******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/worm/fasta/RankLinear2.0_40/mxl-1.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrIII:12496628-12496708 1.0000 80 chrIII:2031334-2031414 1.0000 80 chrX:11933732-11933812 1.0000 80 chrX:7507301-7507381 1.0000 80 chrX:5451170-5451250 1.0000 80 chrX:487811-487891 1.0000 80 chrI:10570018-10570098 1.0000 80 chrI:10436896-10436976 1.0000 80 chrV:18412484-18412564 1.0000 80 chrIV:12208054-12208134 1.0000 80 chrI:2310058-2310138 1.0000 80 chrI:6135831-6135911 1.0000 80 chrI:111279-111359 1.0000 80 chrIII:8445341-8445421 1.0000 80 chrV:8499534-8499614 1.0000 80 chrV:7548689-7548769 1.0000 80 chrV:3455299-3455379 1.0000 80 chrX:7898280-7898360 1.0000 80 chrX:13283675-13283755 1.0000 80 chrX:10124437-10124517 1.0000 80 chrIV:11146088-11146168 1.0000 80 chrX:4410683-4410763 1.0000 80 chrIII:9814318-9814398 1.0000 80 chrIV:10311273-10311353 1.0000 80 chrV:6335425-6335505 1.0000 80 chrI:7279373-7279453 1.0000 80 chrM:1820-1900 1.0000 80 chrIII:1599097-1599177 1.0000 80 chrV:2664673-2664753 1.0000 80 chrIV:2664920-2665000 1.0000 80 chrV:265287-265367 1.0000 80 chrX:16618199-16618279 1.0000 80 chrI:2069346-2069426 1.0000 80 chrIV:6325801-6325881 1.0000 80 chrX:5713630-5713710 1.0000 80 chrIII:1603919-1603999 1.0000 80 chrV:15084926-15085006 1.0000 80 chrV:5592041-5592121 1.0000 80 chrIV:15933282-15933362 1.0000 80 chrIII:2032863-2032943 1.0000 80 chrV:859103-859183 1.0000 80 chrIV:2657450-2657530 1.0000 80 chrII:6591132-6591212 1.0000 80 chrV:12683325-12683405 1.0000 80 chrIV:13096831-13096911 1.0000 80 chrV:10127436-10127516 1.0000 80 chrV:3163278-3163358 1.0000 80 chrIII:8639380-8639460 1.0000 80 chrV:6783300-6783380 1.0000 80 chrX:10731973-10732053 1.0000 80 chrIV:7961862-7961942 1.0000 80 chrIII:4362597-4362677 1.0000 80 chrI:6051190-6051270 1.0000 80 chrM:3246-3326 1.0000 80 chrIV:16503757-16503837 1.0000 80 chrV:7733349-7733429 1.0000 80 chrV:6784598-6784678 1.0000 80 chrX:2526242-2526322 1.0000 80 chrII:14617078-14617158 1.0000 80 chrIV:5038951-5039031 1.0000 80 chrX:14437948-14438028 1.0000 80 chrI:3786850-3786930 1.0000 80 chrIV:386911-386991 1.0000 80 chrX:5709306-5709386 1.0000 80 chrI:7058870-7058950 1.0000 80 chrII:8187390-8187470 1.0000 80 chrV:13006990-13007070 1.0000 80 chrX:3212711-3212791 1.0000 80 chrX:11645613-11645693 1.0000 80 chrII:7003218-7003298 1.0000 80 chrI:4790708-4790788 1.0000 80 chrI:6320239-6320319 1.0000 80 chrIII:3249169-3249249 1.0000 80 chrV:18129040-18129120 1.0000 80 chrX:8640789-8640869 1.0000 80 chrII:14032938-14033018 1.0000 80 chrIII:2795543-2795623 1.0000 80 chrX:3969517-3969597 1.0000 80 chrX:11163348-11163428 1.0000 80 chrV:8496069-8496149 1.0000 80 chrIV:3296877-3296957 1.0000 80 chrI:14758834-14758914 1.0000 80 chrIV:14225040-14225120 1.0000 80 chrX:10148576-10148656 1.0000 80 chrX:7681003-7681083 1.0000 80 chrV:8247608-8247688 1.0000 80 chrV:10659419-10659499 1.0000 80 chrX:9237803-9237883 1.0000 80 chrV:2068882-2068962 1.0000 80 chrIV:15693410-15693490 1.0000 80 chrII:8441645-8441725 1.0000 80 chrIII:698935-699015 1.0000 80 chrX:6743287-6743367 1.0000 80 chrIV:1711145-1711225 1.0000 80 chrIV:16775203-16775283 1.0000 80 chrIV:2664212-2664292 1.0000 80 chrIII:9616047-9616127 1.0000 80 chrIII:11554743-11554823 1.0000 80 chrX:13781571-13781651 1.0000 80 chrI:10187457-10187537 1.0000 80 chrX:9024428-9024508 1.0000 80 chrI:9328378-9328458 1.0000 80 chrX:7378757-7378837 1.0000 80 chrIII:1163357-1163437 1.0000 80 chrIV:7083584-7083664 1.0000 80 chrX:8846750-8846830 1.0000 80 chrI:11584815-11584895 1.0000 80 chrV:16640540-16640620 1.0000 80 chrM:2987-3067 1.0000 80 chrX:9238850-9238930 1.0000 80 chrI:11977246-11977326 1.0000 80 chrX:8152546-8152626 1.0000 80 chrI:852193-852273 1.0000 80 chrI:12905968-12906048 1.0000 80 chrV:14092461-14092541 1.0000 80 chrIV:7499501-7499581 1.0000 80 chrV:16648810-16648890 1.0000 80 chrI:13658187-13658267 1.0000 80 chrIV:14889063-14889143 1.0000 80 chrI:7091516-7091596 1.0000 80 chrIII:6374269-6374349 1.0000 80 chrX:6286291-6286371 1.0000 80 chrI:6075908-6075988 1.0000 80 chrIV:2801162-2801242 1.0000 80 chrX:10667591-10667671 1.0000 80 chrX:11993489-11993569 1.0000 80 chrI:7704643-7704723 1.0000 80 chrIV:15289662-15289742 1.0000 80 chrX:16300617-16300697 1.0000 80 chrX:12337959-12338039 1.0000 80 chrV:16919895-16919975 1.0000 80 chrX:9373158-9373238 1.0000 80 chrIV:13795513-13795593 1.0000 80 chrV:8301324-8301404 1.0000 80 chrIV:16862047-16862127 1.0000 80 chrX:8838357-8838437 1.0000 80 chrX:5407457-5407537 1.0000 80 chrII:4228571-4228651 1.0000 80 chrX:16619275-16619355 1.0000 80 chrII:12542714-12542794 1.0000 80 chrV:20350555-20350635 1.0000 80 chrX:13308007-13308087 1.0000 80 chrX:16590322-16590402 1.0000 80 chrV:14231360-14231440 1.0000 80 chrIV:7344177-7344257 1.0000 80 chrIII:880075-880155 1.0000 80 chrX:7773823-7773903 1.0000 80 chrV:4891364-4891444 1.0000 80 chrV:9340433-9340513 1.0000 80 chrI:12601750-12601830 1.0000 80 chrX:16217983-16218063 1.0000 80 chrIV:12416975-12417055 1.0000 80 chrIII:1600816-1600896 1.0000 80 chrX:9622770-9622850 1.0000 80 chrIV:17088972-17089052 1.0000 80 chrV:6099038-6099118 1.0000 80 chrIV:13239590-13239670 1.0000 80 chrIV:1514596-1514676 1.0000 80 chrIII:12499363-12499443 1.0000 80 chrII:12541725-12541805 1.0000 80 chrI:4645500-4645580 1.0000 80 chrI:9624771-9624851 1.0000 80 chrIV:6906299-6906379 1.0000 80 chrV:6559698-6559778 1.0000 80 chrX:14228969-14229049 1.0000 80 chrIII:3112110-3112190 1.0000 80 chrIV:4047746-4047826 1.0000 80 chrX:3793501-3793581 1.0000 80 chrII:10527709-10527789 1.0000 80 chrX:9090654-9090734 1.0000 80 chrV:3686025-3686105 1.0000 80 chrX:14478866-14478946 1.0000 80 chrI:8490878-8490958 1.0000 80 chrX:4789100-4789180 1.0000 80 chrIV:13882652-13882732 1.0000 80 chrV:3585112-3585192 1.0000 80 chrII:11917673-11917753 1.0000 80 chrX:8608946-8609026 1.0000 80 chrM:2116-2196 1.0000 80 chrV:5667524-5667604 