******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/worm/fasta/RankLinear2.0_40/mes-2.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrII:11176598-11176678 1.0000 80 chrX:2857582-2857662 1.0000 80 chrII:11106470-11106550 1.0000 80 chrX:11689228-11689308 1.0000 80 chrX:14525528-14525608 1.0000 80 chrIII:9798662-9798742 1.0000 80 chrIII:8967798-8967878 1.0000 80 chrII:6356145-6356225 1.0000 80 chrI:4242527-4242607 1.0000 80 chrI:4959185-4959265 1.0000 80 chrI:10192899-10192979 1.0000 80 chrIV:12712174-12712254 1.0000 80 chrV:12952453-12952533 1.0000 80 chrIV:12278674-12278754 1.0000 80 chrI:2634677-2634757 1.0000 80 chrV:15585903-15585983 1.0000 80 chrII:2991801-2991881 1.0000 80 chrV:10031929-10032009 1.0000 80 chrII:2919218-2919298 1.0000 80 chrII:10926337-10926417 1.0000 80 chrIII:8829383-8829463 1.0000 80 chrIV:10197478-10197558 1.0000 80 chrI:9080110-9080190 1.0000 80 chrV:5790662-5790742 1.0000 80 chrIII:6367870-6367950 1.0000 80 chrII:11464073-11464153 1.0000 80 chrIV:13289519-13289599 1.0000 80 chrIV:1347137-1347217 1.0000 80 chrX:16376139-16376219 1.0000 80 chrIII:4986946-4987026 1.0000 80 chrI:11222136-11222216 1.0000 80 chrV:156209-156289 1.0000 80 chrI:9955959-9956039 1.0000 80 chrIII:5959181-5959261 1.0000 80 chrI:636772-636852 1.0000 80 chrIV:4712570-4712650 1.0000 80 chrI:9286676-9286756 1.0000 80 chrI:5118929-5119009 1.0000 80 chrII:6950753-6950833 1.0000 80 chrIV:8019930-8020010 1.0000 80 chrI:13384681-13384761 1.0000 80 chrI:8255176-8255256 1.0000 80 chrIV:10242908-10242988 1.0000 80 chrIV:13487156-13487236 1.0000 80 chrII:291304-291384 1.0000 80 chrX:10668030-10668110 1.0000 80 chrIII:5803099-5803179 1.0000 80 chrI:3817865-3817945 1.0000 80 chrII:11542529-11542609 1.0000 80 chrII:11860906-11860986 1.0000 80 chrIV:6369646-6369726 1.0000 80 chrII:14401275-14401355 1.0000 80 chrII:10247714-10247794 1.0000 80 chrV:20090860-20090940 1.0000 80 chrI:13835185-13835265 1.0000 80 chrI:10653684-10653764 1.0000 80 chrIII:8683821-8683901 1.0000 80 chrII:11578500-11578580 1.0000 80 chrX:4254989-4255069 1.0000 80 chrII:7397619-7397699 1.0000 80 chrII:1123354-1123434 1.0000 80 chrIII:9126054-9126134 1.0000 80 chrII:6056092-6056172 1.0000 80 chrIV:813491-813571 1.0000 80 chrX:4853178-4853258 1.0000 80 chrX:5205704-5205784 1.0000 80 chrII:7123204-7123284 1.0000 80 chrIV:257289-257369 1.0000 80 chrI:2144181-2144261 1.0000 80 chrII:5819830-5819910 1.0000 80 chrX:2572762-2572842 1.0000 80 chrIV:4277857-4277937 1.0000 80 chrII:10714394-10714474 1.0000 80 chrIII:8158559-8158639 1.0000 80 chrIV:11592956-11593036 1.0000 80 chrV:12743935-12744015 1.0000 80 chrII:14563960-14564040 1.0000 80 chrIII:7359194-7359274 1.0000 80 chrIII:1540262-1540342 1.0000 80 chrII:7879478-7879558 1.0000 80 chrIII:9776093-9776173 1.0000 80 chrIII:8310361-8310441 1.0000 80 chrIII:4187030-4187110 1.0000 80 chrIV:8205394-8205474 1.0000 80 chrI:12904050-12904130 1.0000 80 chrIV:9336685-9336765 1.0000 80 chrIV:11652114-11652194 1.0000 80 chrIII:13439561-13439641 1.0000 80 chrIV:6747818-6747898 1.0000 80 chrI:4770014-4770094 1.0000 80 chrIV:3506103-3506183 1.0000 80 chrII:11175502-11175582 1.0000 80 chrI:7224678-7224758 1.0000 80 chrIII:4704077-4704157 1.0000 80 chrII:14857078-14857158 1.0000 80 chrIV:17118739-17118819 1.0000 80 chrV:2603175-2603255 1.0000 80 chrIV:4171902-4171982 1.0000 80 chrIV:13783701-13783781 1.0000 80 chrIV:9797504-9797584 1.0000 80 chrV:2122660-2122740 1.0000 80 chrIII:11093632-11093712 1.0000 80 chrI:2385106-2385186 1.0000 80 chrIV:15528994-15529074 1.0000 80 chrII:8525493-8525573 1.0000 80 chrX:3379239-3379319 1.0000 80 chrX:1853734-1853814 1.0000 80 chrII:14754358-14754438 1.0000 80 chrIV:2896125-2896205 1.0000 80 chrIV:6097707-6097787 1.0000 80 chrIII:4922185-4922265 1.0000 80 chrII:7615571-7615651 1.0000 80 chrIV:16422325-16422405 1.0000 80 chrI:10718342-10718422 1.0000 80 chrIII:10895971-10896051 1.0000 80 chrIII:4878440-4878520 1.0000 80 chrIII:6379270-6379350 1.0000 80 chrIII:8268431-8268511 1.0000 80 chrII:9319561-9319641 1.0000 80 chrIV:9899414-9899494 1.0000 80 chrV:10441252-10441332 1.0000 80 chrIII:5864414-5864494 1.0000 80 chrII:14480023-14480103 1.0000 80 chrI:10374014-10374094 1.0000 80 chrII:6197027-6197107 1.0000 80 chrI:14496563-14496643 1.0000 80 chrIII:5102806-5102886 1.0000 80 chrI:14179760-14179840 1.0000 80 chrIII:10120218-10120298 1.0000 80 chrII:147646-147726 1.0000 80 chrIII:1223861-1223941 1.0000 80 chrX:2488535-2488615 1.0000 80 chrX:3101692-3101772 1.0000 80 chrIV:9777713-9777793 1.0000 80 chrV:13591667-13591747 1.0000 80 chrIV:12051196-12051276 1.0000 80 chrV:13625760-13625840 1.0000 80 chrIII:4999032-4999112 1.0000 80 chrIII:6625450-6625530 1.0000 80 chrX:13584990-13585070 1.0000 80 chrIV:9858261-9858341 1.0000 80 chrV:9536676-9536756 1.0000 80 chrI:6949504-6949584 1.0000 80 chrI:638321-638401 1.0000 80 chrIII:8700705-8700785 1.0000 80 chrIII:3855021-3855101 1.0000 80 chrI:14101189-14101269 1.0000 80 chrIV:6606757-6606837 1.0000 80 chrIII:11974605-11974685 1.0000 80 chrII:1663678-1663758 1.0000 80 chrI:3192726-3192806 1.0000 80 chrIV:11856425-11856505 1.0000 80 chrX:8110066-8110146 1.0000 80 chrIII:5190352-5190432 1.0000 80 chrV:13409228-13409308 1.0000 80 chrV:14597945-14598025 1.0000 80 chrII:2059134-2059214 1.0000 80 chrI:2620455-2620535 1.0000 80 chrII:5715895-5715975 1.0000 80 chrX:14127476-14127556 1.0000 80 chrII:4993943-4994023 1.0000 80 chrI:4958780-4958860 1.0000 80 chrII:14401655-14401735 1.0000 80 chrIII:3719751-3719831 1.0000 80 chrIV:7816551-7816631 1.0000 80 chrIII:5047394-5047474 1.0000 80 chrIV:1657221-1657301 1.0000 80 chrV:14425263-14425343 1.0000 80 chrV:13757504-13757584 1.0000 80 chrI:8369790-8369870 1.0000 80 chrI:8962064-8962144 1.0000 80 chrI:3330922-3331002 1.0000 80 chrX:5486116-5486196 1.0000 80 chrI:12575315-12575395 1.0000 80 chrII:11916333-11916413 1.0000 80 chrIV:12123034-12123114 1.0000 80 chrX:10078838-10078918 1.0000 80 chrII:6776504-6776584 1.0000 80 chrIII:11286241-11286321 1.0000 80 chrX:7798514-7798594 1.0000 80 chrI:4302345-4302425 1.0000 80 chrII:13083904-13083984 1.0000 80 chrI:10173209-10173289 1.0000 80 chrII:11830789-11830869 1.0000 80 chrIII:5233313-5233393 1.0000 80 chrX:8109670-8109750 1.0000 80 chrIV:9196431-9196511 1.0000 80 chrI:7494695-7494775 1.0000 80 chrIII:9331230-9331310 1.0000 80 chrI:7926436-7926516 1.0000 80 chrIV:8540428-8540508 1.0000 80 chrIII:7584426-7584506 1.0000 80 chrIII:6604451-6604531 1.0000 80 chrIII:5989514-5989594 1.0000 80 chrIII:11915828-11915908 1.0000 80 chrIV:3136654-3136734 1.0000 80 chrIII:3248812-3248892 1.0000 80 chrIII:5076720-5076800 1.0000 80 chrX:7569805-7569885 1.0000 80 chrI:3829424-3829504 1.0000 80 chrII:8746916-8746996 1.0000 80 chrIII:5594513-5594593 1.0000 80 chrIV:572620-572700 1.0000 80 chrIII:13423592-13423672 1.0000 80 chrIII:1249368-1249448 1.0000 80 chrIV:4720698-4720778 1.0000 80 chrII:7537769-7537849 1.0000 80 chrX:2694871-2694951 1.0000 80 chrII:14142212-14142292 1.0000 80 chrI:8511415-8511495 1.0000 80 chrII:12914855-12914935 1.0000 80 chrIII:11505377-11505457 1.0000 80 chrX:16814125-16814205 1.0000 80 chrI:6562518-6562598 1.0000 80 chrX:14526214-14526294 1.0000 80 chrIII:5692839-5692919 1.0000 80 chrIII:4380980-4381060 1.0000 80 chrII:5429872-5429952 1.0000 80 chrIII:5906208-5906288 1.0000 80 chrV:724958-725038 1.0000 80 chrI:8434360-8434440 1.0000 80 chrIV:2846405-2846485 1.0000 80 chrIII:7067536-7067616 1.0000 80 chrII:2787280-2787360 1.0000 80 chrI:4215755-4215835 1.0000 80 chrIII:4332695-4332775 1.0000 80 chrI:2830391-2830471 1.0000 80 chrX:2559577-2559657 1.0000 80 chrI:14756434-14756514 1.0000 80 chrIII:12673519-12673599 1.0000 80 chrI:3930560-3930640 1.0000 80 chrV:16022769-16022849 1.0000 80 chrX:8104065-8104145 1.0000 80 chrIII:4343276-4343356 1.0000 80 chrII:14474888-14474968 1.0000 80 chrX:7682101-7682181 1.0000 80 chrV:7820417-7820497 1.0000 80 chrII:7699173-7699253 1.0000 80 chrI:7159328-7159408 1.0000 80 chrI:9114071-9114151 1.0000 80 chrI:10720329-10720409 1.0000 80 chrI:8759876-8759956 1.0000 80 chrIV:5548989-5549069 1.0000 80 chrII:13834962-13835042 1.0000 80 chrIII:10931009-10931089 1.0000 80 chrI:14711017-14711097 1.0000 80 chrV:20832055-20832135 1.0000 80 chrIV:12834473-12834553 1.0000 80 chrI:5281800-5281880 1.0000 80 chrIII:11947696-11947776 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/worm/inference_raw/MEME/RankLinear2.0_40_mes-2/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/worm/fasta/RankLinear2.0_40/mes-2.