 2.76e-02 29_[+2(3.38e-05)]_43 chrX:1422307-1422387 3.71e-01 80 chrV:8307192-8307272 1.08e-01 80 chrV:12199607-12199687 9.23e-03 80 chrIV:10858749-10858829 2.72e-02 10_[+1(5.02e-05)]_62 chrII:9233912-9233992 2.69e-02 22_[+2(7.35e-05)]_31_[+2(3.38e-05)]_\ 11 chrIV:10421395-10421475 5.91e-01 80 chrII:9656385-9656465 1.65e-01 33_[+1(7.27e-05)]_39 chrV:10190387-10190467 8.10e-03 5_[+3(1.33e-05)]_67 chrV:8026510-8026590 2.07e-02 51_[+1(2.26e-05)]_21 chrIII:11087584-11087664 1.45e-02 61_[+2(7.35e-05)]_11 chrII:8329697-8329777 1.03e-03 5_[+1(1.05e-05)]_41_[+2(3.38e-05)]_\ 18 chrX:1117389-1117469 3.09e-02 13_[+4(6.18e-05)]_59 chrX:17070646-17070726 3.46e-02 41_[+1(6.06e-05)]_31 chrV:6211618-6211698 1.73e-02 36_[+4(2.17e-05)]_36 chrI:10174887-10174967 4.93e-02 80 chrV:6513498-6513578 1.11e-01 80 chrI:4304020-4304100 6.45e-01 80 chrI:4333951-4334031 1.25e-01 9_[+2(3.38e-05)]_[+2(7.35e-05)]_55 chrIII:844148-844228 3.49e-01 80 chrI:14993159-14993239 3.26e-01 80 chrV:12879535-12879615 4.96e-01 80 chrX:16627166-16627246 2.88e-01 80 chrI:13501071-13501151 1.37e-01 9_[+1(3.54e-05)]_63 chrII:3437278-3437358 6.71e-03 18_[+3(1.33e-05)]_25_[+3(5.87e-05)]_\ 21 chrX:10054524-10054604 3.94e-03 80 chrV:8682865-8682945 1.02e-02 66_[+1(6.06e-05)]_6 chrII:8264756-8264836 4.28e-01 80 chrIV:8174983-8175063 1.05e-01 80 chrX:16871461-16871541 1.98e-01 14_[+1(3.54e-05)]_58 chrIII:8688810-8688890 2.93e-01 80 chrII:7404159-7404239 7.60e-01 80 chrIV:9112205-9112285 2.26e-02 25_[+4(4.38e-05)]_47 chrX:17540126-17540206 7.18e-03 32_[+5(1.32e-05)]_40 chrV:2710049-2710129 4.16e-03 26_[+4(4.38e-05)]_25_[+1(2.26e-05)]_\ 5_[+4(8.01e-05)] chrIII:1053226-1053306 4.28e-02 54_[+3(1.33e-05)]_18 chrX:11992958-11993038 5.30e-02 80 chrI:14320487-14320567 3.98e-01 80 chrX:4504457-4504537 5.14e-04 4_[+1(2.26e-05)]_68 chrX:1578794-1578874 6.42e-02 80 chrIV:5860866-5860946 5.37e-02 80 chrV:6970203-6970283 3.34e-01 80 chrV:5647498-5647578 4.73e-04 27_[+4(2.17e-05)]_28_[+2(7.35e-05)]_\ 9 chrIV:1657217-1657297 5.88e-03 52_[+3(1.33e-05)]_20 chrV:11221963-11222043 4.35e-02 69_[+2(3.38e-05)]_3 chrX:16793643-16793723 7.73e-02 14_[+3(4.31e-05)]_58 chrII:14673835-14673915 7.50e-01 80 chrIV:11957241-11957321 4.30e-02 17_[+1(3.54e-05)]_55 chrV:14993802-14993882 1.40e-02 52_[+4(2.17e-05)]_20 chrIII:7722546-7722626 3.59e-02 80 chrV:9324323-9324403 1.63e-02 80 chrX:11264904-11264984 4.84e-01 80 chrV:14212983-14213063 7.48e-02 71_[+4(9.82e-05)]_1 chrX:10761114-10761194 1.61e-01 25_[+1(5.02e-05)]_47 chrX:6876428-6876508 8.14e-01 80 chrX:6240422-6240502 7.41e-01 80 chrX:13368436-13368516 2.93e-01 80 chrI:2835394-2835474 7.33e-02 9_[+2(3.38e-05)]_63 chrV:8409821-8409901 1.78e-01 80 chrIV:1820426-1820506 3.70e-01 80 chrX:5524359-5524439 5.00e-02 8_[+2(3.38e-05)]_64 chrII:11181428-11181508 1.18e-02 80 chrX:381130-381210 8.63e-02 39_[+2(7.35e-05)]_33 chrIII:1682432-1682512 1.53e-03 43_[+1(1.05e-05)]_16_[+4(6.18e-05)]_\ 5 chrIV:6082400-6082480 9.84e-06 3_[+5(1.32e-05)]_39_[+4(6.18e-05)]_\ 5_[+1(1.05e-05)]_9 chrX:4520139-4520219 4.47e-01 80 chrII:1240623-1240703 2.13e-01 80 chrIV:13413151-13413231 2.20e-02 54_[+3(1.33e-05)]_18 chrIII:9698123-9698203 9.38e-01 80 chrIII:6179191-6179271 8.33e-01 80 chrII:7776870-7776950 7.69e-03 80 chrI:516796-516876 6.61e-02 37_[+4(4.38e-05)]_35 chrX:11499968-11500048 2.11e-01 80 chrIV:9913135-9913215 3.14e-01 10_[+2(7.35e-05)]_62 chrI:1540542-1540622 1.58e-01 80 chrX:5338124-5338204 6.92e-01 80 chrX:11345138-11345218 8.03e-01 80 chrII:6615424-6615504 1.10e-01 5_[+4(6.18e-05)]_67 chrII:11502123-11502203 3.87e-01 80 chrIV:17174237-17174317 6.33e-01 80 chrII:13861087-13861167 5.55e-02 80 chrI:3724789-3724869 9.82e-01 80 chrV:14510902-14510982 2.00e-02 80 chrX:2385731-2385811 2.36e-02 67_[+4(6.18e-05)]_5 chrI:2064815-2064895 3.80e-02 19_[+1(2.26e-05)]_53 chrV:5410820-5410900 4.18e-03 43_[+1(2.26e-05)]_29 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c28n02.farnam.hpc.yale.internal ********************************************************************************