******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/worm/fasta/RankLinear2.0_40/mls-2.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrX:4760864-4760944 1.0000 80 chrX:4759873-4759953 1.0000 80 chrIII:2913047-2913127 1.0000 80 chrX:4761613-4761693 1.0000 80 chrX:4762986-4763066 1.0000 80 chrX:17413999-17414079 1.0000 80 chrX:852868-852948 1.0000 80 chrI:2826996-2827076 1.0000 80 chrX:2707664-2707744 1.0000 80 chrIV:10867951-10868031 1.0000 80 chrX:3223279-3223359 1.0000 80 chrV:8797029-8797109 1.0000 80 chrI:14137699-14137779 1.0000 80 chrI:8137168-8137248 1.0000 80 chrIV:2981604-2981684 1.0000 80 chrX:10926085-10926165 1.0000 80 chrV:6684700-6684780 1.0000 80 chrX:7220402-7220482 1.0000 80 chrX:14329487-14329567 1.0000 80 chrX:3469469-3469549 1.0000 80 chrII:10065542-10065622 1.0000 80 chrX:15307699-15307779 1.0000 80 chrX:3470823-3470903 1.0000 80 chrII:6940031-6940111 1.0000 80 chrI:3623935-3624015 1.0000 80 chrX:8569318-8569398 1.0000 80 chrIV:12617403-12617483 1.0000 80 chrIV:1904239-1904319 1.0000 80 chrII:7814406-7814486 1.0000 80 chrX:2044832-2044912 1.0000 80 chrII:10374932-10375012 1.0000 80 chrIV:175823-175903 1.0000 80 chrV:14792487-14792567 1.0000 80 chrX:7453994-7454074 1.0000 80 chrX:8182146-8182226 1.0000 80 chrV:20061670-20061750 1.0000 80 chrX:2583449-2583529 1.0000 80 chrIV:3521838-3521918 1.0000 80 chrIV:7521615-7521695 1.0000 80 chrIV:5093581-5093661 1.0000 80 chrI:14805095-14805175 1.0000 80 chrX:12688806-12688886 1.0000 80 chrX:7713064-7713144 1.0000 80 chrI:1093738-1093818 1.0000 80 chrX:4760075-4760155 1.0000 80 chrI:3993706-3993786 1.0000 80 chrIV:13410379-13410459 1.0000 80 chrI:2258102-2258182 1.0000 80 chrIII:13525652-13525732 1.0000 80 chrV:6485255-6485335 1.0000 80 chrI:8783860-8783940 1.0000 80 chrIII:4451189-4451269 1.0000 80 chrII:10373699-10373779 1.0000 80 chrIII:5940162-5940242 1.0000 80 chrV:11947315-11947395 1.0000 80 chrIII:4273022-4273102 1.0000 80 chrX:4576481-4576561 1.0000 80 chrX:2043405-2043485 1.0000 80 chrII:11535624-11535704 1.0000 80 chrX:9510048-9510128 1.0000 80 chrII:10621146-10621226 1.0000 80 chrX:10990623-10990703 1.0000 80 chrIII:9451111-9451191 1.0000 80 chrI:14962326-14962406 1.0000 80 chrX:15347868-15347948 1.0000 80 chrII:9488951-9489031 1.0000 80 chrV:9395380-9395460 1.0000 80 chrII:6411924-6412004 1.0000 80 chrIII:13032616-13032696 1.0000 80 chrII:11567476-11567556 1.0000 80 chrX:1644328-1644408 1.0000 80 chrIII:4519553-4519633 1.0000 80 chrX:6953464-6953544 1.0000 80 chrIV:1896250-1896330 1.0000 80 chrI:13843259-13843339 1.0000 80 chrIV:2488044-2488124 1.0000 80 chrIII:6605585-6605665 1.0000 80 chrI:788202-788282 1.0000 80 chrII:2461495-2461575 1.0000 80 chrX:1603148-1603228 1.0000 80 chrI:810736-810816 1.0000 80 chrX:11033260-11033340 1.0000 80 chrV:20457497-20457577 1.0000 80 chrII:11890735-11890815 1.0000 80 chrIV:1895104-1895184 1.0000 80 chrV:6470260-6470340 1.0000 80 chrX:13504001-13504081 1.0000 80 chrX:3310768-3310848 1.0000 80 chrX:9089690-9089770 1.0000 80 chrII:7809523-7809603 1.0000 80 chrI:3205910-3205990 1.0000 80 chrIV:13028376-13028456 1.0000 80 chrV:3132237-3132317 1.0000 80 chrI:7195031-7195111 1.0000 80 chrI:7715660-7715740 1.0000 80 chrIII:39685-39765 1.0000 80 chrV:16699887-16699967 1.0000 80 chrIV:3860502-3860582 1.0000 80 chrII:13986225-13986305 1.0000 80 chrX:8401579-8401659 1.0000 80 chrII:5228810-5228890 1.0000 80 chrV:5846829-5846909 1.0000 80 chrX:14671680-14671760 1.0000 80 chrX:3102958-3103038 1.0000 80 chrX:4881419-4881499 1.0000 80 chrIV:9123847-9123927 1.0000 80 chrII:3999665-3999745 1.0000 80 chrI:2709713-2709793 1.0000 80 chrI:2746072-2746152 1.0000 80 chrIII:12341544-12341624 1.0000 80 chrII:9574545-9574625 1.0000 80 chrII:4580971-4581051 1.0000 80 chrX:9188212-9188292 1.0000 80 chrV:14832364-14832444 1.0000 80 chrX:3977385-3977465 1.0000 80 chrX:5810523-5810603 1.0000 80 chrX:5764876-5764956 1.0000 80 chrI:13417479-13417559 1.0000 80 chrX:2920620-2920700 1.0000 80 chrX:4753082-4753162 1.0000 80 chrII:13790998-13791078 1.0000 80 chrI:687256-687336 1.0000 80 chrX:3314039-3314119 1.0000 80 chrI:4703391-4703471 1.0000 80 chrV:1473979-1474059 1.0000 80 chrIII:5668121-5668201 1.0000 80 chrX:5140354-5140434 1.0000 80 chrIV:12546019-12546099 1.0000 80 chrX:2700802-2700882 1.0000 80 chrI:11062088-11062168 1.0000 80 chrII:5460937-5461017 1.0000 80 chrIV:5978290-5978370 1.0000 80 chrIII:13065912-13065992 1.0000 80 chrIV:4756146-4756226 1.0000 80 chrX:14486592-14486672 1.0000 80 chrIV:1377773-1377853 1.0000 80 chrIV:128636-128716 1.0000 80 chrII:6522802-6522882 1.0000 80 chrX:2552316-2552396 1.0000 80 chrI:1740976-1741056 1.0000 80 chrI:5422348-5422428 1.0000 80 chrII:7673994-7674074 1.0000 80 chrV:9088900-9088980 1.0000 80 chrX:10990827-10990907 1.0000 80 chrX:7218085-7218165 1.0000 80 chrV:4967403-4967483 1.0000 80 chrII:10990795-10990875 1.0000 80 chrIV:605481-605561 1.0000 80 chrII:10755572-10755652 1.0000 80 chrX:5518486-5518566 1.0000 80 chrI:6285771-6285851 1.0000 80 chrIV:3854860-3854940 1.0000 80 chrV:18589674-18589754 1.0000 80 chrIV:1920274-1920354 1.0000 80 chrI:3842475-3842555 1.0000 80 chrV:5850639-5850719 1.0000 80 chrII:4207578-4207658 1.0000 80 chrII:9491220-9491300 1.0000 80 chrIII:4514031-4514111 1.0000 80 chrIII:4452890-4452970 1.0000 80 chrI:6746651-6746731 1.0000 80 chrX:15213490-15213570 1.0000 80 chrI:7535466-7535546 1.0000 80 chrX:8600042-8600122 1.0000 80 chrI:11089386-11089466 1.0000 80 chrIII:9112730-9112810 1.0000 80 chrII:9304958-9305038 1.0000 80 chrIV:9772308-9772388 1.0000 80 chrX:7534666-7534746 1.0000 80 chrI:7712513-7712593 1.0000 80 chrII:11088285-11088365 1.0000 80 chrV:20410460-20410540 1.0000 80 chrIII:1162116-1162196 1.0000 80 chrX:9734516-9734596 1.0000 80 chrV:11959908-11959988 1.0000 80 chrV:978809-978889 1.0000 80 chrIV:3337464-3337544 1.0000 80 chrIII:13064770-13064850 1.0000 80 chrIV:9264004-9264084 1.0000 80 chrII:5418479-5418559 1.0000 80 chrV:14498382-14498462 1.0000 80 chrIV:6648833-6648913 1.0000 80 chrI:14626929-14627009 1.0000 80 chrX:2879795-2879875 1.0000 80 chrX:12692108-12692188 1.0000 80 chrII:9266422-9266502 1.0000 80 chrIV:5536102-5536182 1.0000 80 chrX:7527913-7527993 1.0000 80 chrII:6441117-6441197 1.0000 80 chrIII:4005555-4005635 1.0000 80 chrX:4869825-4869905 1.0000 80 chrX:8603190-8603270 1.0000 80 chrI:7714691-7714771 1.0000 80 chrIII:179308-179388 1.0000 80 chrII:3597208-3597288 1.0000 80 chrX:760621-760701 1.0000 80 chrII:2832685-2832765 1.0000 80 chrV:19630872-19630952 1.0000 80 chrX:6807601-6807681 1.0000 80 chrII:3501270-3501350 1.0000 80 chrIV:1908722-1908802 1.0000 80 chrV:11852500-11852580 1.0000 80 chrI:2552902-2552982 1.0000 80 chrV:4964342-4964422 1.0000 80 chrX:1244423-1244503 1.0000 80 chrV:1233255-1233335 1.0000 80 chrV:4193296-4193376 1.0000 80 chrI:4312778-4312858 1.0000 80 chrII:11040009-11040089 1.0000 80 chrX:15278021-15278101 1.0000 80 chrI:1559214-1559294 1.0000 80 chrIII:434499-434579 1.0000 80 chrI:6289826-6289906 1.0000 80 chrIV:2250859-2250939 1.0000 80 chrX:16150317-16150397 1.0000 80 chrII:6409239-6409319 1.0000 80 chrII:3959844-3959924 1.0000 80 chrII:5877774-5877854 1.0000 80 chrIV:5527037-5527117 1.0000 80 chrX:4307629-4307709 1.0000 80 chrI:13500354-13500434 1.0000 80 chrX:8397342-8397422 1.0000 80 chrIV:3766490-3766570 1.0000 80 chrX:3467463-3467543 1.0000 80 chrIII:4461583-4461663 1.0000 80 chrI:3338383-3338463 1.0000 80 chrI:4973189-4973269 1.0000 80 chrI:11098310-11098390 1.0000 80 chrX:2045034-2045114 1.0000 80 chrIII:9817401-9817481 1.0000 80 chrI:4224879-4224959 1.0000 80 chrV:14793323-14793403 1.0000 80 chrIV:14032770-14032850 1.0000 80 chrI:6280435-6280515 1.0000 80 chrX:5056377-5056457 1.0000 80 chrII:9263260-9263340 1.0000 80 chrII:10989485-10989565 1.0000 80 chrI:14833928-14834008 1.0000 80 chrIII:12023333-12023413 1.0000 80 chrIV:10817125-10817205 1.0000 80 chrX:8398381-8398461 1.0000 80 chrII:8748189-8748269 1.0000 80 chrV:11280247-11280327 1.0000 80 chrX:5124489-5124569 1.0000 80 chrI:5077797-5077877 1.0000 80 chrII:4130239-4130319 1.0000 80 chrIII:2983173-2983253 1.0000 80 chrIII:11856111-11856191 1.0000 80 chrI:3100670-3100750 1.0000 80 chrV:11341411-11341491 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/worm/inference_raw/MEME/RankLinear2.0_40_mls-2/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/worm/fasta/RankLinear2.0_40/mls-2.