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.26 C 0.241 G 0.245 T 0.254 Background letter frequencies (from file dataset with add-one prior applied): A 0.259 C 0.241 G 0.245 T 0.254 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF YGGCCKAG MEME-1 width = 8 sites = 97 llr = 798 E-value = 9.1e-075 ******************************************************************************** -------------------------------------------------------------------------------- Motif YGGCCKAG MEME-1 Description -------------------------------------------------------------------------------- Simplified A :::1:26: pos.-specific C 4::9a:2: probability G :aa::4:a matrix T 6::::52: bits 2.1 ** * * 1.8 ** * * 1.6 ** * * 1.4 **** * Relative 1.2 **** * Entropy 1.0 ***** * (11.9 bits) 0.8 ***** * 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TGGCCTAG consensus C G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGGCCKAG MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:7569805-7569885 41 1.43e-05 CACGGCCGCG TGGCCTAG TTTTTTCAAT chrIV:7816551-7816631 39 1.43e-05 CACCACCGTG TGGCCTAG GAAACTCTTG chrII:4993943-4994023 59 1.43e-05 TCCTAGTCCA TGGCCTAG AAAACTCCAT chrI:638321-638401 64 1.43e-05 CTTGCACGCA TGGCCTAG TGGGTTAAG chrV:9536676-9536756 43 1.43e-05 CACCCAAACG TGGCCTAG CAATACCCAA chrIII:10120218-10120298 22 1.43e-05 AAATAAATGC TGGCCTAG AAAACGAACA chrIII:5864414-5864494 33 1.43e-05 TGTCACCAAA TGGCCTAG GTTTTCAACC chrII:9319561-9319641 15 1.43e-05 AAACAGCCAA TGGCCTAG AGTCCACCAA chrII:14754358-14754438 33 1.43e-05 AAAGTGCAGT TGGCCTAG AAAGCGCTAG chrIV:9797504-9797584 32 1.43e-05 ACAAACGCCT TGGCCTAG AACTTTCACA chrIII:13439561-13439641 25 1.43e-05 AAAATATCGG TGGCCTAG TGGCCGTGGA chrIII:4187030-4187110 18 1.43e-05 TGCATTATCA TGGCCTAG TTTTGCAATG chrII:14563960-14564040 7 1.43e-05 AGGCGG TGGCCTAG CCGGCGCAGC chrX:5205704-5205784 41 1.43e-05 CGAGCGGCCG TGGCCTAG CGTTTGCACT chrX:4254989-4255069 38 1.43e-05 CACACAACGC TGGCCTAG AATTCTCCAT chrII:11578500-11578580 30 1.43e-05 TAAACCTGCG TGGCCTAG GTGTAAGCGT chrIII:8683821-8683901 40 1.43e-05 CGGAAGGCCG TGGCCTAG GATTTGCGCG chrIII:5803099-5803179 29 1.43e-05 GTGGCCGCGG TGGCCTAG TTTTCACGGC chrI:8255176-8255256 31 1.43e-05 AAACTGACGG TGGCCTAG AATCCGACAA chrII:6950753-6950833 29 1.43e-05 GCTTGAATGG TGGCCTAG AAAATCACAC chrI:5118929-5119009 2 1.43e-05 A TGGCCTAG AATTTCAACT chrI:636772-636852 33 1.43e-05 AACATGGCCG TGGCCTAG CGTTCCCCTC chrIII:5959181-5959261 41 1.43e-05 TTGCGCTGGT TGGCCTAG CAGCTGCGGT chrX:16376139-16376219 32 1.43e-05 CGATTCGCCG TGGCCTAG AAACCGCGAG chrIV:13289519-13289599 14 1.43e-05 GTTTGAACGG TGGCCTAG AATCTGCACG chrII:11464073-11464153 29 1.43e-05 AAATCTACAC TGGCCTAG AACATGTTAG chrIII:6367870-6367950 9 1.43e-05 ACACTCGA TGGCCTAG AAATCTCAAC chrV:10031929-10032009 30 1.43e-05 CACGGCCGTG TGGCCTAG AAACTTCTTG chrV:15585903-15585983 24 1.43e-05 gaacgggaca tggcctag aaagttgcga chrI:10192899-10192979 41 1.43e-05 GACACGGCCG TGGCCTAG AATTCTCGGA chrIII:12673519-12673599 47 2.80e-05 CACGGCGTGG TGGCCGAG ACCCCGACTC chrIII:5233313-5233393 15 2.80e-05 ATAAAGGCCC TGGCCGAG TACACGGAGG chrX:2488535-2488615 25 2.80e-05 AACAACTTGA TGGCCGAG TTCTTGTGGC chrX:3379239-3379319 55 2.80e-05 GATTTGCGCA TGGCCGAG CCGGGAAGAA chrII:14857078-14857158 16 2.80e-05 CCCGCTGCGG TGGCCGAG TCCCTGCCGG chrIII:8158559-8158639 31 2.80e-05 CTTCACGTGA TGGCCGAG AACTCGAGGA chrII:1123354-1123434 13 2.80e-05 AAATAAATGG TGGCCGAG GAGGGGTTTT chrV:12952453-12952533 22 2.80e-05 CACGTCGCGC TGGCCGAG CCTTTGAGGA chrV:10441252-10441332 35 4.16e-05 TTTATGGCCG CGGCCTAG AATCCGACAA chrIV:4171902-4171982 35 4.16e-05 TTTCTGCCCG CGGCCTAG AAACCTCCGT chrIII:1540262-1540342 28 4.16e-05 CCCGTGGCCG CGGCCTAG AAATCCCAAC chrII:7397619-7397699 39 4.16e-05 CACGGCCGCG CGGCCTAG AAAACGTTTG chrV:20090860-20090940 19 4.16e-05 ACACTGGCCG CGGCCTAG AAAACTCCAA chrI:3817865-3817945 37 4.16e-05 TCCCAGCCGC CGGCCTAG TCTGCGGTGT chrIII:9798662-9798742 29 4.16e-05 GTATGGGCTG CGGCCTAG TTTCATTGAC chrV:13409228-13409308 30 5.46e-05 GAGGAGTACA CGGCCGAG AATCACAAAA chrX:13584990-13585070 36 5.46e-05 GCGCCACATA CGGCCGAG GTTTCACGCG chrII:147646-147726 23 5.46e-05 CTCTTGGCCG CGGCCGAG AGTGCGCTCT chrIV:6369646-6369726 35 5.46e-05 GAGGAGTACA CGGCCGAG TATCACACAA chrIV:1347137-1347217 15 5.46e-05 AAAGTGGCCG CGGCCGAG GAGGAAACCT chrIII:5594513-5594593 37 9.65e-05 ACCGGTTGAC TGGCCTTG ACCACGTTCG chrIV:13783701-13783781 14 9.65e-05 TCAAAAACCT TGGCCTTG GCCGAAAAAC chrV:16022769-16022849 34 1.23e-04 AATGTGGTGG TGGCCGCG TGGCCGCGGA chrX:7798514-7798594 9 1.23e-04 GGAGGGTG TGGCCGTG TAAGAGGGGG chrIII:5047394-5047474 55 1.23e-04 ATTGAATTGG TGGCCGTG GAAGAGAAAT chrIII:3855021-3855101 70 1.23e-04 AAAGCTAACG TGGCCGCG AGA chrIV:15528994-15529074 61 1.23e-04 GAAAGAGACG TGGCCGCG AGAGCTGCGC chrI:13835185-13835265 24 1.23e-04 GGGAAAATGA TGGCCGCG GCCGCCATTT chrII:11860906-11860986 17 1.23e-04 ACACCAGTGA TGGCCGCG TGGTTGCTCG chrIV:10242908-10242988 24 1.23e-04 GAAAACACAA TGGCCGCG AAAGTTTTCA chrIV:10197478-10197558 28 1.23e-04 GAGGTGGCCG TGGCCGTG AATGCAACCT chrIII:8967798-8967878 22 1.23e-04 TCGAAAATGG TGGCCGCG TGGCCGAACT chrX:11689228-11689308 33 1.23e-04 CAGTTGAAAA TGGCCGTG GCCGAACTTT chrII:5715895-5715975 51 1.37e-04 CGCCGCAGTT CGGCCAAG AATTTATTGG chrV:13591667-13591747 52 1.37e-04 GTACTCCTCT CGGCCAAG TCAGATGCAT chrII:12914855-12914935 46 1.87e-04 GGCGGATTCT CGGCCGTG TACTCCACTC chrIII:5190352-5190432 42 1.87e-04 CTGTAGTTCT CGGCCGTG TACTCCTCTC chrII:7615571-7615651 71 1.87e-04 TGAGTGCGAG CGGCCGCG TC chrIV:257289-257369 20 1.87e-04 GAGGAGTACA CGGCCGTG TGGTCTAGAA chrX:4853178-4853258 22 1.87e-04 GTCGTATCTT CGGCCGCG GCCACGACCA chrIV:8019930-8020010 11 1.87e-04 TCTCGTCCCT CGGCCGCG CTGAGATTTC chrIV:12278674-12278754 39 1.87e-04 CAACTTTTCT CGGCCGTG TACTCCTCGT chrII:6356145-6356225 49 1.87e-04 TGAAAAACTT CGGCCGTG AACAACACGA chrIII:4343276-4343356 40 2.03e-04 ACACGGCCGA TGGACTAG GAACACACTG chrII:7537769-7537849 32 2.03e-04 ATATGGCCGC TGGACTAG TATTTGTACG chrIII:8829383-8829463 29 2.03e-04 TACACGGCGG TGGACTAG TATTCCCCAT chrII:11106470-11106550 39 2.03e-04 CGGTTTTTAG TGGACTAG GCAACGCTCG chrIII:11286241-11286321 15 2.18e-04 AATGTCGAGA TGGACGAG GTTCCGGAGC chrIV:2896125-2896205 1 2.18e-04 . tggacgag aattctctac chrII:10714394-10714474 8 2.18e-04 TAATTAA TGGACGAG GTTTTGAAGA chrII:11176598-11176678 41 2.18e-04 ACGCGAGCTG TGGACGAG GAATCCGCCT chrI:5281800-5281880 43 3.00e-04 ACGAATTTCT CGGCCACG GCCATCAGTT chrI:14756434-14756514 42 3.00e-04 ACCTCGGTCA CGGCCATG CCACTTTTTT chrIII:4999032-4999112 20 3.00e-04 GGAGAATCCT CGGCCACG GCCACCAGAA chrV:13625760-13625840 35 3.00e-04 TCGAAATCGC CGGCCATG GTGTATGTTT chrV:2603175-2603255 39 3.00e-04 TCCTCGTCCA CGGCCATG CGAAATGCGC chrIV:9336685-9336765 52 3.00e-04 AGAAGAATAT CGGCCACG GCCACCGTCG chrII:7879478-7879558 73 3.00e-04 CCGGAGGCCA CGGCCATG chrIV:11592956-11593036 48 3.00e-04 TGCTAGTCCG CGGCCATG ACTAATCAGA chrIV:4712570-4712650 62 3.00e-04 CTCGGCCACC CGGCCACG AAAACTCGGC chrI:11222136-11222216 51 3.00e-04 ACCTAGTCCA CGGCCACG CGGCCACCGA chrI:9080110-9080190 29 3.00e-04 TGATGTTTTT CGGCCACG GCCACCGCAA chrII:2919218-2919298 44 3.00e-04 GCGGAAAAAT CGGCCACG TCCGCGCCGG chrIV:4720698-4720778 72 3.45e-04 TCCGATGGAC TGGACTTG C chrIV:12051196-12051276 49 3.74e-04 TTGTGGGTTT TGGACGTG AACACCAGAT chrII:11175502-11175582 69 3.88e-04 GGACTTCACT CGGACAAG TAAT chrIII:3248812-3248892 37 4.16e-04 TTGACGTTTG CGGACTCG AATGCGCACT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGGCCKAG MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:7569805-7569885 1.4e-05 40_[+1]_32 chrIV:7816551-7816631 1.4e-05 38_[+1]_34 chrII:4993943-4994023 1.4e-05 58_[+1]_14 chrI:638321-638401 1.4e-05 63_[+1]_9 chrV:9536676-9536756 1.4e-05 42_[+1]_30 chrIII:10120218-10120298 1.4e-05 21_[+1]_51 chrIII:5864414-5864494 1.4e-05 32_[+1]_40 chrII:9319561-9319641 1.4e-05 14_[+1]_58 chrII:14754358-14754438 1.4e-05 32_[+1]_40 chrIV:9797504-9797584 1.4e-05 31_[+1]_41 chrIII:13439561-13439641 1.4e-05 24_[+1]_48 chrIII:4187030-4187110 1.4e-05 17_[+1]_55 chrII:14563960-14564040 1.4e-05 6_[+1]_66 chrX:5205704-5205784 1.4e-05 40_[+1]_32 chrX:4254989-4255069 1.4e-05 37_[+1]_35 chrII:11578500-11578580 1.4e-05 29_[+1]_43 chrIII:8683821-8683901 1.4e-05 39_[+1]_33 chrIII:5803099-5803179 1.4e-05 28_[+1]_44 chrI:8255176-8255256 1.4e-05 30_[+1]_42 chrII:6950753-6950833 1.4e-05 28_[+1]_44 chrI:5118929-5119009 1.4e-05 1_[+1]_71 chrI:636772-636852 1.4e-05 32_[+1]_40 chrIII:5959181-5959261 1.4e-05 40_[+1]_32 chrX:16376139-16376219 1.4e-05 31_[+1]_41 chrIV:13289519-13289599 1.4e-05 13_[+1]_59 chrII:11464073-11464153 1.4e-05 28_[+1]_44 chrIII:6367870-6367950 1.4e-05 8_[+1]_64 chrV:10031929-10032009 1.4e-05 29_[+1]_43 chrV:15585903-15585983 1.4e-05 23_[+1]_49 chrI:10192899-10192979 1.4e-05 40_[+1]_32 chrIII:12673519-12673599 2.8e-05 46_[+1]_26 chrIII:5233313-5233393 2.8e-05 14_[+1]_58 chrX:2488535-2488615 2.8e-05 24_[+1]_48 chrX:3379239-3379319 2.8e-05 54_[+1]_18 chrII:14857078-14857158 2.8e-05 15_[+1]_57 chrIII:8158559-8158639 2.8e-05 30_[+1]_42 chrII:1123354-1123434 2.8e-05 12_[+1]_60 chrV:12952453-12952533 2.8e-05 21_[+1]_51 chrV:10441252-10441332 