******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/worm/fasta/RankLinear2.0_40/mes-4.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrV:13433674-13433754 1.0000 80 chrIII:4172423-4172503 1.0000 80 chrX:13293210-13293290 1.0000 80 chrIII:2030965-2031045 1.0000 80 chrV:19521417-19521497 1.0000 80 chrIV:16657729-16657809 1.0000 80 chrV:13415558-13415638 1.0000 80 chrX:9090711-9090791 1.0000 80 chrX:487790-487870 1.0000 80 chrI:2069109-2069189 1.0000 80 chrX:13443429-13443509 1.0000 80 chrIII:13411358-13411438 1.0000 80 chrIV:6117854-6117934 1.0000 80 chrIII:4449496-4449576 1.0000 80 chrX:9237897-9237977 1.0000 80 chrV:15480007-15480087 1.0000 80 chrI:109649-109729 1.0000 80 chrM:11675-11755 1.0000 80 chrV:15454500-15454580 1.0000 80 chrIII:9617057-9617137 1.0000 80 chrIV:11377548-11377628 1.0000 80 chrX:9238842-9238922 1.0000 80 chrX:16894185-16894265 1.0000 80 chrIV:11323753-11323833 1.0000 80 chrIV:7558869-7558949 1.0000 80 chrIV:12570566-12570646 1.0000 80 chrX:422347-422427 1.0000 80 chrM:3312-3392 1.0000 80 chrIII:11091170-11091250 1.0000 80 chrX:16042581-16042661 1.0000 80 chrX:14679171-14679251 1.0000 80 chrIV:16503775-16503855 1.0000 80 chrX:8640782-8640862 1.0000 80 chrX:8152733-8152813 1.0000 80 chrIII:698974-699054 1.0000 80 chrX:10667632-10667712 1.0000 80 chrI:14759198-14759278 1.0000 80 chrX:7378778-7378858 1.0000 80 chrV:3686096-3686176 1.0000 80 chrIV:2808368-2808448 1.0000 80 chrII:7003111-7003191 1.0000 80 chrII:8187797-8187877 1.0000 80 chrX:14162101-14162181 1.0000 80 chrIV:17089094-17089174 1.0000 80 chrIV:4710490-4710570 1.0000 80 chrIV:7083428-7083508 1.0000 80 chrIV:3296868-3296948 1.0000 80 chrIV:16775110-16775190 1.0000 80 chrI:5775157-5775237 1.0000 80 chrV:15767579-15767659 1.0000 80 chrII:13521345-13521425 1.0000 80 chrM:11384-11464 1.0000 80 chrX:5709304-5709384 1.0000 80 chrIV:7487686-7487766 1.0000 80 chrX:10732017-10732097 1.0000 80 chrX:9024388-9024468 1.0000 80 chrII:8441656-8441736 1.0000 80 chrIII:2811428-2811508 1.0000 80 chrM:3606-3686 1.0000 80 chrM:10155-10235 1.0000 80 chrI:13953298-13953378 1.0000 80 chrX:4410701-4410781 1.0000 80 chrX:11163349-11163429 1.0000 80 chrII:4703229-4703309 1.0000 80 chrX:8381790-8381870 1.0000 80 chrIII:12499476-12499556 1.0000 80 chrX:9025719-9025799 1.0000 80 chrI:946150-946230 1.0000 80 chrII:12542807-12542887 1.0000 80 chrX:3793546-3793626 1.0000 80 chrI:378890-378970 1.0000 80 chrII:2921283-2921363 1.0000 80 chrII:6898118-6898198 1.0000 80 chrV:5667490-5667570 1.0000 80 chrX:13283663-13283743 1.0000 80 chrV:14999761-14999841 1.0000 80 chrV:8247560-8247640 1.0000 80 chrIII:8639331-8639411 1.0000 80 chrII:6491322-6491402 1.0000 80 chrM:8173-8253 1.0000 80 chrIV:4930992-4931072 1.0000 80 chrV:14419212-14419292 1.0000 80 chrV:3163327-3163407 1.0000 80 chrM:11093-11173 1.0000 80 chrX:12942472-12942552 1.0000 80 chrI:3910169-3910249 1.0000 80 chrIV:386917-386997 1.0000 80 chrII:5353839-5353919 1.0000 80 chrX:5713658-5713738 1.0000 80 chrIII:9051915-9051995 1.0000 80 chrI:9512381-9512461 1.0000 80 chrIV:7961955-7962035 1.0000 80 chrII:11651093-11651173 1.0000 80 chrX:8955832-8955912 1.0000 80 chrX:13038909-13038989 1.0000 80 chrV:8499584-8499664 1.0000 80 chrIV:13239527-13239607 1.0000 80 chrIV:15476530-15476610 1.0000 80 chrIII:12977661-12977741 1.0000 80 chrII:14617090-14617170 1.0000 80 chrIII:4489103-4489183 1.0000 80 chrIV:15693415-15693495 1.0000 80 chrII:4229272-4229352 1.0000 80 chrV:8230283-8230363 1.0000 80 chrII:9056582-9056662 1.0000 80 chrIV:7499485-7499565 1.0000 80 chrIV:7962184-7962264 1.0000 80 chrX:16285317-16285397 1.0000 80 chrM:7291-7371 1.0000 80 chrIII:1806340-1806420 1.0000 80 chrIV:15931962-15932042 1.0000 80 chrX:14478894-14478974 1.0000 80 chrX:8945099-8945179 1.0000 80 chrX:10078159-10078239 1.0000 80 chrX:8939472-8939552 1.0000 80 chrX:7794652-7794732 1.0000 80 chrIII:1600821-1600901 1.0000 80 chrIV:4450087-4450167 1.0000 80 chrX:16271316-16271396 1.0000 80 chrI:11803372-11803452 1.0000 80 chrV:10238072-10238152 1.0000 80 chrX:2528074-2528154 1.0000 80 chrI:1157522-1157602 1.0000 80 chrM:7090-7170 1.0000 80 chrIV:7043680-7043760 1.0000 80 chrM:1012-1092 1.0000 80 chrI:12229387-12229467 1.0000 80 chrM:6037-6117 1.0000 80 chrI:9327509-9327589 1.0000 80 chrV:5592047-5592127 1.0000 80 chrX:7906568-7906648 1.0000 80 chrIV:14790611-14790691 1.0000 80 chrX:10148553-10148633 1.0000 80 chrM:9087-9167 1.0000 80 chrIV:12417949-12418029 1.0000 80 chrX:15200862-15200942 1.0000 80 chrI:10187376-10187456 1.0000 80 chrIII:7338715-7338795 1.0000 80 chrX:6867879-6867959 1.0000 80 chrX:16503204-16503284 1.0000 80 chrIV:991325-991405 1.0000 80 chrX:15619484-15619564 1.0000 80 chrIII:3249186-3249266 1.0000 80 chrIV:1711196-1711276 1.0000 80 chrX:9078299-9078379 1.0000 80 chrX:7681092-7681172 1.0000 80 chrII:11167207-11167287 1.0000 80 chrII:11917887-11917967 1.0000 80 chrX:9373069-9373149 1.0000 80 chrII:12541809-12541889 1.0000 80 chrI:379094-379174 1.0000 80 chrX:10124523-10124603 1.0000 80 chrV:11175700-11175780 1.0000 80 chrX:11645754-11645834 1.0000 80 chrM:4669-4749 1.0000 80 chrM:4874-4954 1.0000 80 chrM:1213-1293 1.0000 80 chrM:2205-2285 