1.0000 80 chrIII:3869499-3869579 1.0000 80 chrIV:6481076-6481156 1.0000 80 chrIII:1743263-1743343 1.0000 80 chrII:11157798-11157878 1.0000 80 chrIV:4931000-4931080 1.0000 80 chrX:7323762-7323842 1.0000 80 chrX:8638849-8638929 1.0000 80 chrX:7176832-7176912 1.0000 80 chrV:15454417-15454497 1.0000 80 chrII:11880569-11880649 1.0000 80 chrV:16338578-16338658 1.0000 80 chrX:6867862-6867942 1.0000 80 chrX:10568505-10568585 1.0000 80 chrIV:13870303-13870383 1.0000 80 chrM:4632-4712 1.0000 80 chrII:8747298-8747378 1.0000 80 chrIV:11956452-11956532 1.0000 80 chrI:9051272-9051352 1.0000 80 chrX:13038914-13038994 1.0000 80 chrX:8939547-8939627 1.0000 80 chrIII:13464510-13464590 1.0000 80 chrX:13108878-13108958 1.0000 80 chrM:1199-1279 1.0000 80 chrII:8603679-8603759 1.0000 80 chrIV:16400920-16401000 1.0000 80 chrII:4902249-4902329 1.0000 80 chrX:7906514-7906594 1.0000 80 chrX:13653751-13653831 1.0000 80 chrI:6163413-6163493 1.0000 80 chrIV:14875403-14875483 1.0000 80 chrIV:866972-867052 1.0000 80 chrX:14162072-14162152 1.0000 80 chrIV:7506239-7506319 1.0000 80 chrI:13652769-13652849 1.0000 80 chrIII:1616772-1616852 1.0000 80 chrII:11756860-11756940 1.0000 80 chrIII:2811643-2811723 1.0000 80 chrM:4833-4913 1.0000 80 chrV:15547908-15547988 1.0000 80 chrII:2920914-2920994 1.0000 80 chrIV:5946902-5946982 1.0000 80 chrI:12229337-12229417 1.0000 80 chrIV:15932016-15932096 1.0000 80 chrX:10821335-10821415 1.0000 80 chrX:9078295-9078375 1.0000 80 chrX:7794562-7794642 1.0000 80 chrIII:13016096-13016176 1.0000 80 chrV:9318189-9318269 1.0000 80 chrIV:13701638-13701718 1.0000 80 chrI:11978762-11978842 1.0000 80 chrIII:10746546-10746626 1.0000 80 chrIV:16776088-16776168 1.0000 80 chrI:13953278-13953358 1.0000 80 chrIII:1419827-1419907 1.0000 80 chrX:9091523-9091603 1.0000 80 chrIV:14576569-14576649 1.0000 80 chrIV:2665772-2665852 1.0000 80 chrI:4911546-4911626 1.0000 80 chrIII:6805546-6805626 1.0000 80 chrX:13714819-13714899 1.0000 80 chrIV:16398345-16398425 1.0000 80 chrX:12889981-12890061 1.0000 80 chrI:6164226-6164306 1.0000 80 chrIV:16399159-16399239 1.0000 80 chrI:6136555-6136635 1.0000 80 chrII:6587697-6587777 1.0000 80 chrX:12347984-12348064 1.0000 80 chrX:13730480-13730560 1.0000 80 chrII:9211826-9211906 1.0000 80 chrX:2971590-2971670 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/worm/inference_raw/MEME/RankLinear2.0_40_mxl-1/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/worm/fasta/RankLinear2.0_40/mxl-1.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.274 C 0.22 G 0.227 T 0.279 Background letter frequencies (from file dataset with add-one prior applied): A 0.274 C 0.22 G 0.227 T 0.279 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GGRTTCGA MEME-1 width = 8 sites = 67 llr = 552 E-value = 1.9e-034 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGRTTCGA MEME-1 Description -------------------------------------------------------------------------------- Simplified A ::41::2a pos.-specific C :::1:a:: probability G 8a61::8: matrix T 1::7a::: bits 2.2 * 2.0 * * * 1.7 * * * 1.5 * **** Relative 1.3 ** **** Entropy 1.1 *** **** (11.9 bits) 0.9 *** **** 0.7 *** **** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GGGTTCGA consensus A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGRTTCGA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIV:16776088-16776168 49 1.25e-05 CATTCGACGG GGGTTCGA TTCCCCCCGA chrI:11978762-11978842 51 1.25e-05 CATAAGGCCG GGGTTCGA TTCCCCGCAA chrIV:14875403-14875483 16 1.25e-05 TTGCATTTAG GGGTTCGA TCCCGCATGG chrX:8939547-8939627 62 1.25e-05 TCGGGGGCGT GGGTTCGA ATCCCACTCT chrIV:13870303-13870383 11 1.25e-05 GTGGCAACGC GGGTTCGA TTCCAGCAGC chrX:10667591-10667671 51 1.25e-05 CACGCGGCCC GGGTTCGA TTCCCGGCAT chrI:11584815-11584895 22 1.25e-05 TGGTTGTCGC GGGTTCGA GCCCCGCATT chrX:8846750-8846830 20 1.25e-05 CATTCGACGG GGGTTCGA TTCCCCTCGA chrIV:16775203-16775283 28 1.25e-05 CATTCGACGG GGGTTCGA TTCCCCCCGA chrIV:5038951-5039031 19 1.25e-05 TTAAGGTCAG GGGTTCGA GTCCCCTAGG chrIII:4362597-4362677 24 1.25e-05 ATGGGTGCGT GGGTTCGA ATCCCACTTC chrIII:8639380-8639460 23 1.25e-05 ATGGGTGCGT GGGTTCGA ATCCCACTTC chrV:12683325-12683405 37 1.25e-05 GGTCCTGGCC GGGTTCGA ACCGGCGATC chrX:5713630-5713710 72 1.25e-05 TTAAGGTCAG GGGTTCGA G chrX:4410683-4410763 18 1.25e-05 CATAAGGCCG GGGTTCGA TTCCCCGCAA chrX:12347984-12348064 34 2.75e-05 GCACGAAGTG GGATTCGA ACCCACGCAC chrX:13038914-13038994 57 2.75e-05 GCCGTCCGCA GGATTCGA ACCTGCGCCC chrX:11163348-11163428 21 2.75e-05 GAAGAGAGTG GGATTCGA ACCCACGCCC chrX:8640789-8640869 16 2.75e-05 GACCACGGCA GGATTCGA ACCTACAATC chrX:10731973-10732053 27 2.75e-05 GACCACGGCA GGATTCGA ACCTACAATC chrIII:1603919-1603999 1 2.75e-05 . GGATTCGA ACCAGGGACC chrII:11157798-11157878 15 4.96e-05 GCCCAATGCG GGGCTCGA ACCCGCGACA chrX:14478866-14478946 22 4.96e-05 GCCCAATGCG GGGCTCGA ACCCGCGACA chrIII:3112110-3112190 45 4.96e-05 GATCACTGTG GGGCTCGA ACCCCGGTCT chrV:9318189-9318269 62 6.46e-05 GAGAAGTCTG GGGTTCAA TTCCCCATAC chrIV:15932016-15932096 43 6.46e-05 tgcgagaccc gggttcaa ttcccggccg chrX:7323762-7323842 40 6.46e-05 GAGAGGGCTG GGGTTCAA TTCCCCATAC chrIV:1514596-1514676 45 6.46e-05 TGCGAGACCC GGGTTCAA TTCCCGGCCG chrI:12601750-12601830 73 6.46e-05 GAGAGGGCTG GGGTTCAA chrX:13308007-13308087 72 6.46e-05 GAGAGGTCCC GGGTTCAA T chrX:9238850-9238930 63 6.46e-05 GAGAGGGCTG GGGTTCAA TTCCCCATAC chrX:9237803-9237883 57 6.46e-05 GAGAGGGCTG GGGTTCAA TTCCCCATAC chrI:6163413-6163493 69 7.47e-05 GCCGCCAGCA GGGGTCGA ACCT chrIII:1163357-1163437 8 7.47e-05 GCCAGCA GGGGTCGA ACCTGCGACC chrIII:6805546-6805626 72 9.00e-05 GAAAGGTTGG TGGTTCGA G chrIV:16400920-16401000 25 9.00e-05 GTGGCGACGC TGGTTCGA TTCCAGCCGC chrV:16338578-16338658 20 9.00e-05 GAAAGGTTGG TGGTTCGA GCCCACCCGG chrI:6135831-6135911 60 9.00e-05 CTTAGGTCAC TGGTTCGA ATCCGGTTCG chrIV:14576569-14576649 64 1.17e-04 GCGTTCGGGG GGAATCGA ACCCCCGTC chrX:10821335-10821415 3 1.17e-04 CG GGAATCGA ACCCGGGCCG chrV:16919895-16919975 