4.2e-05 34_[+1]_38 chrIV:4171902-4171982 4.2e-05 34_[+1]_38 chrIII:1540262-1540342 4.2e-05 27_[+1]_45 chrII:7397619-7397699 4.2e-05 38_[+1]_34 chrV:20090860-20090940 4.2e-05 18_[+1]_54 chrI:3817865-3817945 4.2e-05 36_[+1]_36 chrIII:9798662-9798742 4.2e-05 28_[+1]_44 chrV:13409228-13409308 5.5e-05 29_[+1]_43 chrX:13584990-13585070 5.5e-05 35_[+1]_37 chrII:147646-147726 5.5e-05 22_[+1]_50 chrIV:6369646-6369726 5.5e-05 34_[+1]_38 chrIV:1347137-1347217 5.5e-05 14_[+1]_58 chrIII:5594513-5594593 9.6e-05 36_[+1]_36 chrIV:13783701-13783781 9.6e-05 13_[+1]_59 chrV:16022769-16022849 0.00012 33_[+1]_39 chrX:7798514-7798594 0.00012 8_[+1]_64 chrIII:5047394-5047474 0.00012 54_[+1]_18 chrIII:3855021-3855101 0.00012 69_[+1]_3 chrIV:15528994-15529074 0.00012 60_[+1]_12 chrI:13835185-13835265 0.00012 23_[+1]_49 chrII:11860906-11860986 0.00012 16_[+1]_56 chrIV:10242908-10242988 0.00012 23_[+1]_49 chrIV:10197478-10197558 0.00012 27_[+1]_45 chrIII:8967798-8967878 0.00012 21_[+1]_51 chrX:11689228-11689308 0.00012 32_[+1]_40 chrII:5715895-5715975 0.00014 50_[+1]_22 chrV:13591667-13591747 0.00014 51_[+1]_21 chrII:12914855-12914935 0.00019 45_[+1]_27 chrIII:5190352-5190432 0.00019 41_[+1]_31 chrII:7615571-7615651 0.00019 70_[+1]_2 chrIV:257289-257369 0.00019 19_[+1]_53 chrX:4853178-4853258 0.00019 21_[+1]_51 chrIV:8019930-8020010 0.00019 10_[+1]_62 chrIV:12278674-12278754 0.00019 38_[+1]_34 chrII:6356145-6356225 0.00019 48_[+1]_24 chrIII:4343276-4343356 0.0002 39_[+1]_33 chrII:7537769-7537849 0.0002 31_[+1]_41 chrIII:8829383-8829463 0.0002 28_[+1]_44 chrII:11106470-11106550 0.0002 38_[+1]_34 chrIII:11286241-11286321 0.00022 14_[+1]_58 chrIV:2896125-2896205 0.00022 [+1]_72 chrII:10714394-10714474 0.00022 7_[+1]_65 chrII:11176598-11176678 0.00022 40_[+1]_32 chrI:5281800-5281880 0.0003 42_[+1]_30 chrI:14756434-14756514 0.0003 41_[+1]_31 chrIII:4999032-4999112 0.0003 19_[+1]_53 chrV:13625760-13625840 0.0003 34_[+1]_38 chrV:2603175-2603255 0.0003 38_[+1]_34 chrIV:9336685-9336765 0.0003 51_[+1]_21 chrII:7879478-7879558 0.0003 72_[+1] chrIV:11592956-11593036 0.0003 47_[+1]_25 chrIV:4712570-4712650 0.0003 61_[+1]_11 chrI:11222136-11222216 0.0003 50_[+1]_22 chrI:9080110-9080190 0.0003 28_[+1]_44 chrII:2919218-2919298 0.0003 43_[+1]_29 chrIV:4720698-4720778 0.00035 71_[+1]_1 chrIV:12051196-12051276 0.00037 48_[+1]_24 chrII:11175502-11175582 0.00039 68_[+1]_4 chrIII:3248812-3248892 0.00042 36_[+1]_36 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGGCCKAG MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF YGGCCKAG width=8 seqs=97 chrX:7569805-7569885 ( 41) TGGCCTAG 1 chrIV:7816551-7816631 ( 39) TGGCCTAG 1 chrII:4993943-4994023 ( 59) TGGCCTAG 1 chrI:638321-638401 ( 64) TGGCCTAG 1 chrV:9536676-9536756 ( 43) TGGCCTAG 1 chrIII:10120218-10120298 ( 22) TGGCCTAG 1 chrIII:5864414-5864494 ( 33) TGGCCTAG 1 chrII:9319561-9319641 ( 15) TGGCCTAG 1 chrII:14754358-14754438 ( 33) TGGCCTAG 1 chrIV:9797504-9797584 ( 32) TGGCCTAG 1 chrIII:13439561-13439641 ( 25) TGGCCTAG 1 chrIII:4187030-4187110 ( 18) TGGCCTAG 1 chrII:14563960-14564040 ( 7) TGGCCTAG 1 chrX:5205704-5205784 ( 41) TGGCCTAG 1 chrX:4254989-4255069 ( 38) TGGCCTAG 1 chrII:11578500-11578580 ( 30) TGGCCTAG 1 chrIII:8683821-8683901 ( 40) TGGCCTAG 1 chrIII:5803099-5803179 ( 29) TGGCCTAG 1 chrI:8255176-8255256 ( 31) TGGCCTAG 1 chrII:6950753-6950833 ( 29) TGGCCTAG 1 chrI:5118929-5119009 ( 2) TGGCCTAG 1 chrI:636772-636852 ( 33) TGGCCTAG 1 chrIII:5959181-5959261 ( 41) TGGCCTAG 1 chrX:16376139-16376219 ( 32) TGGCCTAG 1 chrIV:13289519-13289599 ( 14) TGGCCTAG 1 chrII:11464073-11464153 ( 29) TGGCCTAG 1 chrIII:6367870-6367950 ( 9) TGGCCTAG 1 chrV:10031929-10032009 ( 30) TGGCCTAG 1 chrV:15585903-15585983 ( 24) TGGCCTAG 1 chrI:10192899-10192979 ( 41) TGGCCTAG 1 chrIII:12673519-12673599 ( 47) TGGCCGAG 1 chrIII:5233313-5233393 ( 15) TGGCCGAG 1 chrX:2488535-2488615 ( 25) TGGCCGAG 1 chrX:3379239-3379319 ( 55) TGGCCGAG 1 chrII:14857078-14857158 ( 16) TGGCCGAG 1 chrIII:8158559-8158639 ( 31) TGGCCGAG 1 chrII:1123354-1123434 ( 13) TGGCCGAG 1 chrV:12952453-12952533 ( 22) TGGCCGAG 1 chrV:10441252-10441332 ( 35) CGGCCTAG 1 chrIV:4171902-4171982 ( 35) CGGCCTAG 1 chrIII:1540262-1540342 ( 28) CGGCCTAG 1 chrII:7397619-7397699 ( 39) CGGCCTAG 1 chrV:20090860-20090940 ( 19) CGGCCTAG 1 chrI:3817865-3817945 ( 37) CGGCCTAG 1 chrIII:9798662-9798742 ( 29) CGGCCTAG 1 chrV:13409228-13409308 ( 30) CGGCCGAG 1 chrX:13584990-13585070 ( 36) CGGCCGAG 1 chrII:147646-147726 ( 23) CGGCCGAG 1 chrIV:6369646-6369726 ( 35) CGGCCGAG 1 chrIV:1347137-1347217 ( 15) CGGCCGAG 1 chrIII:5594513-5594593 ( 37) TGGCCTTG 1 chrIV:13783701-13783781 ( 14) TGGCCTTG 1 chrV:16022769-16022849 ( 34) TGGCCGCG 1 chrX:7798514-7798594 ( 9) TGGCCGTG 1 chrIII:5047394-5047474 ( 55) TGGCCGTG 1 chrIII:3855021-3855101 ( 70) TGGCCGCG 1 chrIV:15528994-15529074 ( 61) TGGCCGCG 1 chrI:13835185-13835265 ( 24) TGGCCGCG 1 chrII:11860906-11860986 ( 17) TGGCCGCG 1 chrIV:10242908-10242988 ( 24) TGGCCGCG 1 chrIV:10197478-10197558 ( 28) TGGCCGTG 1 chrIII:8967798-8967878 ( 22) TGGCCGCG 1 chrX:11689228-11689308 ( 33) TGGCCGTG 1 chrII:5715895-5715975 ( 51) CGGCCAAG 1 chrV:13591667-13591747 ( 52) CGGCCAAG 1 chrII:12914855-12914935 ( 46) CGGCCGTG 1 chrIII:5190352-5190432 ( 42) CGGCCGTG 1 chrII:7615571-7615651 ( 71) CGGCCGCG 1 chrIV:257289-257369 ( 20) CGGCCGTG 1 chrX:4853178-4853258 ( 22) CGGCCGCG 1 chrIV:8019930-8020010 ( 11) CGGCCGCG 1 chrIV:12278674-12278754 ( 39) CGGCCGTG 1 chrII:6356145-6356225 ( 49) CGGCCGTG 1 chrIII:4343276-4343356 ( 40) TGGACTAG 1 chrII:7537769-7537849 ( 32) TGGACTAG 1 chrIII:8829383-8829463 ( 29) TGGACTAG 1 chrII:11106470-11106550 ( 39) TGGACTAG 1 chrIII:11286241-11286321 ( 15) TGGACGAG 1 chrIV:2896125-2896205 ( 1) TGGACGAG 1 chrII:10714394-10714474 ( 8) TGGACGAG 1 chrII:11176598-11176678 ( 41) TGGACGAG 1 chrI:5281800-5281880 ( 43) CGGCCACG 1 chrI:14756434-14756514 ( 42) CGGCCATG 1 chrIII:4999032-4999112 ( 20) CGGCCACG 1 chrV:13625760-13625840 ( 35) CGGCCATG 1 chrV:2603175-2603255 ( 39) CGGCCATG 1 chrIV:9336685-9336765 ( 52) CGGCCACG 1 chrII:7879478-7879558 ( 73) CGGCCATG 1 chrIV:11592956-11593036 ( 48) CGGCCATG 1 chrIV:4712570-4712650 ( 62) CGGCCACG 1 chrI:11222136-11222216 ( 51) CGGCCACG 1 chrI:9080110-9080190 ( 29) CGGCCACG 1 chrII:2919218-2919298 ( 44) CGGCCACG 1 chrIV:4720698-4720778 ( 72) TGGACTTG 1 chrIV:12051196-12051276 ( 49) TGGACGTG 1 chrII:11175502-11175582 ( 69) CGGACAAG 1 chrIII:3248812-3248892 ( 37) CGGACTCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGGCCKAG MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.66019 E= 9.1e-075 -1324 62 -1324 131 -1324 -1324 203 -1324 -1324 -1324 203 -1324 -107 186 -1324 -1324 -1324 205 -1324 -1324 -75 -1324 64 87 128 -38 -1324 -45 -1324 -1324 203 -1324 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGGCCKAG MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 97 E= 9.1e-075 0.000000 0.371134 0.000000 0.628866 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.123711 0.876289 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.154639 0.000000 0.381443 0.463918 0.628866 0.185567 0.000000 0.185567 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGGCCKAG MEME-1 regular expression -------------------------------------------------------------------------------- [TC]GGCC[TG]AG -------------------------------------------------------------------------------- Time 4.87 secs. ******************************************************************************** ******************************************************************************** MOTIF CTMGGCCA MEME-2 width = 8 sites = 61 llr = 500 E-value = 1.2e-025 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTMGGCCA MEME-2 Description -------------------------------------------------------------------------------- Simplified A :24::::7 pos.