1.0000 80 chrIII:3869580-3869660 1.0000 80 chrIV:4347755-4347835 1.0000 80 chrV:12510130-12510210 1.0000 80 chrIII:5914882-5914962 1.0000 80 chrM:6238-6318 1.0000 80 chrIV:5541382-5541462 1.0000 80 chrM:12624-12704 1.0000 80 chrV:6559724-6559804 1.0000 80 chrV:13669373-13669453 1.0000 80 chrX:7773875-7773955 1.0000 80 chrIII:9060466-9060546 1.0000 80 chrII:3567729-3567809 1.0000 80 chrII:9211776-9211856 1.0000 80 chrM:12413-12493 1.0000 80 chrX:8646453-8646533 1.0000 80 chrX:4444933-4445013 1.0000 80 chrM:9291-9371 1.0000 80 chrX:16619329-16619409 1.0000 80 chrV:7858061-7858141 1.0000 80 chrIV:322651-322731 1.0000 80 chrIV:14327121-14327201 1.0000 80 chrV:6551902-6551982 1.0000 80 chrX:16298345-16298425 1.0000 80 chrX:2531430-2531510 1.0000 80 chrI:10516909-10516989 1.0000 80 chrI:4645401-4645481 1.0000 80 chrIII:6373911-6373991 1.0000 80 chrIV:2665768-2665848 1.0000 80 chrII:5577233-5577313 1.0000 80 chrIV:14225040-14225120 1.0000 80 chrV:6335367-6335447 1.0000 80 chrX:13781549-13781629 1.0000 80 chrIII:10746417-10746497 1.0000 80 chrX:11933682-11933762 1.0000 80 chrIV:13701627-13701707 1.0000 80 chrV:9318155-9318235 1.0000 80 chrIV:16400920-16401000 1.0000 80 chrV:19521622-19521702 1.0000 80 chrI:852187-852267 1.0000 80 chrIV:16398351-16398431 1.0000 80 chrII:4942540-4942620 1.0000 80 chrI:8530118-8530198 1.0000 80 chrX:14228880-14228960 1.0000 80 chrIV:2805758-2805838 1.0000 80 chrIII:11090285-11090365 1.0000 80 chrIV:8377646-8377726 1.0000 80 chrIV:4880793-4880873 1.0000 80 chrII:6587539-6587619 1.0000 80 chrIV:991533-991613 1.0000 80 chrV:15547940-15548020 1.0000 80 chrX:11252621-11252701 1.0000 80 chrIV:15931303-15931383 1.0000 80 chrX:9091587-9091667 1.0000 80 chrIV:2657482-2657562 1.0000 80 chrIII:931564-931644 1.0000 80 chrI:6847209-6847289 1.0000 80 chrII:8547092-8547172 1.0000 80 chrX:6286363-6286443 1.0000 80 chrX:10963796-10963876 1.0000 80 chrV:14468681-14468761 1.0000 80 chrX:5407400-5407480 1.0000 80 chrX:5319355-5319435 1.0000 80 chrIV:7506228-7506308 1.0000 80 chrI:12065852-12065932 1.0000 80 chrX:15297579-15297659 1.0000 80 chrIV:6481183-6481263 1.0000 80 chrIII:4491409-4491489 1.0000 80 chrII:14018433-14018513 1.0000 80 chrI:933474-933554 1.0000 80 chrIV:11026050-11026130 1.0000 80 chrIV:8428574-8428654 1.0000 80 chrI:2410108-2410188 1.0000 80 chrX:8971611-8971691 1.0000 80 chrI:6164191-6164271 1.0000 80 chrII:6248651-6248731 1.0000 80 chrIV:9477718-9477798 1.0000 80 chrIV:3336797-3336877 1.0000 80 chrX:5707995-5708075 1.0000 80 chrX:6220053-6220133 1.0000 80 chrV:12491227-12491307 1.0000 80 chrIV:8891131-8891211 1.0000 80 chrX:16604763-16604843 1.0000 80 chrIII:13464688-13464768 1.0000 80 chrIV:4468068-4468148 1.0000 80 chrX:8650640-8650720 1.0000 80 chrIV:14013819-14013899 1.0000 80 chrIV:867052-867132 1.0000 80 chrI:11584754-11584834 1.0000 80 chrX:6903150-6903230 1.0000 80 chrX:16378071-16378151 1.0000 80 chrV:11980287-11980367 1.0000 80 chrII:5782004-5782084 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/worm/inference_raw/MEME/RankLinear2.0_40_mes-4/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/worm/fasta/RankLinear2.0_40/mes-4.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.283 C 0.212 G 0.218 T 0.287 Background letter frequencies (from file dataset with add-one prior applied): A 0.283 C 0.212 G 0.218 T 0.287 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GGTTCGAW MEME-1 width = 8 sites = 42 llr = 357 E-value = 4.1e-012 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGTTCGAW MEME-1 Description -------------------------------------------------------------------------------- Simplified A :11::1a5 pos.-specific C ::1:a::1 probability G a9:::9:: matrix T ::8a:::4 bits 2.2 * * 2.0 * * 1.8 * ** * 1.6 ** **** Relative 1.3 ** **** Entropy 1.1 ** **** (12.3 bits) 0.9 ** **** 0.7 ******* 0.4 ******* 0.2 ******** 0.0 -------- Multilevel GGTTCGAA consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTTCGAW MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:8971611-8971691 49 1.45e-05 TGCCCGCGTA GGTTCGAA TCCTGCTGAC chrIV:6481183-6481263 29 1.45e-05 GAAGGTCGCC GGTTCGAA CCCGGCCAGG chrX:12942472-12942552 46 1.45e-05 CGGGGGCGTG GGTTCGAA TCCCACTCTC chrIII:8639331-8639411 73 1.45e-05 TGGGTGCGTG GGTTCGAA chrX:16042581-16042661 39 1.45e-05 CTGCGAGCAG GGTTCGAA CCTACGCGGG chrI:2410108-2410188 67 2.92e-05 GTAGCGCGCT GGTTCGAT CCCCAC chrX:6286363-6286443 8 2.92e-05 AGTCTGG GGTTCGAT TCCCCATACC chrIV:16400920-16401000 26 2.92e-05 TGGCGACGCT GGTTCGAT TCCAGCCGCA chrX:16298345-16298425 47 2.92e-05 GAAGGTCGGC GGTTCGAT CCCGCCCGAG chrX:7906568-7906648 67 2.92e-05 ATAAGGCCGG GGTTCGAT TCCCCG chrX:2528074-2528154 18 2.92e-05 GAAGGTCGCT GGTTCGAT TCCAGCATGA chrX:7794652-7794732 1 2.92e-05 . GGTTCGAT TCCCCCCGAA chrX:4410701-4410781 1 2.92e-05 . GGTTCGAT TCCCCGCAAC chrX:10667632-10667712 11 2.92e-05 ACGCGGCCCG GGTTCGAT TCCCGGCATG chrX:13293210-13293290 32 2.92e-05 GAAGGTCGCT GGTTCGAT TCCAGCATGA chrII:6248651-6248731 48 4.00e-05 ACACAATGTA GGTTCGAC CCCCGCTTTA chrI:6164191-6164271 52 4.00e-05 CAAGGTCGCA GGTTCGAC CCCTGCTGGC chrV:19521622-19521702 36 4.00e-05 GAAGGTCACA GGTTCGAC CCCCGTTGAG