73 1.17e-04 CGATTTCGAT GGAATCGA chrX:12337959-12338039 50 1.17e-04 GACCACGGCA GGACTCGA ACCTGCAATC chrX:11993489-11993569 43 1.17e-04 GCCTGCGGCT GGAATCGA ACCAGCGTCG chrV:14092461-14092541 5 1.17e-04 TAGG GGACTCGA GTGCCATGTT chrI:9328378-9328458 49 1.17e-04 GCGTTCGGGG GGAATCGA ACCCCCGTCG chrV:8496069-8496149 46 1.17e-04 GCCTCATGCT GGAATCGA ACCAGCGACC chrIII:2032863-2032943 45 1.17e-04 TCCGTTGCGG GGAATCGA ACCCCGGCCT chrV:2664673-2664753 5 1.17e-04 TGCT GGAATCGA ACCAGCGACC chrX:7898280-7898360 39 1.17e-04 TCCGTTGCGG GGAATCGA ACCCCGGCCT chrV:8499534-8499614 41 1.17e-04 GCCACCTAGG GGACTCGA ACCCCTGACC chrX:5451170-5451250 45 1.17e-04 GCCACCTAGG GGACTCGA ACCCCTGACC chrX:9091523-9091603 65 1.35e-04 TCGGGTCGCA GGATTCAA AGTCCTGA chrX:9090654-9090734 4 1.35e-04 GCA GGATTCAA AGTCCTGAGT chrIII:1743263-1743343 17 1.47e-04 GGGGACCCTT GGAGTCGA AGGCAAAAGC chrIV:7344177-7344257 17 1.47e-04 CTTTCGATCT GGAGTCGA ACGCGCTACC chrX:13730480-13730560 20 1.57e-04 TTCTAAATTG GGGTGCGA AGTTTCTAGG chrX:3969517-3969597 72 1.57e-04 TTCTCGCTTT GGGTGCGA G chrX:6867862-6867942 35 2.14e-04 TGCGGTTAGC GCGTTCGA TTAGCGTGCC chrIV:15289662-15289742 63 2.14e-04 CAATGGTAGC GCGTTCGA CTCCAGATCG chrI:6164226-6164306 16 2.42e-04 CCAAGGTCGC AGGTTCGA CCCCTGCTGG chrX:12889981-12890061 18 2.42e-04 TTGCCCGCGT AGGTTCGA TTCCTGCTCG chrI:14758834-14758914 58 2.42e-04 ATGTGCAGGT GGATGCGA ATCGTAGATG chrI:12229337-12229417 21 2.69e-04 CAGAGGTCGG TGGATCGA AACCACTCGC chrI:2069346-2069426 45 2.69e-04 CTGGCCAGTA TGGCTCGA ACTCGACGTT chrX:16300617-16300697 22 3.12e-04 AGAAGGTCGG CGGTTCGA TCCCGCCCGA chrV:6335425-6335505 22 3.12e-04 GAGAGGTCCC TGGTTCAA CTCCGGGTGC chrIII:1600816-1600896 16 3.71e-04 GAGAGCGCCA TGGGTCGA ACCACTGACC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGRTTCGA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:16776088-16776168 1.2e-05 48_[+1]_24 chrI:11978762-11978842 1.2e-05 50_[+1]_22 chrIV:14875403-14875483 1.2e-05 15_[+1]_57 chrX:8939547-8939627 1.2e-05 61_[+1]_11 chrIV:13870303-13870383 1.2e-05 10_[+1]_62 chrX:10667591-10667671 1.2e-05 50_[+1]_22 chrI:11584815-11584895 1.2e-05 21_[+1]_51 chrX:8846750-8846830 1.2e-05 19_[+1]_53 chrIV:16775203-16775283 1.2e-05 27_[+1]_45 chrIV:5038951-5039031 1.2e-05 18_[+1]_54 chrIII:4362597-4362677 1.2e-05 23_[+1]_49 chrIII:8639380-8639460 1.2e-05 22_[+1]_50 chrV:12683325-12683405 1.2e-05 36_[+1]_36 chrX:5713630-5713710 1.2e-05 71_[+1]_1 chrX:4410683-4410763 1.2e-05 17_[+1]_55 chrX:12347984-12348064 2.7e-05 33_[+1]_39 chrX:13038914-13038994 2.7e-05 56_[+1]_16 chrX:11163348-11163428 2.7e-05 20_[+1]_52 chrX:8640789-8640869 2.7e-05 15_[+1]_57 chrX:10731973-10732053 2.7e-05 26_[+1]_46 chrIII:1603919-1603999 2.7e-05 [+1]_72 chrII:11157798-11157878 5e-05 14_[+1]_58 chrX:14478866-14478946 5e-05 21_[+1]_51 chrIII:3112110-3112190 5e-05 44_[+1]_28 chrV:9318189-9318269 6.5e-05 61_[+1]_11 chrIV:15932016-15932096 6.5e-05 42_[+1]_30 chrX:7323762-7323842 6.5e-05 39_[+1]_33 chrIV:1514596-1514676 6.5e-05 44_[+1]_28 chrI:12601750-12601830 6.5e-05 72_[+1] chrX:13308007-13308087 6.5e-05 71_[+1]_1 chrX:9238850-9238930 6.5e-05 62_[+1]_10 chrX:9237803-9237883 6.5e-05 56_[+1]_16 chrI:6163413-6163493 7.5e-05 68_[+1]_4 chrIII:1163357-1163437 7.5e-05 7_[+1]_65 chrIII:6805546-6805626 9e-05 71_[+1]_1 chrIV:16400920-16401000 9e-05 24_[+1]_48 chrV:16338578-16338658 9e-05 19_[+1]_53 chrI:6135831-6135911 9e-05 59_[+1]_13 chrIV:14576569-14576649 0.00012 63_[+1]_9 chrX:10821335-10821415 0.00012 2_[+1]_70 chrV:16919895-16919975 0.00012 72_[+1] chrX:12337959-12338039 0.00012 49_[+1]_23 chrX:11993489-11993569 0.00012 42_[+1]_30 chrV:14092461-14092541 0.00012 4_[+1]_68 chrI:9328378-9328458 0.00012 48_[+1]_24 chrV:8496069-8496149 0.00012 45_[+1]_27 chrIII:2032863-2032943 0.00012 44_[+1]_28 chrV:2664673-2664753 0.00012 4_[+1]_68 chrX:7898280-7898360 0.00012 38_[+1]_34 chrV:8499534-8499614 0.00012 40_[+1]_32 chrX:5451170-5451250 0.00012 44_[+1]_28 chrX:9091523-9091603 0.00013 64_[+1]_8 chrX:9090654-9090734 0.00013 3_[+1]_69 chrIII:1743263-1743343 0.00015 16_[+1]_56 chrIV:7344177-7344257 0.00015 16_[+1]_56 chrX:13730480-13730560 0.00016 19_[+1]_53 chrX:3969517-3969597 0.00016 71_[+1]_1 chrX:6867862-6867942 0.00021 34_[+1]_38 chrIV:15289662-15289742 0.00021 62_[+1]_10 chrI:6164226-6164306 0.00024 15_[+1]_57 chrX:12889981-12890061 0.00024 17_[+1]_55 chrI:14758834-14758914 0.00024 57_[+1]_15 chrI:12229337-12229417 0.00027 20_[+1]_52 chrI:2069346-2069426 0.00027 44_[+1]_28 chrX:16300617-16300697 0.00031 21_[+1]_51 chrV:6335425-6335505 0.00031 21_[+1]_51 chrIII:1600816-1600896 0.00037 15_[+1]_57 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGRTTCGA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGRTTCGA width=8 seqs=67 chrIV:16776088-16776168 ( 49) GGGTTCGA 1 chrI:11978762-11978842 ( 51) GGGTTCGA 1 chrIV:14875403-14875483 ( 16) GGGTTCGA 1 chrX:8939547-8939627 ( 62) GGGTTCGA 1 chrIV:13870303-13870383 ( 11) GGGTTCGA 1 chrX:10667591-10667671 ( 51) GGGTTCGA 1 chrI:11584815-11584895 ( 22) GGGTTCGA 1 chrX:8846750-8846830 ( 20) GGGTTCGA 1 chrIV:16775203-16775283 ( 28) GGGTTCGA 1 chrIV:5038951-5039031 ( 19) GGGTTCGA 1 chrIII:4362597-4362677 ( 24) GGGTTCGA 1 chrIII:8639380-8639460 ( 23) GGGTTCGA 1 chrV:12683325-12683405 ( 37) GGGTTCGA 1 chrX:5713630-5713710 ( 72) GGGTTCGA 1 chrX:4410683-4410763 ( 18) GGGTTCGA 1 chrX:12347984-12348064 ( 34) GGATTCGA 1 chrX:13038914-13038994 ( 57) GGATTCGA 1 chrX:11163348-11163428 ( 21) GGATTCGA 1 chrX:8640789-8640869 ( 16) GGATTCGA 1 chrX:10731973-10732053 ( 27) GGATTCGA 1 chrIII:1603919-1603999 ( 1) GGATTCGA 1 chrII:11157798-11157878 ( 15) GGGCTCGA 1 chrX:14478866-14478946 ( 22) GGGCTCGA 1 chrIII:3112110-3112190 ( 45) GGGCTCGA 1 chrV:9318189-9318269 ( 62) GGGTTCAA 1 chrIV:15932016-15932096 ( 43) GGGTTCAA 1 chrX:7323762-7323842 ( 40) GGGTTCAA 1 chrIV:1514596-1514676 ( 45) GGGTTCAA 1 chrI:12601750-12601830 ( 73) GGGTTCAA 1 chrX:13308007-13308087 ( 72) GGGTTCAA 1 chrX:9238850-9238930 ( 63) GGGTTCAA 