-specific C 9:6::aa: probability G :::a8::2 matrix T 18::2::: bits 2.1 * * 1.8 * ** 1.6 * ** 1.4 * * ** Relative 1.2 * **** Entropy 1.0 ******** (11.8 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CTCGGCCA consensus A T G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTMGGCCA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIII:12673519-12673599 62 1.33e-05 GAGACCCCGA CTCGGCCA GGCAAGtttt chrX:14127476-14127556 43 1.33e-05 CAACCTCCTC CTCGGCCA CCGCGCAACG chrIV:16422325-16422405 19 1.33e-05 AATAGAAATC CTCGGCCA CCGGTCCCCC chrV:2122660-2122740 10 1.33e-05 AAGTAAAAA CTCGGCCA CCGATTTTTT chrIV:13783701-13783781 34 1.33e-05 CGAAAAACTT CTCGGCCA TGAACATGTG chrII:14857078-14857158 59 1.33e-05 TCGCACACTT CTCGGCCA ttttttctat chrII:1123354-1123434 52 1.33e-05 TGACTTTAGA CTCGGCCA CCACGATTTT chrV:20090860-20090940 44 1.33e-05 CAATTCTTTT CTCGGCCA TCTTCCTCCA chrII:11860906-11860986 31 1.33e-05 CGCGTGGTTG CTCGGCCA CCCGTTGTGT chrII:291304-291384 45 1.33e-05 CTGGAAAAAA CTCGGCCA CCGAATTTTC chrIV:8019930-8020010 28 1.33e-05 GCTGAGATTT CTCGGCCA CAGTATCGCA chrIV:4712570-4712650 52 1.33e-05 GGAGAAAATC CTCGGCCA CCCGGCCACG chrIII:8967798-8967878 51 1.33e-05 GGCTGGAGTT CTCGGCCA TAATGATATT chrV:16022769-16022849 65 2.76e-05 AGTGACGCCG CTAGGCCA TTTGGCGA chrI:8511415-8511495 42 2.76e-05 ACGGAGAAAG CTAGGCCA TAAGTGGGAT chrIII:5233313-5233393 36 2.76e-05 ACGGAGGTTT CTAGGCCA TCTTTTCTTG chrX:13584990-13585070 60 2.76e-05 CGCGCACCTG CTAGGCCA CGTTTTGTTT chrIV:9777713-9777793 17 2.76e-05 ATGGAGTTTT CTAGGCCA CATGAACACA chrIV:9797504-9797584 60 2.76e-05 AAGGAGACTT CTAGGCCA TATTTGATGA chrI:5118929-5119009 41 2.76e-05 CATCAGAAAA CTAGGCCA TTTTTTCACA chrV:156209-156289 40 2.76e-05 TTAAAGTTTC CTAGGCCA CGCGACCGTG chrII:9319561-9319641 44 4.02e-05 CAAGTTCATT CTCGGCCG CACCGGTTTT chrX:2572762-2572842 5 4.02e-05 TACC CTCGGCCG CCGCGCTGGT chrI:8759876-8759956 46 5.40e-05 TTTTCTAGGC CTCGTCCA CTTGTGTTGG chrX:8110066-8110146 27 5.40e-05 CGAGGCGTAT CTCGTCCA CCTGCTAGTG chrV:2603175-2603255 31 5.40e-05 CCCGCACTTC CTCGTCCA CGGCCATGCG chrIII:8268431-8268511 46 6.76e-05 TACATTAGGC CACGGCCA CCACTTTACA chrI:9955959-9956039 56 6.76e-05 AGACCTAGTC CACGGCCA TCCGGCCATC chrIII:11974605-11974685 26 8.12e-05 GTGGCGGCAG CTAGGCCG TGGTTGCACG chrII:4993943-4994023 51 9.60e-05 TTGGAAATTC CTAGTCCA TGGCCTAGAA chrI:636772-636852 51 9.60e-05 CGTTCCCCTC CTAGTCCA CGGCCGCGCA chrI:11222136-11222216 43 9.60e-05 TACACGAAAC CTAGTCCA CGGCCACGCG chrII:10926337-10926417 32 9.60e-05 ATGGCGCTTA CTAGTCCA CGGCACCGTG chrIV:5548989-5549069 53 1.25e-04 TTTGAAACAA TTCGGCCA TCAAAGTGTT chrI:13835185-13835265 44 1.25e-04 CGCCATTTTC CAAGGCCA CCGGGGCTTA chrII:11542529-11542609 40 1.25e-04 AGAGGTTTTT CAAGGCCA GTGGCCGGCA chrI:9286676-9286756 56 1.25e-04 CACTGTTCAG TTCGGCCA CAATTCGAGG chrI:2385106-2385186 27 1.38e-04 AGGAGGATTC CTCGTCCG TCGCTCGCGA chrII:5819830-5819910 68 1.38e-04 CTTCTGAAAA CTCGTCCG CGACA chrIII:4986946-4987026 46 1.38e-04 CCCGCAAAAC CTCGTCCG CGAGAGAAAA chrIII:4343276-4343356 31 1.51e-04 ACGAGGAGTA CACGGCCG ATGGACTAGG chrX:7569805-7569885 31 1.51e-04 GAGAGTACTT CACGGCCG CGTGGCCTAG chrII:7397619-7397699 29 1.51e-04 GAGAGGAGTA CACGGCCG CGCGGCCTAG chrIII:5803099-5803179 41 1.51e-04 GCCTAGTTTT CACGGCCG AGAAATGTCA chrIV:13289519-13289599 28 1.51e-04 CTAGAATCTG CACGGCCG CGCGCGCGTG chrV:10031929-10032009 20 1.51e-04 GAGTGGAGTA CACGGCCG TGTGGCCTAG chrI:10192899-10192979 33 1.51e-04 TCGTGTACGA CACGGCCG TGGCCTAGAA chrIII:11286241-11286321 35 1.77e-04 TCCGGAGCCC CGCGGCCA CGGCCCCCAC chrIII:4187030-4187110 44 1.77e-04 TGGCATCGAC CGCGGCCA CGTCAACTTT chrII:14563960-14564040 28 1.77e-04 GCGCAGCTCT CGCGGCCA CGTTAGCTTT chrII:11176598-11176678 72 1.77e-04 CCAGACCTTT CACGTCCA T chrI:2830391-2830471 36 1.93e-04 TCCGCGGAAG TTAGGCCA TGGAGAGGGG chrIII:6625450-6625530 66 1.93e-04 AAGGGTAGTT TTAGGCCA TGAGCAG chrX:1853734-1853814 33 1.93e-04 CAATGAGATC TTAGGCCA CCACATGTGT chrI:3817865-3817945 57 1.93e-04 TGCGGTGTTT TTAGGCCA TCATTTTCGC chrII:11464073-11464153 43 1.93e-04 CTAGAACATG TTAGGCCA TGGCCTAGAA chrIV:11592956-11593036 40 2.07e-04 CTAGAAAATG CTAGTCCG CGGCCATGAC chrX:2857582-2857662 45 2.07e-04 TATGGGTTTT CTAGTCCG CCTGTCCTCA chrI:7159328-7159408 53 2.92e-04 GTGTACTCCA CTCGGACA ACATTGTTTC chrII:12914855-12914935 61 2.92e-04 GTGTACTCCA CTCGGACA ATCATTTAAT chrIV:12278674-12278754 18 3.18e-04 TTAAAAGAGT CTCGGCCC GAACAACTTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTMGGCCA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:12673519-12673599 1.3e-05 61_[+2]_11 chrX:14127476-14127556 1.3e-05 42_[+2]_30 chrIV:16422325-16422405 1.3e-05 18_[+2]_54 chrV:2122660-2122740 1.3e-05 9_[+2]_63 chrIV:13783701-13783781 1.3e-05 33_[+2]_39 chrII:14857078-14857158 1.3e-05 58_[+2]_14 chrII:1123354-1123434 1.3e-05 51_[+2]_21 chrV:20090860-20090940 1.3e-05 43_[+2]_29 chrII:11860906-11860986 1.3e-05 30_[+2]_42 chrII:291304-291384 1.3e-05 44_[+2]_28 chrIV:8019930-8020010 1.3e-05 27_[+2]_45 chrIV:4712570-4712650 1.3e-05 51_[+2]_21 chrIII:8967798-8967878 1.3e-05 50_[+2]_22 chrV:16022769-16022849 2.8e-05 64_[+2]_8 chrI:8511415-8511495 2.8e-05 41_[+2]_31 chrIII:5233313-5233393 2.8e-05 35_[+2]_37 chrX:13584990-13585070 2.8e-05 59_[+2]_13 chrIV:9777713-9777793 2.8e-05 16_[+2]_56 chrIV:9797504-9797584 2.8e-05 59_[+2]_13 chrI:5118929-5119009 2.8e-05 40_[+2]_32 chrV:156209-156289 2.8e-05 39_[+2]_33 chrII:9319561-9319641 4e-05 43_[+2]_29 chrX:2572762-2572842 4e-05 4_[+2]_68 chrI:8759876-8759956 5.4e-05 45_[+2]_27 chrX:8110066-8110146 5.4e-05 26_[+2]_46 chrV:2603175-2603255 5.4e-05 30_[+2]_42 chrIII:8268431-8268511 6.8e-05 45_[+2]_27 chrI:9955959-9956039 6.8e-05 55_[+2]_17 chrIII:11974605-11974685 8.1e-05 25_[+2]_47 chrII:4993943-4994023 9.6e-05 50_[+2]_22 chrI:636772-636852 9.6e-05 50_[+2]_22 chrI:11222136-11222216 9.6e-05 42_[+2]_30 chrII:10926337-10926417 9.6e-05 31_[+2]_41 chrIV:5548989-5549069 0.00012 52_[+2]_20 chrI:13835185-13835265 0.00012 43_[+2]_29 chrII:11542529-11542609 0.00012 39_[+2]_33 chrI:9286676-9286756 0.00012 55_[+2]_17 chrI:2385106-2385186 0.00014 26_[+2]_46 chrII:5819830-5819910 0.00014 67_[+2]_5 chrIII:4986946-4987026 0.00014 45_[+2]_27 chrIII:4343276-4343356 0.00015 30_[+2]_42 chrX:7569805-7569885 0.00015 30_[+2]_42 chrII:7397619-7397699 0.00015 28_[+2]_44 chrIII:5803099-5803179 0.00015 40_[+2]_32 chrIV:13289519-13289599 0.00015 27_[+2]_45 chrV:10031929-10032009 0.00015 19_[+2]_53 chrI:10192899-10192979 0.00015 32_[+2]_40 chrIII:11286241-11286321 0.00018 34_[+2]_38 chrIII:4187030-4187110 0.00018 43_[+2]_29 chrII:14563960-14564040 0.00018 27_[+2]_45 chrII:11176598-11176678 0.00018 71_[+2]_1 chrI:2830391-2830471 0.00019 35_[+2]_37 chrIII:6625450-6625530 0.00019 65_[+2]_7 chrX:1853734-1853814 0.00019 32_[+2]_40 chrI:3817865-3817945 0.00019 56_[+2]_16 chrII:11464073-11464153 0.00019 42_[+2]_30 chrIV:11592956-11593036 0.00021 39_[+2]_33 chrX:2857582-2857662 0.00021 44_[+2]_28 chrI:7159328-7159408 0.00029 52_[+2]_20 chrII:12914855-12914935 0.00029 60_[+2]_12 chrIV:12278674-12278754 0.00032 17_[+2]_55 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTMGGCCA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTMGGCCA width=8 seqs=61 chrIII:12673519-12673599 ( 62) CTCGGCCA 1 chrX:14127476-14127556 ( 43) CTCGGCCA 1 chrIV:16422325-16422405 ( 19) CTCGGCCA 1 chrV:2122660-2122740 ( 10) CTCGGCCA 1 chrIV:13783701-13783781 ( 34) CTCGGCCA 1 chrII:14857078-14857158 ( 59) CTCGGCCA 1 chrII:1123354-1123434 ( 52) CTCGGCCA 1 chrV:20090860-20090940 ( 44) CTCGGCCA 1 chrII:11860906-11860986 ( 31) CTCGGCCA 1 chrII:291304-291384 ( 45) CTCGGCCA 1 chrIV:8019930-8020010 ( 28) CTCGGCCA 1 chrIV:4712570-4712650 ( 52) CTCGGCCA 1 chrIII:8967798-8967878 ( 51) CTCGGCCA 1 chrV:16022769-16022849 ( 65) CTAGGCCA 1 chrI:8511415-8511495 ( 42) CTAGGCCA 1 chrIII:5233313-5233393 ( 36) CTAGGCCA 1 chrX:13584990-13585070 ( 60) CTAGGCCA 1 chrIV:9777713-9777793 ( 17) CTAGGCCA 1 chrIV:9797504-9797584 ( 60) CTAGGCCA 1 chrI:5118929-5119009 ( 41) CTAGGCCA 1 chrV:156209-156289 ( 40) CTAGGCCA 1 chrII:9319561-9319641 ( 44) CTCGGCCG 1 chrX:2572762-2572842 ( 5) CTCGGCCG 1 chrI:8759876-8759956 ( 46) CTCGTCCA 1 chrX:8110066-8110146 ( 27) CTCGTCCA 1 chrV:2603175-2603255 ( 31) CTCGTCCA 1 chrIII:8268431-8268511 ( 46) CACGGCCA 1 chrI:9955959-9956039 ( 56) CACGGCCA 1 chrIII:11974605-11974685 ( 26) CTAGGCCG 1 chrII:4993943-4994023 ( 51) CTAGTCCA 1 chrI:636772-636852 ( 51) CTAGTCCA 1 chrI:11222136-11222216 ( 43) CTAGTCCA 1 chrII:10926337-10926417 ( 32) CTAGTCCA 1 chrIV:5548989-5549069 ( 53) TTCGGCCA 1 chrI:13835185-13835265 ( 44) CAAGGCCA 1 chrII:11542529-11542609 ( 40) CAAGGCCA 1 chrI:9286676-9286756 ( 56) TTCGGCCA 1 chrI:2385106-2385186 ( 27) CTCGTCCG 1 chrII:5819830-5819910 ( 68) CTCGTCCG 1 chrIII:4986946-4987026 ( 46) CTCGTCCG 1 chrIII:4343276-4343356 ( 31) CACGGCCG 1 chrX:7569805-7569885 ( 31) CACGGCCG 1 chrII:7397619-7397699 ( 29) CACGGCCG 1 chrIII:5803099-5803179 ( 41) CACGGCCG 1 chrIV:13289519-13289599 ( 28) CACGGCCG 1 chrV:10031929-10032009 ( 20) CACGGCCG 1 chrI:10192899-10192979 ( 33) CACGGCCG 1 chrIII:11286241-11286321 ( 35) CGCGGCCA 1 chrIII:4187030-4187110 ( 44) CGCGGCCA 1 chrII:14563960-14564040 ( 28) CGCGGCCA 1 chrII:11176598-11176678 ( 72) CACGTCCA 1 chrI:2830391-2830471 ( 36) TTAGGCCA 1 chrIII:6625450-6625530 ( 66) TTAGGCCA 1 chrX:1853734-1853814 ( 33) TTAGGCCA 1 chrI:3817865-3817945 ( 57) TTAGGCCA 1 chrII:11464073-11464153 ( 43) TTAGGCCA 1 chrIV:11592956-11593036 ( 40) CTAGTCCG 1 chrX:2857582-2857662 ( 45) CTAGTCCG 1 chrI:7159328-7159408 ( 53) CTCGGACA 1 chrII:12914855-12914935 ( 61) CTCGGACA 1 chrIV:12278674-12278754 ( 18) CTCGGCCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTMGGCCA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.9123 E= 1.2e-025 -1257 188 -1257 -115 -40 -1257 -232 157 47 141 -1257 -1257 -1257 -1257 203 -1257 -1257 -1257 168 -25 -298 201 -1257 -1257 -1257 205 -1257 -1257 151 -387 0 -1257 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTMGGCCA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 61 E= 1.2e-025 0.000000 0.885246 0.000000 0.114754 0.196721 0.000000 0.049180 0.754098 0.360656 0.639344 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.786885 0.213115 0.032787 0.967213 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.737705 0.016393 0.245902 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTMGGCCA MEME-2 regular expression -------------------------------------------------------------------------------- CT[CA]G[GT]CC[AG] -------------------------------------------------------------------------------- Time 8.39 secs. ******************************************************************************** ******************************************************************************** MOTIF GCAAACAC MEME-3 width = 8 sites = 24 llr = 240 E-value = 2.0e-012 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCAAACAC MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::aa9:9: pos.