chrX:14679171-14679251 41 4.00e-05 CAAGGTCGCA GGTTCGAC CCCTGCTGGC chrX:5407400-5407480 25 5.07e-05 CTCCCGGTGA GGCTCGAA CTCACGACCT chrII:3567729-3567809 47 5.07e-05 CCCAATGCGG GGCTCGAA CCCGCGACAA chrIV:11323753-11323833 16 5.07e-05 TTGCATTCAG GGCTCGAA TTTCAAGCAG chrX:6220053-6220133 29 1.06e-04 ACCACGGCAG GATTCGAA CCTACAATCT chrI:12065852-12065932 64 1.06e-04 GAAGGTCGGT GGTTCGAG CCCGCCCGA chrX:5319355-5319435 42 1.06e-04 CCCCAAACCA GGATCGAA CTGGTGACCT chrX:14228880-14228960 52 1.06e-04 ACCACTGAGC GGATCGAA CGCCCAATCT chrII:9211776-9211856 40 1.06e-04 CGTCGAGCCG GATTCGAA CCAGCGACCT chrX:8945099-8945179 73 1.06e-04 ACCACTGAGC GGATCGAA chrX:13038909-13038989 63 1.06e-04 CCGTCCGCAG GATTCGAA CCTGCGCCCT chrX:5713658-5713738 45 1.06e-04 TAAGGTCAGG GGTTCGAG TCCCCTAGGT chrX:3793546-3793626 30 1.06e-04 GTCCTGGCCG GGATCGAA CCGGCGATCT chrX:11163349-11163429 21 1.06e-04 AAGAGAGTGG GATTCGAA CCCACGCCCC chrX:8640782-8640862 24 1.06e-04 ACCACGGCAG GATTCGAA CCTACAATCT chrIV:7558869-7558949 33 1.06e-04 GAAGAGGGAC GGCTCGAT ATACCTTTAA chrIII:4449496-4449576 49 1.06e-04 ACCACGGCAG GATTCGAA CCTGCAATCT chrX:10124523-10124603 35 1.25e-04 TGCCCGCGTA GGTTCAAA TCCTGCTCGC chrX:15619484-15619564 1 1.88e-04 . GGTTCAAT ATCGCTCTCC chrX:6867879-6867959 46 1.88e-04 GGCACCCACT GGTTCAAT TCCCTGTGTA chrIII:1600821-1600901 12 1.88e-04 AGAGCGCCAT GGGTCGAA CCACTGACCT chrX:8381790-8381870 17 1.88e-04 ACCCAGGCAG GGGTCGAA CCTGCAATCT chrIV:2808368-2808448 37 1.88e-04 gcgagacccg ggttcaat tcccggccgg chrX:9238842-9238922 72 1.88e-04 AGAGGGCTGG GGTTCAAT T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTTCGAW MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:8971611-8971691 1.4e-05 48_[+1]_24 chrIV:6481183-6481263 1.4e-05 28_[+1]_44 chrX:12942472-12942552 1.4e-05 45_[+1]_27 chrIII:8639331-8639411 1.4e-05 72_[+1] chrX:16042581-16042661 1.4e-05 38_[+1]_34 chrI:2410108-2410188 2.9e-05 66_[+1]_6 chrX:6286363-6286443 2.9e-05 7_[+1]_65 chrIV:16400920-16401000 2.9e-05 25_[+1]_47 chrX:16298345-16298425 2.9e-05 46_[+1]_26 chrX:7906568-7906648 2.9e-05 66_[+1]_6 chrX:2528074-2528154 2.9e-05 17_[+1]_55 chrX:7794652-7794732 2.9e-05 [+1]_72 chrX:4410701-4410781 2.9e-05 [+1]_72 chrX:10667632-10667712 2.9e-05 10_[+1]_62 chrX:13293210-13293290 2.9e-05 31_[+1]_41 chrII:6248651-6248731 4e-05 47_[+1]_25 chrI:6164191-6164271 4e-05 51_[+1]_21 chrV:19521622-19521702 4e-05 35_[+1]_37 chrX:14679171-14679251 4e-05 40_[+1]_32 chrX:5407400-5407480 5.1e-05 24_[+1]_48 chrII:3567729-3567809 5.1e-05 46_[+1]_26 chrIV:11323753-11323833 5.1e-05 15_[+1]_57 chrX:6220053-6220133 0.00011 28_[+1]_44 chrI:12065852-12065932 0.00011 63_[+1]_9 chrX:5319355-5319435 0.00011 41_[+1]_31 chrX:14228880-14228960 0.00011 51_[+1]_21 chrII:9211776-9211856 0.00011 39_[+1]_33 chrX:8945099-8945179 0.00011 72_[+1] chrX:13038909-13038989 0.00011 62_[+1]_10 chrX:5713658-5713738 0.00011 44_[+1]_28 chrX:3793546-3793626 0.00011 29_[+1]_43 chrX:11163349-11163429 0.00011 20_[+1]_52 chrX:8640782-8640862 0.00011 23_[+1]_49 chrIV:7558869-7558949 0.00011 32_[+1]_40 chrIII:4449496-4449576 0.00011 48_[+1]_24 chrX:10124523-10124603 0.00012 34_[+1]_38 chrX:15619484-15619564 0.00019 [+1]_72 chrX:6867879-6867959 0.00019 45_[+1]_27 chrIII:1600821-1600901 0.00019 11_[+1]_61 chrX:8381790-8381870 0.00019 16_[+1]_56 chrIV:2808368-2808448 0.00019 36_[+1]_36 chrX:9238842-9238922 0.00019 71_[+1]_1 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTTCGAW MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGTTCGAW width=8 seqs=42 chrX:8971611-8971691 ( 49) GGTTCGAA 1 chrIV:6481183-6481263 ( 29) GGTTCGAA 1 chrX:12942472-12942552 ( 46) GGTTCGAA 1 chrIII:8639331-8639411 ( 73) GGTTCGAA 1 chrX:16042581-16042661 ( 39) GGTTCGAA 1 chrI:2410108-2410188 ( 67) GGTTCGAT 1 chrX:6286363-6286443 ( 8) GGTTCGAT 1 chrIV:16400920-16401000 ( 26) GGTTCGAT 1 chrX:16298345-16298425 ( 47) GGTTCGAT 1 chrX:7906568-7906648 ( 67) GGTTCGAT 1 chrX:2528074-2528154 ( 18) GGTTCGAT 1 chrX:7794652-7794732 ( 1) GGTTCGAT 1 chrX:4410701-4410781 ( 1) GGTTCGAT 1 chrX:10667632-10667712 ( 11) GGTTCGAT 1 chrX:13293210-13293290 ( 32) GGTTCGAT 1 chrII:6248651-6248731 ( 48) GGTTCGAC 1 chrI:6164191-6164271 ( 52) GGTTCGAC 1 chrV:19521622-19521702 ( 36) GGTTCGAC 1 chrX:14679171-14679251 ( 41) GGTTCGAC 1 chrX:5407400-5407480 ( 25) GGCTCGAA 1 chrII:3567729-3567809 ( 47) GGCTCGAA 1 chrIV:11323753-11323833 ( 16) GGCTCGAA 1 chrX:6220053-6220133 ( 29) GATTCGAA 1 chrI:12065852-12065932 ( 64) GGTTCGAG 1 chrX:5319355-5319435 ( 42) GGATCGAA 1 chrX:14228880-14228960 ( 52) GGATCGAA 1 chrII:9211776-9211856 ( 40) GATTCGAA 1 chrX:8945099-8945179 ( 73) GGATCGAA 1 chrX:13038909-13038989 ( 63) GATTCGAA 1 chrX:5713658-5713738 ( 45) GGTTCGAG 1 chrX:3793546-3793626 ( 30) GGATCGAA 1 chrX:11163349-11163429 ( 21) GATTCGAA 1 chrX:8640782-8640862 ( 24) GATTCGAA 1 chrIV:7558869-7558949 ( 33) GGCTCGAT 1 chrIII:4449496-4449576 ( 49) GATTCGAA 1 chrX:10124523-10124603 ( 35) GGTTCAAA 1 chrX:15619484-15619564 ( 1) GGTTCAAT 1 chrX:6867879-6867959 ( 46) GGTTCAAT 1 chrIII:1600821-1600901 ( 12) GGGTCGAA 1 chrX:8381790-8381870 ( 17) GGGTCGAA 1 chrIV:2808368-2808448 ( 37) GGTTCAAT 1 chrX:9238842-9238922 ( 