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.256 C 0.243 G 0.237 T 0.264 Background letter frequencies (from file dataset with add-one prior applied): A 0.256 C 0.243 G 0.237 T 0.264 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GGGGGGGG MEME-1 width = 8 sites = 19 llr = 188 E-value = 2.5e-005 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGGGGGGG MEME-1 Description -------------------------------------------------------------------------------- Simplified A ::1:2::: pos.-specific C :1:::::: probability G a8998aaa matrix T :2:1:::: bits 2.1 * *** 1.9 * ** *** 1.7 * ** *** 1.5 * ** *** Relative 1.2 * ****** Entropy 1.0 ******** (14.3 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GGGGGGGG consensus A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGGGGG MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:15278021-15278101 37 9.95e-06 GCTggggggg gggggggg ggTGTCTTTC chrX:4869825-4869905 36 9.95e-06 GATGAGAGGG GGGGGGGG GAAGGTGAAG chrX:7527913-7527993 42 9.95e-06 aagggggggg gggggggg gtggcgtggg chrX:5518486-5518566 48 9.95e-06 GAGCAGGGGG GGGGGGGG CACACACAAC chrIV:1377773-1377853 17 9.95e-06 CGCCACCGGG GGGGGGGG GGACGCGGAA chrX:14671680-14671760 35 9.95e-06 GAGGAGGAGG GGGGGGGG GGGCACTCAT chrX:2583449-2583529 39 9.95e-06 aggggggggg gggggggg CAGCCGCAAT chrIV:1904239-1904319 2 9.95e-06 G GGGGGGGG TCCCCTTCCG chrII:10065542-10065622 14 9.95e-06 GGGAGAACGG GGGGGGGG GCAAATAAAA chrI:2826996-2827076 71 9.95e-06 GTGTGTGTGG GGGGGGGG GG chrIII:2913047-2913127 37 9.95e-06 Tggggggggg gggggggg gTCAAGTAAA chrI:5422348-5422428 43 2.07e-05 ACACATCTAA GGGGAGGG ATTGTCCGAT chrI:2709713-2709793 32 2.07e-05 GGGGGGAAAC GGGGAGGG AAATGGGTTG chrII:9488951-9489031 15 3.18e-05 ATGAATGCGC GTGGGGGG TGATGTGAAT chrI:788202-788282 6 4.20e-05 AAGAA GCGGGGGG AAGGGGAGCC chrIII:2983173-2983253 55 6.38e-05 CACGGAGCCA GGAGGGGG AAAAGAGATT chrV:20410460-20410540 41 6.38e-05 GAAACAAGGC GGGTGGGG TATCATGTAT chrII:9263260-9263340 32 7.58e-05 TGAATGAATT GTGGAGGG ATTGTGAGGG chrX:5764876-5764956 33 7.58e-05 AGAGGATTGA GTGGAGGG TGGAGAGTAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGGGGG MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:15278021-15278101 1e-05 36_[+1]_36 chrX:4869825-4869905 1e-05 35_[+1]_37 chrX:7527913-7527993 1e-05 41_[+1]_31 chrX:5518486-5518566 1e-05 47_[+1]_25 chrIV:1377773-1377853 1e-05 16_[+1]_56 chrX:14671680-14671760 1e-05 34_[+1]_38 chrX:2583449-2583529 1e-05 38_[+1]_34 chrIV:1904239-1904319 1e-05 1_[+1]_71 chrII:10065542-10065622 1e-05 13_[+1]_59 chrI:2826996-2827076 1e-05 70_[+1]_2 chrIII:2913047-2913127 1e-05 36_[+1]_36 chrI:5422348-5422428 2.1e-05 42_[+1]_30 chrI:2709713-2709793 2.1e-05 31_[+1]_41 chrII:9488951-9489031 3.2e-05 14_[+1]_58 chrI:788202-788282 4.2e-05 5_[+1]_67 chrIII:2983173-2983253 6.4e-05 54_[+1]_18 chrV:20410460-20410540 6.4e-05 40_[+1]_32 chrII:9263260-9263340 7.6e-05 31_[+1]_41 chrX:5764876-5764956 7.6e-05 32_[+1]_40 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGGGGG MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGGGGGGG width=8 seqs=19 chrX:15278021-15278101 ( 37) GGGGGGGG 1 chrX:4869825-4869905 ( 36) GGGGGGGG 1 chrX:7527913-7527993 ( 42) GGGGGGGG 1 chrX:5518486-5518566 ( 48) GGGGGGGG 1 chrIV:1377773-1377853 ( 17) GGGGGGGG 1 chrX:14671680-14671760 ( 35) GGGGGGGG 1 chrX:2583449-2583529 ( 39) GGGGGGGG 1 chrIV:1904239-1904319 ( 2) GGGGGGGG 1 chrII:10065542-10065622 ( 14) GGGGGGGG 1 chrI:2826996-2827076 ( 71) GGGGGGGG 1 chrIII:2913047-2913127 ( 37) GGGGGGGG 1 chrI:5422348-5422428 ( 43) GGGGAGGG 1 chrI:2709713-2709793 ( 32) GGGGAGGG 1 chrII:9488951-9489031 ( 15) GTGGGGGG 1 chrI:788202-788282 ( 6) GCGGGGGG 1 chrIII:2983173-2983253 ( 55) GGAGGGGG 1 chrV:20410460-20410540 ( 41) GGGTGGGG 1 chrII:9263260-9263340 ( 32) GTGGAGGG 1 chrX:5764876-5764956 ( 33) GTGGAGGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGGGGG MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.7222 E= 2.5e-005 -1089 -1089 208 -1089 -1089 -220 174 -74 -228 -1089 200 -1089 -1089 -1089 200 -232 -28 -1089 174 -1089 -1089 -1089 208 -1089 -1089 -1089 208 -1089 -1089 -1089 208 -1089 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGGGGG MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 19 E= 2.5e-005 0.000000 0.000000 1.000000 0.000000 0.000000 0.052632 0.789474 0.157895 0.052632 0.000000 0.947368 0.000000 0.000000 0.000000 0.947368 0.052632 0.210526 0.000000 0.789474 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGGGGG MEME-1 regular expression -------------------------------------------------------------------------------- GGGG[GA]GGG -------------------------------------------------------------------------------- Time 7.94 secs. ******************************************************************************** ******************************************************************************** MOTIF ARARRRAG MEME-2 width = 8 sites = 56 llr = 417 E-value = 1.5e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif ARARRRAG MEME-2 Description -------------------------------------------------------------------------------- Simplified A a3a45582 pos.-specific C :::::::: probability G :7:65528 matrix T :::::::: bits 2.1 1.9 * * 1.7 * * 1.5 * * Relative 1.2 * * ** Entropy 1.0 ******** (10.7 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AGAGAAAG consensus A AGG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARARRRAG MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrV:11280247-11280327 44 2.82e-05 GGTGTGAGTG AGAGAGAG AAGGAGAGTA chrI:13500354-13500434 54 2.82e-05 GAAGACTGTC agagagag ggagagagtg chrII:3959844-3959924 38 2.82e-05 GAGGAAATGG AGAGAGAG ATGGAGAGAA chrIII:434499-434579 58 2.82e-05 gaagatacgc agagaaag aggggaaaga chrI:14626929-14627009 65 2.82e-05 TTGgagagag agagagag agagagag chrIII:4514031-4514111 63 2.82e-05 ACCAAAAGAG AGAGAGAG TGGTCACTCT chrI:5422348-5422428 10 2.82e-05 CGTGAATAG AGAGAGAG AAGCAGCGCG chrIII:13065912-13065992 66 2.82e-05 TGCAATCAGG AGAGAAAG AAGAGGA chrX:13504001-13504081 12 2.82e-05 GAGCCCACAG AGAGAGAG CGACGAGAAA chrIV:1896250-1896330 19 2.82e-05 agacaaggag agagagag agagagagGC chrX:852868-852948 38 2.82e-05 agggagaccg agagagag aAAAGGGACT chrV:14793323-14793403 32 5.43e-05 CAGACTAATG AGAGGAAG GAAATTCGTT chrX:4307629-4307709 19 5.43e-05 TGCGGAATTA AGAGGGAG ACGCGCGCAG chrII:9488951-9489031 55 8.47e-05 GTCTCTCTGA AGAAAGAG GGGGAGCCGC chrIII:5940162-5940242 10 8.47e-05 TTCTTGTGC AGAAAGAG TGCCGTTTGA chrV:8797029-8797109 35 8.47e-05 GAGGAGGTAG AGAAAAAG AGTGCCCGTG chrIII:4461583-4461663 50 1.13e-04 TATCCCACTG AGAAGAAG AGGTACTCAA chrV:4193296-4193376 57 1.13e-04 GAGTAGAAGA AGAAGGAG GAAGATGTAG chrX:9734516-9734596 56 1.13e-04 GTTGTAATGG AGAAGAAG GATAAGTCAT chrI:788202-788282 63 1.13e-04 GGAAAAAGAG AGAAGGAG GAGAGCCATT chrX:7713064-7713144 66 1.13e-04 ATGTGCAAAG AGAAGAAG ACTGCGC chrII:5877774-5877854 53 1.43e-04 ACATAGAAGC AAAGAGAG GGTCACACAG chrV:11959908-11959988 73 1.43e-04 AGAAGTTGGA AAAGAAAG chrV:4967403-4967483 23 1.43e-04 TATGGGTGTT AAAGAAAG GAGGTCCCGA chrX:5124489-5124569 15 1.72e-04 AGTGCTGGGC AAAGGAAG ACAGGAATGG chrI:7712513-7712593 47 1.72e-04 TGTGTTAGGG AAAGGAAG GAAGGGTCTG chrIV:12546019-12546099 29 1.72e-04 ACCTACCAAG AAAGGGAG GGATTACACA chrII:10065542-10065622 71 1.72e-04 AAAAAACCAA AAAGGGAG AA chrII:3597208-3597288 23 2.04e-04 GCGGCTTCTT AAAAAAAG GAGACATGAT chrII:9266422-9266502 15 2.04e-04 AAATCCGGAT AAAAAGAG CGACACACTG chrIV:9264004-9264084 44 2.04e-04 AAACGGGAGC AAAAAAAG