1 chrX:9237803-9237883 ( 57) GGGTTCAA 1 chrI:6163413-6163493 ( 69) GGGGTCGA 1 chrIII:1163357-1163437 ( 8) GGGGTCGA 1 chrIII:6805546-6805626 ( 72) TGGTTCGA 1 chrIV:16400920-16401000 ( 25) TGGTTCGA 1 chrV:16338578-16338658 ( 20) TGGTTCGA 1 chrI:6135831-6135911 ( 60) TGGTTCGA 1 chrIV:14576569-14576649 ( 64) GGAATCGA 1 chrX:10821335-10821415 ( 3) GGAATCGA 1 chrV:16919895-16919975 ( 73) GGAATCGA 1 chrX:12337959-12338039 ( 50) GGACTCGA 1 chrX:11993489-11993569 ( 43) GGAATCGA 1 chrV:14092461-14092541 ( 5) GGACTCGA 1 chrI:9328378-9328458 ( 49) GGAATCGA 1 chrV:8496069-8496149 ( 46) GGAATCGA 1 chrIII:2032863-2032943 ( 45) GGAATCGA 1 chrV:2664673-2664753 ( 5) GGAATCGA 1 chrX:7898280-7898360 ( 39) GGAATCGA 1 chrV:8499534-8499614 ( 41) GGACTCGA 1 chrX:5451170-5451250 ( 45) GGACTCGA 1 chrX:9091523-9091603 ( 65) GGATTCAA 1 chrX:9090654-9090734 ( 4) GGATTCAA 1 chrIII:1743263-1743343 ( 17) GGAGTCGA 1 chrIV:7344177-7344257 ( 17) GGAGTCGA 1 chrX:13730480-13730560 ( 20) GGGTGCGA 1 chrX:3969517-3969597 ( 72) GGGTGCGA 1 chrX:6867862-6867942 ( 35) GCGTTCGA 1 chrIV:15289662-15289742 ( 63) GCGTTCGA 1 chrI:6164226-6164306 ( 16) AGGTTCGA 1 chrX:12889981-12890061 ( 18) AGGTTCGA 1 chrI:14758834-14758914 ( 58) GGATGCGA 1 chrI:12229337-12229417 ( 21) TGGATCGA 1 chrI:2069346-2069426 ( 45) TGGCTCGA 1 chrX:16300617-16300697 ( 22) CGGTTCGA 1 chrV:6335425-6335505 ( 22) TGGTTCAA 1 chrIII:1600816-1600896 ( 16) TGGGTCGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGRTTCGA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.86712 E= 1.9e-034 -320 -388 188 -122 -1271 -288 210 -1271 39 -1271 150 -1271 -88 -88 -160 124 -1271 -1271 -234 178 -1271 218 -1271 -1271 -74 -1271 188 -1271 187 -1271 -1271 -1271 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGRTTCGA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 67 E= 1.9e-034 0.029851 0.014925 0.835821 0.119403 0.000000 0.029851 0.970149 0.000000 0.358209 0.000000 0.641791 0.000000 0.149254 0.119403 0.074627 0.656716 0.000000 0.000000 0.044776 0.955224 0.000000 1.000000 0.000000 0.000000 0.164179 0.000000 0.835821 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGRTTCGA MEME-1 regular expression -------------------------------------------------------------------------------- GG[GA]TTCGA -------------------------------------------------------------------------------- Time 4.75 secs. ******************************************************************************** ******************************************************************************** MOTIF GGTAGAGC MEME-2 width = 8 sites = 20 llr = 207 E-value = 6.9e-010 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGTAGAGC MEME-2 Description -------------------------------------------------------------------------------- Simplified A ::1a:a:: pos.-specific C ::1::1:a probability G aa::a:a1 matrix T ::9:1::: bits 2.2 ** * 2.0 ** * ** 1.7 ** ** ** 1.5 ** ***** Relative 1.3 ******** Entropy 1.1 ******** (14.9 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GGTAGAGC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTAGAGC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrI:6136555-6136635 59 1.22e-05 TAGCTCAGTC GGTAGAGC ACCAGACTCT chrIV:16399159-16399239 41 1.22e-05 ATAGCTCAGT GGTAGAGC GCTCCCTTAG chrIV:16398345-16398425 55 1.22e-05 ATAGCTCAGT GGTAGAGC GCTCCCTTAG chrV:9318189-9318269 29 1.22e-05 ATAGCTCAGG GGTAGAGC GCTCGCTTCG chrX:7323762-7323842 7 1.22e-05 CTCAGT GGTAGAGC GCTCCCTTAG chrX:4789100-4789180 49 1.22e-05 TAGCTCAGTT GGTAGAGC GTGAGACTTT chrI:12601750-12601830 40 1.22e-05 GTAGCTCAGT GGTAGAGC GCTCCCTTAG chrX:6286291-6286371 46 1.22e-05 ATAGCTCAGG GGTAGAGC GCTCGCTTTG chrX:9238850-9238930 30 1.22e-05 ATAGCTCAGT GGTAGAGC GCTCCCTTAG chrX:9237803-9237883 24 1.22e-05 ATAGCTCAGT GGTAGAGC GCTCCCTTAG chrII:7003218-7003298 71 1.22e-05 ATAGCTCAGT GGTAGAGC GC chrX:5713630-5713710 39 1.22e-05 TAGCTCAGTT GGTAGAGC GTGAGACTTT chrI:6135831-6135911 16 1.22e-05 TAGCTCAGTT GGTAGAGC GGAGGACTGT chrV:18412484-18412564 73 1.22e-05 ATAAGGGCAC GGTAGAGC chrX:487811-487891 20 1.22e-05 ATAGCTCAGT GGTAGAGC GTTGGTCTTG chrII:14617078-14617158 19 3.17e-05 TGGCGCAGGC GGTAGCGC ATTTCGCTGT chrX:11933732-11933812 12 3.17e-05 ATAGCTCAGA GGCAGAGC GTCTGTCTCG chrI:9624771-9624851 59 4.37e-05 ATTTGATTTC GGAAGAGC AAGTAGATAT chrV:3163278-3163358 56 5.63e-05 TAAACATTAG GGTAGAGG GTGCGCTGGT chrV:6559698-6559778 62 7.14e-05 AAATCATGGG GGTATAGC TCAGTGGCAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTAGAGC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:6136555-6136635 1.2e-05 58_[+2]_14 chrIV:16399159-16399239 1.2e-05 40_[+2]_32 chrIV:16398345-16398425 1.2e-05 54_[+2]_18 chrV:9318189-9318269 1.2e-05 28_[+2]_44 chrX:7323762-7323842 1.2e-05 6_[+2]_66 chrX:4789100-4789180 1.2e-05 48_[+2]_24 chrI:12601750-12601830 1.2e-05 39_[+2]_33 chrX:6286291-6286371 1.2e-05 45_[+2]_27 chrX:9238850-9238930 1.2e-05 29_[+2]_43 chrX:9237803-9237883 1.2e-05 23_[+2]_49 chrII:7003218-7003298 1.2e-05 70_[+2]_2 chrX:5713630-5713710 1.2e-05 38_[+2]_34 chrI:6135831-6135911 1.2e-05 15_[+2]_57 chrV:18412484-18412564 1.2e-05 72_[+2] chrX:487811-487891 1.2e-05 19_[+2]_53 chrII:14617078-14617158 3.2e-05 18_[+2]_54 chrX:11933732-11933812 3.2e-05 11_[+2]_61 chrI:9624771-9624851 4.4e-05 58_[+2]_14 chrV:3163278-3163358 5.6e-05 55_[+2]_17 chrV:6559698-6559778 7.1e-05 61_[+2]_11 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTAGAGC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGTAGAGC width=8 seqs=20 chrI:6136555-6136635 ( 59) GGTAGAGC 1 chrIV:16399159-16399239 ( 41) GGTAGAGC 1 chrIV:16398345-16398425 ( 55) GGTAGAGC 1 chrV:9318189-9318269 ( 29) GGTAGAGC 1 chrX:7323762-7323842 ( 7) GGTAGAGC 1 chrX:4789100-4789180 ( 49) GGTAGAGC 1 chrI:12601750-12601830 ( 40) GGTAGAGC 1 chrX:6286291-6286371 ( 46) GGTAGAGC 1 chrX:9238850-9238930 ( 30) GGTAGAGC 1 chrX:9237803-9237883 ( 24) GGTAGAGC 1 chrII:7003218-7003298 ( 71) GGTAGAGC 1 chrX:5713630-5713710 ( 39) GGTAGAGC 1 