******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/worm/fasta/RankLinear2.0_40/mep-1.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrI:8138679-8138759 1.0000 80 chrV:12897499-12897579 1.0000 80 chrII:4640883-4640963 1.0000 80 chrI:4242511-4242591 1.0000 80 chrIII:6452846-6452926 1.0000 80 chrX:8157262-8157342 1.0000 80 chrX:9774440-9774520 1.0000 80 chrIV:2666272-2666352 1.0000 80 chrI:6626898-6626978 1.0000 80 chrIV:6294199-6294279 1.0000 80 chrI:10374011-10374091 1.0000 80 chrIII:3653956-3654036 1.0000 80 chrIII:7712093-7712173 1.0000 80 chrII:913385-913465 1.0000 80 chrIII:13169623-13169703 1.0000 80 chrIV:8618889-8618969 1.0000 80 chrIII:6248194-6248274 1.0000 80 chrII:10172635-10172715 1.0000 80 chrV:10134305-10134385 1.0000 80 chrI:3829422-3829502 1.0000 80 chrIII:4515308-4515388 1.0000 80 chrIII:2126047-2126127 1.0000 80 chrIV:13453692-13453772 1.0000 80 chrIII:4404493-4404573 1.0000 80 chrV:15610567-15610647 1.0000 80 chrII:1425496-1425576 1.0000 80 chrII:2204249-2204329 1.0000 80 chrX:11662764-11662844 1.0000 80 chrII:8964980-8965060 1.0000 80 chrIV:11856442-11856522 1.0000 80 chrIV:3579632-3579712 1.0000 80 chrIII:4274737-4274817 1.0000 80 chrV:13458008-13458088 1.0000 80 chrI:3930567-3930647 1.0000 80 chrII:12604418-12604498 1.0000 80 chrV:1570830-1570910 1.0000 80 chrII:5873884-5873964 1.0000 80 chrI:8083387-8083467 1.0000 80 chrII:7132047-7132127 1.0000 80 chrIII:12894356-12894436 1.0000 80 chrII:622640-622720 1.0000 80 chrIV:7924241-7924321 1.0000 80 chrIII:4332702-4332782 1.0000 80 chrV:9930744-9930824 1.0000 80 chrI:7553641-7553721 1.0000 80 chrV:14597978-14598058 1.0000 80 chrX:788128-788208 1.0000 80 chrIII:8405574-8405654 1.0000 80 chrX:9510096-9510176 1.0000 80 chrIV:3136649-3136729 1.0000 80 chrX:5981952-5982032 1.0000 80 chrIV:7909599-7909679 1.0000 80 chrII:9169619-9169699 1.0000 80 chrI:9841209-9841289 1.0000 80 chrV:1627393-1627473 1.0000 80 chrX:15347818-15347898 1.0000 80 chrI:13289862-13289942 1.0000 80 chrII:8716546-8716626 1.0000 80 chrII:7664404-7664484 1.0000 80 chrIII:9747312-9747392 1.0000 80 chrIII:6019900-6019980 1.0000 80 chrX:12903815-12903895 1.0000 80 chrI:8045102-8045182 1.0000 80 chrI:14523045-14523125 1.0000 80 chrV:14498365-14498445 1.0000 80 chrI:14496564-14496644 1.0000 80 chrX:7100450-7100530 1.0000 80 chrI:1701895-1701975 1.0000 80 chrII:7781255-7781335 1.0000 80 chrX:8791922-8792002 1.0000 80 chrIII:8310389-8310469 1.0000 80 chrI:4451090-4451170 1.0000 80 chrV:3195239-3195319 1.0000 80 chrX:10624339-10624419 1.0000 80 chrIV:9706850-9706930 1.0000 80 chrI:3466838-3466918 1.0000 80 chrIII:10248609-10248689 1.0000 80 chrI:13812438-13812518 1.0000 80 chrX:13669804-13669884 1.0000 80 chrI:11131556-11131636 1.0000 80 chrIV:12123048-12123128 1.0000 80 chrI:8529594-8529674 1.0000 80 chrIII:9507931-9508011 1.0000 80 chrV:13459457-13459537 1.0000 80 chrV:4169785-4169865 1.0000 80 chrX:15600697-15600777 1.0000 80 chrX:7565097-7565177 1.0000 80 chrII:702-782 1.0000 80 chrII:5460982-5461062 1.0000 80 chrV:17981854-17981934 1.0000 80 chrII:5691542-5691622 1.0000 80 chrI:10830949-10831029 1.0000 80 chrV:14546045-14546125 1.0000 80 chrIII:3716205-3716285 1.0000 80 chrV:20269908-20269988 1.0000 80 chrIII:12178370-12178450 1.0000 80 chrIII:3719703-3719783 1.0000 80 chrI:7224676-7224756 1.0000 80 chrIV:8511234-8511314 1.0000 80 chrIV:9107608-9107688 1.0000 80 chrIII:6869452-6869532 1.0000 80 chrIII:2132238-2132318 1.0000 80 chrIII:8737165-8737245 1.0000 80 chrI:5422336-5422416 1.0000 80 chrIII:7829078-7829158 1.0000 80 chrI:12486898-12486978 1.0000 80 chrI:1540676-1540756 1.0000 80 chrIII:5587088-5587168 1.0000 80 chrX:325793-325873 1.0000 80 chrII:3119062-3119142 1.0000 80 chrX:13995979-13996059 1.0000 80 chrX:1529149-1529229 1.0000 80 chrX:15508113-15508193 1.0000 80 chrX:12989329-12989409 1.0000 80 chrV:14177804-14177884 1.0000 80 chrII:7615610-7615690 1.0000 80 chrIV:3056063-3056143 1.0000 80 chrIII:8809700-8809780 1.0000 80 chrI:534296-534376 1.0000 80 chrII:11694633-11694713 1.0000 80 chrIII:1591823-1591903 1.0000 80 chrIV:10869014-10869094 1.0000 80 