ACGACGGCAT chrX:7218085-7218165 11 2.35e-04 CCCTGTTTGG AAAAGAAG ACGTGGTCAC chrX:5764876-5764956 53 2.35e-04 GAGAGTATGC AAAAGAAG TAGACGAGAC chrI:2746072-2746152 45 2.35e-04 AAATAGCGAC AAAAGAAG TGGGGTTGCA chrIII:6605585-6605665 24 2.35e-04 ATAAAAGAAT AAAAGAAG ATTGAACATC chrX:3470823-3470903 17 2.35e-04 ATTGAGAGTG AAAAGAAG AAATATGTGA chrX:17413999-17414079 4 2.61e-04 GAA AGAGAAGG TCCTAGAGAG chrX:7527913-7527993 63 3.16e-04 gcgtggggTG AGAGAAAA GTATGAAGAA chrII:9304958-9305038 28 3.16e-04 GAGGCAATGG AGAGAAAA TGACATATGG chrV:5850639-5850719 42 3.16e-04 GTGGGCTCCA AGAGAGAA AAGTGATGGT chrX:14671680-14671760 24 3.16e-04 AACACTGAAG AGAGGAGG AGGGGGGGGG chrIV:3860502-3860582 58 3.16e-04 AGAGGGTATT AGAGGGGG AGAAAATAGA chrI:3623935-3624015 57 3.16e-04 TTATTTTACG AGAGGAGG TAGTAATCAT chrX:3223279-3223359 25 3.16e-04 GGGGAGGTAT AGAGGAGG AAGGATGTGC chrI:5077797-5077877 43 3.72e-04 AAATGGATGA AGAAAGGG GAGGAGGAAA chrV:20410460-20410540 73 4.31e-04 CGGCGGGCAG AGAAGAGG chrIV:128636-128716 70 4.31e-04 CAAAACTACA AGAAAAAA TTA chrII:5228810-5228890 60 4.31e-04 TATTGGCAAA AGAAGGGG GTGTAATCCA chrI:2826996-2827076 40 4.31e-04 TTTTGTCTGT AGAAAAAA GGTGTCCAAA chrII:10621146-10621226 66 4.61e-04 ACTGGGATGG AGAAGGAA AGGATGG chrX:2043405-2043485 2 5.79e-04 A AAAGGGAA CACAATGCAG chrX:15307699-15307779 64 5.79e-04 TCGTCCAGTG AAAGGAAA TGGAGACAA chrIII:11856111-11856191 57 6.09e-04 gtcggaatta aaaaaggg aaattgccgg chrII:4580971-4581051 59 6.73e-04 GGCGATATTC AAAAAGAA ATGCTCCCCA chrX:2707664-2707744 66 7.60e-04 GAAGGGATTG AGAGGAGA CGGCGGT chrX:7453994-7454074 49 7.91e-04 TTTTCCGACA AGAAAGGA TGGGACCCAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARARRRAG MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:11280247-11280327 2.8e-05 43_[+2]_29 chrI:13500354-13500434 2.8e-05 53_[+2]_19 chrII:3959844-3959924 2.8e-05 37_[+2]_35 chrIII:434499-434579 2.8e-05 57_[+2]_15 chrI:14626929-14627009 2.8e-05 64_[+2]_8 chrIII:4514031-4514111 2.8e-05 62_[+2]_10 chrI:5422348-5422428 2.8e-05 9_[+2]_63 chrIII:13065912-13065992 2.8e-05 65_[+2]_7 chrX:13504001-13504081 2.8e-05 11_[+2]_61 chrIV:1896250-1896330 2.8e-05 18_[+2]_54 chrX:852868-852948 2.8e-05 37_[+2]_35 chrV:14793323-14793403 5.4e-05 31_[+2]_41 chrX:4307629-4307709 5.4e-05 18_[+2]_54 chrII:9488951-9489031 8.5e-05 54_[+2]_18 chrIII:5940162-5940242 8.5e-05 9_[+2]_63 chrV:8797029-8797109 8.5e-05 34_[+2]_38 chrIII:4461583-4461663 0.00011 49_[+2]_23 chrV:4193296-4193376 0.00011 56_[+2]_16 chrX:9734516-9734596 0.00011 55_[+2]_17 chrI:788202-788282 0.00011 62_[+2]_10 chrX:7713064-7713144 0.00011 65_[+2]_7 chrII:5877774-5877854 0.00014 52_[+2]_20 chrV:11959908-11959988 0.00014 72_[+2] chrV:4967403-4967483 0.00014 22_[+2]_50 chrX:5124489-5124569 0.00017 14_[+2]_58 chrI:7712513-7712593 0.00017 46_[+2]_26 chrIV:12546019-12546099 0.00017 28_[+2]_44 chrII:10065542-10065622 0.00017 70_[+2]_2 chrII:3597208-3597288 0.0002 22_[+2]_50 chrII:9266422-9266502 0.0002 14_[+2]_58 chrIV:9264004-9264084 0.0002 43_[+2]_29 chrX:7218085-7218165 0.00023 10_[+2]_62 chrX:5764876-5764956 0.00023 52_[+2]_20 chrI:2746072-2746152 0.00023 44_[+2]_28 chrIII:6605585-6605665 0.00023 23_[+2]_49 chrX:3470823-3470903 0.00023 16_[+2]_56 chrX:17413999-17414079 0.00026 3_[+2]_69 chrX:7527913-7527993 0.00032 62_[+2]_10 chrII:9304958-9305038 0.00032 27_[+2]_45 chrV:5850639-5850719 0.00032 41_[+2]_31 chrX:14671680-14671760 0.00032 23_[+2]_49 chrIV:3860502-3860582 0.00032 57_[+2]_15 chrI:3623935-3624015 0.00032 56_[+2]_16 chrX:3223279-3223359 0.00032 24_[+2]_48 chrI:5077797-5077877 0.00037 42_[+2]_30 chrV:20410460-20410540 0.00043 72_[+2] chrIV:128636-128716 0.00043 69_[+2]_3 chrII:5228810-5228890 0.00043 59_[+2]_13 chrI:2826996-2827076 0.00043 39_[+2]_33 chrII:10621146-10621226 0.00046 65_[+2]_7 chrX:2043405-2043485 0.00058 1_[+2]_71 chrX:15307699-15307779 0.00058 63_[+2]_9 chrIII:11856111-11856191 0.00061 56_[+2]_16 chrII:4580971-4581051 0.00067 58_[+2]_14 chrX:2707664-2707744 0.00076 65_[+2]_7 chrX:7453994-7454074 0.00079 48_[+2]_24 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARARRRAG MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ARARRRAG width=8 seqs=56 chrV:11280247-11280327 ( 44) AGAGAGAG 1 chrI:13500354-13500434 ( 54) AGAGAGAG 1 chrII:3959844-3959924 ( 38) AGAGAGAG 1 chrIII:434499-434579 ( 58) AGAGAAAG 1 chrI:14626929-14627009 ( 65) AGAGAGAG 1 chrIII:4514031-4514111 ( 63) AGAGAGAG 1 chrI:5422348-5422428 ( 10) AGAGAGAG 1 chrIII:13065912-13065992 ( 66) AGAGAAAG 1 chrX:13504001-13504081 ( 12) AGAGAGAG 1 chrIV:1896250-1896330 ( 19) AGAGAGAG 1 chrX:852868-852948 ( 38) AGAGAGAG 1 chrV:14793323-14793403 ( 32) AGAGGAAG 1 chrX:4307629-4307709 ( 19) AGAGGGAG 1 chrII:9488951-9489031 ( 55) AGAAAGAG 1 chrIII:5940162-5940242 ( 10) AGAAAGAG 1 chrV:8797029-8797109 ( 35) AGAAAAAG 1 chrIII:4461583-4461663 ( 50) AGAAGAAG 1 chrV:4193296-4193376 ( 57) AGAAGGAG 1 chrX:9734516-9734596 ( 56) AGAAGAAG 1 chrI:788202-788282 ( 63) AGAAGGAG 1 chrX:7713064-7713144 ( 66) AGAAGAAG 1 chrII:5877774-5877854 ( 53) AAAGAGAG 1 chrV:11959908-11959988 ( 73) AAAGAAAG 1 chrV:4967403-4967483 ( 23) AAAGAAAG 1 chrX:5124489-5124569 ( 15) AAAGGAAG 1 chrI:7712513-7712593 ( 47) AAAGGAAG 1 chrIV:12546019-12546099 ( 29) AAAGGGAG 1 chrII:10065542-10065622 ( 71) AAAGGGAG 1 chrII:3597208-3597288 ( 23) AAAAAAAG 1 chrII:9266422-9266502 ( 15) AAAAAGAG 1 chrIV:9264004-9264084 ( 44) AAAAAAAG 1 chrX:7218085-7218165 ( 11) AAAAGAAG 1 chrX:5764876-5764956 ( 53) AAAAGAAG 1 chrI:2746072-2746152 ( 45) AAAAGAAG 1 chrIII:6605585-6605665 ( 24) AAAAGAAG 1 chrX:3470823-3470903 ( 17) AAAAGAAG 1 chrX:17413999-17414079 ( 4) AGAGAAGG 1 chrX:7527913-7527993 ( 63) AGAGAAAA 1 chrII:9304958-9305038 ( 28) AGAGAAAA 1 chrV:5850639-5850719 ( 42) AGAGAGAA 1 chrX:14671680-14671760 ( 24) AGAGGAGG 1 chrIV:3860502-3860582 ( 58) AGAGGGGG 1 chrI:3623935-3624015 ( 57) AGAGGAGG 1 chrX:3223279-3223359 ( 25) AGAGGAGG 1 chrI:5077797-5077877 ( 43) AGAAAGGG 1 chrV:20410460-20410540 ( 73) AGAAGAGG 1 chrIV:128636-128716 ( 70) AGAAAAAA 1 chrII:5228810-5228890 ( 60) AGAAGGGG 1 chrI:2826996-2827076 ( 40) AGAAAAAA 1 chrII:10621146-10621226 ( 66) AGAAGGAA 1 chrX:2043405-2043485 ( 2) AAAGGGAA 1 chrX:15307699-15307779 ( 64) AAAGGAAA 1 chrIII:11856111-11856191 ( 57) AAAAAGGG 1 chrII:4580971-4581051 ( 59) AAAAAGAA 1 chrX:2707664-2707744 ( 66) AGAGGAGA 1 chrX:7453994-7454074 ( 49) AGAAAGGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARARRRAG MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.3065 E= 1.5e-001 197 -1245 -1245 -1245 41 -1245 148 -1245 197 -1245 -1245 -1245 80 -1245 122 -1245 107 -1245 97 -1245 102 -1245 102 -1245 165 -1245 -27 -1245 -38 -1245 176 -1245 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARARRRAG MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 56 E= 1.5e-001 1.000000 0.000000 0.000000 0.000000 0.339286 0.000000 0.660714 0.000000 1.000000 0.000000 0.000000 0.000000 0.446429 0.000000 0.553571 0.000000 0.535714 0.000000 0.464286 0.000000 0.517857 0.000000 0.482143 0.000000 0.803571 0.000000 0.196429 0.000000 0.196429 0.000000 0.803571 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARARRRAG MEME-2 regular expression -------------------------------------------------------------------------------- A[GA]A[GA][AG][AG]AG -------------------------------------------------------------------------------- Time 11.71 secs. ******************************************************************************** ******************************************************************************** MOTIF TGCCGGAA MEME-3 width = 8 sites = 12 llr = 128 E-value = 1.9e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGCCGGAA MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::::::99 pos.