chrI:6135831-6135911 ( 16) GGTAGAGC 1 chrV:18412484-18412564 ( 73) GGTAGAGC 1 chrX:487811-487891 ( 20) GGTAGAGC 1 chrII:14617078-14617158 ( 19) GGTAGCGC 1 chrX:11933732-11933812 ( 12) GGCAGAGC 1 chrI:9624771-9624851 ( 59) GGAAGAGC 1 chrV:3163278-3163358 ( 56) GGTAGAGG 1 chrV:6559698-6559778 ( 62) GGTATAGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTAGAGC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.0839 E= 6.9e-010 -1097 -1097 214 -1097 -1097 -1097 214 -1097 -245 -214 -1097 169 187 -1097 -1097 -1097 -1097 -1097 207 -248 179 -214 -1097 -1097 -1097 -1097 214 -1097 -1097 211 -218 -1097 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTAGAGC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 20 E= 6.9e-010 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.050000 0.050000 0.000000 0.900000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.950000 0.050000 0.950000 0.050000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.950000 0.050000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTAGAGC MEME-2 regular expression -------------------------------------------------------------------------------- GGTAGAGC -------------------------------------------------------------------------------- Time 8.58 secs. ******************************************************************************** ******************************************************************************** MOTIF CTGAGCTA MEME-3 width = 8 sites = 15 llr = 160 E-value = 1.7e-005 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTGAGCTA MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::a:::a pos.-specific C a::::a2: probability G ::a:a::: matrix T :a::::8: bits 2.2 * * ** 2.0 * **** * 1.7 ****** * 1.5 ****** * Relative 1.3 ****** * Entropy 1.1 ******** (15.4 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CTGAGCTA consensus C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGAGCTA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrII:9211826-9211906 47 1.46e-05 GCTCTACCAA CTGAGCTA TCGACTGCAC chrIII:13016096-13016176 68 1.46e-05 CGCTCTGCCA CTGAGCTA TACGG chrII:11157798-11157878 62 1.46e-05 GCTCTACCGA CTGAGCTA ACCGGGCAGC chrX:14478866-14478946 69 1.46e-05 GCTCTACCGA CTGAGCTA ACCG chrII:12541725-12541805 21 1.46e-05 GCTCTACCAA CTGAGCTA AGGAGGCCAT chrIII:1163357-1163437 56 1.46e-05 CTCTAACCGA CTGAGCTA TGGCGGCACG chrX:9024428-9024508 42 1.46e-05 CGCTCTACCA CTGAGCTA TAAGGGCGAT chrX:2526242-2526322 35 1.46e-05 CTCTAACCGA CTGAGCTA TGGCGGCCAC chrI:7279373-7279453 40 1.46e-05 GCTCTACCGG CTGAGCTA ACCGGGCCCG chrI:111279-111359 70 1.46e-05 GCCGTCAAAA CTGAGCTA TAA chrV:18412484-18412564 56 1.46e-05 CGCTCTACCA CTGAGCTA TAAGGGCACG chrX:7507301-7507381 46 1.46e-05 CGCTCTACCA CTGAGCTA TACCCCCGGC chrIV:13795513-13795593 51 2.61e-05 CTCCAGTGGA CTGAGCCA TTTCGGCTGT chrV:2664673-2664753 51 2.61e-05 CGCTCTGCCA CTGAGCCA ATGAGGCGGC chrX:13283675-13283755 19 2.61e-05 CGCTCTGCCA CTGAGCCA ATGAGGCGCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGAGCTA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:9211826-9211906 1.5e-05 46_[+3]_26 chrIII:13016096-13016176 1.5e-05 67_[+3]_5 chrII:11157798-11157878 1.5e-05 61_[+3]_11 chrX:14478866-14478946 1.5e-05 68_[+3]_4 chrII:12541725-12541805 1.5e-05 20_[+3]_52 chrIII:1163357-1163437 1.5e-05 55_[+3]_17 chrX:9024428-9024508 1.5e-05 41_[+3]_31 chrX:2526242-2526322 1.5e-05 34_[+3]_38 chrI:7279373-7279453 1.5e-05 39_[+3]_33 chrI:111279-111359 1.5e-05 69_[+3]_3 chrV:18412484-18412564 1.5e-05 55_[+3]_17 chrX:7507301-7507381 1.5e-05 45_[+3]_27 chrIV:13795513-13795593 2.6e-05 50_[+3]_22 chrV:2664673-2664753 2.6e-05 50_[+3]_22 chrX:13283675-13283755 2.6e-05 18_[+3]_54 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGAGCTA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTGAGCTA width=8 seqs=15 chrII:9211826-9211906 ( 47) CTGAGCTA 1 chrIII:13016096-13016176 ( 68) CTGAGCTA 1 chrII:11157798-11157878 ( 62) CTGAGCTA 1 chrX:14478866-14478946 ( 69) CTGAGCTA 1 chrII:12541725-12541805 ( 21) CTGAGCTA 1 chrIII:1163357-1163437 ( 56) CTGAGCTA 1 chrX:9024428-9024508 ( 42) CTGAGCTA 1 chrX:2526242-2526322 ( 35) CTGAGCTA 1 chrI:7279373-7279453 ( 40) CTGAGCTA 1 chrI:111279-111359 ( 70) CTGAGCTA 1 chrV:18412484-18412564 ( 56) CTGAGCTA 1 chrX:7507301-7507381 ( 46) CTGAGCTA 1 chrIV:13795513-13795593 ( 51) CTGAGCCA 1 chrV:2664673-2664753 ( 51) CTGAGCCA 1 chrX:13283675-13283755 ( 19) CTGAGCCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGAGCTA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.1725 E= 1.7e-005 -1055 218 -1055 -1055 -1055 -1055 -1055 184 -1055 -1055 214 -1055 187 -1055 -1055 -1055 -1055 -1055 214 -1055 -1055 218 -1055 -1055 -1055 -14 -1055 152 187 -1055 -1055 -1055 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGAGCTA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 15 E= 1.7e-005 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.200000 0.000000 0.800000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGAGCTA MEME-3 regular expression -------------------------------------------------------------------------------- CTGAGC[TC]A -------------------------------------------------------------------------------- Time 12.23 secs. ******************************************************************************** ******************************************************************************** MOTIF TAGCTCAG MEME-4 width = 8 sites = 14 llr = 156 E-value = 4.7e-007 ******************************************************************************** -------------------------------------------------------------------------------- Motif TAGCTCAG MEME-4 Description -------------------------------------------------------------------------------- Simplified A :a::::a: pos.