chrII:386110-386190 1.0000 80 chrII:13694860-13694940 1.0000 80 chrIII:13687345-13687425 1.0000 80 chrX:3772584-3772664 1.0000 80 chrIII:7766140-7766220 1.0000 80 chrII:6831065-6831145 1.0000 80 chrI:10479034-10479114 1.0000 80 chrIII:5988211-5988291 1.0000 80 chrX:14589184-14589264 1.0000 80 chrII:13036838-13036918 1.0000 80 chrV:11993858-11993938 1.0000 80 chrIV:11822608-11822688 1.0000 80 chrX:15007009-15007089 1.0000 80 chrIII:4291412-4291492 1.0000 80 chrIV:12451377-12451457 1.0000 80 chrI:7321653-7321733 1.0000 80 chrIII:11039390-11039470 1.0000 80 chrI:3876873-3876953 1.0000 80 chrX:16814154-16814234 1.0000 80 chrX:15590665-15590745 1.0000 80 chrX:10695143-10695223 1.0000 80 chrIII:3127811-3127891 1.0000 80 chrX:13262051-13262131 1.0000 80 chrI:5344428-5344508 1.0000 80 chrIII:9528990-9529070 1.0000 80 chrV:1236405-1236485 1.0000 80 chrV:966316-966396 1.0000 80 chrIV:12685964-12686044 1.0000 80 chrIII:3510064-3510144 1.0000 80 chrX:13221467-13221547 1.0000 80 chrI:4320850-4320930 1.0000 80 chrIV:13390636-13390716 1.0000 80 chrIII:10896002-10896082 1.0000 80 chrV:1575776-1575856 1.0000 80 chrI:11930649-11930729 1.0000 80 chrIII:5047371-5047451 1.0000 80 chrI:3866040-3866120 1.0000 80 chrII:11567473-11567553 1.0000 80 chrI:5291883-5291963 1.0000 80 chrV:10238831-10238911 1.0000 80 chrI:6460855-6460935 1.0000 80 chrX:4997829-4997909 1.0000 80 chrIII:4380968-4381048 1.0000 80 chrX:8160186-8160266 1.0000 80 chrII:11403333-11403413 1.0000 80 chrV:20744434-20744514 1.0000 80 chrI:7640094-7640174 1.0000 80 chrX:5179162-5179242 1.0000 80 chrX:954849-954929 1.0000 80 chrX:9213672-9213752 1.0000 80 chrX:8159074-8159154 1.0000 80 chrI:9501013-9501093 1.0000 80 chrIII:9580673-9580753 1.0000 80 chrII:11652940-11653020 1.0000 80 chrIII:12528161-12528241 1.0000 80 chrII:13641491-13641571 1.0000 80 chrII:7816290-7816370 1.0000 80 chrII:12738945-12739025 1.0000 80 chrIV:9263982-9264062 1.0000 80 chrI:12904049-12904129 1.0000 80 chrV:7854111-7854191 1.0000 80 chrI:3845887-3845967 1.0000 80 chrI:10970262-10970342 1.0000 80 chrIV:14656711-14656791 1.0000 80 chrI:2620478-2620558 1.0000 80 chrI:3338425-3338505 1.0000 80 chrII:10452526-10452606 1.0000 80 chrV:12649706-12649786 1.0000 80 chrII:6409235-6409315 1.0000 80 chrIII:11565755-11565835 1.0000 80 chrI:7835631-7835711 1.0000 80 chrII:3621018-3621098 1.0000 80 chrI:10330598-10330678 1.0000 80 chrI:10173198-10173278 1.0000 80 chrII:1472448-1472528 1.0000 80 chrIII:5698511-5698591 1.0000 80 chrI:14897438-14897518 1.0000 80 chrIV:8360170-8360250 1.0000 80 chrI:3438921-3439001 1.0000 80 chrX:11369165-11369245 1.0000 80 chrIII:8899863-8899943 1.0000 80 chrIII:2698900-2698980 1.0000 80 chrX:14486597-14486677 1.0000 80 chrIII:13768233-13768313 1.0000 80 chrX:14491147-14491227 1.0000 80 chrI:3228086-3228166 1.0000 80 chrIV:9858250-9858330 1.0000 80 chrI:8692604-8692684 1.0000 80 chrIV:7774372-7774452 1.0000 80 chrV:11733642-11733722 1.0000 80 chrIV:15573994-15574074 1.0000 80 chrI:10772400-10772480 1.0000 80 chrIII:1962290-1962370 1.0000 80 chrI:14647592-14647672 1.0000 80 chrIII:4878423-4878503 1.0000 80 chrI:7466708-7466788 1.0000 80 chrV:8784457-8784537 1.0000 80 chrII:6522807-6522887 1.0000 80 chrIV:7982174-7982254 1.0000 80 chrIV:7561903-7561983 1.0000 80 chrIV:15259795-15259875 1.0000 80 chrII:5907670-5907750 1.0000 80 chrII:4672744-4672824 1.0000 80 chrX:924638-924718 1.0000 80 chrIII:434511-434591 1.0000 80 chrIII:5448371-5448451 1.0000 80 chrI:14646696-14646776 1.0000 80 chrI:9471305-9471385 1.0000 80 chrV:11896633-11896713 1.0000 80 chrI:14642637-14642717 1.0000 80 chrII:10100079-10100159 1.0000 80 chrI:6073644-6073724 1.0000 80 chrI:4299651-4299731 1.0000 80 chrX:4869710-4869790 1.0000 80 chrX:5086266-5086346 1.0000 80 chrII:8602491-8602571 1.0000 80 chrIV:17333683-17333763 1.0000 80 chrIV:8136275-8136355 1.0000 80 chrIV:17118764-17118844 1.0000 80 chrI:10498074-10498154 1.0000 80 chrII:13012616-13012696 1.0000 80 chrII:7374302-7374382 1.0000 80 chrIV:5078200-5078280 1.0000 80 chrII:10504896-10504976 1.0000 80 chrI:3192768-3192848 1.0000 80 chrI:14787901-14787981 1.0000 80 chrI:8416268-8416348 1.0000 80 chrIV:3351512-3351592 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/worm/inference_raw/MEME/RankLinear2.0_40_mep-1/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/worm/fasta/RankLinear2.0_40/mep-1.