-specific C ::aa::11 probability G :a::aa:: matrix T a::::::: bits 2.1 ***** 1.9 ****** 1.7 ******** 1.5 ******** Relative 1.2 ******** Entropy 1.0 ******** (15.4 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TGCCGGAA consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCCGGAA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrI:3100670-3100750 38 1.36e-05 tttgccggtt tgccggaa gtttcaattc chrIII:11856111-11856191 69 1.36e-05 aaagggaaat tgccggaa ttga chrIII:12023333-12023413 12 1.36e-05 ttcgccggtg tgccggaa aatcttaatt chrIV:2250859-2250939 56 1.36e-05 cttgctgatt tgccggaa attatcaatt chrI:11062088-11062168 60 1.36e-05 atcggaaaat tgccggaa tttaaatttc chrI:687256-687336 30 1.36e-05 tttgccgatt tgccggaa attttcattt chrIII:12341544-12341624 41 1.36e-05 accggcaaat tgccggaa ttgaacattt chrI:3205910-3205990 43 1.36e-05 tttgccaatt tgccggaa atgccgattt chrI:2258102-2258182 2 1.36e-05 t tgccggaa atttttattt chrI:1093738-1093818 23 1.36e-05 tttgccgatt tgccggaa attttcagtt chrIII:6605585-6605665 55 3.94e-05 CGTGGTGGCT TGCCGGCA CGGCACAATA chrX:7220402-7220482 55 3.94e-05 AGCCTGCTGC TGCCGGAC GGTAATGAAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCCGGAA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:3100670-3100750 1.4e-05 37_[+3]_35 chrIII:11856111-11856191 1.4e-05 68_[+3]_4 chrIII:12023333-12023413 1.4e-05 11_[+3]_61 chrIV:2250859-2250939 1.4e-05 55_[+3]_17 chrI:11062088-11062168 1.4e-05 59_[+3]_13 chrI:687256-687336 1.4e-05 29_[+3]_43 chrIII:12341544-12341624 1.4e-05 40_[+3]_32 chrI:3205910-3205990 1.4e-05 42_[+3]_30 chrI:2258102-2258182 1.4e-05 1_[+3]_71 chrI:1093738-1093818 1.4e-05 22_[+3]_50 chrIII:6605585-6605665 3.9e-05 54_[+3]_18 chrX:7220402-7220482 3.9e-05 54_[+3]_18 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCCGGAA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGCCGGAA width=8 seqs=12 chrI:3100670-3100750 ( 38) TGCCGGAA 1 chrIII:11856111-11856191 ( 69) TGCCGGAA 1 chrIII:12023333-12023413 ( 12) TGCCGGAA 1 chrIV:2250859-2250939 ( 56) TGCCGGAA 1 chrI:11062088-11062168 ( 60) TGCCGGAA 1 chrI:687256-687336 ( 30) TGCCGGAA 1 chrIII:12341544-12341624 ( 41) TGCCGGAA 1 chrI:3205910-3205990 ( 43) TGCCGGAA 1 chrI:2258102-2258182 ( 2) TGCCGGAA 1 chrI:1093738-1093818 ( 23) TGCCGGAA 1 chrIII:6605585-6605665 ( 55) TGCCGGCA 1 chrX:7220402-7220482 ( 55) TGCCGGAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCCGGAA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.0174 E= 1.9e-001 -1023 -1023 -1023 192 -1023 -1023 208 -1023 -1023 204 -1023 -1023 -1023 204 -1023 -1023 -1023 -1023 208 -1023 -1023 -1023 208 -1023 184 -154 -1023 -1023 184 -154 -1023 -1023 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCCGGAA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 12 E= 1.9e-001 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.916667 0.083333 0.000000 0.000000 0.916667 0.083333 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCCGGAA MEME-3 regular expression -------------------------------------------------------------------------------- TGCCGGAA -------------------------------------------------------------------------------- Time 15.26 secs. ******************************************************************************** ******************************************************************************** MOTIF CCYCCYYC MEME-4 width = 8 sites = 59 llr = 442 E-value = 6.6e-006 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCYCCYYC MEME-4 Description -------------------------------------------------------------------------------- Simplified A ::1::2:: pos.-specific C aa4a755a probability G ::1:1::: matrix T ::4:235: bits 2.1 ** * * 1.9 ** * * 1.7 ** * * 1.5 ** * * Relative 1.2 ** * * Entropy 1.0 ** * ** (10.8 bits) 0.8 ** ** ** 0.6 ** ***** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CCTCCCCC consensus C TT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCYCCYYC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrI:6280435-6280515 34 2.54e-05 AGACACTCCT CCTCCCCC GACCATCTGT chrIII:434499-434579 1 2.54e-05 . CCTCCCCC TCCCCCCATT chrX:760621-760701 42 2.54e-05 cccccccccc cccccccc cATGTGATGG chrIII:1162116-1162196 2 2.54e-05 A CCCCCCCC CCCCCCCTGG chrX:5140354-5140434 39 2.54e-05 cccccacccc cccccccc cccccTCTTC chrI:13417479-13417559 68 2.54e-05 CGATGGCCCC CCCCCCCC GACGC chrIII:39685-39765 55 2.54e-05 CATTAGTTAG CCCCCCCC CCCTCCATAC chrI:810736-810816 52 2.54e-05 TATTATGACC CCCCCCCC CCACCCCTCT chrX:1603148-1603228 40 2.54e-05 AAATCCGGCT CCTCCCCC CTTAATTGAC chrIII:5940162-5940242 40 2.54e-05 CAGCGACCCC CCCCCCCC CCCTCCTTTC chrIV:1904239-1904319 42 2.54e-05 GATATCTCCC CCCCCCCC CCTCCCTTCT chrV:18589674-18589754 33 5.29e-05 CCACCCACCA CCTCCCTC CCGGTCTGCG chrII:9574545-9574625 64 5.29e-05 ATGGGGGCCA CCCCCCTC TACCTAACT chrX:6953464-6953544 65 5.29e-05 CACAACAGGG CCCCCCTC GACGCGCT chrIV:175823-175903 13 5.29e-05 AAGGTCTTCG CCTCCCTC CTCTCTGTAG chrIV:3766490-3766570 12 8.05e-05 TACTCTATAA CCTCCTCC CCGCCGCTCA chrI:2552902-2552982 8 8.05e-05 CTTTGTC CCCCCTCC CCTCCTGCCA chrX:12692108-12692188 18 8.05e-05 GTTGCCCTCT CCTCCTCC TTCTCTCCCT chrX:15213490-15213570 27 8.05e-05 TCAACCACCT CCTCCTCC TCCATCCACT chrI:7715660-7715740 50 8.05e-05 ATATGCCAAC CCTCCTCC CACAAGCAGA chrX:15307699-15307779 3 8.05e-05 TC CCTCCTCC TCTTTCCCCA chrV:11341411-11341491 10 1.10e-04 GGAGACACA CCTCCTTC GTTGGCATCA chrIII:2983173-2983253 26 1.10e-04 TAGGTGAGCT CCCCCTTC TCATTAGTGC chrX:3467463-3467543 18 1.10e-04 CTATACGTCG CCCCCTTC CCTGGTTAAG chrIII:179308-179388 69 1.10e-04 CGTCACCAAT CCTCCTTC TTTG chrX:14486592-14486672 44 1.10e-04 GCACTTCTCA CCTCCTTC CATCTGTTCC chrIII:5668121-5668201 66 1.10e-04 TTCATCATTC CCTCCTTC TACGGAC chrII:3999665-3999745 14 1.10e-04 CATTTCCGTA CCCCCTTC AGTAGTCCGC chrII:6409239-6409319 21 1.37e-04 ACGATTATTG CCCCCACC AACAGAAGCA chrIII:4452890-4452970 34 1.37e-04 TTGGACTCCG CCTCCACC AACACTCGTT chrIV:9123847-9123927 71 1.37e-04 TGTTTTTTAT CCTCCACC TG chrX:3314039-3314119 57 2.06e-04 CAGACCGCCA CCCCTCCC GCCAAGACTC chrI:7195031-7195111 42 2.06e-04 ATCCCGGGGT CCTCCATC TCTTCTCCCA chrX:4576481-4576561 60 2.06e-04 CTTTCCTCTC CCCCCATC CCATCGCGAC chrV:978809-978889 65 2.48e-04 ACACATTCAT CCGCCCTC ACTATTCC chrII:10755572-10755652 17 2.48e-04 ATATGCTCAT Cctctctc tctcttctgc chrX:10990827-10990907 6 2.48e-04 TGCTG CCTCTCTC TCTCTCGTCT chrII:7809523-7809603 47 2.48e-04 AAGCTAATTT CCTCTCTC TTATTTTTCT chrX:11033260-11033340 64 2.48e-04 TCTCTTCGTT CCCCTCTC TTTAATCCT chrV:6684700-6684780 51 2.48e-04 AAACTAAATG CCTCTCTC GTGTAATTAC chrIII:4451189-4451269 44 2.73e-04 AACAGGGGGA CCCCGCCC TATATTGTAG chrX:4761613-4761693 52 2.73e-04 TAATGAGTAG CCCCGCCC CACCATTCAA chrII:11040009-11040089 19 3.56e-04 ATTACTTAGG CCTCGCTC TGTCCGCCTT chrI:4312778-4312858 30 3.56e-04 TCCTTGTTGT CCTCTTCC TCTTTCCGTC chrIV:3337464-3337544 13 3.56e-04 gccttgaccg ccgcctcc ttgcTGTCCC chrI:3623935-3624015 9 3.56e-04 AGTTACCT CCCCTTCC ATTTCTCCCC chrV:14498382-14498462 7 4.16e-04 ATTAGA CCACCCTC AAAACCACAC chrIV:14032770-14032850 52 4.43e-04 TTCATCTTTC CCCCGTCC TCCTACTTCT chrX:6807601-6807681 55 4.43e-04 CGCTACTATT CCTCGTCC TCCTTTCATA chrI:6285771-6285851 57 4.86e-04 GCCAATCTTT CCTCGTTC CGACGCTCGT chrIV:13028376-13028456 73 4.86e-04 GCCGCCCTTC CCCCGTTC chrIV:1377773-1377853 6 5.28e-04 GACCG CCGCCACC GGGGGGGGGG chrII:6522802-6522882 45 6.41e-04 ACGAGGACAC CCGCTCTC TTGTCCACTC chrV:20061670-20061750 46 6.41e-04 ATTTTTCTCG CCGCTCTC TTTGTTTTCC chrX:4762986-4763066 69 6.41e-04 GCTTACCCGC CCGCTCTC ATGT chrX:2879795-2879875 25 6.94e-04 TACGCGGCCA CCCCGATC GCAttcttct chrI:11089386-11089466 70 6.94e-04 aacaccacca ccaccacc aAA chrIV:1920274-1920354 55 6.94e-04 TGGTCCACTA CCACCACC ACTACCCATC chrX:4881419-4881499 12 7.49e-04 CCGCCACACC CCACCATC GATTGAGCGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCYCCYYC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:6280435-6280515 2.5e-05 33_[+4]_39 chrIII:434499-434579 2.5e-05 [+4]_72 chrX:760621-760701 2.5e-05 41_[+4]_31 chrIII:1162116-1162196 2.5e-05 1_[+4]_71 chrX:5140354-5140434 2.5e-05 38_[+4]_34 chrI:13417479-13417559 2.5e-05 67_[+4]_5 chrIII:39685-39765 2.5e-05 54_[+4]_18 chrI:810736-810816 2.5e-05 51_[+4]_21 