72) GGTTCAAT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTTCGAW MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.74794 E= 4.1e-012 -1204 -1204 220 -1204 -99 -1204 197 -1204 -157 -115 -219 141 -1204 -1204 -1204 180 -1204 224 -1204 -1204 -125 -1204 201 -1204 182 -1204 -1204 -1204 82 -115 -219 32 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTTCGAW MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 42 E= 4.1e-012 0.000000 0.000000 1.000000 0.000000 0.142857 0.000000 0.857143 0.000000 0.095238 0.095238 0.047619 0.761905 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.119048 0.000000 0.880952 0.000000 1.000000 0.000000 0.000000 0.000000 0.500000 0.095238 0.047619 0.357143 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTTCGAW MEME-1 regular expression -------------------------------------------------------------------------------- GGTTCGA[AT] -------------------------------------------------------------------------------- Time 5.51 secs. ******************************************************************************** ******************************************************************************** MOTIF CAGACGCG MEME-2 width = 8 sites = 19 llr = 185 E-value = 5.1e-004 ******************************************************************************** -------------------------------------------------------------------------------- Motif CAGACGCG MEME-2 Description -------------------------------------------------------------------------------- Simplified A 1919:::: pos.-specific C 9:::9:71 probability G ::911a19 matrix T :1::::2: bits 2.2 * 2.0 * ** 1.8 * * ** * 1.6 ****** * Relative 1.3 ****** * Entropy 1.1 ******** (14.0 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CAGACGCG consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGACGCG MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:6220053-6220133 60 7.91e-06 GCTCCGTAGG CAGACGCG TTATCCATTG chrX:11252621-11252701 12 7.91e-06 GCTCCGTAGG CAGACGCG TTATCCATTG chrIV:322651-322731 19 7.91e-06 tcgcatgtga cagacgcg gatactcacc chrX:16619329-16619409 42 7.91e-06 tcgcatgtga cagacgcg gatactcacc chrIV:12417949-12418029 20 7.91e-06 GCTCCGTAGG CAGACGCG TTATCCATTG chrIII:1600821-1600901 43 7.91e-06 GAGCCAAAAG CAGACGCG TTAGCCAGTC chrX:10732017-10732097 15 7.91e-06 GCTCCGTAGG CAGACGCG TTATCCATTG chrX:8640782-8640862 55 7.91e-06 GCTCCGTAGG CAGACGCG TTATCCATTG chrII:14018433-14018513 1 1.86e-05 . CAGACGTG ATTAAAGAAA chrII:5577233-5577313 10 1.86e-05 CGTGTAAAG CAGACGTG ATAACCACTA chrX:15619484-15619564 28 1.86e-05 CAGCTCCATG CAGACGTG AAAAAGTCGG chrX:3793546-3793626 61 1.86e-05 GCGTGTAAAG CAGACGTG ATAACCACTA chrIII:1806340-1806420 12 2.47e-05 GGAGGCCTTG CAGGCGCG GTGGCGAGCG chrIV:867052-867132 45 3.28e-05 CGGTTTTCCT CAGACGGG TAAACGGCAA chrX:5407400-5407480 56 4.85e-05 GATTATGAGA CTGACGCG CTGCCTACTG chrX:8381790-8381870 48 4.85e-05 GATTAGAAGT CAGACGCC TTATCCATTA chrI:9512381-9512461 68 5.67e-05 CGGGAATTTT CAGAGGCG GAGTT chrII:4942540-4942620 14 6.69e-05 GAACAACGGG CAAACGCG TTACCACTGC chrIII:10746417-10746497 61 7.75e-05 GATTCTTTTC AAGACGCG TCTCCCACAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGACGCG MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:6220053-6220133 7.9e-06 59_[+2]_13 chrX:11252621-11252701 7.9e-06 11_[+2]_61 chrIV:322651-322731 7.9e-06 18_[+2]_54 chrX:16619329-16619409 7.9e-06 41_[+2]_31 chrIV:12417949-12418029 7.9e-06 19_[+2]_53 chrIII:1600821-1600901 7.9e-06 42_[+2]_30 chrX:10732017-10732097 7.9e-06 14_[+2]_58 chrX:8640782-8640862 7.9e-06 54_[+2]_18 chrII:14018433-14018513 1.9e-05 [+2]_72 chrII:5577233-5577313 1.9e-05 9_[+2]_63 chrX:15619484-15619564 1.9e-05 27_[+2]_45 chrX:3793546-3793626 1.9e-05 60_[+2]_12 chrIII:1806340-1806420 2.5e-05 11_[+2]_61 chrIV:867052-867132 3.3e-05 44_[+2]_28 chrX:5407400-5407480 4.9e-05 55_[+2]_17 chrX:8381790-8381870 4.9e-05 47_[+2]_25 chrI:9512381-9512461 5.7e-05 67_[+2]_5 chrII:4942540-4942620 6.7e-05 13_[+2]_59 chrIII:10746417-10746497 7.7e-05 60_[+2]_12 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGACGCG MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CAGACGCG width=8 seqs=19 chrX:6220053-6220133 ( 60) CAGACGCG 1 chrX:11252621-11252701 ( 12) CAGACGCG 1 chrIV:322651-322731 ( 19) CAGACGCG 1 chrX:16619329-16619409 ( 42) CAGACGCG 1 chrIV:12417949-12418029 ( 20) CAGACGCG 1 chrIII:1600821-1600901 ( 43) CAGACGCG 1 chrX:10732017-10732097 ( 15) CAGACGCG 1 chrX:8640782-8640862 ( 55) CAGACGCG 1 chrII:14018433-14018513 ( 1) CAGACGTG 1 chrII:5577233-5577313 ( 10) CAGACGTG 1 chrX:15619484-15619564 ( 28) CAGACGTG 1 chrX:3793546-3793626 ( 61) CAGACGTG 1 chrIII:1806340-1806420 ( 12) CAGGCGCG 1 chrIV:867052-867132 ( 45) CAGACGGG 1 chrX:5407400-5407480 ( 56) CTGACGCG 1 chrX:8381790-8381870 ( 48) CAGACGCC 1 chrI:9512381-9512461 ( 68) CAGAGGCG 1 chrII:4942540-4942620 ( 14) CAAACGCG 1 chrIII:10746417-10746497 ( 61) AAGACGCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGACGCG MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.8043 E= 5.1e-004 -243 216 -1089 -1089 174 -1089 -1089 -244 -243 -1089 212 -1089 174 -1089 -205 -1089 -1089 216 -205 -1089 -1089 -1089 220 -1089 -1089 180 -205 -45 -1089 -201 212 -1089 