-specific C :::a:a:: probability G ::a::::a matrix T a:::a::: bits 2.2 ** * * 2.0 *** *** 1.7 ******** 1.5 ******** Relative 1.3 ******** Entropy 1.1 ******** (16.1 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TAGCTCAG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAGCTCAG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrI:6136555-6136635 49 1.46e-05 GCCGCCCGGT TAGCTCAG TCGGTAGAGC chrIV:16399159-16399239 32 1.46e-05 TGCGGGGGTA TAGCTCAG TGGTAGAGCG chrIV:16398345-16398425 46 1.46e-05 TGCGGGGGTA TAGCTCAG TGGTAGAGCG chrV:9318189-9318269 20 1.46e-05 CGTGGGGGTA TAGCTCAG GGGTAGAGCG chrX:4789100-4789180 39 1.46e-05 TGGGCCTCCT TAGCTCAG TTGGTAGAGC chrI:12601750-12601830 31 1.46e-05 TTTACCTGTG TAGCTCAG TGGTAGAGCG chrX:6286291-6286371 37 1.46e-05 TGCGGGGGTA TAGCTCAG GGGTAGAGCG chrX:9238850-9238930 21 1.46e-05 AGCGGGGGTA TAGCTCAG TGGTAGAGCG chrX:9237803-9237883 15 1.46e-05 TGTGGGGGTA TAGCTCAG TGGTAGAGCG chrII:7003218-7003298 62 1.46e-05 TGCGGGGGTA TAGCTCAG TGGTAGAGCG chrX:5713630-5713710 29 1.46e-05 AGGGCCTCCT TAGCTCAG TTGGTAGAGC chrI:6135831-6135911 6 1.46e-05 GTCGA TAGCTCAG TTGGTAGAGC chrX:487811-487891 11 1.46e-05 GACGCCCTTA TAGCTCAG TGGTAGAGCG chrX:11933732-11933812 3 1.46e-05 TA TAGCTCAG AGGCAGAGCG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAGCTCAG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:6136555-6136635 1.5e-05 48_[+4]_24 chrIV:16399159-16399239 1.5e-05 31_[+4]_41 chrIV:16398345-16398425 1.5e-05 45_[+4]_27 chrV:9318189-9318269 1.5e-05 19_[+4]_53 chrX:4789100-4789180 1.5e-05 38_[+4]_34 chrI:12601750-12601830 1.5e-05 30_[+4]_42 chrX:6286291-6286371 1.5e-05 36_[+4]_36 chrX:9238850-9238930 1.5e-05 20_[+4]_52 chrX:9237803-9237883 1.5e-05 14_[+4]_58 chrII:7003218-7003298 1.5e-05 61_[+4]_11 chrX:5713630-5713710 1.5e-05 28_[+4]_44 chrI:6135831-6135911 1.5e-05 5_[+4]_67 chrX:487811-487891 1.5e-05 10_[+4]_62 chrX:11933732-11933812 1.5e-05 2_[+4]_70 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAGCTCAG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TAGCTCAG width=8 seqs=14 chrI:6136555-6136635 ( 49) TAGCTCAG 1 chrIV:16399159-16399239 ( 32) TAGCTCAG 1 chrIV:16398345-16398425 ( 46) TAGCTCAG 1 chrV:9318189-9318269 ( 20) TAGCTCAG 1 chrX:4789100-4789180 ( 39) TAGCTCAG 1 chrI:12601750-12601830 ( 31) TAGCTCAG 1 chrX:6286291-6286371 ( 37) TAGCTCAG 1 chrX:9238850-9238930 ( 21) TAGCTCAG 1 chrX:9237803-9237883 ( 15) TAGCTCAG 1 chrII:7003218-7003298 ( 62) TAGCTCAG 1 chrX:5713630-5713710 ( 29) TAGCTCAG 1 chrI:6135831-6135911 ( 6) TAGCTCAG 1 chrX:487811-487891 ( 11) TAGCTCAG 1 chrX:11933732-11933812 ( 3) TAGCTCAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAGCTCAG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.1909 E= 4.7e-007 -1045 -1045 -1045 184 187 -1045 -1045 -1045 -1045 -1045 214 -1045 -1045 218 -1045 -1045 -1045 -1045 -1045 184 -1045 218 -1045 -1045 187 -1045 -1045 -1045 -1045 -1045 214 -1045 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAGCTCAG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 14 E= 4.7e-007 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAGCTCAG MEME-4 regular expression -------------------------------------------------------------------------------- TAGCTCAG -------------------------------------------------------------------------------- Time 15.75 secs. ******************************************************************************** ******************************************************************************** MOTIF GCTCTRCC MEME-5 width = 8 sites = 15 llr = 154 E-value = 1.6e-002 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCTCTRCC MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::6:: pos.-specific C :a:a::aa probability G a:3::4:: matrix T ::7:a::: bits 2.2 ** * ** 2.0 ** * ** 1.7 ** ** ** 1.5 ** ** ** Relative 1.3 ** ** ** Entropy 1.1 ******** (14.8 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GCTCTACC consensus G G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTCTRCC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrII:9211826-9211906 37 1.13e-05 ACAGTCCTCC GCTCTACC AACTGAGCTA chrII:11157798-11157878 52 1.13e-05 AGAGTCTGGT GCTCTACC GACTGAGCTA chrX:14478866-14478946 59 1.13e-05 AGAGTCTGGT GCTCTACC GACTGAGCTA chrII:12541725-12541805 11 1.13e-05 AAAGTCTCAC GCTCTACC AACTGAGCTA chrX:9024428-9024508 33 1.13e-05 CAAGACCAAC GCTCTACC ACTGAGCTAT chrI:7279373-7279453 30 1.13e-05 AGAGTCTGGT GCTCTACC GGCTGAGCTA chrV:18412484-18412564 47 1.13e-05 CAAGACCAAC GCTCTACC ACTGAGCTAT chrX:7507301-7507381 37 1.13e-05 CTAAGGGAGC GCTCTACC ACTGAGCTAT chrIII:13016096-13016176 59 2.07e-05 CGAGACAGAC GCTCTGCC ACTGAGCTAT chrV:2664673-2664753 42 2.07e-05 CTAGACAGAC GCTCTGCC ACTGAGCCAA chrX:13283675-13283755 10 2.07e-05 TAGACAGAC GCTCTGCC ACTGAGCCAA chrIV:7344177-7344257 27 3.00e-05 GGAGTCGAAC GCGCTACC ATTGCGCCAA chrI:9051272-9051352 29 3.76e-05 ACAGCCGAAC GCGCTGCC TATTGCGCCA chrV:20350555-20350635 22 3.76e-05 ACAGCCGAAC GCGCTGCC TATTGCGCCA chrX:5407457-5407537 4 3.76e-05 GAC GCGCTGCC TACTGCGCTA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTCTRCC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:9211826-9211906 1.1e-05 36_[+5]_36 chrII:11157798-11157878 1.1e-05 51_[+5]_21 chrX:14478866-14478946 1.1e-05 58_[+5]_14 chrII:12541725-12541805 1.1e-05 10_[+5]_62 chrX:9024428-9024508 1.1e-05 32_[+5]_40 chrI:7279373-7279453 1.1e-05 29_[+5]_43 chrV:18412484-18412564 1.1e-05 46_[+5]_26 chrX:7507301-7507381 1.1e-05 36_[+5]_36 chrIII:13016096-13016176 2.1e-05 58_[+5]_14 chrV:2664673-2664753 2.1e-05 41_[+5]_31 chrX:13283675-13283755 2.1e-05 9_[+5]_63 chrIV:7344177-7344257 3e-05 26_[+5]_46 chrI:9051272-9051352 3.8e-05 28_[+5]_44 chrV:20350555-20350635 3.8e-05 21_[+5]_51 chrX:5407457-5407537 3.8e-05 3_[+5]_69 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTCTRCC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCTCTRCC width=8 seqs=15 chrII:9211826-9211906 ( 37) GCTCTACC 1 chrII:11157798-11157878 ( 52) GCTCTACC 1 chrX:14478866-14478946 ( 59) GCTCTACC 1 chrII:12541725-12541805 ( 11) GCTCTACC 1 chrX:9024428-9024508 ( 33) GCTCTACC 1 chrI:7279373-7279453 ( 30) GCTCTACC 1 chrV:18412484-18412564 ( 47) GCTCTACC 