chrX:1603148-1603228 2.5e-05 39_[+4]_33 chrIII:5940162-5940242 2.5e-05 39_[+4]_33 chrIV:1904239-1904319 2.5e-05 41_[+4]_31 chrV:18589674-18589754 5.3e-05 32_[+4]_40 chrII:9574545-9574625 5.3e-05 63_[+4]_9 chrX:6953464-6953544 5.3e-05 64_[+4]_8 chrIV:175823-175903 5.3e-05 12_[+4]_60 chrIV:3766490-3766570 8e-05 11_[+4]_61 chrI:2552902-2552982 8e-05 7_[+4]_65 chrX:12692108-12692188 8e-05 17_[+4]_55 chrX:15213490-15213570 8e-05 26_[+4]_46 chrI:7715660-7715740 8e-05 49_[+4]_23 chrX:15307699-15307779 8e-05 2_[+4]_70 chrV:11341411-11341491 0.00011 9_[+4]_63 chrIII:2983173-2983253 0.00011 25_[+4]_47 chrX:3467463-3467543 0.00011 17_[+4]_55 chrIII:179308-179388 0.00011 68_[+4]_4 chrX:14486592-14486672 0.00011 43_[+4]_29 chrIII:5668121-5668201 0.00011 65_[+4]_7 chrII:3999665-3999745 0.00011 13_[+4]_59 chrII:6409239-6409319 0.00014 20_[+4]_52 chrIII:4452890-4452970 0.00014 33_[+4]_39 chrIV:9123847-9123927 0.00014 70_[+4]_2 chrX:3314039-3314119 0.00021 56_[+4]_16 chrI:7195031-7195111 0.00021 41_[+4]_31 chrX:4576481-4576561 0.00021 59_[+4]_13 chrV:978809-978889 0.00025 64_[+4]_8 chrII:10755572-10755652 0.00025 16_[+4]_56 chrX:10990827-10990907 0.00025 5_[+4]_67 chrII:7809523-7809603 0.00025 46_[+4]_26 chrX:11033260-11033340 0.00025 63_[+4]_9 chrV:6684700-6684780 0.00025 50_[+4]_22 chrIII:4451189-4451269 0.00027 43_[+4]_29 chrX:4761613-4761693 0.00027 51_[+4]_21 chrII:11040009-11040089 0.00036 18_[+4]_54 chrI:4312778-4312858 0.00036 29_[+4]_43 chrIV:3337464-3337544 0.00036 12_[+4]_60 chrI:3623935-3624015 0.00036 8_[+4]_64 chrV:14498382-14498462 0.00042 6_[+4]_66 chrIV:14032770-14032850 0.00044 51_[+4]_21 chrX:6807601-6807681 0.00044 54_[+4]_18 chrI:6285771-6285851 0.00049 56_[+4]_16 chrIV:13028376-13028456 0.00049 72_[+4] chrIV:1377773-1377853 0.00053 5_[+4]_67 chrII:6522802-6522882 0.00064 44_[+4]_28 chrV:20061670-20061750 0.00064 45_[+4]_27 chrX:4762986-4763066 0.00064 68_[+4]_4 chrX:2879795-2879875 0.00069 24_[+4]_48 chrI:11089386-11089466 0.00069 69_[+4]_3 chrIV:1920274-1920354 0.00069 54_[+4]_18 chrX:4881419-4881499 0.00075 11_[+4]_61 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCYCCYYC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCYCCYYC width=8 seqs=59 chrI:6280435-6280515 ( 34) CCTCCCCC 1 chrIII:434499-434579 ( 1) CCTCCCCC 1 chrX:760621-760701 ( 42) CCCCCCCC 1 chrIII:1162116-1162196 ( 2) CCCCCCCC 1 chrX:5140354-5140434 ( 39) CCCCCCCC 1 chrI:13417479-13417559 ( 68) CCCCCCCC 1 chrIII:39685-39765 ( 55) CCCCCCCC 1 chrI:810736-810816 ( 52) CCCCCCCC 1 chrX:1603148-1603228 ( 40) CCTCCCCC 1 chrIII:5940162-5940242 ( 40) CCCCCCCC 1 chrIV:1904239-1904319 ( 42) CCCCCCCC 1 chrV:18589674-18589754 ( 33) CCTCCCTC 1 chrII:9574545-9574625 ( 64) CCCCCCTC 1 chrX:6953464-6953544 ( 65) CCCCCCTC 1 chrIV:175823-175903 ( 13) CCTCCCTC 1 chrIV:3766490-3766570 ( 12) CCTCCTCC 1 chrI:2552902-2552982 ( 8) CCCCCTCC 1 chrX:12692108-12692188 ( 18) CCTCCTCC 1 chrX:15213490-15213570 ( 27) CCTCCTCC 1 chrI:7715660-7715740 ( 50) CCTCCTCC 1 chrX:15307699-15307779 ( 3) CCTCCTCC 1 chrV:11341411-11341491 ( 10) CCTCCTTC 1 chrIII:2983173-2983253 ( 26) CCCCCTTC 1 chrX:3467463-3467543 ( 18) CCCCCTTC 1 chrIII:179308-179388 ( 69) CCTCCTTC 1 chrX:14486592-14486672 ( 44) CCTCCTTC 1 chrIII:5668121-5668201 ( 66) CCTCCTTC 1 chrII:3999665-3999745 ( 14) CCCCCTTC 1 chrII:6409239-6409319 ( 21) CCCCCACC 1 chrIII:4452890-4452970 ( 34) CCTCCACC 1 chrIV:9123847-9123927 ( 71) CCTCCACC 1 chrX:3314039-3314119 ( 57) CCCCTCCC 1 chrI:7195031-7195111 ( 42) CCTCCATC 1 chrX:4576481-4576561 ( 60) CCCCCATC 1 chrV:978809-978889 ( 65) CCGCCCTC 1 chrII:10755572-10755652 ( 17) CCTCTCTC 1 chrX:10990827-10990907 ( 6) CCTCTCTC 1 chrII:7809523-7809603 ( 47) CCTCTCTC 1 chrX:11033260-11033340 ( 64) CCCCTCTC 1 chrV:6684700-6684780 ( 51) CCTCTCTC 1 chrIII:4451189-4451269 ( 44) CCCCGCCC 1 chrX:4761613-4761693 ( 52) CCCCGCCC 1 chrII:11040009-11040089 ( 19) CCTCGCTC 1 chrI:4312778-4312858 ( 30) CCTCTTCC 1 chrIV:3337464-3337544 ( 13) CCGCCTCC 1 chrI:3623935-3624015 ( 9) CCCCTTCC 1 chrV:14498382-14498462 ( 7) CCACCCTC 1 chrIV:14032770-14032850 ( 52) CCCCGTCC 1 chrX:6807601-6807681 ( 55) CCTCGTCC 1 chrI:6285771-6285851 ( 57) CCTCGTTC 1 chrIV:13028376-13028456 ( 73) CCCCGTTC 1 chrIV:1377773-1377853 ( 6) CCGCCACC 1 chrII:6522802-6522882 ( 45) CCGCTCTC 1 chrV:20061670-20061750 ( 46) CCGCTCTC 1 chrX:4762986-4763066 ( 69) CCGCTCTC 1 chrX:2879795-2879875 ( 25) CCCCGATC 1 chrI:11089386-11089466 ( 70) CCACCACC 1 chrIV:1920274-1920354 ( 55) CCACCACC 1 chrX:4881419-4881499 ( 12) CCACCATC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCYCCYYC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.9683 E= 6.6e-006 -1253 204 -1253 -1253 -1253 204 -1253 -1253 -192 74 -122 68 -1253 204 -1253 -1253 -1253 148 -81 -50 -59 102 -1253 36 -1253 111 -1253 85 -1253 204 -1253 -1253 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCYCCYYC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 59 E= 6.6e-006 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.067797 0.406780 0.101695 0.423729 0.000000 1.000000 0.000000 0.000000 0.000000 0.677966 0.135593 0.186441 0.169492 0.491525 0.000000 0.338983 0.000000 0.525424 0.000000 0.474576 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCYCCYYC MEME-4 regular expression -------------------------------------------------------------------------------- CC[TC]CC[CT][CT]C -------------------------------------------------------------------------------- Time 18.88 secs. ******************************************************************************** ******************************************************************************** MOTIF KVYAATTA MEME-5 width = 8 sites = 96 llr = 620 E-value = 9.0e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif KVYAATTA MEME-5 Description -------------------------------------------------------------------------------- Simplified A 121aa::6 pos.-specific C 143::::: probability G 43:::::2 matrix T 416::aa3 bits 2.1 1.9 **** 1.7 **** 1.5 **** Relative 1.2 **** Entropy 1.0 **** (9.3 bits) 0.8 **** 0.6 ****** 0.4 ****** 0.2 ******** 0.0 -------- Multilevel GCTAATTA consensus TGC T sequence A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KVYAATTA MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrV:1473979-1474059 69 1.78e-05 AGTTCCTTTC GCTAATTA CTCT chrIV:7521615-7521695 28 1.78e-05 GAAACTACTT GCTAATTA ATTTTGGAAA chrX:852868-852948 63 1.78e-05 ACTGACTGTG GCTAATTA TGAGACGTAA chrIII:4519553-4519633 17 3.51e-05 CCATGATTAC GGTAATTA CTGATTTTTC chrX:17413999-17414079 48 3.51e-05 ATAATAAGCA GGTAATTA GAACGGAAGA chrV:14832364-14832444 16 5.49e-05 TGAGGTGAAT TCTAATTA GCGAAACGGA chrIII:9451111-9451191 39 5.49e-05 TCCAAGCGAG TCTAATTA CGGTAGTGGT chrV:6485255-6485335 23 5.49e-05 CCCCGAAGGC TCTAATTA AAGGTGAGAG chrI:6280435-6280515 72 1.09e-04 GGGGAGAACA GATAATTA T chrIV:3766490-3766570 52 1.09e-04 TATGCACCCA GATAATTA GTAACATCGT chrIII:13064770-13064850 43 1.09e-04 ATAATTTGGG GATAATTA AAATTTTTAT chrX:4881419-4881499 28 1.09e-04 TCGATTGAGC GATAATTA GCAAACATAT chrIV:5093581-5093661 33 1.09e-04 TGAATAAGGG TGTAATTA GGTGGCGGAG chrII:10374932-10375012 63 1.09e-04 TTGGTTTAAG TGTAATTA GGAGGACAGA chrX:2044832-2044912 16 1.09e-04 GATTCAAATT TGTAATTA AGTGTCGTCG chrV:6684700-6684780 60 1.09e-04 GCCTCTCTCG TGTAATTA CAATCCAATT chrV:8797029-8797109 64 1.09e-04 ATATATGTAT GCCAATTA TCCTGACAA chrV:978809-978889 34 1.83e-04 AAATGACACC TCCAATTA TCTGCTCACA chrX:8401579-8401659 47 1.83e-04 CCCAAAATCC TATAATTA CTCTATAAAG chrII:7809523-7809603 39 1.83e-04 CCCACGGAAA GCTAATTT CCTCTCTCTT chrI:14962326-14962406 19 1.83e-04 ACAGACTGCC TCCAATTA AGAGCTCTTC chrI:8783860-8783940 73 1.83e-04 GGCACTCAAT TATAATTA chrI:3993706-3993786 22 1.83e-04 TTATAGAAAG TATAATTA ACGGGGTGAG chrV:14792487-14792567 35 1.83e-04 TGACACAACA TATAATTA ATTGGTGTGA chrII:6940031-6940111 10 1.83e-04 GGCAAAGAG TCCAATTA CCACTGAATT chrII:6411924-6412004 63 2.36e-04 AACCAAGGGG GACAATTA GCAATTATGC