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGACGCG MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 19 E= 5.1e-004 0.052632 0.947368 0.000000 0.000000 0.947368 0.000000 0.000000 0.052632 0.052632 0.000000 0.947368 0.000000 0.947368 0.000000 0.052632 0.000000 0.000000 0.947368 0.052632 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.736842 0.052632 0.210526 0.000000 0.052632 0.947368 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGACGCG MEME-2 regular expression -------------------------------------------------------------------------------- CAGACG[CT]G -------------------------------------------------------------------------------- Time 10.36 secs. ******************************************************************************** ******************************************************************************** MOTIF TAGCTCAG MEME-3 width = 8 sites = 10 llr = 112 E-value = 1.8e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif TAGCTCAG MEME-3 Description -------------------------------------------------------------------------------- Simplified A :a::::a: pos.-specific C :::a:a:: probability G ::a::::a matrix T a:::a::: bits 2.2 ** * * 2.0 ** * * 1.8 ******** 1.6 ******** Relative 1.3 ******** Entropy 1.1 ******** (16.1 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TAGCTCAG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAGCTCAG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrI:11584754-11584834 40 1.41e-05 GCCGCCCGGT TAGCTCAG TCGGTAGAGC chrI:6164191-6164271 7 1.41e-05 CCGCCA TAGCTCAG TCGGTTAGAG chrIV:16398351-16398431 40 1.41e-05 TGCGGGGGTA TAGCTCAG TGGTAGAGCG chrV:9318155-9318235 54 1.41e-05 CGTGGGGGTA TAGCTCAG GGGTAGAGCG chrX:11933682-11933762 53 1.41e-05 TGGGCCCGTA TAGCTCAG AGGCAGAGCG chrV:6335367-6335447 38 1.41e-05 TCGTGGGGTA TAGCTCAG TGGCAGAGCA chrV:6559724-6559804 40 1.41e-05 CATGGGGGTA TAGCTCAG TGGCAGAGCA chrX:5713658-5713738 1 1.41e-05 . TAGCTCAG TTGGTAGAGC chrX:9238842-9238922 29 1.41e-05 AGCGGGGGTA TAGCTCAG TGGTAGAGCG chrX:487790-487870 32 1.41e-05 GACGCCCTTA TAGCTCAG TGGTAGAGCG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAGCTCAG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:11584754-11584834 1.4e-05 39_[+3]_33 chrI:6164191-6164271 1.4e-05 6_[+3]_66 chrIV:16398351-16398431 1.4e-05 39_[+3]_33 chrV:9318155-9318235 1.4e-05 53_[+3]_19 chrX:11933682-11933762 1.4e-05 52_[+3]_20 chrV:6335367-6335447 1.4e-05 37_[+3]_35 chrV:6559724-6559804 1.4e-05 39_[+3]_33 chrX:5713658-5713738 1.4e-05 [+3]_72 chrX:9238842-9238922 1.4e-05 28_[+3]_44 chrX:487790-487870 1.4e-05 31_[+3]_41 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAGCTCAG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TAGCTCAG width=8 seqs=10 chrI:11584754-11584834 ( 40) TAGCTCAG 1 chrI:6164191-6164271 ( 7) TAGCTCAG 1 chrIV:16398351-16398431 ( 40) TAGCTCAG 1 chrV:9318155-9318235 ( 54) TAGCTCAG 1 chrX:11933682-11933762 ( 53) TAGCTCAG 1 chrV:6335367-6335447 ( 38) TAGCTCAG 1 chrV:6559724-6559804 ( 40) TAGCTCAG 1 chrX:5713658-5713738 ( 1) TAGCTCAG 1 chrX:9238842-9238922 ( 29) TAGCTCAG 1 chrX:487790-487870 ( 32) TAGCTCAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAGCTCAG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.2669 E= 1.8e-001 -997 -997 -997 180 182 -997 -997 -997 -997 -997 220 -997 -997 224 -997 -997 -997 -997 -997 180 -997 224 -997 -997 182 -997 -997 -997 -997 -997 220 -997 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAGCTCAG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 10 E= 1.8e-001 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAGCTCAG MEME-3 regular expression -------------------------------------------------------------------------------- TAGCTCAG -------------------------------------------------------------------------------- Time 14.02 secs. ******************************************************************************** ******************************************************************************** MOTIF CGCCACGC MEME-4 width = 8 sites = 9 llr = 101 E-value = 8.5e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif CGCCACGC MEME-4 Description -------------------------------------------------------------------------------- Simplified A ::::a::: pos.-specific C a2aa:a1a probability G :8::::9: matrix T :::::::: bits 2.2 * ** * * 2.0 * ** * * 1.8 * ****** 1.6 * ****** Relative 1.3 ******** Entropy 1.1 ******** (16.2 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CGCCACGC consensus C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCCACGC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:11252621-11252701 30 5.76e-06 TTATCCATTG CGCCACGC GGCCACACAG chrI:852187-852267 46 5.76e-06 TAGACTACTG CGCCACGC GTGCGAACTG chrIV:12417949-12418029 38 5.76e-06 TTATCCATTG CGCCACGC GGCCATGTTT chrIV:15476530-15476610 36 5.76e-06 TAACCGACTG CGCCACGC ATGCATGTCC chrX:10732017-10732097 33 5.76e-06 TTATCCATTG CGCCACGC GGCCGCACAG chrX:8640782-8640862 73 5.76e-06 TTATCCATTG CGCCACGC chrX:9024388-9024468 28 1.14e-05 GACAAATTGC CCCCACGC AGGATTGAAC chrIII:13411358-13411438 11 1.14e-05 AACTTGTTGC CCCCACGC AGGATTGAAC chrII:4942540-4942620 31 1.70e-05 GTTACCACTG CGCCACCC