-specific C :a::1a:a probability G a:::::1: matrix T :::::::: bits 2.1 * * * 1.8 *** * * 1.6 **** * * 1.4 ******** Relative 1.2 ******** Entropy 1.0 ******** (14.4 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GCAAACAC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAAACAC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrII:14474888-14474968 33 1.54e-05 ACCGACGGCG GCAAACAC TTCGGATAGG chrII:2787280-2787360 65 1.54e-05 CCCCGGGTAT GCAAACAC CGTGCACT chrIV:2846405-2846485 45 1.54e-05 CTTCGAGTCC GCAAACAC TTTGAGAGAC chrI:8434360-8434440 18 1.54e-05 ATCATGTTCC GCAAACAC TGTCTTTTGT chrIII:5906208-5906288 45 1.54e-05 GCCGATGTAC GCAAACAC CAACACGCGA chrII:5429872-5429952 16 1.54e-05 TCGAAAGTAC GCAAACAC CGCGCTGCGG chrII:14142212-14142292 9 1.54e-05 CCGTGTCT GCAAACAC CGTCACGTCA chrIV:3136654-3136734 27 1.54e-05 GCAAGACTCC GCAAACAC GGGCATACAC chrIII:11915828-11915908 34 1.54e-05 TGCCGAGTAC GCAAACAC CGTCACGTCA chrI:7926436-7926516 25 1.54e-05 TAGACCAAGT GCAAACAC TTTCACGTCA chrIII:9331230-9331310 39 1.54e-05 TGTAATGTCC GCAAACAC CACCACGTCG chrX:8109670-8109750 25 1.54e-05 CACAAAATCT GCAAACAC AATCACGCAC chrI:10173209-10173289 17 1.54e-05 AGAGACGGCG GCAAACAC AAGTGTGCAT chrI:8369790-8369870 18 1.54e-05 TGTTTTGTCC GCAAACAC GTTGCGGAGC chrII:6197027-6197107 33 1.54e-05 TCGAAAGTCT GCAAACAC AGCGACGTCA chrIII:6379270-6379350 36 1.54e-05 GACAAAGTGT GCAAACAC CGCCACGCGA chrIV:9858261-9858341 35 4.44e-05 GAGGGTGCCA GCAAACGC GCCCCTTCGT chrIII:10895971-10896051 32 4.44e-05 ATTTCCCGCT GCAAACGC GCTCGCTGAC chrII:11175502-11175582 28 4.44e-05 AAAATTTGAT GCAAACGC GCCCCAGTGA chrII:7123204-7123284 10 4.44e-05 GCCTATTTC GCAACCAC CGCATGCTTT chrX:10668030-10668110 43 4.44e-05 GTCGTTTTGC GCAACCAC CGTTCCTCTA chrI:4959185-4959265 65 4.44e-05 GGACCTTTTC GCAACCAC CGCACACT chrIV:8540428-8540508 43 5.87e-05 TTCTACACCA GCACACAC TATTATACAG chrIV:10242908-10242988 14 7.53e-05 GCGGGGCCTA GAAAACAC AATGGCCGCG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAAACAC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:14474888-14474968 1.5e-05 32_[+3]_40 chrII:2787280-2787360 1.5e-05 64_[+3]_8 chrIV:2846405-2846485 1.5e-05 44_[+3]_28 chrI:8434360-8434440 1.5e-05 17_[+3]_55 chrIII:5906208-5906288 1.5e-05 44_[+3]_28 chrII:5429872-5429952 1.5e-05 15_[+3]_57 chrII:14142212-14142292 1.5e-05 8_[+3]_64 chrIV:3136654-3136734 1.5e-05 26_[+3]_46 chrIII:11915828-11915908 1.5e-05 33_[+3]_39 chrI:7926436-7926516 1.5e-05 24_[+3]_48 chrIII:9331230-9331310 1.5e-05 38_[+3]_34 chrX:8109670-8109750 1.5e-05 24_[+3]_48 chrI:10173209-10173289 1.5e-05 16_[+3]_56 chrI:8369790-8369870 1.5e-05 17_[+3]_55 chrII:6197027-6197107 1.5e-05 32_[+3]_40 chrIII:6379270-6379350 1.5e-05 35_[+3]_37 chrIV:9858261-9858341 4.4e-05 34_[+3]_38 chrIII:10895971-10896051 4.4e-05 31_[+3]_41 chrII:11175502-11175582 4.4e-05 27_[+3]_45 chrII:7123204-7123284 4.4e-05 9_[+3]_63 chrX:10668030-10668110 4.4e-05 42_[+3]_30 chrI:4959185-4959265 4.4e-05 64_[+3]_8 chrIV:8540428-8540508 5.9e-05 42_[+3]_30 chrIV:10242908-10242988 7.5e-05 13_[+3]_59 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAAACAC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCAAACAC width=8 seqs=24 chrII:14474888-14474968 ( 33) GCAAACAC 1 chrII:2787280-2787360 ( 65) GCAAACAC 1 chrIV:2846405-2846485 ( 45) GCAAACAC 1 chrI:8434360-8434440 ( 18) GCAAACAC 1 chrIII:5906208-5906288 ( 45) GCAAACAC 1 chrII:5429872-5429952 ( 16) GCAAACAC 1 chrII:14142212-14142292 ( 9) GCAAACAC 1 chrIV:3136654-3136734 ( 27) GCAAACAC 1 chrIII:11915828-11915908 ( 34) GCAAACAC 1 chrI:7926436-7926516 ( 25) GCAAACAC 1 chrIII:9331230-9331310 ( 39) GCAAACAC 1 chrX:8109670-8109750 ( 25) GCAAACAC 1 chrI:10173209-10173289 ( 17) GCAAACAC 1 chrI:8369790-8369870 ( 18) GCAAACAC 1 chrII:6197027-6197107 ( 33) GCAAACAC 1 chrIII:6379270-6379350 ( 36) GCAAACAC 1 chrIV:9858261-9858341 ( 35) GCAAACGC 1 chrIII:10895971-10896051 ( 32) GCAAACGC 1 chrII:11175502-11175582 ( 28) GCAAACGC 1 chrII:7123204-7123284 ( 10) GCAACCAC 1 chrX:10668030-10668110 ( 43) GCAACCAC 1 chrI:4959185-4959265 ( 65) GCAACCAC 1 chrIV:8540428-8540508 ( 43) GCACACAC 1 chrIV:10242908-10242988 ( 14) GAAAACAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAAACAC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.0167 E= 2.0e-012 -1123 -1123 203 -1123 -264 199 -1123 -1123 195 -1123 -1123 -1123 188 -253 -1123 -1123 175 -95 -1123 -1123 -1123 205 -1123 -1123 175 -1123 -97 -1123 -1123 205 -1123 -1123 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAAACAC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 24 E= 2.0e-012 0.000000 0.000000 1.000000 0.000000 0.041667 0.958333 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.958333 0.041667 0.000000 0.000000 0.875000 0.125000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.875000 0.000000 0.125000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAAACAC MEME-3 regular expression -------------------------------------------------------------------------------- GCAAACAC -------------------------------------------------------------------------------- Time 11.83 secs. ******************************************************************************** ******************************************************************************** MOTIF TTYRAAWW MEME-4 width = 8 sites = 72 llr = 525 E-value = 3.8e-010 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTYRAAWW MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::48a54 pos.-specific C ::5:2:1: probability G :1:6:::: matrix T a95:::46 bits 2.1 * 1.8 * * 1.6 ** * 1.4 ** * Relative 1.2 ** ** Entropy 1.0 ****** (10.5 bits) 0.8 ****** * 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TTTGAAAT consensus CA TA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTYRAAWW MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIII:4343276-4343356 3 1.77e-05 AC TTTGAAAT CGGTTTGTTC chrII:7537769-7537849 16 1.77e-05 GAAAATTCCG TTTGAAAT ATGGCCGCTG chrI:8369790-8369870 43 1.77e-05 AGCCAAGCTC TTTGAAAT CGGATTTTCA chrI:2385106-2385186 70 1.77e-05 GAAAATAGCG TTTGAAAT AAG chrV:13625760-13625840 24 3.45e-05 TTCCTTTCTT TTCGAAAT CGCCGGCCAT chrIV:9777713-9777793 60 3.45e-05 CGGCGCGAAT TTCGAAAT AGAACAACGA chrII:14401275-14401355 70 3.45e-05 ATTTGGATAC TTCGAAAT TTA chrI:636772-636852 9 3.45e-05 aactaaaa ttcgaaat tcgaaaAACA chrI:2830391-2830471 68 5.19e-05 ACGCGGGAAA TTTGAATT CGATA chrII:12914855-12914935 10 5.19e-05 TCCATTTAA TTTGAATT TCGCGCGGAA chrIII:5989514-5989594 26 5.19e-05 CCTTGCCTCG TTTGAATT CAACGTTTTC chrIII:5190352-5190432 5 5.19e-05 TTTA TTTGAATT TCGCGCGAAA chrII:10714394-10714474 66 5.19e-05 AGCGCGGGGA TTTGAATT TAGTTTT chrII:1123354-1123434 69 5.19e-05 ACCACGATTT TTTGAATT AATT chrIV:1347137-1347217 73 5.19e-05 ATATTTGTTT TTTGAATT chrI:8434360-8434440 59 6.84e-05 TTTACGCGCA TTCGAATT TCAGTGTTCG chrII:14401655-14401735 54 6.84e-05 ATTCCTTCCA TTCGAATT CAACGAAGAA chrII:11916333-11916413 1 8.65e-05 . TTTGAAAA GTTTGATGTG chrII:7699173-7699253 67 1.22e-04 CGTACTCCTA TTCGAAAA TGTTTT chrIV:9858261-9858341 65 1.22e-04 ACAGACAAAA TTCGAAAA AATTTGCA chrI:10718342-10718422 17 1.22e-04 tcgtccctcg ttcgaaaa aagtcgcagt chrIII:4922185-4922265 48 1.22e-04 AAAATACAAT TTTAAAAT CGTGCGGCAG chrII:8525493-8525573 15 1.22e-04 AAATAAGATG TTCGAAAA TGTGCAACTT chrIV:9797504-9797584 7 1.22e-04 AATAAA TTTAAAAT TGTTCGAACA chrIV:17118739-17118819 11 1.22e-04 CCCTGCTAAA TTCGAAAA CGCAACGAGG chrIII:8683821-8683901 73 1.22e-04 AAAATAACCG TTCGAAAA chrII:10247714-10247794 16 1.22e-04 aaTGTGACTG TTCGAAAA GAAAAACAAA chrIII:8967798-8967878 11 1.22e-04 AAAAGTCGAA TTCGAAAA TGGTGGCCGC chrV:9536676-9536756 6 1.40e-04 CAAAC TTCAAAAT AGGCAGTTGG chrIV:6606757-6606837 10 1.58e-04 GTTTGTGTG