chrV:18589674-18589754 14 2.92e-04 GTATGCTAAT GTTAATTA GCCACCCACC chrI:1740976-1741056 66 2.92e-04 tgtcagagtg tctaattt cggcttg chrV:9395380-9395460 1 2.92e-04 . TCTAATTT TCTCTTTTTA chrIII:4451189-4451269 61 2.92e-04 CTATATTGTA GCTAATTG CTGGGTGTAC chrI:8137168-8137248 9 2.92e-04 ATTGCTCT TCTAATTT TCTACCACTG chrIII:2913047-2913127 71 2.92e-04 ATGCAGATGG GTTAATTA TA chrX:4759873-4759953 65 2.92e-04 TGGTCCATCG GTTAATTA TCTCAATG chrI:14833928-14834008 41 4.00e-04 ACTCACTTTA TACAATTA TGGAATTACG chrI:11098310-11098390 2 4.00e-04 t gccaattt GCCGGTTCGT chrI:6289826-6289906 39 4.00e-04 aagagtgtac tgtaattt caaccttccg chrX:1244423-1244503 33 4.00e-04 AATCGATGAC GCAAATTA CCTGCACTCT chrII:6522802-6522882 67 4.00e-04 CCACTCGATT TACAATTA CTCATT chrI:2258102-2258182 22 4.00e-04 ttttattttc ggtaattg ccgtttttcc chrX:12688806-12688886 66 4.00e-04 GGACCACCTT GCAAATTA GCATAAC chrX:4762986-4763066 40 4.00e-04 CATGATATAC GGTAATTG GGACCCAAGA chrIV:12546019-12546099 71 4.40e-04 ATCCCCGAGT TTTAATTA GT chrIV:9123847-9123927 26 4.40e-04 TTTGAATATA TCTAATTG GTCCTCCATT chrII:7814406-7814486 47 4.40e-04 ATGTTTTCCT TTTAATTA AAACAGGCGG chrI:3100670-3100750 57 5.11e-04 tttcaattcc ggcaattt gccgcaaaat chrIII:11856111-11856191 12 5.11e-04 ctggcaaatc ggcaattt gccgaaaatc chrII:2832685-2832765 12 5.11e-04 CACACAGGCA GGCAATTT TCCCGCCCAT chrI:7714691-7714771 42 5.11e-04 TAATGGACCC ACTAATTA AGAGATACAA chrX:4869825-4869905 17 5.11e-04 ACACCGAAAA GGCAATTT GGATGAGAGG chrI:687256-687336 7 5.11e-04 attttc ggcaattt gccggtttgc chrX:2920620-2920700 55 5.11e-04 TTTCCATCTC CCTAATTA TCGAGTAATT chrIV:3860502-3860582 41 5.11e-04 GGGAGGTACA GGAAATTA GAGGGTATTA chrII:10621146-10621226 13 5.11e-04 CGATGCGGTC ACTAATTA CAGTGTGCAA chrI:1093738-1093818 8 5.11e-04 caatacc ggcaattt gccgatttgc chrI:3338383-3338463 9 6.39e-04 CGAGATAT TCCAATTT GCTATTTCTC chrI:2552902-2552982 32 6.39e-04 GCCATTTTCA GTCAATTA GTCATTAACT chrII:6441117-6441197 27 6.39e-04 AAAAGTTCGA GTCAATTA TACGGTATGT chrI:6746651-6746731 1 6.39e-04 . GATAATTG GTTGGATGTG chrIII:4452890-4452970 68 6.39e-04 TCTGCGTCTC TATAATTT GATGC chrIV:13028376-13028456 46 6.39e-04 CACGTTTCGA TCCAATTT GTCGTCCGCG chrX:2045034-2045114 19 6.75e-04 CAATGCATTG CGTAATTA TGGCTCGTTG chrX:3467463-3467543 34 6.75e-04 TCCCTGGTTA AGTAATTA TTCCAATTCG chrI:11089386-11089466 33 6.75e-04 TACACACTTG CGTAATTA CTCTTTTCAT chrII:11040009-11040089 5 7.63e-04 ACTG GAAAATTA CTTAGGCCTC chrX:8603190-8603270 41 7.63e-04 ggaaaatggg gaaaatta gggaaaatgg chrX:9510048-9510128 23 7.63e-04 CTGCAGTCAG TGCAATTT CTTGTTTTCC chrII:10373699-10373779 47 7.63e-04 CGATGGAAAA TGCAATTT TCTGTGAGAG chrIII:13525652-13525732 24 7.63e-04 ACAACAATTG TGCAATTT TCCTGGCTGG chrV:19630872-19630952 30 8.39e-04 aattcaaatt ttcaatta atttttggcg chrV:20457497-20457577 3 8.39e-04 CC TATAATTG CAACATCAAA chrIII:4005555-4005635 36 9.13e-04 CATTGGTCCC AATAATTA TCCATCGAAA chrX:3977385-3977465 70 9.13e-04 CAATGAGGAA AATAATTA GAG chrV:5846829-5846909 30 9.13e-04 ATGGTCGGTC ACCAATTA TAGTGGCAGA chrII:5418479-5418559 20 1.00e-03 TCTCTCACAC GCAAATTT TCGAGGGTTG chrV:4967403-4967483 41 1.00e-03 GAGGTCCCGA GACAATTG CACGTAATGA chrII:11890735-11890815 26 1.00e-03 CAGTGGGTAT TGCAATTG TACGTACTGT chrIV:13410379-13410459 66 1.00e-03 cggcaagtcg gacaattg ccggttg chrII:10065542-10065622 27 1.00e-03 GGGGGGCAAA TAAAATTA AAAACGGGGG chrV:11852500-11852580 32 1.08e-03 CGAGTTACTT TTTAATTT CCTGAAAGCT chrIV:3521838-3521918 59 1.08e-03 GCCTCGTCAT CGCAATTA GCCACTGGTT chrIV:2250859-2250939 26 1.13e-03 ctgatttgcc ggaaattt caattccggc chrII:3597208-3597288 66 1.13e-03 TACTTATGTG CCTAATTT CTAGGTG chrIII:12341544-12341624 69 1.13e-03 ctggcaaacc ggaaattt gccg chrI:3205910-3205990 11 1.13e-03 ccgatttgcc ggaaattt gccagaaatg chrII:9304958-9305038 60 1.22e-03 GGGGTATTAT GCAAATTG AGAAGGCGAG chrX:4753082-4753162 5 1.32e-03 GTTC TTTAATTG GAATCCGTTT chrV:11947315-11947395 48 1.32e-03 TGTACCTCAA AACAATTA ATTTTTCATT chrI:4973189-4973269 13 1.45e-03 TCTGTGTCTC CTTAATTA ACATGTTCTC chrI:14626929-14627009 50 1.45e-03 AACAAAAGAA GGAAATTG gagagagaga chrI:2709713-2709793 67 1.45e-03 GATCCCCCAT ACTAATTG CATTTT chrX:3310768-3310848 38 1.45e-03 GTGTGGTGTG ACTAATTG ATGGTTGTTA chrIV:2488044-2488124 50 1.45e-03 ctaccttata cctaattg cctgcctaat chrX:2043405-2043485 60 1.45e-03 TGAAAAGGCA CCTAATTG CCAGGAAAGC chrIV:10867951-10868031 44 1.45e-03 CCATAAGTTG CTTAATTA TGTGCTATTG chrV:11959908-11959988 2 1.52e-03 T TCAAATTG GTGTGAAGAG chrV:20410460-20410540 4 1.67e-03 CCA ACCAATTT CTCGTCGCAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KVYAATTA MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:1473979-1474059 1.8e-05 68_[+5]_4 chrIV:7521615-7521695 1.8e-05 27_[+5]_45 chrX:852868-852948 1.8e-05 62_[+5]_10 chrIII:4519553-4519633 3.5e-05 16_[+5]_56 chrX:17413999-17414079 3.5e-05 47_[+5]_25 chrV:14832364-14832444 5.5e-05 15_[+5]_57 chrIII:9451111-9451191 5.5e-05 38_[+5]_34 chrV:6485255-6485335 5.5e-05 22_[+5]_50 chrI:6280435-6280515 0.00011 71_[+5]_1 chrIV:3766490-3766570 0.00011 51_[+5]_21 chrIII:13064770-13064850 0.00011 42_[+5]_30 chrX:4881419-4881499 0.00011 27_[+5]_45 chrIV:5093581-5093661 0.00011 32_[+5]_40 chrII:10374932-10375012 0.00011 62_[+5]_10 chrX:2044832-2044912 0.00011 15_[+5]_57 chrV:6684700-6684780 0.00011 59_[+5]_13 chrV:8797029-8797109 0.00011 63_[+5]_9 chrV:978809-978889 0.00018 33_[+5]_39 chrX:8401579-8401659 0.00018 46_[+5]_26 chrII:7809523-7809603 0.00018 38_[+5]_34 chrI:14962326-14962406 0.00018 18_[+5]_54 chrI:8783860-8783940 0.00018 72_[+5] chrI:3993706-3993786 0.00018 21_[+5]_51 chrV:14792487-14792567 0.00018 34_[+5]_38 chrII:6940031-6940111 0.00018 9_[+5]_63 chrII:6411924-6412004 0.00024 62_[+5]_10 chrV:18589674-18589754 0.00029 13_[+5]_59 chrI:1740976-1741056 0.00029 65_[+5]_7 chrV:9395380-9395460 0.00029 [+5]_72 chrIII:4451189-4451269 0.00029 60_[+5]_12 chrI:8137168-8137248 0.00029 8_[+5]_64 chrIII:2913047-2913127 0.00029 70_[+5]_2 chrX:4759873-4759953 0.00029 64_[+5]_8 chrI:14833928-14834008 0.0004 40_[+5]_32 chrI:11098310-11098390 0.0004 1_[+5]_71 chrI:6289826-6289906 0.0004 38_[+5]_34 chrX:1244423-1244503 0.0004 32_[+5]_40 chrII:6522802-6522882 0.0004 66_[+5]_6 chrI:2258102-2258182 0.0004 21_[+5]_51 chrX:12688806-12688886 0.0004 65_[+5]_7 chrX:4762986-4763066 0.0004 39_[+5]_33 chrIV:12546019-12546099 0.00044 70_[+5]_2 chrIV:9123847-9123927 0.00044 25_[+5]_47 chrII:7814406-7814486 0.00044 46_[+5]_26 chrI:3100670-3100750 0.00051 56_[+5]_16 chrIII:11856111-11856191 0.00051 11_[+5]_61 chrII:2832685-2832765 0.00051 11_[+5]_61 chrI:7714691-7714771 0.00051 41_[+5]_31 chrX:4869825-4869905 0.00051 16_[+5]_56 chrI:687256-687336 0.00051 6_[+5]_66 chrX:2920620-2920700 0.00051 54_[+5]_18 chrIV:3860502-3860582 0.00051 40_[+5]_32 chrII:10621146-10621226 0.00051 12_[+5]_60 chrI:1093738-1093818 0.00051 7_[+5]_65 chrI:3338383-3338463 0.00064 8_[+5]_64 chrI:2552902-2552982 0.00064 31_[+5]_41 chrII:6441117-6441197 0.00064 26_[+5]_46 chrI:6746651-6746731 0.00064 [+5]_72 chrIII:4452890-4452970 0.00064 67_[+5]_5 chrIV:13028376-13028456 0.00064 45_[+5]_27 chrX:2045034-2045114 0.00068 18_[+5]_54 chrX:3467463-3467543 0.00068 33_[+5]_39 chrI:11089386-11089466 0.00068 32_[+5]_40 chrII:11040009-11040089 0.00076 4_[+5]_68 chrX:8603190-8603270 0.00076 40_[+5]_32 chrX:9510048-9510128 0.00076 22_[+5]_50 chrII:10373699-10373779 0.00076 46_[+5]_26 chrIII:13525652-13525732 0.00076 23_[+5]_49 chrV:19630872-19630952 0.00084 29_[+5]_43 chrV:20457497-20457577 0.00084 2_[+5]_70 chrIII:4005555-4005635 0.00091 35_[+5]_37 chrX:3977385-3977465 0.00091 69_[+5]_3 chrV:5846829-5846909 0.00091 29_[+5]_43 chrII:5418479-5418559 0.001 19_[+5]_53 chrV:4967403-4967483 0.001 40_[+5]_32 chrII:11890735-11890815 0.001 25_[+5]_47 chrIV:13410379-13410459 0.001 65_[+5]_7 chrII:10065542-10065622 0.001 26_[+5]_46 chrV:11852500-11852580 0.0011 31_[+5]_41 chrIV:3521838-3521918 0.0011 58_[+5]_14 chrIV:2250859-2250939 0.0011 25_[+5]_47 chrII:3597208-3597288 0.0011 65_[+5]_7 