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.256 C 0.239 G 0.236 T 0.269 Background letter frequencies (from file dataset with add-one prior applied): A 0.256 C 0.239 G 0.236 T 0.269 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF RGAGMGCG MEME-1 width = 8 sites = 69 llr = 570 E-value = 1.6e-037 ******************************************************************************** -------------------------------------------------------------------------------- Motif RGAGMGCG MEME-1 Description -------------------------------------------------------------------------------- Simplified A 6:a:3:13 pos.-specific C ::::7:6: probability G 4a:a:a:7 matrix T 1:::::2: bits 2.1 * * * 1.9 *** * 1.7 *** * 1.5 *** * Relative 1.2 *** * Entropy 1.0 ***** * (11.9 bits) 0.8 ****** * 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AGAGCGCG consensus G A TA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGAGMGCG MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrI:14787901-14787981 34 1.16e-05 GCGTGACAAT AGAGCGCG CTTGGTGTGT chrI:14642637-14642717 48 1.16e-05 ACATGACGAT AGAGCGCG TTTGTATAGC chrIV:7774372-7774452 42 1.16e-05 ACTTCTCAAT AGAGCGCG TTTGCAGTCA chrX:16814154-16814234 35 1.16e-05 CGTTCTCATT AGAGCGCG CTTGCTGTAC chrX:15508113-15508193 50 1.16e-05 TTTGTGCAAT AGAGCGCG CTTGCTACCG chrIII:3716205-3716285 34 1.16e-05 AATTGTCATT AGAGCGCG CTTGCTGACC chrI:10830949-10831029 59 1.16e-05 GAATTGAAAT AGAGCGCG TTTGCTGAGG chrV:4169785-4169865 67 1.16e-05 GCTTCGCGTT AGAGCGCG CTTGCA chrIII:10248609-10248689 19 1.16e-05 GTTTTGCGGT AGAGCGCG CTTGCACTGT chrX:10624339-10624419 35 1.16e-05 AGTGACCAGC AGAGCGCG CTTGCATACT chrII:913385-913465 46 1.16e-05 CCCTAGCAGT AGAGCGCG TTTACATTCT chrI:3192768-3192848 8 2.23e-05 GTTCGGT GGAGCGCG TTTGCTTTTA chrV:11733642-11733722 43 2.23e-05 CATTGTCATT GGAGCGCG CTTTCCCCAA chrI:3228086-3228166 5 2.23e-05 CATT GGAGCGCG TTTGTTGTCC chrIII:11565755-11565835 53 2.23e-05 TATTATCGGT GGAGCGCG CATGCTTTTT chrI:3866040-3866120 16 2.23e-05 ATTGTACAAC GGAGCGCG TTTGGTTAGA chrX:14589184-14589264 73 2.23e-05 TTTTGCCAAT GGAGCGCG chrIII:8809700-8809780 38 2.23e-05 TTTTATCTAC GGAGCGCG CTTGCGACAG chrIII:5587088-5587168 41 2.23e-05 TCTGTCAGAT GGAGCGCG TTTGGTGCAT chrI:12486898-12486978 32 2.23e-05 GGTGTGCGGT GGAGCGCG CTTGCACACT chrI:13812438-13812518 36 2.23e-05 GATTCTCAAT GGAGCGCG CTTGCAGTTT chrI:3466838-3466918 56 2.23e-05 CTTGTGCGAT GGAGCGCG CTTGCTATTT chrIV:13453692-13453772 25 2.23e-05 CGTTCTCAAT GGAGCGCG CTTGCTGACT chrIII:3653956-3654036 29 2.23e-05 AGTTTGCATT GGAGCGCG TTTCATAAGA chrIII:9580673-9580753 8 4.74e-05 ACGCATT AGAGCGCA TTTGCGTTGT chrX:7100450-7100530 9 4.74e-05 TTCTCAAT AGAGCGCA CTTGTACAGA chrII:12604418-12604498 43 4.74e-05 ATGTAAAAAG AGAGCGCA CGAAAATTTC chrII:8964980-8965060 57 4.74e-05 GTTTTCCGTC AGAGCGCA ACTGCGGCAC chrI:10374011-10374091 10 4.74e-05 GGGTCCGGT AGAGCGCA TTTGGAACGC chrII:10504896-10504976 19 5.88e-05 GTACAAAAAC GGAGAGCG TCATCGTTCA chrV:11896633-11896713 41 5.88e-05 CTGTGCTGGT GGAGAGCG GGAAACGGGA chrI:7466708-7466788 43 8.35e-05 TCGTATCACT GGAGCGCA GTTGCATATA chrIV:8360170-8360250 56 8.35e-05 GAAGTGCATT AGAGCGTG TTTGAGCGCA chrV:20744434-20744514 29 8.35e-05 ACTTGCTTAT AGAGCGTG CGAAAAGAGA chrIII:6869452-6869532 25 8.35e-05 GATTAGCGGT GGAGCGCA TCTGCTCTGC chrI:4451090-4451170 33 8.35e-05 TTAGTCCAAG GGAGCGCA GTTGCATTGG chrII:5873884-5873964 39 8.35e-05 AGTGCGCGAC GGAGCGCA CTTTCTATGA chrV:10134305-10134385 65 8.35e-05 CATGTCTGAC GGAGCGCA CTTGCACT chrIII:4878423-4878503 52 9.56e-05 AAAGTGCAGC GGAGCGTG TTTGCATTAC chrI:6073644-6073724 42 1.09e-04 GCAAAGGACA AGAGAGCA ATTCTCGAGT chrI:9501013-9501093 21 1.09e-04 CCGACGGAGA AGAGAGCA GTTGAGAGAA chrX:12989329-12989409 49 1.09e-04 TCGACTGACG AGAGAGCA GAGGCGACAG chrI:10772400-10772480 17 1.21e-04 TCATGAAAAA AGAGCGAG TGGTGGCTGG chrIII:6019900-6019980 30 1.21e-04 AAATCGCAAC AGAGCGAG