TTTGAATA CATTCCCAGT chrIV:16422325-16422405 66 1.58e-04 TGCGCACACT TTTGAATA GGAGAAG chrI:14756434-14756514 68 1.93e-04 TTGCGGGAAT TTTAAATT GGAGT chrII:6950753-6950833 8 1.93e-04 GGATATT TTTAAATT TCCGCTTGAA chrV:10031929-10032009 56 1.93e-04 TGCGCGGTAA TTTAAATT ATAATTATCT chrX:8104065-8104145 24 2.10e-04 CCCTTCGCTG TTCAAATT GCCTTGCGTT chrIII:11915828-11915908 71 2.10e-04 GTCTTGCGAA TTCAAATT AA chrIV:7816551-7816631 65 2.10e-04 TGCGCGGAAG TTCAAATT TTAATTAG chrV:13409228-13409308 65 2.10e-04 ACGCGCGAAA TTCAAATT AGATAATT chrX:13584990-13585070 16 2.10e-04 CTTTTTCTCA TTCAAATT TCGCGCCACA chrV:2603175-2603255 62 2.10e-04 TGCGCGGGCA TTCAAATT GGGAAAATCG chrIV:6369646-6369726 72 2.10e-04 TGGCGCGAAA TTCAAATT A chrI:5281800-5281880 4 2.30e-04 CTC TTTAAAAA TTTCAGCGTT chrX:2694871-2694951 11 2.30e-04 TCTGAAATTA TTTAAAAA GACGTCGCTG chrX:2572762-2572842 73 2.30e-04 TGTGGCACCC TTTAAAAA chrX:14525528-14525608 20 2.30e-04 TCAAATCAAC TTTAAAAA AAAACTGCTG chrX:8109670-8109750 63 2.48e-04 GAATATACAT TTCAAAAA GAAGGGCGAA chrII:6356145-6356225 14 2.48e-04 CGGACGAGTT TTCAAAAA CGCTCTATTG chrIII:10895971-10896051 1 2.66e-04 . TTTAAATA TATTTAATCT chrIV:12123034-12123114 6 3.01e-04 TTTTA TTCAAATA AGAGGTAACG chrI:14101189-14101269 29 3.01e-04 GCGTACCCTA TTTGCAAT CCTGGCACGC chrIII:4187030-4187110 27 3.01e-04 ATGGCCTAGT TTTGCAAT GGCATCGACC chrI:3829424-3829504 42 3.16e-04 TCAAGACACT TTCGCAAT AAAGCGTGTT chrII:11830789-11830869 20 3.32e-04 ATAGAGCAAC TTTGCATT TTACACGAGA chrIII:4878440-4878520 43 3.32e-04 GCGGAGCGTG TTTGCATT ACTTTCAAAA chrV:12743935-12744015 44 3.32e-04 GCCATGCATG TTTGCATT TTATGAGTTA chrI:6562518-6562598 38 3.64e-04 AGTGCGCCCC TTTGAACT AGTGTTCTGT chrIII:13423592-13423672 67 3.64e-04 ACGGCGCCAG TTTGAACT TTGAAA chrIII:9776093-9776173 38 3.64e-04 GTGGCGGCAA TTTGAACT TTTATCGAGA chrII:11175502-11175582 12 3.97e-04 TGGCTGTCTC TTTGCAAA AATTTGATGC chrIII:9798662-9798742 72 4.30e-04 GTGGACAACT TTCGCAAA C chrII:5819830-5819910 37 4.47e-04 GCCGAAGTTT TTCACAAT TATCAATAGA chrI:5118929-5119009 53 4.47e-04 AGGCCATTTT TTCACAAT TGTCAATTTC chrI:14496563-14496643 51 4.63e-04 ACGGGGCGCA TTTGCATA CACTAATATT chrV:156209-156289 6 5.13e-04 TATTA TTTGAACA CCCGCGCGCA chrIV:1657221-1657301 12 5.97e-04 TTTCGCGCTG TTTACAAA TGGAGAGACA chrIII:7359194-7359274 1 6.31e-04 . TGTGAAAT CGCGCGGAGG chrII:11578500-11578580 5 6.47e-04 CGAT TGCGAAAT CAAGTCATAA chrII:13083904-13083984 4 6.81e-04 AAA TTTGAAAC AAGCGCCAAA chrI:2620455-2620535 28 7.81e-04 AAACTGAGGT TTCAAACA AGCTGCAAGT chrV:15585903-15585983 37 8.65e-04 cctagaaagt tgcgaaaa ctagtcccgc chrX:1853734-1853814 48 9.47e-04 CCACCACATG TGTGAATA CCTCTGCGTC chrV:16022769-16022849 7 9.98e-04 CTCATA TTCAAAAC TCGCGCCGAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTYRAAWW MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:4343276-4343356 1.8e-05 2_[+4]_70 chrII:7537769-7537849 1.8e-05 15_[+4]_57 chrI:8369790-8369870 1.8e-05 42_[+4]_30 chrI:2385106-2385186 1.8e-05 69_[+4]_3 chrV:13625760-13625840 3.5e-05 23_[+4]_49 chrIV:9777713-9777793 3.5e-05 59_[+4]_13 chrII:14401275-14401355 3.5e-05 69_[+4]_3 chrI:636772-636852 3.5e-05 8_[+4]_64 chrI:2830391-2830471 5.2e-05 67_[+4]_5 chrII:12914855-12914935 5.2e-05 9_[+4]_63 chrIII:5989514-5989594 5.2e-05 25_[+4]_47 chrIII:5190352-5190432 5.2e-05 4_[+4]_68 chrII:10714394-10714474 5.2e-05 65_[+4]_7 chrII:1123354-1123434 5.2e-05 68_[+4]_4 chrIV:1347137-1347217 5.2e-05 72_[+4] chrI:8434360-8434440 6.8e-05 58_[+4]_14 chrII:14401655-14401735 6.8e-05 53_[+4]_19 chrII:11916333-11916413 8.6e-05 [+4]_72 chrII:7699173-7699253 0.00012 66_[+4]_6 chrIV:9858261-9858341 0.00012 64_[+4]_8 chrI:10718342-10718422 0.00012 16_[+4]_56 chrIII:4922185-4922265 0.00012 47_[+4]_25 chrII:8525493-8525573 0.00012 14_[+4]_58 chrIV:9797504-9797584 0.00012 6_[+4]_66 chrIV:17118739-17118819 0.00012 10_[+4]_62 chrIII:8683821-8683901 0.00012 72_[+4] chrII:10247714-10247794 0.00012 15_[+4]_57 chrIII:8967798-8967878 0.00012 10_[+4]_62 chrV:9536676-9536756 0.00014 5_[+4]_67 chrIV:6606757-6606837 0.00016 9_[+4]_63 chrIV:16422325-16422405 0.00016 65_[+4]_7 chrI:14756434-14756514 0.00019 67_[+4]_5 chrII:6950753-6950833 0.00019 7_[+4]_65 chrV:10031929-10032009 0.00019 55_[+4]_17 chrX:8104065-8104145 0.00021 23_[+4]_49 chrIII:11915828-11915908 0.00021 70_[+4]_2 chrIV:7816551-7816631 0.00021 64_[+4]_8 chrV:13409228-13409308 0.00021 64_[+4]_8 chrX:13584990-13585070 0.00021 15_[+4]_57 chrV:2603175-2603255 0.00021 61_[+4]_11 chrIV:6369646-6369726 0.00021 71_[+4]_1 chrI:5281800-5281880 0.00023 3_[+4]_69 chrX:2694871-2694951 0.00023 10_[+4]_62 chrX:2572762-2572842 0.00023 72_[+4] chrX:14525528-14525608 0.00023 19_[+4]_53 chrX:8109670-8109750 0.00025 62_[+4]_10 chrII:6356145-6356225 0.00025 13_[+4]_59 chrIII:10895971-10896051 0.00027 [+4]_72 chrIV:12123034-12123114 0.0003 5_[+4]_67 chrI:14101189-14101269 0.0003 28_[+4]_44 chrIII:4187030-4187110 0.0003 26_[+4]_46 chrI:3829424-3829504 0.00032 41_[+4]_31 chrII:11830789-11830869 0.00033 19_[+4]_53 chrIII:4878440-4878520 0.00033 42_[+4]_30 chrV:12743935-12744015 0.00033 43_[+4]_29 chrI:6562518-6562598 0.00036 37_[+4]_35 chrIII:13423592-13423672 0.00036 66_[+4]_6 chrIII:9776093-9776173 0.00036 37_[+4]_35 chrII:11175502-11175582 0.0004 11_[+4]_61 chrIII:9798662-9798742 0.00043 71_[+4]_1 chrII:5819830-5819910 0.00045 36_[+4]_36 chrI:5118929-5119009 0.00045 52_[+4]_20 chrI:14496563-14496643 0.00046 50_[+4]_22 chrV:156209-156289 0.00051 5_[+4]_67 chrIV:1657221-1657301 0.0006 11_[+4]_61 chrIII:7359194-7359274 0.00063 [+4]_72 chrII:11578500-11578580 0.00065 4_[+4]_68 chrII:13083904-13083984 0.00068 3_[+4]_69 chrI:2620455-2620535 0.00078 27_[+4]_45 chrV:15585903-15585983 0.00086 36_[+4]_36 chrX:1853734-1853814 0.00095 47_[+4]_25 chrV:16022769-16022849 0.001 6_[+4]_66 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTYRAAWW MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTYRAAWW width=8 seqs=72 chrIII:4343276-4343356 ( 3) TTTGAAAT 1 chrII:7537769-7537849 ( 16) TTTGAAAT 1 chrI:8369790-8369870 ( 43) TTTGAAAT 1 chrI:2385106-2385186 ( 70) TTTGAAAT 1 chrV:13625760-13625840 ( 24) TTCGAAAT 1 chrIV:9777713-9777793 ( 60) TTCGAAAT 1 chrII:14401275-14401355 ( 70) TTCGAAAT 1 chrI:636772-636852 ( 9) TTCGAAAT 1 chrI:2830391-2830471 ( 68) TTTGAATT 1 chrII:12914855-12914935 ( 10) TTTGAATT 1 chrIII:5989514-5989594 ( 26) TTTGAATT 1 chrIII:5190352-5190432 ( 5) TTTGAATT 1 chrII:10714394-10714474 ( 66) TTTGAATT 1 chrII:1123354-1123434 ( 69) TTTGAATT 1 chrIV:1347137-1347217 ( 73) TTTGAATT 1 chrI:8434360-8434440 ( 59) TTCGAATT 1 chrII:14401655-14401735 ( 54) TTCGAATT 1 chrII:11916333-11916413 ( 1) TTTGAAAA 1 chrII:7699173-7699253 ( 67) TTCGAAAA 1 chrIV:9858261-9858341 ( 65) TTCGAAAA 1 chrI:10718342-10718422 ( 17) TTCGAAAA 1 chrIII:4922185-4922265 ( 48) TTTAAAAT 1 chrII:8525493-8525573 ( 15) TTCGAAAA 1 chrIV:9797504-9797584 ( 7) TTTAAAAT 1 chrIV:17118739-17118819 ( 11) TTCGAAAA 1 chrIII:8683821-8683901 ( 73) TTCGAAAA 1 chrII:10247714-10247794 ( 16) TTCGAAAA 1 chrIII:8967798-8967878 ( 11) TTCGAAAA 1 chrV:9536676-9536756 ( 6) TTCAAAAT 1 chrIV:6606757-6606837 ( 10) TTTGAATA 1 chrIV:16422325-16422405 ( 66) TTTGAATA 1 chrI:14756434-14756514 ( 68) TTTAAATT 1 chrII:6950753-6950833 ( 8) TTTAAATT 1 chrV:10031929-10032009 ( 56) TTTAAATT 1 chrX:8104065-8104145 ( 24) TTCAAATT 1 chrIII:11915828-11915908 ( 71) TTCAAATT 1 chrIV:7816551-7816631 ( 65) TTCAAATT 1 chrV:13409228-13409308 ( 65) TTCAAATT 1 chrX:13584990-13585070 ( 16) TTCAAATT 1 chrV:2603175-2603255 ( 62) TTCAAATT 1 chrIV:6369646-6369726 ( 72) TTCAAATT 1 chrI:5281800-5281880 ( 4) TTTAAAAA 1 chrX:2694871-2694951 ( 11) TTTAAAAA 1 chrX:2572762-2572842 ( 73) TTTAAAAA 1 chrX:14525528-14525608 ( 20) TTTAAAAA 1 chrX:8109670-8109750 ( 63) TTCAAAAA 1 chrII:6356145-6356225 ( 14) TTCAAAAA 1 chrIII:10895971-10896051 ( 1) TTTAAATA 1 chrIV:12123034-12123114 ( 6) TTCAAATA 1 chrI:14101189-14101269 ( 29) TTTGCAAT 1 chrIII:4187030-4187110 ( 27) TTTGCAAT 1 chrI:3829424-3829504 ( 42) TTCGCAAT 1 chrII:11830789-11830869 ( 20) TTTGCATT 1 chrIII:4878440-4878520 ( 43) TTTGCATT 1 chrV:12743935-12744015 ( 44) TTTGCATT 1 chrI:6562518-6562598 ( 38) TTTGAACT 1 chrIII:13423592-13423672 ( 67) TTTGAACT 1 chrIII:9776093-9776173 ( 38) TTTGAACT 1 chrII:11175502-11175582 ( 12) TTTGCAAA 1 chrIII:9798662-9798742 ( 72) TTCGCAAA 1 chrII:5819830-5819910 ( 37) TTCACAAT 1 chrI:5118929-5119009 ( 53) TTCACAAT 1 chrI:14496563-14496643 ( 51) TTTGCATA 1 chrV:156209-156289 ( 6) TTTGAACA 1 chrIV:1657221-1657301 ( 12) TTTACAAA 1 chrIII:7359194-7359274 ( 1) TGTGAAAT 1 chrII:11578500-11578580 ( 5) TGCGAAAT 1 chrII:13083904-13083984 ( 4) TTTGAAAC 1 chrI:2620455-2620535 ( 28) TTCAAACA 1 chrV:15585903-15585983 ( 37) TGCGAAAA 1 chrX:1853734-1853814 ( 48) TGTGAATA 1 chrV:16022769-16022849 ( 7) TTCAAAAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTYRAAWW MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.11479 E= 3.8e-010 -1281 -1281 -1281 198 -1281 -1281 -214 189 -1281 93 -1281 109 48 -1281 138 -1281 168 -53 -1281 -1281 195 -1281 -1281 -1281 106 -179 -1281 61 53 -311 -1281 123 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTYRAAWW MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 72 E= 3.8e-010 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.055556 0.944444 0.000000 0.458333 0.000000 0.541667 0.361111 0.000000 0.638889 0.000000 0.833333 0.166667 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.541667 0.069444 0.000000 0.388889 0.375000 0.027778 0.000000 0.597222 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTYRAAWW MEME-4 regular expression -------------------------------------------------------------------------------- TT[TC][GA]AA[AT][TA] -------------------------------------------------------------------------------- Time 15.22 secs. ******************************************************************************** ******************************************************************************** MOTIF AGAGACGC MEME-5 width = 8 sites = 18 llr = 179 E-value = 5.2e-004 ******************************************************************************** -------------------------------------------------------------------------------- Motif AGAGACGC MEME-5 Description -------------------------------------------------------------------------------- Simplified A 9:a1a::: pos.-specific C :::::9:9 probability G :a:9::a1 matrix T 1::::1:: bits 2.1 * * 1.8 ** * * 1.6 *** **** 1.4 ******** Relative 1.2 ******** Entropy 1.0 ******** (14.4 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AGAGACGC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAGACGC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrI:14711017-14711097 41 1.48e-05 TTGCAAAGCG AGAGACGC AGAGTCTGCT chrIII:7067536-7067616 60 1.48e-05 GTGAGGACGT AGAGACGC AGGAGATACA chrIV:2846405-2846485 57 1.48e-05 AAACACTTTG AGAGACGC AGACACATAA chrIII:11505377-11505457 63 1.48e-05 TGAGAGAGTG AGAGACGC CAGACAAGCC chrIII:1249368-1249448 31 1.48e-05 AGAGACCTAT AGAGACGC AGAGAAAAAC chrIV:1657221-1657301 48 1.48e-05 CTAGAGGCAG AGAGACGC AGACTAGACA chrIII:3719751-3719831 23 1.48e-05 TTGAGAGTTG AGAGACGC AGGAGTTATT chrII:1663678-1663758 47 1.48e-05 ATCAGTACTC AGAGACGC AGACGGCAAA chrI:14179760-14179840 48 1.48e-05 GGCGGGGGTG AGAGACGC AGAGATAGTG chrI:10374014-10374094 54 1.48e-05 TGAGAATATG AGAGACGC AGCAGCTTAC chrV:2122660-2122740 57 1.48e-05 CACAGTGTTA AGAGACGC AGGCGGTTCA chrX:4853178-4853258 64 1.48e-05 CTGCGATGGA AGAGACGC AGATGGATA chrI:10173209-10173289 7 4.56e-05 AAAAGA AGAGACGG CGGCAAACAC chrI:4770014-4770094 41 4.56e-05 CGCGCTCTAT AGAAACGC GCGAAATTGG chrX:5205704-5205784 15 4.56e-05 TGTGTCTGTA AGAGACGG CGAGAGAGCG chrII:6056092-6056172 12 4.56e-05 TCGTTGAAAA AGAAACGC GCAAGCCTTT chrX:4254989-4255069 14 6.02e-05 ACCAACACAC TGAGACGC GCTCTCCACA chrX:14525528-14525608 62 7.58e-05 GTTTGTCAAG AGAGATGC TAATAACTTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAGACGC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:14711017-14711097 1.5e-05 40_[+5]_32 chrIII:7067536-7067616 1.5e-05 59_[+5]_13 chrIV:2846405-2846485 1.5e-05 56_[+5]_16 chrIII:11505377-11505457 1.5e-05 62_[+5]_10 chrIII:1249368-1249448 1.5e-05 30_[+5]_42 chrIV:1657221-1657301 1.5e-05 47_[+5]_25 chrIII:3719751-3719831 1.5e-05 22_[+5]_50 chrII:1663678-1663758 1.5e-05 46_[+5]_26 chrI:14179760-14179840 1.5e-05 47_[+5]_25 chrI:10374014-10374094 1.5e-05 53_[+5]_19 chrV:2122660-2122740 1.5e-05 56_[+5]_16 chrX:4853178-4853258 1.5e-05 63_[+5]_9 chrI:10173209-10173289 4.6e-05 6_[+5]_66 chrI:4770014-4770094 4.6e-05 40_[+5]_32 chrX:5205704-5205784 4.6e-05 14_[+5]_58 chrII:6056092-6056172 4.6e-05 11_[+5]_61 chrX:4254989-4255069 6e-05 13_[+5]_59 chrX:14525528-14525608 7.6e-05 61_[+5]_11 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAGACGC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AGAGACGC width=8 seqs=18 chrI:14711017-14711097 ( 41) AGAGACGC 1 chrIII:7067536-7067616 ( 60) AGAGACGC 1 chrIV:2846405-2846485 ( 57) AGAGACGC 1 chrIII:11505377-11505457 ( 63) AGAGACGC 1 chrIII:1249368-1249448 ( 31) AGAGACGC 1 chrIV:1657221-1657301 ( 48) AGAGACGC 1 chrIII:3719751-3719831 ( 23) AGAGACGC 1 chrII:1663678-1663758 ( 47) AGAGACGC 1 chrI:14179760-14179840 ( 48) AGAGACGC 1 chrI:10374014-10374094 ( 54) AGAGACGC 1 chrV:2122660-2122740 ( 57) AGAGACGC 1 chrX:4853178-4853258 ( 64) AGAGACGC 1 chrI:10173209-10173289 ( 7) AGAGACGG 1 chrI:4770014-4770094 ( 41) AGAAACGC 1 chrX:5205704-5205784 ( 15) AGAGACGG 1 chrII:6056092-6056172 ( 12) AGAAACGC 1 chrX:4254989-4255069 ( 14) TGAGACGC 1 chrX:14525528-14525608 ( 62) AGAGATGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAGACGC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.1187 E= 5.2e-004 186 -1081 -1081 -219 -1081 -1081 203 -1081 195 -1081 -1081 -1081 -122 -1081 186 -1081 195 -1081 -1081 -1081 -1081 197 -1081 -219 -1081 -1081 203 -1081 -1081 188 -114 -1081 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAGACGC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 18 E= 5.2e-004 0.944444 0.000000 0.000000 0.055556 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.111111 0.000000 0.888889 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.944444 0.000000 0.055556 0.000000 0.000000 1.000000 0.000000 0.000000 0.888889 0.111111 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAGACGC MEME-5 regular expression -------------------------------------------------------------------------------- AGAGACGC -------------------------------------------------------------------------------- Time 18.50 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:11176598-11176678 2.14e-02 80 chrX:2857582-2857662 5.31e-02 80 chrII:11106470-11106550 1.20e-01 80 chrX:11689228-11689308 8.61e-02 80 chrX:14525528-14525608 2.85e-02 61_[+5(7.58e-05)]_11 chrIII:9798662-9798742 1.02e-02 28_[+1(4.16e-05)]_44 chrIII:8967798-8967878 2.29e-04 50_[+2(1.33e-05)]_11_[+2(9.60e-05)]_\ 3 chrII:6356145-6356225 2.42e-04 80 chrI:4242527-4242607 9.25e-01 80 chrI:4959185-4959265 1.17e-02 64_[+3(4.44e-05)]_8 chrI:10192899-10192979 1.72e-03 40_[+1(1.43e-05)]_32 chrIV:12712174-12712254 1.60e-01 80 chrV:12952453-12952533 1.26e-01 21_[+1(2.80e-05)]_51 chrIV:12278674-12278754 1.12e-02 36_[+2(4.02e-05)]_36 chrI:2634677-2634757 8.58e-01 80 chrV:15585903-15585983 8.11e-04 23_[+1(1.43e-05)]_49 chrII:2991801-2991881 4.35e-01 80 chrV:10031929-10032009 2.27e-04 29_[+1(1.43e-05)]_43 chrII:2919218-2919298 7.70e-02 80 chrII:10926337-10926417 1.00e-01 31_[+2(9.60e-05)]_41 chrIII:8829383-8829463 1.90e-02 80 chrIV:10197478-10197558 3.42e-02 80 chrI:9080110-9080190 1.05e-02 32_[+2(6.76e-05)]_40 chrV:5790662-5790742 1.51e-01 80 chrIII:6367870-6367950 3.17e-02 8_[+1(1.43e-05)]_64 chrII:11464073-11464153 4.08e-03 28_[+1(1.43e-05)]_14_[+1(1.43e-05)]_\ 22 chrIV:13289519-13289599 2.49e-03 13_[+1(1.43e-05)]_59 chrIV:1347137-1347217 5.65e-04 14_[+1(5.46e-05)]_50_[+4(5.19e-05)] chrX:16376139-16376219 7.32e-04 31_[+1(1.43e-05)]_41 chrIII:4986946-4987026 1.91e-03 80 chrI:11222136-11222216 1.10e-02 48_[+2(6.76e-05)]_24 chrV:156209-156289 4.58e-03 39_[+2(2.76e-05)]_33 chrI:9955959-9956039 1.27e-01 55_[+2(6.76e-05)]_17 chrIII:5959181-5959261 1.03e-01 40_[+1(1.43e-05)]_32 chrI:636772-636852 6.04e-05 8_[+4(3.45e-05)]_16_[+1(1.43e-05)]_\ 10_[+2(9.60e-05)]_22 chrIV:4712570-4712650 1.37e-03 51_[+2(1.33e-05)]_21 chrI:9286676-9286756 4.29e-03 80 chrI:5118929-5119009 1.63e-04 1_[+1(1.43e-05)]_31_[+2(2.76e-05)]_\ 32 chrII:6950753-6950833 6.63e-03 28_[+1(1.43e-05)]_44 chrIV:8019930-8020010 1.88e-03 8_[+2(4.02e-05)]_11_[+2(1.33e-05)]_\ 45 chrI:13384681-13384761 8.84e-02 80 chrI:8255176-8255256 3.40e-02 30_[+1(1.43e-05)]_42 chrIV:10242908-10242988 1.16e-02 13_[+3(7.53e-05)]_59 chrIV:13487156-13487236 5.78e-01 80 chrII:291304-291384 2.66e-03 44_[+2(1.33e-05)]_28 chrX:10668030-10668110 5.18e-02 42_[+3(4.44e-05)]_30 chrIII:5803099-5803179 2.38e-03 28_[+1(1.43e-05)]_6_[+1(5.46e-05)]_\ 30 chrI:3817865-3817945 1.87e-02 36_[+1(4.16e-05)]_36 chrII:11542529-11542609 1.18e-01 80 chrII:11860906-11860986 1.95e-03 30_[+2(1.33e-05)]_42 chrIV:6369646-6369726 9.40e-04 34_[+1(5.46e-05)]_38 chrII:14401275-14401355 3.26e-02 69_[+4(3.45e-05)]_3 chrII:10247714-10247794 2.68e-01 80 chrV:20090860-20090940 1.45e-04 18_[+1(4.16e-05)]_17_[+2(1.33e-05)]_\ 29 chrI:13835185-13835265 1.60e-02 80 chrI:10653684-10653764 6.60e-01 80 chrIII:8683821-8683901 3.17e-04 17_[+1(1.43e-05)]_14_[+1(1.43e-05)]_\ 33 chrII:11578500-11578580 9.62e-03 29_[+1(1.43e-05)]_9_[+1(2.80e-05)]_\ 26 chrX:4254989-4255069 2.14e-04 13_[+5(6.02e-05)]_16_[+1(1.43e-05)]_\ 35 chrII:7397619-7397699 9.16e-04 38_[+1(4.16e-05)]_34 chrII:1123354-1123434 1.29e-06 