1 chrX:7507301-7507381 ( 37) GCTCTACC 1 chrIII:13016096-13016176 ( 59) GCTCTGCC 1 chrV:2664673-2664753 ( 42) GCTCTGCC 1 chrX:13283675-13283755 ( 10) GCTCTGCC 1 chrIV:7344177-7344257 ( 27) GCGCTACC 1 chrI:9051272-9051352 ( 29) GCGCTGCC 1 chrV:20350555-20350635 ( 22) GCGCTGCC 1 chrX:5407457-5407537 ( 4) GCGCTGCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTCTRCC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.9222 E= 1.6e-002 -1055 -1055 214 -1055 -1055 218 -1055 -1055 -1055 -1055 24 139 -1055 218 -1055 -1055 -1055 -1055 -1055 184 113 -1055 82 -1055 -1055 218 -1055 -1055 -1055 218 -1055 -1055 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTCTRCC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 15 E= 1.6e-002 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.266667 0.733333 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.600000 0.000000 0.400000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTCTRCC MEME-5 regular expression -------------------------------------------------------------------------------- GC[TG]CT[AG]CC -------------------------------------------------------------------------------- Time 19.27 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:12496628-12496708 8.10e-01 80 chrIII:2031334-2031414 8.35e-01 80 chrX:11933732-11933812 1.64e-04 2_[+4(1.46e-05)]_1_[+2(3.17e-05)]_\ 61 chrX:7507301-7507381 4.02e-05 36_[+5(1.13e-05)]_1_[+3(1.46e-05)]_\ 27 chrX:5451170-5451250 1.96e-01 80 chrX:487811-487891 6.77e-04 10_[+4(1.46e-05)]_1_[+2(1.22e-05)]_\ 53 chrI:10570018-10570098 9.69e-01 80 chrI:10436896-10436976 8.10e-01 80 chrV:18412484-18412564 1.95e-06 46_[+5(1.13e-05)]_1_[+3(1.46e-05)]_\ 9_[+2(1.22e-05)] chrIV:12208054-12208134 9.63e-01 80 chrI:2310058-2310138 9.79e-01 80 chrI:6135831-6135911 2.79e-05 5_[+4(1.46e-05)]_2_[+2(1.22e-05)]_\ 36_[+1(9.00e-05)]_13 chrI:111279-111359 1.32e-02 69_[+3(1.46e-05)]_3 chrIII:8445341-8445421 6.84e-01 80 chrV:8499534-8499614 1.96e-01 80 chrV:7548689-7548769 1.84e-01 80 chrV:3455299-3455379 3.21e-01 80 chrX:7898280-7898360 1.04e-01 80 chrX:13283675-13283755 9.84e-04 9_[+5(2.07e-05)]_1_[+3(2.61e-05)]_\ 54 chrX:10124437-10124517 6.44e-01 80 chrIV:11146088-11146168 9.93e-01 80 chrX:4410683-4410763 3.50e-02 17_[+1(1.25e-05)]_55 chrIII:9814318-9814398 8.49e-01 80 chrIV:10311273-10311353 5.80e-01 80 chrV:6335425-6335505 2.50e-01 80 chrI:7279373-7279453 1.02e-04 29_[+5(1.13e-05)]_2_[+3(1.46e-05)]_\ 33 chrM:1820-1900 8.15e-01 80 chrIII:1599097-1599177 1.68e-01 80 chrV:2664673-2664753 1.44e-05 41_[+5(2.07e-05)]_1_[+3(2.61e-05)]_\ 22 chrIV:2664920-2665000 1.83e-01 80 chrV:265287-265367 8.32e-01 80 chrX:16618199-16618279 1.00e+00 80 chrI:2069346-2069426 1.41e-01 80 chrIV:6325801-6325881 9.98e-01 80 chrX:5713630-5713710 1.90e-06 28_[+4(1.46e-05)]_2_[+2(1.22e-05)]_\ 25_[+1(1.25e-05)]_1 chrIII:1603919-1603999 3.37e-02 [+1(2.75e-05)]_72 chrV:15084926-15085006 5.48e-01 80 chrV:5592041-5592121 9.66e-01 80 chrIV:15933282-15933362 5.26e-02 80 chrIII:2032863-2032943 1.04e-01 80 chrV:859103-859183 4.56e-01 80 chrIV:2657450-2657530 5.09e-01 80 chrII:6591132-6591212 3.11e-01 80 chrV:12683325-12683405 5.74e-02 36_[+1(1.25e-05)]_36 chrIV:13096831-13096911 7.26e-01 80 chrV:10127436-10127516 8.99e-01 80 chrV:3163278-3163358 8.10e-02 55_[+2(5.63e-05)]_17 chrIII:8639380-8639460 8.29e-02 22_[+1(1.25e-05)]_50 chrV:6783300-6783380 7.33e-01 80 chrX:10731973-10732053 2.42e-02 26_[+1(2.75e-05)]_46 chrIV:7961862-7961942 1.28e-02 80 chrIII:4362597-4362677 3.60e-02 23_[+1(1.25e-05)]_49 chrI:6051190-6051270 6.41e-03 80 chrM:3246-3326 8.37e-01 80 chrIV:16503757-16503837 7.69e-01 80 chrV:7733349-7733429 5.94e-01 80 chrV:6784598-6784678 9.20e-01 80 chrX:2526242-2526322 7.54e-03 34_[+3(1.46e-05)]_38 chrII:14617078-14617158 6.05e-03 18_[+2(3.17e-05)]_54 chrIV:5038951-5039031 4.51e-02 18_[+1(1.25e-05)]_54 chrX:14437948-14438028 9.83e-01 80 chrI:3786850-3786930 1.71e-01 80 chrIV:386911-386991 3.81e-01 80 chrX:5709306-5709386 5.67e-01 80 chrI:7058870-7058950 7.35e-01 80 chrII:8187390-8187470 9.48e-01 80 chrV:13006990-13007070 9.53e-01 80 chrX:3212711-3212791 5.08e-01 80 chrX:11645613-11645693 9.88e-01 80 chrII:7003218-7003298 6.80e-04 61_[+4(1.46e-05)]_1_[+2(1.22e-05)]_\ 2 chrI:4790708-4790788 4.96e-01 80 chrI:6320239-6320319 8.82e-01 80 chrIII:3249169-3249249 8.62e-01 80 chrV:18129040-18129120 8.48e-01 80 chrX:8640789-8640869 1.27e-02 15_[+1(2.75e-05)]_57 chrII:14032938-14033018 9.37e-01 80 chrIII:2795543-2795623 5.77e-02 80 chrX:3969517-3969597 3.35e-01 80 chrX:11163348-11163428 1.50e-01 20_[+1(2.75e-05)]_52 chrV:8496069-8496149 1.59e-01 80 chrIV:3296877-3296957 9.05e-01 80 chrI:14758834-14758914 4.20e-01 80 chrIV:14225040-14225120 4.22e-01 80 chrX:10148576-10148656 9.58e-01 80 chrX:7681003-7681083 2.94e-01 80 chrV:8247608-8247688 9.91e-01 80 chrV:10659419-10659499 1.93e-01 80 chrX:9237803-9237883 9.37e-07 14_[+4(1.46e-05)]_1_[+2(1.22e-05)]_\ 25_[+1(6.46e-05)]_16 chrV:2068882-2068962 6.05e-01 80 chrIV:15693410-15693490 5.26e-01 80 chrII:8441645-8441725 4.92e-01 80 chrIII:698935-699015 9.68e-01 80 chrX:6743287-6743367 8.93e-01 80 chrIV:1711145-1711225 4.20e-01 80 chrIV:16775203-16775283 8.87e-02 27_[+1(1.25e-05)]_45 chrIV:2664212-2664292 2.83e-01 80 chrIII:9616047-9616127 3.34e-01 80 chrIII:11554743-11554823 9.33e-01 80 chrX:13781571-13781651 7.70e-01 80 chrI:10187457-10187537 4.31e-01 80 chrX:9024428-9024508 9.23e-04 32_[+5(1.13e-05)]_1_[+3(1.46e-05)]_\ 31 chrI:9328378-9328458 2.14e-01 80 chrX:7378757-7378837 6.43e-02 80 chrIII:1163357-1163437 1.36e-04 7_[+1(7.47e-05)]_40_[+3(1.46e-05)]_\ 17 chrIV:7083584-7083664 8.65e-01 80 chrX:8846750-8846830 2.78e-02 19_[+1(1.25e-05)]_53 chrI:11584815-11584895 2.83e-02 21_[+1(1.25e-05)]_51 chrV:16640540-16640620 9.43e-01 80 chrM:2987-3067 8.43e-01 80 chrX:9238850-9238930 9.37e-07 20_[+4(1.46e-05)]_1_[+2(1.22e-05)]_\ 25_[+1(6.46e-05)]_10 chrI:11977246-11977326 4.16e-01 80 chrX:8152546-8152626 6.63e-01 80 