TTTGCATTAT chrIV:17333683-17333763 40 1.48e-04 CAGCTATTGA AGAGAGTG TGTGTGCACG chrII:10100079-10100159 37 1.48e-04 ACGACGAAGA AGAGAGTG TGTAAATTGA chrIII:434511-434591 19 1.48e-04 CCTTTCAACg agagagtg cgtgagagag chrIV:15573994-15574074 42 1.48e-04 Ggagagagag agagagtg aagagatgga chrIII:2698900-2698980 56 1.48e-04 GCTACGCGCG AGAGAGTG GAGACGGCAG chrIII:3510064-3510144 17 1.48e-04 TTGCGCCACG AGAGAGTG TGTGAAATGG chrIII:1591823-1591903 54 1.48e-04 tagggaaatg agagagtg cagagataga chrI:8529594-8529674 26 1.48e-04 GCCCGGAATG AGAGAGTG AGAGACGAAA chrI:3930567-3930647 1 1.48e-04 . AGAGAGTG AGAGAGTATG chrIV:7561903-7561983 62 1.74e-04 CGCACACAAT AGAGCGTA TTGGCAGATA chrI:10479034-10479114 49 1.74e-04 ACCATTCACT AGAGCGTA ATTGCAAAAA chrI:3338425-3338505 72 1.86e-04 TATGCCGTAC GGAGAGTG T chrX:4997829-4997909 49 2.00e-04 AATTGTCGGT GGAGCGTA CTTGCTGATC chrIV:17118764-17118844 38 2.12e-04 GTCGGCAAGG TGAGCGCG CGCGTTTTTC chrI:4242511-4242591 66 2.12e-04 atttagcggt tgagcgcg attgcac chrI:5422336-5422416 20 2.25e-04 AAACGTGAAT AGAGAGAG AGAAGCAGCG chrX:9774440-9774520 69 2.25e-04 TCTGCAGACG AGAGAGAG AGGG chrIII:3127811-3127891 30 2.66e-04 CAAAATGTGT GGAGAGAG ACGACGACGC chrI:9841209-9841289 1 2.66e-04 . agagagta tagagaagaa chrV:12897499-12897579 73 3.06e-04 TCAGGATAAT TGAGAGCG chrX:5086266-5086346 64 3.19e-04 CACTCTCCAC TGAGCGCA CTCTCTCTA chrV:966316-966396 61 3.33e-04 GTCTTCAAGT AGAGAGAA GCCGTCAGAT chrX:9213672-9213752 13 3.60e-04 TCAGTTTGTT GGAGAGAA GGGGTACTCG chrV:1236405-1236485 47 3.60e-04 GTACGCGCGC GGAGAGAA AAGTAGGCGG chrIII:8405574-8405654 45 3.60e-04 AATAATTCGT GGAGAGAA GAAACCGTGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGAGMGCG MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:14787901-14787981 1.2e-05 33_[+1]_39 chrI:14642637-14642717 1.2e-05 47_[+1]_25 chrIV:7774372-7774452 1.2e-05 41_[+1]_31 chrX:16814154-16814234 1.2e-05 34_[+1]_38 chrX:15508113-15508193 1.2e-05 49_[+1]_23 chrIII:3716205-3716285 1.2e-05 33_[+1]_39 chrI:10830949-10831029 1.2e-05 58_[+1]_14 chrV:4169785-4169865 1.2e-05 66_[+1]_6 chrIII:10248609-10248689 1.2e-05 18_[+1]_54 chrX:10624339-10624419 1.2e-05 34_[+1]_38 chrII:913385-913465 1.2e-05 45_[+1]_27 chrI:3192768-3192848 2.2e-05 7_[+1]_65 chrV:11733642-11733722 2.2e-05 42_[+1]_30 chrI:3228086-3228166 2.2e-05 4_[+1]_68 chrIII:11565755-11565835 2.2e-05 52_[+1]_20 chrI:3866040-3866120 2.2e-05 15_[+1]_57 chrX:14589184-14589264 2.2e-05 72_[+1] chrIII:8809700-8809780 2.2e-05 37_[+1]_35 chrIII:5587088-5587168 2.2e-05 40_[+1]_32 chrI:12486898-12486978 2.2e-05 31_[+1]_41 chrI:13812438-13812518 2.2e-05 35_[+1]_37 chrI:3466838-3466918 2.2e-05 55_[+1]_17 chrIV:13453692-13453772 2.2e-05 24_[+1]_48 chrIII:3653956-3654036 2.2e-05 28_[+1]_44 chrIII:9580673-9580753 4.7e-05 7_[+1]_65 chrX:7100450-7100530 4.7e-05 8_[+1]_64 chrII:12604418-12604498 4.7e-05 42_[+1]_30 chrII:8964980-8965060 4.7e-05 56_[+1]_16 chrI:10374011-10374091 4.7e-05 9_[+1]_63 chrII:10504896-10504976 5.9e-05 18_[+1]_54 chrV:11896633-11896713 5.9e-05 40_[+1]_32 chrI:7466708-7466788 8.4e-05 42_[+1]_30 chrIV:8360170-8360250 8.4e-05 55_[+1]_17 chrV:20744434-20744514 8.4e-05 28_[+1]_44 chrIII:6869452-6869532 8.4e-05 24_[+1]_48 chrI:4451090-4451170 8.4e-05 32_[+1]_40 chrII:5873884-5873964 8.4e-05 38_[+1]_34 chrV:10134305-10134385 8.4e-05 64_[+1]_8 chrIII:4878423-4878503 9.6e-05 51_[+1]_21 chrI:6073644-6073724 0.00011 41_[+1]_31 chrI:9501013-9501093 0.00011 20_[+1]_52 chrX:12989329-12989409 0.00011 48_[+1]_24 chrI:10772400-10772480 0.00012 16_[+1]_56 chrIII:6019900-6019980 0.00012 29_[+1]_43 chrIV:17333683-17333763 0.00015 39_[+1]_33 chrII:10100079-10100159 0.00015 36_[+1]_36 chrIII:434511-434591 0.00015 18_[+1]_54 chrIV:15573994-15574074 0.00015 41_[+1]_31 chrIII:2698900-2698980 0.00015 55_[+1]_17 chrIII:3510064-3510144 0.00015 16_[+1]_56 chrIII:1591823-1591903 0.00015 53_[+1]_19 chrI:8529594-8529674 0.00015 25_[+1]_47 chrI:3930567-3930647 0.00015 [+1]_72 chrIV:7561903-7561983 0.00017 61_[+1]_11 chrI:10479034-10479114 0.00017 48_[+1]_24 chrI:3338425-3338505 0.00019 71_[+1]_1 chrX:4997829-4997909 0.0002 48_[+1]_24 chrIV:17118764-17118844 0.00021 