GTGCATCATT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCCACGC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:11252621-11252701 5.8e-06 29_[+4]_43 chrI:852187-852267 5.8e-06 45_[+4]_27 chrIV:12417949-12418029 5.8e-06 37_[+4]_35 chrIV:15476530-15476610 5.8e-06 35_[+4]_37 chrX:10732017-10732097 5.8e-06 32_[+4]_40 chrX:8640782-8640862 5.8e-06 72_[+4] chrX:9024388-9024468 1.1e-05 27_[+4]_45 chrIII:13411358-13411438 1.1e-05 10_[+4]_62 chrII:4942540-4942620 1.7e-05 30_[+4]_42 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCCACGC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CGCCACGC width=8 seqs=9 chrX:11252621-11252701 ( 30) CGCCACGC 1 chrI:852187-852267 ( 46) CGCCACGC 1 chrIV:12417949-12418029 ( 38) CGCCACGC 1 chrIV:15476530-15476610 ( 36) CGCCACGC 1 chrX:10732017-10732097 ( 33) CGCCACGC 1 chrX:8640782-8640862 ( 73) CGCCACGC 1 chrX:9024388-9024468 ( 28) CCCCACGC 1 chrIII:13411358-13411438 ( 11) CCCCACGC 1 chrII:4942540-4942620 ( 31) CGCCACCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCCACGC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.8333 E= 8.5e-001 -982 224 -982 -982 -982 7 183 -982 -982 224 -982 -982 -982 224 -982 -982 182 -982 -982 -982 -982 224 -982 -982 -982 -93 203 -982 -982 224 -982 -982 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCCACGC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 9 E= 8.5e-001 0.000000 1.000000 0.000000 0.000000 0.000000 0.222222 0.777778 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.111111 0.888889 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCCACGC MEME-4 regular expression -------------------------------------------------------------------------------- C[GC]CCACGC -------------------------------------------------------------------------------- Time 17.66 secs. ******************************************************************************** ******************************************************************************** MOTIF TAACCACT MEME-5 width = 8 sites = 18 llr = 173 E-value = 1.0e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif TAACCACT MEME-5 Description -------------------------------------------------------------------------------- Simplified A :79::9:: pos.-specific C :2:aa:a: probability G :11::1:: matrix T a::::::a bits 2.2 ** * 2.0 ** * 1.8 * ** ** 1.6 * ** ** Relative 1.3 * ****** Entropy 1.1 * ****** (13.8 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TAACCACT consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAACCACT MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrI:8530118-8530198 61 1.78e-05 CCATAAATCC TAACCACT AGACCACAAC chrII:5577233-5577313 19 1.78e-05 GCAGACGTGA TAACCACT ACACCATAGG chrV:6551902-6551982 13 1.78e-05 TCCATCGCCT TAACCACT CGGCCACCTG chrII:9211776-9211856 63 1.78e-05 GACCTAAGGA TAACCACT GACTCTACAG chrI:11803372-11803452 5 1.78e-05 TCCT TAACCACT CGGACATGAC chrX:16271316-16271396 31 1.78e-05 CCATAAATCC TAACCACT AGACCACAAC chrX:16285317-16285397 29 1.78e-05 CCATAAATCC TAACCACT AGACCACAAC chrX:3793546-3793626 70 1.78e-05 GCAGACGTGA TAACCACT ACA chrV:3686096-3686176 17 1.78e-05 GCAAAATGGG TAACCACT AGGCTATGCA chrX:16604763-16604843 8 3.11e-05 CGGATAC TCACCACT ATACTACCGA chrIV:322651-322731 32 3.11e-05 acgcggatac tcaccact atactaccga chrX:16619329-16619409 55 3.11e-05 acgcggatac tcaccact atactaccga chrX:14228880-14228960 40 4.48e-05 AAAAAACATT TGACCACT GAGCGGATCG chrX:8945099-8945179 61 4.48e-05 CAAAAAGATT TGACCACT GAGCGGATCG chrX:9091587-9091667 21 7.22e-05 TCCTGAGTGC TAACCGCT ACACCATGGA chrX:9078299-9078379 6 7.22e-05 AGTGC TAACCGCT ACACCATGGA chrV:5667490-5667570 26 7.22e-05 CCAAAACTTT TAGCCACT TGACCATGAT chrII:8441656-8441736 28 7.22e-05 GCAAAACTTT TAGCCACT AAGCCAGCAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAACCACT MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:8530118-8530198 1.8e-05 60_[+5]_12 chrII:5577233-5577313 1.8e-05 18_[+5]_54 chrV:6551902-6551982 1.8e-05 12_[+5]_60 chrII:9211776-9211856 1.8e-05 62_[+5]_10 chrI:11803372-11803452 1.8e-05 4_[+5]_68 chrX:16271316-16271396 1.8e-05 30_[+5]_42 chrX:16285317-16285397 1.8e-05 28_[+5]_44 chrX:3793546-3793626 1.8e-05 69_[+5]_3 chrV:3686096-3686176 1.8e-05 16_[+5]_56 chrX:16604763-16604843 3.1e-05 7_[+5]_65 chrIV:322651-322731 3.1e-05 31_[+5]_41 chrX:16619329-16619409 3.1e-05 54_[+5]_18 chrX:14228880-14228960 4.5e-05 39_[+5]_33 chrX:8945099-8945179 4.5e-05 60_[+5]_12 chrX:9091587-9091667 7.2e-05 20_[+5]_52 chrX:9078299-9078379 7.2e-05 5_[+5]_67 chrV:5667490-5667570 7.2e-05 25_[+5]_47 chrII:8441656-8441736 7.2e-05 27_[+5]_45 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAACCACT MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TAACCACT width=8 seqs=18 chrI:8530118-8530198 ( 61) TAACCACT 1 chrII:5577233-5577313 ( 19) TAACCACT 1 chrV:6551902-6551982 ( 13) TAACCACT 1 chrII:9211776-9211856 ( 63) TAACCACT 1 chrI:11803372-11803452 ( 5) TAACCACT 1 chrX:16271316-16271396 ( 31) TAACCACT 1 chrX:16285317-16285397 ( 29) TAACCACT 1 chrX:3793546-3793626 ( 70) TAACCACT 1 chrV:3686096-3686176 ( 17) TAACCACT 1 chrX:16604763-16604843 ( 8) TCACCACT 1 chrIV:322651-322731 ( 32) TCACCACT 1 chrX:16619329-16619409 ( 55) TCACCACT 1 chrX:14228880-14228960 ( 40) TGACCACT 1 chrX:8945099-8945179 ( 61) TGACCACT 1 chrX:9091587-9091667 ( 21) TAACCGCT 1 chrX:9078299-9078379 ( 6) TAACCGCT 1 chrV:5667490-5667570 ( 26) TAGCCACT 1 chrII:8441656-8441736 ( 28) TAGCCACT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAACCACT MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.1187 E= 1.0e+000 -1081 -1081 -1081 180 135 -35 -97 -1081 165 -1081 -97 -1081 -1081 224 -1081 -1081 -1081 224 -1081 -1081 165 -1081 -97 -1081 -1081 224 -1081 -1081 -1081 -1081 -1081 180 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAACCACT MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 18 E= 1.0e+000 0.000000 0.000000 0.000000 1.000000 0.722222 0.166667 0.111111 0.000000 0.888889 0.000000 0.111111 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.888889 0.000000 0.111111 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAACCACT MEME-5 regular expression -------------------------------------------------------------------------------- TAACCACT -------------------------------------------------------------------------------- Time 21.23 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:13433674-13433754 8.85e-01 80 chrIII:4172423-4172503 6.14e-01 80 chrX:13293210-13293290 1.65e-01 31_[+1(2.92e-05)]_41 chrIII:2030965-2031045 7.56e-01 80 chrV:19521417-19521497 1.13e-01 80 chrIV:16657729-16657809 9.68e-01 80 chrV:13415558-13415638 7.16e-01 80 chrX:9090711-9090791 2.29e-01 80 chrX:487790-487870 1.14e-02 31_[+3(1.41e-05)]_41 chrI:2069109-2069189 8.64e-01 80 chrX:13443429-13443509 2.92e-02 80 chrIII:13411358-13411438 1.04e-02 10_[+4(1.14e-05)]_62 chrIV:6117854-6117934 2.06e-02 80 chrIII:4449496-4449576 1.15e-01 80 chrX:9237897-9237977 6.40e-01 80 chrV:15480007-15480087 2.51e-01 80 chrI:109649-109729 1.26e-01 80 chrM:11675-11755 9.67e-01 80 chrV:15454500-15454580 7.17e-01 80 chrIII:9617057-9617137 7.76e-01 80 chrIV:11377548-11377628 9.18e-01 80 chrX:9238842-9238922 5.96e-03 28_[+3(1.41e-05)]_44 chrX:16894185-16894265 8.26e-01 80 chrIV:11323753-11323833 6.07e-02 15_[+1(5.07e-05)]_57 chrIV:7558869-7558949 1.32e-01 80 chrIV:12570566-12570646 9.86e-01 80 chrX:422347-422427 4.71e-01 80 chrM:3312-3392 6.95e-01 80 chrIII:11091170-11091250 5.55e-01 80 chrX:16042581-16042661 2.92e-02 38_[+1(1.45e-05)]_34 chrX:14679171-14679251 2.55e-02 40_[+1(4.00e-05)]_32 chrIV:16503775-16503855 9.44e-01 80 chrX:8640782-8640862 2.00e-06 54_[+2(7.91e-06)]_10_[+4(5.76e-06)] chrX:8152733-8152813 8.21e-01 80 chrIII:698974-699054 1.75e-01 80 chrX:10667632-10667712 7.20e-02 10_[+1(2.92e-05)]_62 chrI:14759198-14759278 5.88e-01 80 chrX:7378778-7378858 1.70e-01 80 chrV:3686096-3686176 6.33e-02 16_[+5(1.78e-05)]_56 chrIV:2808368-2808448 1.93e-01 80 chrII:7003111-7003191 4.20e-01 80 chrII:8187797-8187877 9.44e-01 80 chrX:14162101-14162181 9.78e-01 80 chrIV:17089094-17089174 8.32e-01 80 chrIV:4710490-4710570 8.40e-01 80 chrIV:7083428-7083508 2.69e-01 80 chrIV:3296868-3296948 9.71e-01 80 chrIV:16775110-16775190 2.63e-01 80 chrI:5775157-5775237 4.49e-01 80 chrV:15767579-15767659 5.44e-01 80 chrII:13521345-13521425 1.63e-01 80 chrM:11384-11464 1.00e+00 80 chrX:5709304-5709384 7.32e-01 80 chrIV:7487686-7487766 7.23e-01 80 chrX:10732017-10732097 9.43e-05 14_[+2(7.91e-06)]_10_[+4(5.76e-06)]_\ 40 chrX:9024388-9024468 4.46e-02 27_[+4(1.14e-05)]_45 chrII:8441656-8441736 1.17e-01 27_[+5(7.22e-05)]_45 chrIII:2811428-2811508 9.74e-01 80 chrM:3606-3686 2.24e-01 80 chrM:10155-10235 1.00e+00 80 chrI:13953298-13953378 4.40e-01 80 chrX:4410701-4410781 9.75e-03 [+1(2.92e-05)]_72 chrX:11163349-11163429 5.31e-03 80 chrII:4703229-4703309 9.36e-01 80 chrX:8381790-8381870 3.07e-03 47_[+2(4.85e-05)]_25 chrIII:12499476-12499556 9.00e-01 80 chrX:9025719-9025799 5.50e-01 80 chrI:946150-946230 7.39e-01 80 chrII:12542807-12542887 5.33e-01 80 chrX:3793546-3793626 3.35e-05 60_[+2(1.86e-05)]_1_[+5(1.78e-05)]_\ 3 chrI:378890-378970 7.57e-01 80 chrII:2921283-2921363 1.07e-01 80 chrII:6898118-6898198 3.47e-01 80 chrV:5667490-5667570 2.46e-01 25_[+5(7.22e-05)]_47 chrX:13283663-13283743 3.11e-01 80 chrV:14999761-14999841 7.93e-01 80 chrV:8247560-8247640 9.14e-01 80 chrIII:8639331-8639411 5.55e-02 72_[+1(1.45e-05)] chrII:6491322-6491402 1.37e-01 80 chrM:8173-8253 9.99e-01 80 chrIV:4930992-4931072 3.19e-01 80 chrV:14419212-14419292 7.45e-01 80 chrV:3163327-3163407 7.93e-01 80 chrM:11093-11173 9.96e-01 80 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chrIV:15931962-15932042 9.37e-01 80 chrX:14478894-14478974 5.94e-01 80 chrX:8945099-8945179 8.61e-03 60_[+5(4.48e-05)]_12 chrX:10078159-10078239 5.76e-01 80 chrX:8939472-8939552 8.66e-01 80 chrX:7794652-7794732 3.24e-02 [+1(2.92e-05)]_72 chrIII:1600821-1600901 1.24e-04 42_[+2(7.91e-06)]_30 chrIV:4450087-4450167 3.90e-01 80 chrX:16271316-16271396 1.59e-02 30_[+5(1.78e-05)]_42 chrI:11803372-11803452 5.40e-02 4_[+5(1.78e-05)]_68 chrV:10238072-10238152 6.39e-01 80 chrX:2528074-2528154 5.80e-02 17_[+1(2.92e-05)]_55 chrI:1157522-1157602 7.77e-01 80 chrM:7090-7170 9.21e-01 80 chrIV:7043680-7043760 5.25e-01 80 chrM:1012-1092 9.70e-01 80 chrI:12229387-12229467 7.06e-01 80 chrM:6037-6117 8.98e-01 80 chrI:9327509-9327589 