chrIII:12341544-12341624 0.0011 68_[+5]_4 chrI:3205910-3205990 0.0011 10_[+5]_62 chrII:9304958-9305038 0.0012 59_[+5]_13 chrX:4753082-4753162 0.0013 4_[+5]_68 chrV:11947315-11947395 0.0013 47_[+5]_25 chrI:4973189-4973269 0.0014 12_[+5]_60 chrI:14626929-14627009 0.0014 49_[+5]_23 chrI:2709713-2709793 0.0014 66_[+5]_6 chrX:3310768-3310848 0.0014 37_[+5]_35 chrIV:2488044-2488124 0.0014 49_[+5]_23 chrX:2043405-2043485 0.0014 59_[+5]_13 chrIV:10867951-10868031 0.0014 43_[+5]_29 chrV:11959908-11959988 0.0015 1_[+5]_71 chrV:20410460-20410540 0.0017 3_[+5]_69 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KVYAATTA MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF KVYAATTA width=8 seqs=96 chrV:1473979-1474059 ( 69) GCTAATTA 1 chrIV:7521615-7521695 ( 28) GCTAATTA 1 chrX:852868-852948 ( 63) GCTAATTA 1 chrIII:4519553-4519633 ( 17) GGTAATTA 1 chrX:17413999-17414079 ( 48) GGTAATTA 1 chrV:14832364-14832444 ( 16) TCTAATTA 1 chrIII:9451111-9451191 ( 39) TCTAATTA 1 chrV:6485255-6485335 ( 23) TCTAATTA 1 chrI:6280435-6280515 ( 72) GATAATTA 1 chrIV:3766490-3766570 ( 52) GATAATTA 1 chrIII:13064770-13064850 ( 43) GATAATTA 1 chrX:4881419-4881499 ( 28) GATAATTA 1 chrIV:5093581-5093661 ( 33) TGTAATTA 1 chrII:10374932-10375012 ( 63) TGTAATTA 1 chrX:2044832-2044912 ( 16) TGTAATTA 1 chrV:6684700-6684780 ( 60) TGTAATTA 1 chrV:8797029-8797109 ( 64) GCCAATTA 1 chrV:978809-978889 ( 34) TCCAATTA 1 chrX:8401579-8401659 ( 47) TATAATTA 1 chrII:7809523-7809603 ( 39) GCTAATTT 1 chrI:14962326-14962406 ( 19) TCCAATTA 1 chrI:8783860-8783940 ( 73) TATAATTA 1 chrI:3993706-3993786 ( 22) TATAATTA 1 chrV:14792487-14792567 ( 35) TATAATTA 1 chrII:6940031-6940111 ( 10) TCCAATTA 1 chrII:6411924-6412004 ( 63) GACAATTA 1 chrV:18589674-18589754 ( 14) GTTAATTA 1 chrI:1740976-1741056 ( 66) TCTAATTT 1 chrV:9395380-9395460 ( 1) TCTAATTT 1 chrIII:4451189-4451269 ( 61) GCTAATTG 1 chrI:8137168-8137248 ( 9) TCTAATTT 1 chrIII:2913047-2913127 ( 71) GTTAATTA 1 chrX:4759873-4759953 ( 65) GTTAATTA 1 chrI:14833928-14834008 ( 41) TACAATTA 1 chrI:11098310-11098390 ( 2) GCCAATTT 1 chrI:6289826-6289906 ( 39) TGTAATTT 1 chrX:1244423-1244503 ( 33) GCAAATTA 1 chrII:6522802-6522882 ( 67) TACAATTA 1 chrI:2258102-2258182 ( 22) GGTAATTG 1 chrX:12688806-12688886 ( 66) GCAAATTA 1 chrX:4762986-4763066 ( 40) GGTAATTG 1 chrIV:12546019-12546099 ( 71) TTTAATTA 1 chrIV:9123847-9123927 ( 26) TCTAATTG 1 chrII:7814406-7814486 ( 47) TTTAATTA 1 chrI:3100670-3100750 ( 57) GGCAATTT 1 chrIII:11856111-11856191 ( 12) GGCAATTT 1 chrII:2832685-2832765 ( 12) GGCAATTT 1 chrI:7714691-7714771 ( 42) ACTAATTA 1 chrX:4869825-4869905 ( 17) GGCAATTT 1 chrI:687256-687336 ( 7) GGCAATTT 1 chrX:2920620-2920700 ( 55) CCTAATTA 1 chrIV:3860502-3860582 ( 41) GGAAATTA 1 chrII:10621146-10621226 ( 13) ACTAATTA 1 chrI:1093738-1093818 ( 8) GGCAATTT 1 chrI:3338383-3338463 ( 9) TCCAATTT 1 chrI:2552902-2552982 ( 32) GTCAATTA 1 chrII:6441117-6441197 ( 27) GTCAATTA 1 chrI:6746651-6746731 ( 1) GATAATTG 1 chrIII:4452890-4452970 ( 68) TATAATTT 1 chrIV:13028376-13028456 ( 46) TCCAATTT 1 chrX:2045034-2045114 ( 19) CGTAATTA 1 chrX:3467463-3467543 ( 34) AGTAATTA 1 chrI:11089386-11089466 ( 33) CGTAATTA 1 chrII:11040009-11040089 ( 5) GAAAATTA 1 chrX:8603190-8603270 ( 41) GAAAATTA 1 chrX:9510048-9510128 ( 23) TGCAATTT 1 chrII:10373699-10373779 ( 47) TGCAATTT 1 chrIII:13525652-13525732 ( 24) TGCAATTT 1 chrV:19630872-19630952 ( 30) TTCAATTA 1 chrV:20457497-20457577 ( 3) TATAATTG 1 chrIII:4005555-4005635 ( 36) AATAATTA 1 chrX:3977385-3977465 ( 70) AATAATTA 1 chrV:5846829-5846909 ( 30) ACCAATTA 1 chrII:5418479-5418559 ( 20) GCAAATTT 1 chrV:4967403-4967483 ( 41) GACAATTG 1 chrII:11890735-11890815 ( 26) TGCAATTG 1 chrIV:13410379-13410459 ( 66) GACAATTG 1 chrII:10065542-10065622 ( 27) TAAAATTA 1 chrV:11852500-11852580 ( 32) TTTAATTT 1 chrIV:3521838-3521918 ( 59) CGCAATTA 1 chrIV:2250859-2250939 ( 26) GGAAATTT 1 chrII:3597208-3597288 ( 66) CCTAATTT 1 chrIII:12341544-12341624 ( 69) GGAAATTT 1 chrI:3205910-3205990 ( 11) GGAAATTT 1 chrII:9304958-9305038 ( 60) GCAAATTG 1 chrX:4753082-4753162 ( 5) TTTAATTG 1 chrV:11947315-11947395 ( 48) AACAATTA 1 chrI:4973189-4973269 ( 13) CTTAATTA 1 chrI:14626929-14627009 ( 50) GGAAATTG 1 chrI:2709713-2709793 ( 67) ACTAATTG 1 chrX:3310768-3310848 ( 38) ACTAATTG 1 chrIV:2488044-2488124 ( 50) CCTAATTG 1 chrX:2043405-2043485 ( 60) CCTAATTG 1 chrIV:10867951-10868031 ( 44) CTTAATTA 1 chrV:11959908-11959988 ( 2) TCAAATTG 1 chrV:20410460-20410540 ( 4) ACCAATTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KVYAATTA MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.66664 E= 9.0e+000 -130 -137 85 51 -16 54 30 -108 -92 31 -1323 109 197 -1323 -1323 -1323 197 -1323 -1323 -1323 -1323 -1323 -1323 192 -1323 -1323 -1323 192 114 -1323 -42 -2 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KVYAATTA MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 96 E= 9.0e+000 0.104167 0.093750 0.427083 0.375000 0.229167 0.354167 0.291667 0.125000 0.135417 0.302083 0.000000 0.562500 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.562500 0.000000 0.177083 0.260417 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KVYAATTA MEME-5 regular expression -------------------------------------------------------------------------------- [GT][CGA][TC]AATT[AT] -------------------------------------------------------------------------------- Time 22.38 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:4760864-4760944 9.28e-01 80 chrX:4759873-4759953 2.46e-01 80 chrIII:2913047-2913127 3.96e-03 27_[+1(9.95e-06)]_[+1(9.95e-06)]_37 chrX:4761613-4761693 1.61e-01 80 chrX:4762986-4763066 1.39e-01 80 chrX:17413999-17414079 6.03e-03 47_[+5(3.51e-05)]_25 chrX:852868-852948 6.16e-04 25_[+2(5.43e-05)]_4_[+2(2.82e-05)]_\ 17_[+5(1.78e-05)]_10 chrI:2826996-2827076 9.77e-03 68_[+1(9.95e-06)]_4 chrX:2707664-2707744 9.75e-02 80 chrIV:10867951-10868031 5.58e-01 80 chrX:3223279-3223359 5.71e-02 80 chrV:8797029-8797109 1.11e-02 34_[+2(8.47e-05)]_38 chrI:14137699-14137779 7.45e-01 80 chrI:8137168-8137248 1.83e-01 80 chrIV:2981604-2981684 4.08e-01 80 chrX:10926085-10926165 4.89e-01 80 chrV:6684700-6684780 8.92e-03 80 chrX:7220402-7220482 2.12e-02 54_[+3(3.94e-05)]_18 chrX:14329487-14329567 2.80e-01 80 chrX:3469469-3469549 2.64e-01 80 chrII:10065542-10065622 1.28e-03 11_[+1(9.95e-06)]_61 chrX:15307699-15307779 4.70e-02 2_[+4(8.05e-05)]_70 chrX:3470823-3470903 4.34e-02 80 chrII:6940031-6940111 4.40e-01 80 chrI:3623935-3624015 2.74e-02 80 chrX:8569318-8569398 8.44e-01 80 chrIV:12617403-12617483 5.71e-01 80 chrIV:1904239-1904319 1.60e-03 [+1(9.95e-06)]_30_[+4(2.54e-05)]_\ [+4(8.05e-05)]_26 chrII:7814406-7814486 2.98e-01 80 chrX:2044832-2044912 9.23e-02 80 chrII:10374932-10375012 1.02e-01 80 chrIV:175823-175903 1.20e-01 12_[+4(5.29e-05)]_60 chrV:14792487-14792567 1.28e-02 80 chrX:7453994-7454074 1.06e-01 80 chrX:8182146-8182226 8.55e-01 80 chrV:20061670-20061750 5.28e-01 80 chrX:2583449-2583529 2.07e-02 29_[+1(9.95e-06)]_[+1(9.95e-06)]_35 chrIV:3521838-3521918 2.06e-01 80 chrIV:7521615-7521695 2.44e-02 27_[+5(1.78e-05)]_45 chrIV:5093581-5093661 4.12e-02 80 chrI:14805095-14805175 4.96e-01 80 chrX:12688806-12688886 4.58e-02 80 chrX:7713064-7713144 1.25e-01 80 chrI:1093738-1093818 2.53e-02 22_[+3(1.36e-05)]_50 chrX:4760075-4760155 7.67e-01 80 chrI:3993706-3993786 3.95e-02 80 chrIV:13410379-13410459 3.51e-01 80 chrI:2258102-2258182 2.14e-02 1_[+3(1.36e-05)]_71 chrIII:13525652-13525732 2.74e-01 80 chrV:6485255-6485335 5.41e-02 22_[+5(5.49e-05)]_50 chrI:8783860-8783940 4.64e-01 80 chrIII:4451189-4451269 8.24e-03 80 chrII:10373699-10373779 2.08e-01 80 chrIII:5940162-5940242 4.24e-03 9_[+2(8.47e-05)]_18_[+4(2.54e-05)]_\ 1_[+4(5.29e-05)]_28 chrV:11947315-11947395 8.35e-01 80 chrIII:4273022-4273102 9.28e-01 80 chrX:4576481-4576561 2.00e-01 80 chrX:2043405-2043485 9.40e-02 80 chrII:11535624-11535704 7.03e-01 80 chrX:9510048-9510128 3.31e-01 80 