37_[+1]_35 chrI:4242511-4242591 0.00021 65_[+1]_7 chrI:5422336-5422416 0.00023 19_[+1]_53 chrX:9774440-9774520 0.00023 68_[+1]_4 chrIII:3127811-3127891 0.00027 29_[+1]_43 chrI:9841209-9841289 0.00027 [+1]_72 chrV:12897499-12897579 0.00031 72_[+1] chrX:5086266-5086346 0.00032 63_[+1]_9 chrV:966316-966396 0.00033 60_[+1]_12 chrX:9213672-9213752 0.00036 12_[+1]_60 chrV:1236405-1236485 0.00036 46_[+1]_26 chrIII:8405574-8405654 0.00036 44_[+1]_28 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGAGMGCG MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RGAGMGCG width=8 seqs=69 chrI:14787901-14787981 ( 34) AGAGCGCG 1 chrI:14642637-14642717 ( 48) AGAGCGCG 1 chrIV:7774372-7774452 ( 42) AGAGCGCG 1 chrX:16814154-16814234 ( 35) AGAGCGCG 1 chrX:15508113-15508193 ( 50) AGAGCGCG 1 chrIII:3716205-3716285 ( 34) AGAGCGCG 1 chrI:10830949-10831029 ( 59) AGAGCGCG 1 chrV:4169785-4169865 ( 67) AGAGCGCG 1 chrIII:10248609-10248689 ( 19) AGAGCGCG 1 chrX:10624339-10624419 ( 35) AGAGCGCG 1 chrII:913385-913465 ( 46) AGAGCGCG 1 chrI:3192768-3192848 ( 8) GGAGCGCG 1 chrV:11733642-11733722 ( 43) GGAGCGCG 1 chrI:3228086-3228166 ( 5) GGAGCGCG 1 chrIII:11565755-11565835 ( 53) GGAGCGCG 1 chrI:3866040-3866120 ( 16) GGAGCGCG 1 chrX:14589184-14589264 ( 73) GGAGCGCG 1 chrIII:8809700-8809780 ( 38) GGAGCGCG 1 chrIII:5587088-5587168 ( 41) GGAGCGCG 1 chrI:12486898-12486978 ( 32) GGAGCGCG 1 chrI:13812438-13812518 ( 36) GGAGCGCG 1 chrI:3466838-3466918 ( 56) GGAGCGCG 1 chrIV:13453692-13453772 ( 25) GGAGCGCG 1 chrIII:3653956-3654036 ( 29) GGAGCGCG 1 chrIII:9580673-9580753 ( 8) AGAGCGCA 1 chrX:7100450-7100530 ( 9) AGAGCGCA 1 chrII:12604418-12604498 ( 43) AGAGCGCA 1 chrII:8964980-8965060 ( 57) AGAGCGCA 1 chrI:10374011-10374091 ( 10) AGAGCGCA 1 chrII:10504896-10504976 ( 19) GGAGAGCG 1 chrV:11896633-11896713 ( 41) GGAGAGCG 1 chrI:7466708-7466788 ( 43) GGAGCGCA 1 chrIV:8360170-8360250 ( 56) AGAGCGTG 1 chrV:20744434-20744514 ( 29) AGAGCGTG 1 chrIII:6869452-6869532 ( 25) GGAGCGCA 1 chrI:4451090-4451170 ( 33) GGAGCGCA 1 chrII:5873884-5873964 ( 39) GGAGCGCA 1 chrV:10134305-10134385 ( 65) GGAGCGCA 1 chrIII:4878423-4878503 ( 52) GGAGCGTG 1 chrI:6073644-6073724 ( 42) AGAGAGCA 1 chrI:9501013-9501093 ( 21) AGAGAGCA 1 chrX:12989329-12989409 ( 49) AGAGAGCA 1 chrI:10772400-10772480 ( 17) AGAGCGAG 1 chrIII:6019900-6019980 ( 30) AGAGCGAG 1 chrIV:17333683-17333763 ( 40) AGAGAGTG 1 chrII:10100079-10100159 ( 37) AGAGAGTG 1 chrIII:434511-434591 ( 19) AGAGAGTG 1 chrIV:15573994-15574074 ( 42) AGAGAGTG 1 chrIII:2698900-2698980 ( 56) AGAGAGTG 1 chrIII:3510064-3510144 ( 17) AGAGAGTG 1 chrIII:1591823-1591903 ( 54) AGAGAGTG 1 chrI:8529594-8529674 ( 26) AGAGAGTG 1 chrI:3930567-3930647 ( 1) AGAGAGTG 1 chrIV:7561903-7561983 ( 62) AGAGCGTA 1 chrI:10479034-10479114 ( 49) AGAGCGTA 1 chrI:3338425-3338505 ( 72) GGAGAGTG 1 chrX:4997829-4997909 ( 49) GGAGCGTA 1 chrIV:17118764-17118844 ( 38) TGAGCGCG 1 chrI:4242511-4242591 ( 66) TGAGCGCG 1 chrI:5422336-5422416 ( 20) AGAGAGAG 1 chrX:9774440-9774520 ( 69) AGAGAGAG 1 chrIII:3127811-3127891 ( 30) GGAGAGAG 1 chrI:9841209-9841289 ( 1) AGAGAGTA 1 chrV:12897499-12897579 ( 73) TGAGAGCG 1 chrX:5086266-5086346 ( 64) TGAGCGCA 1 chrV:966316-966396 ( 61) AGAGAGAA 1 chrX:9213672-9213752 ( 13) GGAGAGAA 1 chrV:1236405-1236485 ( 47) GGAGAGAA 1 chrIII:8405574-8405654 ( 45) GGAGAGAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGAGMGCG MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.2095 E= 1.6e-037 110 -1275 73 -221 -1275 -1275 208 -1275 196 -1275 -1275 -1275 -1275 -1275 208 -1275 44 145 -1275 -1275 -1275 -1275 208 -1275 -97 138 -1275 -12 32 -1275 153 -1275 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGAGMGCG MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 69 E= 1.6e-037 0.550725 0.000000 0.391304 0.057971 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.347826 0.652174 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.130435 0.623188 0.000000 0.246377 0.318841 0.000000 0.681159 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGAGMGCG MEME-1 regular expression -------------------------------------------------------------------------------- [AG]GAG[CA]G[CT][GA] -------------------------------------------------------------------------------- Time 5.50 secs. ******************************************************************************** ******************************************************************************** MOTIF GCAAACRC MEME-2 width = 8 sites = 35 llr = 321 E-value = 1.6e-015 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCAAACRC MEME-2 Description -------------------------------------------------------------------------------- Simplified A ::a98:6: pos.