12_[+1(2.80e-05)]_10_[+2(2.76e-05)]_\ 13_[+2(1.33e-05)]_9_[+4(5.19e-05)]_4 chrIII:9126054-9126134 5.31e-01 80 chrII:6056092-6056172 4.92e-02 11_[+5(4.56e-05)]_61 chrIV:813491-813571 1.13e-01 80 chrX:4853178-4853258 1.03e-04 63_[+5(1.48e-05)]_9 chrX:5205704-5205784 2.09e-04 14_[+5(4.56e-05)]_18_[+1(1.43e-05)]_\ 32 chrII:7123204-7123284 1.51e-02 9_[+3(4.44e-05)]_63 chrIV:257289-257369 4.12e-03 80 chrI:2144181-2144261 9.28e-01 80 chrII:5819830-5819910 4.42e-03 80 chrX:2572762-2572842 4.78e-03 4_[+2(4.02e-05)]_68 chrIV:4277857-4277937 7.36e-01 80 chrII:10714394-10714474 2.32e-04 65_[+4(5.19e-05)]_7 chrIII:8158559-8158639 1.06e-01 30_[+1(2.80e-05)]_42 chrIV:11592956-11593036 2.02e-03 80 chrV:12743935-12744015 1.38e-01 80 chrII:14563960-14564040 3.65e-03 6_[+1(1.43e-05)]_66 chrIII:7359194-7359274 5.03e-02 80 chrIII:1540262-1540342 2.03e-02 27_[+1(4.16e-05)]_45 chrII:7879478-7879558 1.36e-02 70_[+2(6.76e-05)]_2 chrIII:9776093-9776173 1.92e-01 80 chrIII:8310361-8310441 4.73e-01 80 chrIII:4187030-4187110 2.10e-04 17_[+1(1.43e-05)]_55 chrIV:8205394-8205474 1.96e-01 80 chrI:12904050-12904130 1.96e-01 80 chrIV:9336685-9336765 8.23e-03 55_[+2(6.76e-05)]_17 chrIV:11652114-11652194 8.65e-01 80 chrIII:13439561-13439641 3.27e-02 24_[+1(1.43e-05)]_48 chrIV:6747818-6747898 6.76e-02 80 chrI:4770014-4770094 1.00e-02 40_[+5(4.56e-05)]_32 chrIV:3506103-3506183 1.41e-01 80 chrII:11175502-11175582 1.39e-04 27_[+3(4.44e-05)]_45 chrI:7224678-7224758 3.81e-01 80 chrIII:4704077-4704157 9.58e-01 80 chrII:14857078-14857158 3.06e-04 15_[+1(2.80e-05)]_14_[+1(4.16e-05)]_\ 13_[+2(1.33e-05)]_14 chrIV:17118739-17118819 1.03e-02 80 chrV:2603175-2603255 2.03e-04 30_[+2(5.40e-05)]_42 chrIV:4171902-4171982 1.21e-02 34_[+1(4.16e-05)]_38 chrIV:13783701-13783781 3.01e-04 13_[+1(9.65e-05)]_12_[+2(1.33e-05)]_\ 39 chrIV:9797504-9797584 1.49e-06 31_[+1(1.43e-05)]_20_[+2(2.76e-05)]_\ 13 chrV:2122660-2122740 1.98e-04 9_[+2(1.33e-05)]_39_[+5(1.48e-05)]_\ 16 chrIII:11093632-11093712 4.99e-01 80 chrI:2385106-2385186 2.30e-03 69_[+4(1.77e-05)]_3 chrIV:15528994-15529074 5.97e-03 80 chrII:8525493-8525573 3.45e-03 80 chrX:3379239-3379319 5.30e-02 54_[+1(2.80e-05)]_18 chrX:1853734-1853814 2.23e-03 80 chrII:14754358-14754438 2.56e-03 32_[+1(1.43e-05)]_40 chrIV:2896125-2896205 7.72e-02 80 chrIV:6097707-6097787 3.64e-01 80 chrIII:4922185-4922265 3.02e-02 80 chrII:7615571-7615651 2.95e-01 80 chrIV:16422325-16422405 1.84e-04 18_[+2(1.33e-05)]_54 chrI:10718342-10718422 2.17e-04 80 chrIII:10895971-10896051 3.55e-03 31_[+3(4.44e-05)]_41 chrIII:4878440-4878520 2.66e-01 80 chrIII:6379270-6379350 3.51e-03 35_[+3(1.54e-05)]_37 chrIII:8268431-8268511 4.47e-03 45_[+2(6.76e-05)]_27 chrII:9319561-9319641 1.24e-03 14_[+1(1.43e-05)]_21_[+2(4.02e-05)]_\ 29 chrIV:9899414-9899494 2.47e-01 80 chrV:10441252-10441332 5.60e-02 34_[+1(4.16e-05)]_38 chrIII:5864414-5864494 1.14e-02 32_[+1(1.43e-05)]_40 chrII:14480023-14480103 2.72e-01 80 chrI:10374014-10374094 4.48e-02 53_[+5(1.48e-05)]_19 chrII:6197027-6197107 1.05e-02 32_[+3(1.54e-05)]_40 chrI:14496563-14496643 4.21e-02 80 chrIII:5102806-5102886 3.32e-01 80 chrI:14179760-14179840 3.38e-02 47_[+5(1.48e-05)]_25 chrIII:10120218-10120298 7.73e-03 21_[+1(1.43e-05)]_51 chrII:147646-147726 1.13e-02 22_[+1(5.46e-05)]_50 chrIII:1223861-1223941 2.35e-01 80 chrX:2488535-2488615 5.54e-03 24_[+1(2.80e-05)]_48 chrX:3101692-3101772 9.73e-01 80 chrIV:9777713-9777793 3.64e-04 16_[+2(2.76e-05)]_35_[+4(3.45e-05)]_\ 13 chrV:13591667-13591747 1.39e-03 49_[+2(1.33e-05)]_23 chrIV:12051196-12051276 1.69e-01 80 chrV:13625760-13625840 3.21e-04 23_[+4(3.45e-05)]_49 chrIII:4999032-4999112 6.93e-03 17_[+2(1.33e-05)]_55 chrIII:6625450-6625530 8.56e-02 80 chrX:13584990-13585070 7.70e-05 35_[+1(5.46e-05)]_16_[+2(2.76e-05)]_\ 13 chrIV:9858261-9858341 2.16e-03 34_[+3(4.44e-05)]_38 chrV:9536676-9536756 3.09e-03 42_[+1(1.43e-05)]_30 chrI:6949504-6949584 1.53e-01 80 chrI:638321-638401 8.44e-02 63_[+1(1.43e-05)]_9 chrIII:8700705-8700785 2.94e-01 80 chrIII:3855021-3855101 1.79e-02 80 chrI:14101189-14101269 1.25e-01 80 chrIV:6606757-6606837 1.70e-01 80 chrIII:11974605-11974685 3.75e-02 25_[+2(8.12e-05)]_47 chrII:1663678-1663758 3.94e-02 46_[+5(1.48e-05)]_26 chrI:3192726-3192806 7.76e-01 80 chrIV:11856425-11856505 3.42e-01 80 chrX:8110066-8110146 7.09e-02 26_[+2(5.40e-05)]_46 chrIII:5190352-5190432 3.91e-04 4_[+4(5.19e-05)]_27_[+2(4.02e-05)]_\ 33 chrV:13409228-13409308 6.79e-04 29_[+1(5.46e-05)]_43 chrV:14597945-14598025 1.13e-01 80 chrII:2059134-2059214 5.12e-01 80 chrI:2620455-2620535 3.75e-02 80 chrII:5715895-5715975 2.81e-02 80 chrX:14127476-14127556 9.15e-03 42_[+2(1.33e-05)]_30 chrII:4993943-4994023 3.40e-04 50_[+2(9.60e-05)]_[+1(1.43e-05)]_14 chrI:4958780-4958860 4.77e-01 80 chrII:14401655-14401735 1.09e-01 53_[+4(6.84e-05)]_19 chrIII:3719751-3719831 9.12e-02 22_[+5(1.48e-05)]_50 chrIV:7816551-7816631 2.22e-03 38_[+1(1.43e-05)]_34 chrIII:5047394-5047474 1.41e-02 80 chrIV:1657221-1657301 1.22e-02 47_[+5(1.48e-05)]_25 chrV:14425263-14425343 8.42e-02 80 chrV:13757504-13757584 4.94e-01 80 chrI:8369790-8369870 4.81e-04 17_[+3(1.54e-05)]_17_[+4(1.77e-05)]_\ 30 chrI:8962064-8962144 6.92e-01 80 chrI:3330922-3331002 3.90e-01 80 chrX:5486116-5486196 5.14e-01 80 chrI:12575315-12575395 4.51e-01 80 chrII:11916333-11916413 3.21e-01 [+4(8.65e-05)]_72 chrIV:12123034-12123114 1.83e-02 80 chrX:10078838-10078918 5.07e-01 80 chrII:6776504-6776584 5.92e-02 80 chrIII:11286241-11286321 1.00e-03 80 chrX:7798514-7798594 1.99e-02 80 chrI:4302345-4302425 1.63e-01 80 chrII:13083904-13083984 1.46e-02 80 chrI:10173209-10173289 2.51e-04 6_[+5(4.56e-05)]_2_[+3(1.54e-05)]_\ 56 chrII:11830789-11830869 1.47e-01 80 chrIII:5233313-5233393 2.65e-03 14_[+1(2.80e-05)]_13_[+2(2.76e-05)]_\ 37 chrX:8109670-8109750 3.68e-03 24_[+3(1.54e-05)]_48 chrIV:9196431-9196511 1.02e-01 80 chrI:7494695-7494775 2.30e-01 80 chrIII:9331230-9331310 3.13e-03 38_[+3(1.54e-05)]_34 chrI:7926436-7926516 1.14e-03 24_[+3(1.54e-05)]_48 chrIV:8540428-8540508 9.49e-02 42_[+3(5.87e-05)]_30 chrIII:7584426-7584506 9.82e-02 80 chrIII:6604451-6604531 8.44e-01 80 chrIII:5989514-5989594 7.91e-02 25_[+4(5.19e-05)]_47 chrIII:11915828-11915908 1.82e-03 33_[+3(1.54e-05)]_39 chrIV:3136654-3136734 2.95e-02 26_[+3(1.54e-05)]_46 chrIII:3248812-3248892 2.46e-01 80 chrIII:5076720-5076800 4.81e-01 80 chrX:7569805-7569885 1.88e-03 40_[+1(1.43e-05)]_32 chrI:3829424-3829504 7.09e-02 80 chrII:8746916-8746996 7.17e-01 80 chrIII:5594513-5594593 3.20e-02 36_[+1(9.65e-05)]_36 chrIV:572620-572700 3.32e-01 80 chrIII:13423592-13423672 4.46e-01 80 chrIII:1249368-1249448 6.42e-02 30_[+5(1.48e-05)]_42 chrIV:4720698-4720778 1.30e-01 80 chrII:7537769-7537849 5.89e-03 15_[+4(1.77e-05)]_57 chrX:2694871-2694951 2.12e-01 80 chrII:14142212-14142292 3.78e-03 8_[+3(1.54e-05)]_64 chrI:8511415-8511495 4.36e-02 41_[+2(2.76e-05)]_31 chrII:12914855-12914935 4.36e-04 9_[+4(5.19e-05)]_26_[+2(4.02e-05)]_\ 29 chrIII:11505377-11505457 2.06e-02 62_[+5(1.48e-05)]_10 chrX:16814125-16814205 4.20e-01 80 chrI:6562518-6562598 1.92e-01 80 chrX:14526214-14526294 2.75e-01 80 chrIII:5692839-5692919 4.69e-01 80 chrIII:4380980-4381060 7.07e-01 80 chrII:5429872-5429952 2.88e-02 15_[+3(1.54e-05)]_57 chrIII:5906208-5906288 7.29e-02 44_[+3(1.54e-05)]_28 chrV:724958-725038 2.45e-01 80 chrI:8434360-8434440 5.15e-03 17_[+3(1.54e-05)]_33_[+4(6.84e-05)]_\ 14 chrIV:2846405-2846485 1.22e-04 44_[+3(1.54e-05)]_4_[+5(1.48e-05)]_\ 16 chrIII:7067536-7067616 7.27e-03 59_[+5(1.48e-05)]_13 chrII:2787280-2787360 1.43e-02 64_[+3(1.54e-05)]_8 chrI:4215755-4215835 1.02e-01 80 chrIII:4332695-4332775 1.78e-02 80 chrI:2830391-2830471 4.92e-04 67_[+4(5.19e-05)]_5 chrX:2559577-2559657 2.15e-02 80 chrI:14756434-14756514 2.28e-04 39_[+2(6.76e-05)]_33 chrIII:12673519-12673599 1.16e-03 46_[+1(2.80e-05)]_7_[+2(1.33e-05)]_\ 11 chrI:3930560-3930640 1.73e-01 80 chrV:16022769-16022849 1.19e-04 64_[+2(2.76e-05)]_8 chrX:8104065-8104145 2.47e-01 80 chrIII:4343276-4343356 9.10e-06 2_[+4(1.77e-05)]_70 chrII:14474888-14474968 4.18e-02 32_[+3(1.54e-05)]_40 chrX:7682101-7682181 9.91e-01 80 chrV:7820417-7820497 9.23e-02 80 chrII:7699173-7699253 7.42e-02 80 chrI:7159328-7159408 8.98e-02 80 chrI:9114071-9114151 9.96e-01 80 chrI:10720329-10720409 1.83e-01 80 chrI:8759876-8759956 4.58e-03 45_[+2(5.40e-05)]_27 chrIV:5548989-5549069 4.82e-03 80 chrII:13834962-13835042 9.61e-01 80 chrIII:10931009-10931089 2.97e-01 80 chrI:14711017-14711097 3.11e-03 40_[+5(1.48e-05)]_32 chrV:20832055-20832135 6.55e-01 80 chrIV:12834473-12834553 9.36e-01 80 chrI:5281800-5281880 2.52e-04 40_[+2(1.33e-05)]_32 chrIII:11947696-11947776 5.19e-01 80 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n10.farnam.hpc.yale.internal ********************************************************************************