chrI:852193-852273 6.97e-02 80 chrI:12905968-12906048 9.89e-01 80 chrV:14092461-14092541 1.06e-01 80 chrIV:7499501-7499581 5.17e-01 80 chrV:16648810-16648890 3.38e-01 80 chrI:13658187-13658267 3.97e-01 80 chrIV:14889063-14889143 5.18e-01 80 chrI:7091516-7091596 4.81e-01 80 chrIII:6374269-6374349 1.91e-01 80 chrX:6286291-6286371 9.02e-05 36_[+4(1.46e-05)]_1_[+2(1.22e-05)]_\ 27 chrI:6075908-6075988 3.54e-01 80 chrIV:2801162-2801242 2.35e-01 80 chrX:10667591-10667671 3.84e-02 50_[+1(1.25e-05)]_22 chrX:11993489-11993569 9.95e-02 80 chrI:7704643-7704723 8.82e-01 80 chrIV:15289662-15289742 1.25e-02 56_[+2(3.17e-05)]_16 chrX:16300617-16300697 4.27e-01 80 chrX:12337959-12338039 2.34e-01 80 chrV:16919895-16919975 5.85e-02 80 chrX:9373158-9373238 5.29e-02 80 chrIV:13795513-13795593 1.21e-02 50_[+3(2.61e-05)]_22 chrV:8301324-8301404 8.17e-02 80 chrIV:16862047-16862127 7.28e-01 80 chrX:8838357-8838437 9.97e-01 80 chrX:5407457-5407537 4.71e-04 3_[+5(3.76e-05)]_69 chrII:4228571-4228651 8.29e-01 80 chrX:16619275-16619355 8.86e-01 80 chrII:12542714-12542794 9.67e-01 80 chrV:20350555-20350635 2.19e-02 21_[+5(3.76e-05)]_51 chrX:13308007-13308087 1.59e-02 71_[+1(6.46e-05)]_1 chrX:16590322-16590402 9.91e-01 80 chrV:14231360-14231440 7.83e-01 80 chrIV:7344177-7344257 1.58e-03 26_[+5(3.00e-05)]_46 chrIII:880075-880155 5.82e-01 80 chrX:7773823-7773903 6.59e-01 80 chrV:4891364-4891444 8.39e-01 80 chrV:9340433-9340513 6.35e-01 80 chrI:12601750-12601830 9.37e-07 30_[+4(1.46e-05)]_1_[+2(1.22e-05)]_\ 25_[+1(6.46e-05)] chrX:16217983-16218063 9.39e-01 80 chrIV:12416975-12417055 6.17e-01 80 chrIII:1600816-1600896 1.52e-01 80 chrX:9622770-9622850 2.07e-01 80 chrIV:17088972-17089052 2.08e-01 80 chrV:6099038-6099118 6.03e-01 80 chrIV:13239590-13239670 8.97e-01 80 chrIV:1514596-1514676 1.66e-01 44_[+1(6.46e-05)]_28 chrIII:12499363-12499443 8.91e-01 80 chrII:12541725-12541805 2.77e-04 10_[+5(1.13e-05)]_2_[+3(1.46e-05)]_\ 52 chrI:4645500-4645580 2.71e-01 80 chrI:9624771-9624851 1.26e-01 58_[+2(4.37e-05)]_14 chrIV:6906299-6906379 7.45e-01 80 chrV:6559698-6559778 1.92e-03 65_[+4(1.46e-05)]_7 chrX:14228969-14229049 8.77e-01 80 chrIII:3112110-3112190 6.90e-02 44_[+1(4.96e-05)]_28 chrIV:4047746-4047826 1.00e+00 80 chrX:3793501-3793581 9.79e-01 80 chrII:10527709-10527789 6.68e-01 80 chrX:9090654-9090734 1.43e-01 80 chrV:3686025-3686105 7.03e-01 80 chrX:14478866-14478946 5.78e-06 21_[+1(4.96e-05)]_29_[+5(1.13e-05)]_\ 2_[+3(1.46e-05)]_4 chrI:8490878-8490958 9.34e-01 80 chrX:4789100-4789180 3.94e-04 38_[+4(1.46e-05)]_2_[+2(1.22e-05)]_\ 24 chrIV:13882652-13882732 6.68e-01 80 chrV:3585112-3585192 7.63e-01 80 chrII:11917673-11917753 9.94e-01 80 chrX:8608946-8609026 9.64e-01 80 chrM:2116-2196 4.16e-01 80 chrV:5667524-5667604 9.22e-01 80 chrIII:3869499-3869579 1.00e+00 80 chrIV:6481076-6481156 8.39e-01 80 chrIII:1743263-1743343 5.18e-02 80 chrII:11157798-11157878 5.78e-06 14_[+1(4.96e-05)]_29_[+5(1.13e-05)]_\ 2_[+3(1.46e-05)]_11 chrIV:4931000-4931080 4.82e-01 80 chrX:7323762-7323842 1.59e-04 6_[+2(1.22e-05)]_25_[+1(6.46e-05)]_\ 33 chrX:8638849-8638929 9.89e-01 80 chrX:7176832-7176912 9.98e-01 80 chrV:15454417-15454497 1.76e-01 80 chrII:11880569-11880649 9.88e-01 80 chrV:16338578-16338658 6.75e-02 19_[+1(9.00e-05)]_53 chrX:6867862-6867942 1.22e-01 80 chrX:10568505-10568585 6.55e-01 80 chrIV:13870303-13870383 1.80e-02 10_[+1(1.25e-05)]_62 chrM:4632-4712 9.85e-01 80 chrII:8747298-8747378 3.95e-01 80 chrIV:11956452-11956532 2.21e-01 80 chrI:9051272-9051352 4.45e-02 28_[+5(3.76e-05)]_44 chrX:13038914-13038994 6.10e-02 56_[+1(2.75e-05)]_16 chrX:8939547-8939627 5.83e-03 61_[+1(1.25e-05)]_11 chrIII:13464510-13464590 7.34e-01 80 chrX:13108878-13108958 6.63e-01 80 chrM:1199-1279 8.04e-01 80 chrII:8603679-8603759 9.91e-01 80 chrIV:16400920-16401000 3.15e-01 24_[+1(9.00e-05)]_48 chrII:4902249-4902329 9.99e-01 80 chrX:7906514-7906594 9.94e-01 80 chrX:13653751-13653831 5.88e-01 80 chrI:6163413-6163493 1.38e-01 68_[+1(7.47e-05)]_4 chrIV:14875403-14875483 5.99e-02 15_[+1(1.25e-05)]_57 chrIV:866972-867052 9.52e-01 80 chrX:14162072-14162152 7.89e-01 80 chrIV:7506239-7506319 4.20e-01 80 chrI:13652769-13652849 4.79e-01 80 chrIII:1616772-1616852 6.27e-01 80 chrII:11756860-11756940 6.79e-01 80 chrIII:2811643-2811723 1.00e+00 80 chrM:4833-4913 2.98e-01 80 chrV:15547908-15547988 5.35e-01 80 chrII:2920914-2920994 2.96e-01 80 chrIV:5946902-5946982 5.98e-01 80 chrI:12229337-12229417 5.48e-02 80 chrIV:15932016-15932096 1.07e-01 42_[+1(6.46e-05)]_30 chrX:10821335-10821415 1.44e-01 80 chrX:9078295-9078375 4.03e-01 80 chrX:7794562-7794642 8.10e-01 80 chrIII:13016096-13016176 3.49e-04 58_[+5(2.07e-05)]_1_[+3(1.46e-05)]_\ 5 chrV:9318189-9318269 8.40e-06 19_[+4(1.46e-05)]_1_[+2(1.22e-05)]_\ 25_[+1(6.46e-05)]_11 chrIV:13701638-13701718 1.76e-01 80 chrI:11978762-11978842 5.71e-03 50_[+1(1.25e-05)]_22 chrIII:10746546-10746626 9.05e-01 80 chrIV:16776088-16776168 9.29e-02 48_[+1(1.25e-05)]_24 chrI:13953278-13953358 6.89e-01 80 chrIII:1419827-1419907 5.26e-01 80 chrX:9091523-9091603 3.18e-02 80 chrIV:14576569-14576649 7.21e-02 80 chrIV:2665772-2665852 1.64e-02 31_[+4(8.99e-05)]_41 chrI:4911546-4911626 5.12e-01 80 chrIII:6805546-6805626 2.53e-03 38_[+2(7.91e-05)]_25_[+1(9.00e-05)]_\ 1 chrX:13714819-13714899 9.96e-01 80 chrIV:16398345-16398425 8.26e-06 45_[+4(1.46e-05)]_1_[+2(1.22e-05)]_\ 18 chrX:12889981-12890061 4.78e-02 80 chrI:6164226-6164306 1.34e-01 80 chrIV:16399159-16399239 2.05e-05 31_[+4(1.46e-05)]_1_[+2(1.22e-05)]_\ 32 chrI:6136555-6136635 2.84e-04 48_[+4(1.46e-05)]_2_[+2(1.22e-05)]_\ 14 chrII:6587697-6587777 5.59e-01 80 chrX:12347984-12348064 1.43e-01 33_[+1(2.75e-05)]_39 chrX:13730480-13730560 4.59e-01 80 chrII:9211826-9211906 6.77e-04 36_[+5(1.13e-05)]_2_[+3(1.46e-05)]_\ 26 chrX:2971590-2971670 1.87e-01 80 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n09.farnam.hpc.yale.internal ********************************************************************************