9.99e-01 80 chrV:5592047-5592127 4.30e-01 80 chrX:7906568-7906648 3.66e-02 66_[+1(2.92e-05)]_6 chrIV:14790611-14790691 5.40e-01 80 chrX:10148553-10148633 6.36e-01 80 chrM:9087-9167 9.43e-01 80 chrIV:12417949-12418029 8.76e-05 19_[+2(7.91e-06)]_10_[+4(5.76e-06)]_\ 35 chrX:15200862-15200942 3.39e-01 80 chrI:10187376-10187456 9.15e-01 80 chrIII:7338715-7338795 2.95e-01 80 chrX:6867879-6867959 2.17e-02 80 chrX:16503204-16503284 7.90e-01 80 chrIV:991325-991405 4.63e-01 80 chrX:15619484-15619564 1.76e-03 27_[+2(1.86e-05)]_45 chrIII:3249186-3249266 5.79e-01 80 chrIV:1711196-1711276 1.41e-01 80 chrX:9078299-9078379 8.88e-02 5_[+5(7.22e-05)]_67 chrX:7681092-7681172 8.08e-01 80 chrII:11167207-11167287 5.24e-02 12_[+3(8.41e-05)]_60 chrII:11917887-11917967 7.33e-01 80 chrX:9373069-9373149 2.61e-01 80 chrII:12541809-12541889 3.43e-01 80 chrI:379094-379174 1.00e+00 80 chrX:10124523-10124603 2.40e-01 80 chrV:11175700-11175780 5.32e-02 80 chrX:11645754-11645834 9.88e-01 80 chrM:4669-4749 9.08e-01 80 chrM:4874-4954 7.91e-01 80 chrM:1213-1293 9.23e-01 80 chrM:2205-2285 9.61e-01 80 chrIII:3869580-3869660 9.88e-01 80 chrIV:4347755-4347835 5.56e-01 80 chrV:12510130-12510210 1.00e+00 80 chrIII:5914882-5914962 8.12e-01 80 chrM:6238-6318 9.99e-01 80 chrIV:5541382-5541462 6.96e-01 80 chrM:12624-12704 9.93e-01 80 chrV:6559724-6559804 4.53e-02 39_[+3(1.41e-05)]_33 chrV:13669373-13669453 9.64e-01 80 chrX:7773875-7773955 9.70e-01 80 chrIII:9060466-9060546 2.93e-01 80 chrII:3567729-3567809 6.18e-02 46_[+1(5.07e-05)]_26 chrII:9211776-9211856 5.37e-03 62_[+5(1.78e-05)]_10 chrM:12413-12493 7.79e-01 80 chrX:8646453-8646533 2.35e-01 80 chrX:4444933-4445013 9.87e-01 80 chrM:9291-9371 9.61e-01 80 chrX:16619329-16619409 5.08e-04 41_[+2(7.91e-06)]_5_[+5(3.11e-05)]_\ 18 chrV:7858061-7858141 4.08e-01 80 chrIV:322651-322731 3.29e-04 18_[+2(7.91e-06)]_5_[+5(3.11e-05)]_\ 41 chrIV:14327121-14327201 2.85e-01 80 chrV:6551902-6551982 5.12e-02 12_[+5(1.78e-05)]_60 chrX:16298345-16298425 5.60e-02 46_[+1(2.92e-05)]_26 chrX:2531430-2531510 5.90e-01 80 chrI:10516909-10516989 4.62e-01 80 chrI:4645401-4645481 8.68e-01 80 chrIII:6373911-6373991 5.91e-01 80 chrIV:2665768-2665848 1.43e-01 35_[+3(8.41e-05)]_37 chrII:5577233-5577313 9.52e-04 9_[+2(1.86e-05)]_1_[+5(1.78e-05)]_\ 54 chrIV:14225040-14225120 2.35e-01 80 chrV:6335367-6335447 2.55e-02 37_[+3(1.41e-05)]_35 chrX:13781549-13781629 4.93e-01 80 chrIII:10746417-10746497 1.57e-02 60_[+2(7.75e-05)]_12 chrX:11933682-11933762 1.64e-02 52_[+3(1.41e-05)]_20 chrIV:13701627-13701707 5.58e-01 80 chrV:9318155-9318235 5.32e-02 53_[+3(1.41e-05)]_19 chrIV:16400920-16401000 3.61e-02 25_[+1(2.92e-05)]_47 chrV:19521622-19521702 6.87e-03 35_[+1(4.00e-05)]_37 chrI:852187-852267 1.56e-02 45_[+4(5.76e-06)]_27 chrIV:16398351-16398431 4.97e-03 39_[+3(1.41e-05)]_33 chrII:4942540-4942620 1.70e-04 13_[+2(6.69e-05)]_9_[+4(1.70e-05)]_\ 42 chrI:8530118-8530198 8.41e-03 60_[+5(1.78e-05)]_12 chrX:14228880-14228960 5.46e-03 39_[+5(4.48e-05)]_33 chrIV:2805758-2805838 8.16e-01 80 chrIII:11090285-11090365 9.80e-02 80 chrIV:8377646-8377726 5.21e-01 80 chrIV:4880793-4880873 7.36e-01 80 chrII:6587539-6587619 1.00e+00 80 chrIV:991533-991613 4.70e-01 80 chrV:15547940-15548020 6.08e-01 80 chrX:11252621-11252701 2.98e-06 11_[+2(7.91e-06)]_10_[+4(5.76e-06)]_\ 15_[+3(8.41e-05)]_20 chrIV:15931303-15931383 2.79e-01 80 chrX:9091587-9091667 9.52e-03 20_[+5(7.22e-05)]_52 chrIV:2657482-2657562 4.02e-01 80 chrIII:931564-931644 9.64e-01 80 chrI:6847209-6847289 2.69e-01 80 chrII:8547092-8547172 6.23e-01 80 chrX:6286363-6286443 7.58e-02 7_[+1(2.92e-05)]_65 chrX:10963796-10963876 2.86e-01 80 chrV:14468681-14468761 2.92e-01 80 chrX:5407400-5407480 3.57e-03 24_[+1(5.07e-05)]_23_[+2(4.85e-05)]_\ 17 chrX:5319355-5319435 1.60e-01 80 chrIV:7506228-7506308 1.30e-01 80 chrI:12065852-12065932 7.94e-02 80 chrX:15297579-15297659 9.18e-01 80 chrIV:6481183-6481263 1.84e-02 28_[+1(1.45e-05)]_44 chrIII:4491409-4491489 5.12e-01 80 chrII:14018433-14018513 1.65e-02 [+2(1.86e-05)]_72 chrI:933474-933554 6.83e-01 80 chrIV:11026050-11026130 5.15e-01 80 chrIV:8428574-8428654 4.61e-02 80 chrI:2410108-2410188 1.41e-02 66_[+1(2.92e-05)]_6 chrX:8971611-8971691 3.00e-02 48_[+1(1.45e-05)]_24 chrI:6164191-6164271 3.29e-04 6_[+3(1.41e-05)]_37_[+1(4.00e-05)]_\ 21 chrII:6248651-6248731 1.79e-02 47_[+1(4.00e-05)]_25 chrIV:9477718-9477798 5.19e-02 80 chrIV:3336797-3336877 2.32e-01 80 chrX:5707995-5708075 4.56e-01 80 chrX:6220053-6220133 6.61e-04 59_[+2(7.91e-06)]_13 chrV:12491227-12491307 1.37e-01 80 chrIV:8891131-8891211 7.40e-01 80 chrX:16604763-16604843 7.63e-02 7_[+5(3.11e-05)]_65 chrIII:13464688-13464768 3.78e-01 80 chrIV:4468068-4468148 9.03e-01 80 chrX:8650640-8650720 7.39e-01 80 chrIV:14013819-14013899 5.12e-01 80 chrIV:867052-867132 1.95e-02 44_[+2(3.28e-05)]_28 chrI:11584754-11584834 7.00e-03 39_[+3(1.41e-05)]_33 chrX:6903150-6903230 3.51e-01 80 chrX:16378071-16378151 9.73e-01 80 chrV:11980287-11980367 9.49e-01 80 chrII:5782004-5782084 6.04e-01 80 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c28n01.farnam.hpc.yale.internal ********************************************************************************