-specific C :9:::9:a probability G a1::1:4: matrix T :::111:: bits 2.1 * * 1.9 * * * 1.7 *** * * 1.5 **** * * Relative 1.2 **** * * Entropy 1.0 ******** (13.2 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GCAAACAC consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAAACRC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrI:8692604-8692684 29 1.38e-05 GTAAAAGTCC GCAAACAC CGTGCCGCTC chrI:10173198-10173278 28 1.38e-05 AGAGACGGCG GCAAACAC AAGTGTGCAT chrIV:14656711-14656791 62 1.38e-05 TGTTTTGTAC GCAAACAC CGTGACGACA chrII:12738945-12739025 37 1.38e-05 TACACGAGAG GCAAACAC TCGTGCGCAA chrI:6460855-6460935 31 1.38e-05 ACGACTCCAG GCAAACAC GCTCCGTTGC chrX:10695143-10695223 43 1.38e-05 GTTGGAGTGT GCAAACAC GCTCCACTAT chrIII:4291412-4291492 65 1.38e-05 CTCACATTCC GCAAACAC GCTCACGT chrX:15007009-15007089 13 1.38e-05 TGACAAGTCC GCAAACAC CACGCAGACA chrX:3772584-3772664 10 1.38e-05 TTTTAGGCT GCAAACAC TACAACCTAC chrII:13694860-13694940 54 1.38e-05 TTCGAAGTCC GCAAACAC CGACAGCCGA chrX:325793-325873 8 1.38e-05 GGCGTGT GCAAACAC CACCACGCGC chrV:17981854-17981934 27 1.38e-05 GGTCGGGTAC GCAAACAC CGAGGTCCGC chrI:14523045-14523125 34 1.38e-05 CCACGAGTCC GCAAACAC TCACACGCAA chrIV:3136649-3136729 32 1.38e-05 GCAAGACTCC GCAAACAC GGGCATACAC chrI:8416268-8416348 54 2.66e-05 TAAGCTGTAT GCAAACGC GCTCTGAAAG chrIII:5448371-5448451 25 2.66e-05 TTTTTGCAAT GCAAACGC GCTCCACCGC chrIV:9858250-9858330 46 2.66e-05 GAGGGTGCCA GCAAACGC GCCCCTTCGT chrI:14897438-14897518 71 2.66e-05 GGGGAGTAAT GCAAACGC GC chrX:5179162-5179242 51 2.66e-05 CCCGGTGTGT GCAAACGC GCTCGATTCA chrIII:10896002-10896082 1 2.66e-05 . GCAAACGC GCTCGCTGAC chrIV:3579632-3579712 23 2.66e-05 aaatcgatgt gcaaacgc gctccatcgt chrI:12904049-12904129 35 4.11e-05 GCAGACGGAT GCAATCAC GCTCCATCGG chrV:13458008-13458088 54 5.39e-05 TGCGTAGTCC GCAAGCAC ACTTTTTCAA chrIV:9263982-9264062 45 8.18e-05 TCGTGGGAGG GCAATCGC AGCAAACGGG chrII:7816290-7816370 38 8.18e-05 AAATCCAAGA GCAATCGC GCGCTATTGA chrIV:13390636-13390716 3 8.18e-05 AT GCAATCGC GCTCTAACGC chrIII:3510064-3510144 56 8.18e-05 AGAAAAGTGT GCATACAC CGAATGCTGA chrI:3876873-3876953 68 8.18e-05 CTTTCGGTCT GCATACAC CAGAA chrI:14496564-14496644 53 8.18e-05 GGGCGCATTT GCATACAC TAATATTATT chrIII:4332702-4332782 39 9.36e-05 GAAAGAAAAT GCAAGCGC CGCACGGTTT chrIV:2666272-2666352 22 9.36e-05 CCTCCACCAT GCAAGCGC GCTCTATTGA chrV:12897499-12897579 52 1.21e-04 TAAGTGAACG GGAAACAC GGGTCAGGAT chrX:9213672-9213752 66 1.36e-04 GTTTACGTGC GCAAATAC TAGGCCA chrV:3195239-3195319 48 1.36e-04 TTGTCACTAT GCAAATAC AGGGATTTGT chrV:14177804-14177884 11 1.49e-04 AGGGAAAGGG GGAAACGC CACAATTCCC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAAACRC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:8692604-8692684 1.4e-05 28_[+2]_44 chrI:10173198-10173278 1.4e-05 27_[+2]_45 chrIV:14656711-14656791 1.4e-05 61_[+2]_11 chrII:12738945-12739025 1.4e-05 36_[+2]_36 chrI:6460855-6460935 1.4e-05 30_[+2]_42 chrX:10695143-10695223 1.4e-05 42_[+2]_30 chrIII:4291412-4291492 1.4e-05 64_[+2]_8 chrX:15007009-15007089 1.4e-05 12_[+2]_60 chrX:3772584-3772664 1.4e-05 9_[+2]_63 chrII:13694860-13694940 1.4e-05 53_[+2]_19 chrX:325793-325873 1.4e-05 7_[+2]_65 chrV:17981854-17981934 1.4e-05 26_[+2]_46 chrI:14523045-14523125 1.4e-05 33_[+2]_39 chrIV:3136649-3136729 1.4e-05 31_[+2]_41 chrI:8416268-8416348 2.7e-05 53_[+2]_19 chrIII:5448371-5448451 2.7e-05 24_[+2]_48 chrIV:9858250-9858330 2.7e-05 45_[+2]_27 chrI:14897438-14897518 2.7e-05 70_[+2]_2 chrX:5179162-5179242 2.7e-05 50_[+2]_22 chrIII:10896002-10896082 2.7e-05 [+2]_72 chrIV:3579632-3579712 2.7e-05 22_[+2]_50 chrI:12904049-12904129 4.1e-05 34_[+2]_38 chrV:13458008-13458088 5.4e-05 53_[+2]_19 chrIV:9263982-9264062 8.2e-05 44_[+2]_28 chrII:7816290-7816370 8.2e-05 37_[+2]_35 chrIV:13390636-13390716 8.2e-05 2_[+2]_70 chrIII:3510064-3510144 8.2e-05 55_[+2]_17 chrI:3876873-3876953 8.2e-05 67_[+2]_5 chrI:14496564-14496644 8.2e-05 52_[+2]_20 chrIII:4332702-4332782 9.4e-05 38_[+2]_34 chrIV:2666272-2666352 9.4e-05 21_[+2]_51 chrV:12897499-12897579 0.00012 51_[+2]_21 chrX:9213672-9213752 0.00014 65_[+2]_7 chrV:3195239-3195319 0.00014 47_[+2]_25 chrV:14177804-14177884 0.00015 10_[+2]_62 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAAACRC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCAAACRC width=8 seqs=35 chrI:8692604-8692684 ( 29) GCAAACAC 1 chrI:10173198-10173278 ( 28) GCAAACAC 1 chrIV:14656711-14656791 ( 62) GCAAACAC 1 chrII:12738945-12739025 ( 37) GCAAACAC 1 chrI:6460855-6460935 ( 31) GCAAACAC 1 chrX:10695143-10695223 ( 43) GCAAACAC 1 chrIII:4291412-4291492 ( 65) GCAAACAC 1 chrX:15007009-15007089 ( 13) GCAAACAC 1 chrX:3772584-3772664 ( 10) GCAAACAC 1 chrII:13694860-13694940 ( 54) GCAAACAC 1 chrX:325793-325873 ( 8) GCAAACAC 1 chrV:17981854-17981934 ( 27) GCAAACAC 1 chrI:14523045-14523125 ( 34) GCAAACAC 1 chrIV:3136649-3136729 ( 32) GCAAACAC 1 chrI:8416268-8416348 ( 54) GCAAACGC 1 chrIII:5448371-5448451 ( 25) GCAAACGC 1 chrIV:9858250-9858330 ( 46) GCAAACGC 1 chrI:14897438-14897518 ( 71) GCAAACGC 1 chrX:5179162-5179242 ( 51) GCAAACGC 1 chrIII:10896002-10896082 ( 1) GCAAACGC 1 chrIV:3579632-3579712 ( 23) GCAAACGC 1 chrI:12904049-12904129 ( 35) GCAATCAC 1 chrV:13458008-13458088 ( 54) GCAAGCAC 1 chrIV:9263982-9264062 ( 45) GCAATCGC 1 chrII:7816290-7816370 ( 38) GCAATCGC 1 chrIV:13390636-13390716 ( 3) GCAATCGC 1 chrIII:3510064-3510144 ( 56) GCATACAC 1 chrI:3876873-3876953 ( 68) GCATACAC 1 chrI:14496564-14496644 ( 53) GCATACAC 1 chrIII:4332702-4332782 ( 39) GCAAGCGC 1 chrIV:2666272-2666352 ( 22) GCAAGCGC 1 chrV:12897499-12897579 ( 52) GGAAACAC 1 chrX:9213672-9213752 ( 66) GCAAATAC 1 chrV:3195239-3195319 ( 48) GCAAATAC 1 chrV:14177804-14177884 ( 11) GGAAACGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAAACRC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.84661 E= 1.6e-015 -1177 -1177 208 -1177 -1177 198 -205 -1177 196 -1177 -1177 -1177 184 -1177 -1177 -165 164 -1177 -146 -123 -1177 198 -1177 -223 129 -1177 65 -1177 -1177 206 -1177 -1177 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAAACRC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 35 E= 1.6e-015 0.000000 0.000000 1.000000 0.000000 0.000000 0.942857 0.057143 0.000000 1.000000 0.000000 0.000000 0.000000 0.914286 0.000000 0.000000 0.085714 0.800000 0.000000 0.085714 0.114286 0.000000 0.942857 0.000000 0.057143 0.628571 0.000000 0.371429 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAAACRC MEME-2 regular expression -------------------------------------------------------------------------------- GCAAAC[AG]C -------------------------------------------------------------------------------- Time 9.32 secs. ******************************************************************************** ******************************************************************************** MOTIF AGAGACGS MEME-3 width = 8 sites = 30 llr = 273 E-value = 3.3e-009 ******************************************************************************** -------------------------------------------------------------------------------- Motif AGAGACGS MEME-3 Description -------------------------------------------------------------------------------- Simplified A a1a1a::1 pos.