chrII:10621146-10621226 4.47e-02 80 chrX:10990623-10990703 9.25e-01 80 chrIII:9451111-9451191 1.30e-01 38_[+5(5.49e-05)]_34 chrI:14962326-14962406 1.85e-01 80 chrX:15347868-15347948 8.42e-01 80 chrII:9488951-9489031 7.20e-03 14_[+1(3.18e-05)]_32_[+2(8.47e-05)]_\ 18 chrV:9395380-9395460 3.05e-01 80 chrII:6411924-6412004 6.98e-02 80 chrIII:13032616-13032696 7.35e-01 80 chrII:11567476-11567556 5.39e-01 80 chrX:1644328-1644408 9.95e-01 80 chrIII:4519553-4519633 2.42e-01 16_[+5(3.51e-05)]_56 chrX:6953464-6953544 1.27e-01 64_[+4(5.29e-05)]_8 chrIV:1896250-1896330 2.78e-02 16_[+2(2.82e-05)]_[+2(2.82e-05)]_48 chrI:13843259-13843339 5.71e-01 80 chrIV:2488044-2488124 2.40e-01 80 chrIII:6605585-6605665 9.35e-03 54_[+3(3.94e-05)]_18 chrI:788202-788282 4.20e-03 5_[+1(4.20e-05)]_67 chrII:2461495-2461575 6.90e-01 80 chrX:1603148-1603228 7.16e-02 39_[+4(2.54e-05)]_33 chrI:810736-810816 7.15e-02 49_[+4(2.54e-05)]_23 chrX:11033260-11033340 5.91e-01 80 chrV:20457497-20457577 7.27e-01 80 chrII:11890735-11890815 4.04e-01 80 chrIV:1895104-1895184 8.22e-01 80 chrV:6470260-6470340 4.22e-01 80 chrX:13504001-13504081 6.17e-02 9_[+2(2.82e-05)]_63 chrX:3310768-3310848 3.97e-01 80 chrX:9089690-9089770 8.66e-01 80 chrII:7809523-7809603 6.02e-02 80 chrI:3205910-3205990 2.05e-02 6_[+3(1.36e-05)]_28_[+3(1.36e-05)]_\ 30 chrIV:13028376-13028456 1.28e-01 80 chrV:3132237-3132317 5.92e-01 80 chrI:7195031-7195111 4.21e-01 80 chrI:7715660-7715740 6.56e-02 49_[+4(8.05e-05)]_23 chrIII:39685-39765 1.11e-01 54_[+4(2.54e-05)]_18 chrV:16699887-16699967 9.30e-01 80 chrIV:3860502-3860582 7.91e-03 80 chrII:13986225-13986305 9.95e-01 80 chrX:8401579-8401659 7.41e-02 80 chrII:5228810-5228890 1.16e-01 80 chrV:5846829-5846909 7.30e-02 80 chrX:14671680-14671760 1.15e-02 32_[+1(9.95e-06)]_40 chrX:3102958-3103038 4.65e-01 80 chrX:4881419-4881499 1.73e-02 80 chrIV:9123847-9123927 9.20e-02 80 chrII:3999665-3999745 1.98e-01 80 chrI:2709713-2709793 1.27e-02 31_[+1(2.07e-05)]_41 chrI:2746072-2746152 3.53e-01 80 chrIII:12341544-12341624 3.95e-02 40_[+3(1.36e-05)]_32 chrII:9574545-9574625 1.08e-01 63_[+4(5.29e-05)]_9 chrII:4580971-4581051 4.31e-01 80 chrX:9188212-9188292 9.24e-01 80 chrV:14832364-14832444 6.29e-02 15_[+5(5.49e-05)]_57 chrX:3977385-3977465 3.40e-01 80 chrX:5810523-5810603 3.45e-01 80 chrX:5764876-5764956 4.56e-02 32_[+1(7.58e-05)]_40 chrI:13417479-13417559 2.34e-01 17_[+4(5.29e-05)]_38_[+4(2.54e-05)]_\ 9 chrX:2920620-2920700 1.53e-01 80 chrX:4753082-4753162 4.26e-01 80 chrII:13790998-13791078 7.42e-01 80 chrI:687256-687336 2.53e-02 29_[+3(1.36e-05)]_43 chrX:3314039-3314119 4.06e-01 80 chrI:4703391-4703471 4.73e-01 80 chrV:1473979-1474059 8.04e-02 68_[+5(1.78e-05)]_4 chrIII:5668121-5668201 4.61e-01 80 chrX:5140354-5140434 7.61e-02 34_[+4(2.54e-05)]_[+4(2.54e-05)]_30 chrIV:12546019-12546099 3.33e-03 80 chrX:2700802-2700882 9.37e-01 80 chrI:11062088-11062168 4.82e-02 25_[+3(1.36e-05)]_26_[+3(1.36e-05)]_\ 13 chrII:5460937-5461017 8.89e-01 80 chrIV:5978290-5978370 3.52e-01 80 chrIII:13065912-13065992 4.98e-02 65_[+2(2.82e-05)]_7 chrIV:4756146-4756226 3.90e-01 80 chrX:14486592-14486672 2.16e-01 80 chrIV:1377773-1377853 2.90e-03 13_[+1(9.95e-06)]_59 chrIV:128636-128716 1.18e-01 80 chrII:6522802-6522882 8.83e-02 80 chrX:2552316-2552396 9.84e-01 80 chrI:1740976-1741056 5.17e-01 80 chrI:5422348-5422428 3.67e-03 7_[+2(2.82e-05)]_27_[+1(2.07e-05)]_\ 18_[+2(2.82e-05)]_4 chrII:7673994-7674074 9.30e-01 80 chrV:9088900-9088980 9.71e-01 80 chrX:10990827-10990907 1.14e-01 80 chrX:7218085-7218165 1.24e-01 80 chrV:4967403-4967483 9.12e-02 80 chrII:10990795-10990875 4.35e-01 80 chrIV:605481-605561 1.27e-01 80 chrII:10755572-10755652 5.62e-01 80 chrX:5518486-5518566 2.85e-02 42_[+1(9.95e-06)]_30 chrI:6285771-6285851 2.67e-01 80 chrIV:3854860-3854940 8.08e-01 80 chrV:18589674-18589754 1.99e-02 32_[+4(5.29e-05)]_40 chrIV:1920274-1920354 5.92e-01 80 chrI:3842475-3842555 3.58e-01 80 chrV:5850639-5850719 4.62e-02 80 chrII:4207578-4207658 7.99e-01 80 chrII:9491220-9491300 2.72e-01 80 chrIII:4514031-4514111 1.56e-01 58_[+2(2.82e-05)]_14 chrIII:4452890-4452970 1.07e-01 80 chrI:6746651-6746731 5.74e-01 80 chrX:15213490-15213570 2.79e-01 23_[+4(8.05e-05)]_49 chrI:7535466-7535546 8.50e-01 80 chrX:8600042-8600122 9.80e-01 80 chrI:11089386-11089466 2.83e-02 80 chrIII:9112730-9112810 6.78e-01 80 chrII:9304958-9305038 5.22e-02 80 chrIV:9772308-9772388 9.73e-01 80 chrX:7534666-7534746 7.12e-01 80 chrI:7712513-7712593 2.35e-01 80 chrII:11088285-11088365 7.44e-01 80 chrV:20410460-20410540 4.84e-03 40_[+1(6.38e-05)]_32 chrIII:1162116-1162196 5.91e-02 1_[+4(2.54e-05)]_57_[+4(2.54e-05)]_\ 6 chrX:9734516-9734596 4.78e-02 80 chrV:11959908-11959988 1.01e-01 80 chrV:978809-978889 5.15e-02 80 chrIV:3337464-3337544 2.38e-01 80 chrIII:13064770-13064850 2.46e-01 80 chrIV:9264004-9264084 5.89e-02 80 chrII:5418479-5418559 4.75e-01 80 chrV:14498382-14498462 2.90e-01 80 chrIV:6648833-6648913 8.98e-01 80 chrI:14626929-14627009 7.26e-03 58_[+2(2.82e-05)]_[+2(2.82e-05)]_6 chrX:2879795-2879875 6.33e-01 80 chrX:12692108-12692188 7.52e-02 17_[+4(8.05e-05)]_55 chrII:9266422-9266502 1.68e-01 80 chrIV:5536102-5536182 2.19e-01 80 chrX:7527913-7527993 7.71e-03 33_[+1(9.95e-06)]_[+1(9.95e-06)]_31 chrII:6441117-6441197 2.18e-01 80 chrIII:4005555-4005635 8.33e-01 80 chrX:4869825-4869905 1.23e-03 32_[+1(9.95e-06)]_40 chrX:8603190-8603270 3.16e-01 80 chrI:7714691-7714771 2.75e-01 80 chrIII:179308-179388 1.43e-01 80 chrII:3597208-3597288 2.93e-02 80 chrX:760621-760701 3.12e-02 30_[+4(2.54e-05)]_[+4(2.54e-05)]_34 chrII:2832685-2832765 2.53e-01 80 chrV:19630872-19630952 3.53e-01 80 chrX:6807601-6807681 5.35e-01 80 chrII:3501270-3501350 8.67e-01 80 chrIV:1908722-1908802 9.34e-01 80 chrV:11852500-11852580 3.53e-01 80 chrI:2552902-2552982 6.26e-02 6_[+4(5.29e-05)]_53_[+4(5.29e-05)]_\ 5 chrV:4964342-4964422 6.67e-01 80 chrX:1244423-1244503 7.72e-02 80 chrV:1233255-1233335 8.03e-01 80 chrV:4193296-4193376 2.19e-01 80 chrI:4312778-4312858 6.39e-01 80 chrII:11040009-11040089 1.52e-01 80 chrX:15278021-15278101 4.61e-02 29_[+1(9.95e-06)]_[+1(9.95e-06)]_35 chrI:1559214-1559294 8.35e-01 80 chrIII:434499-434579 2.52e-03 [+4(2.54e-05)]_49_[+2(2.82e-05)]_15 chrI:6289826-6289906 2.53e-01 80 chrIV:2250859-2250939 2.53e-02 21_[+3(1.36e-05)]_26_[+3(1.36e-05)]_\ 17 chrX:16150317-16150397 8.62e-01 80 chrII:6409239-6409319 6.79e-02 80 chrII:3959844-3959924 3.12e-02 37_[+2(2.82e-05)]_35 chrII:5877774-5877854 1.88e-02 80 chrIV:5527037-5527117 5.64e-01 80 chrX:4307629-4307709 5.89e-02 18_[+2(5.43e-05)]_54 chrI:13500354-13500434 5.17e-02 53_[+2(2.82e-05)]_19 chrX:8397342-8397422 4.27e-01 80 chrIV:3766490-3766570 1.98e-02 11_[+4(8.05e-05)]_61 chrX:3467463-3467543 5.04e-02 80 chrIII:4461583-4461663 3.95e-01 80 chrI:3338383-3338463 2.11e-01 80 chrI:4973189-4973269 6.73e-01 80 chrI:11098310-11098390 1.67e-01 80 chrX:2045034-2045114 7.48e-01 80 chrIII:9817401-9817481 5.33e-01 80 chrI:4224879-4224959 5.78e-01 80 chrV:14793323-14793403 1.90e-02 31_[+2(5.43e-05)]_41 chrIV:14032770-14032850 4.82e-01 80 chrI:6280435-6280515 2.92e-03 33_[+4(2.54e-05)]_39 chrX:5056377-5056457 9.91e-01 80 chrII:9263260-9263340 1.11e-01 31_[+1(7.58e-05)]_41 chrII:10989485-10989565 9.65e-01 80 chrI:14833928-14834008 8.67e-02 80 chrIII:12023333-12023413 4.87e-02 11_[+3(1.36e-05)]_61 chrIV:10817125-10817205 9.65e-01 80 chrX:8398381-8398461 9.09e-01 80 chrII:8748189-8748269 5.81e-01 80 chrV:11280247-11280327 1.10e-01 43_[+2(2.82e-05)]_29 chrX:5124489-5124569 7.20e-02 80 chrI:5077797-5077877 8.39e-02 80 chrII:4130239-4130319 9.35e-01 80 chrIII:2983173-2983253 9.73e-04 54_[+1(6.38e-05)]_18 chrIII:11856111-11856191 2.79e-03 68_[+3(1.36e-05)]_4 chrI:3100670-3100750 2.52e-02 37_[+3(1.36e-05)]_35 chrV:11341411-11341491 1.08e-01 80 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n12.farnam.hpc.yale.internal ********************************************************************************