-specific C :::::9:5 probability G :9:8:1a4 matrix T :::1:::: bits 2.1 * 1.9 * * * * 1.7 *** *** 1.5 *** *** Relative 1.2 ******* Entropy 1.0 ******* (13.1 bits) 0.8 ******* 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AGAGACGC consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAGACGS MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIV:17333683-17333763 23 1.26e-05 TATAGAGTGA AGAGACGC AGCTATTGAA chrI:4299651-4299731 34 1.26e-05 TATTATTAAA AGAGACGC AGACAGTAGG chrI:14647592-14647672 36 1.26e-05 AAAAAGCCGG AGAGACGC AGACAGCTTG chrIV:8360170-8360250 31 1.26e-05 ATAACATGTT AGAGACGC AGATACTGAA chrIII:3510064-3510144 35 1.26e-05 TGTGAAATGG AGAGACGC GAGAGAAAAG chrIII:1591823-1591903 73 1.26e-05 agagatagag agagaCGC chrX:1529149-1529229 68 1.26e-05 GGCCGCGTGA AGAGACGC AGACG chrIII:2132238-2132318 13 1.26e-05 GATGACCGCT AGAGACGC AGAGAAAAAT chrIII:3719703-3719783 71 1.26e-05 TTGAGAGTTG AGAGACGC AG chrIV:8618889-8618969 1 1.26e-05 . AGAGACGC AGACAGAATG chrI:10374011-10374091 57 1.26e-05 TGAGAATATG AGAGACGC AGCAGCTTAC chrIII:5698511-5698591 45 2.50e-05 TTTAGAGAAA AGAGACGG AGACGTGCAG chrI:10173198-10173278 18 2.50e-05 TTCGAAAAGA AGAGACGG CGGCAAACAC chrV:7854111-7854191 40 2.50e-05 CATTTATTTG AGAGACGG GTCTCGCAAC chrV:20744434-20744514 44 2.50e-05 GTGCGAAAAG AGAGACGG CAGAGAAACG chrI:7321653-7321733 69 2.50e-05 AAAGATGAAA AGAGACGG AAGA chrI:8529594-8529674 34 3.85e-05 TGAGAGAGTG AGAGACGA AAAAAGTGTG chrIII:4332702-4332782 19 3.85e-05 CAAATGTGAG AGAGACGA GAGAAAGAAA chrIII:6248194-6248274 60 3.85e-05 AATCGACATG AGAGACGA CGAGGGACGG chrX:5086266-5086346 18 7.90e-05 AAACATCTGC AAAGACGC TCATTATAAA chrIII:434511-434591 38 7.90e-05 gtgagagaga agatacgc agagaaagag chrIII:4404493-4404573 42 7.90e-05 CGCCCCCTTG AGATACGC ACGCGGCACG chrX:924638-924718 55 1.05e-04 AAATTGCGCG AGAGAGGG GAGAGGTAGC chrV:10238831-10238911 14 1.05e-04 ATTGCGAGTG AGAAACGC GCGATAAACG chrII:11694633-11694713 8 1.05e-04 GCGCACG AGAAACGC GTCAGCCCCT chrX:15508113-15508193 23 1.05e-04 GCGGCACAGG AGAGAGGG AGGTTTGTCT chrV:1570830-1570910 48 1.05e-04 GTCTAGGACT AGAGAGGG AGGTCATCTT chrI:10498074-10498154 43 1.33e-04 TCGGGGAGAA AAAGACGG GCGGGAAGAA chrI:8692604-8692684 8 1.33e-04 CTCAATG AGATACGG TTTGTAAAAG chrV:1236405-1236485 6 1.33e-04 ACACA AAAGACGG AGAGCTAGAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAGACGS MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:17333683-17333763 1.3e-05 22_[+3]_50 chrI:4299651-4299731 1.3e-05 33_[+3]_39 chrI:14647592-14647672 1.3e-05 35_[+3]_37 chrIV:8360170-8360250 1.3e-05 30_[+3]_42 chrIII:3510064-3510144 1.3e-05 34_[+3]_38 chrIII:1591823-1591903 1.3e-05 72_[+3] chrX:1529149-1529229 1.3e-05 67_[+3]_5 chrIII:2132238-2132318 1.3e-05 12_[+3]_60 chrIII:3719703-3719783 1.3e-05 70_[+3]_2 chrIV:8618889-8618969 1.3e-05 [+3]_72 chrI:10374011-10374091 1.3e-05 56_[+3]_16 chrIII:5698511-5698591 2.5e-05 44_[+3]_28 chrI:10173198-10173278 2.5e-05 17_[+3]_55 chrV:7854111-7854191 2.5e-05 39_[+3]_33 chrV:20744434-20744514 2.5e-05 43_[+3]_29 chrI:7321653-7321733 2.5e-05 68_[+3]_4 chrI:8529594-8529674 3.9e-05 33_[+3]_39 chrIII:4332702-4332782 3.9e-05 18_[+3]_54 chrIII:6248194-6248274 3.9e-05 59_[+3]_13 chrX:5086266-5086346 7.9e-05 17_[+3]_55 chrIII:434511-434591 7.9e-05 37_[+3]_35 chrIII:4404493-4404573 7.9e-05 41_[+3]_31 chrX:924638-924718 0.0001 54_[+3]_18 chrV:10238831-10238911 0.0001 13_[+3]_59 chrII:11694633-11694713 0.0001 7_[+3]_65 chrX:15508113-15508193 0.0001 22_[+3]_50 chrV:1570830-1570910 0.0001 47_[+3]_25 chrI:10498074-10498154 0.00013 42_[+3]_30 chrI:8692604-8692684 0.00013 7_[+3]_65 chrV:1236405-1236485 0.00013 5_[+3]_67 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAGACGS MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AGAGACGS width=8 seqs=30 chrIV:17333683-17333763 ( 23) AGAGACGC 1 chrI:4299651-4299731 ( 34) AGAGACGC 1 chrI:14647592-14647672 ( 36) AGAGACGC 1 chrIV:8360170-8360250 ( 31) AGAGACGC 1 chrIII:3510064-3510144 ( 35) AGAGACGC 1 chrIII:1591823-1591903 ( 73) AGAGACGC 1 chrX:1529149-1529229 ( 68) AGAGACGC 1 chrIII:2132238-2132318 ( 13) AGAGACGC 1 chrIII:3719703-3719783 ( 71) AGAGACGC 1 chrIV:8618889-8618969 ( 1) AGAGACGC 1 chrI:10374011-10374091 ( 57) AGAGACGC 1 chrIII:5698511-5698591 ( 45) AGAGACGG 1 chrI:10173198-10173278 ( 18) AGAGACGG 1 chrV:7854111-7854191 ( 40) AGAGACGG 1 chrV:20744434-20744514 ( 44) AGAGACGG 1 chrI:7321653-7321733 ( 69) AGAGACGG 1 chrI:8529594-8529674 ( 34) AGAGACGA 1 chrIII:4332702-4332782 ( 19) AGAGACGA 1 chrIII:6248194-6248274 ( 60) AGAGACGA 1 chrX:5086266-5086346 ( 18) AAAGACGC 1 chrIII:434511-434591 ( 38) AGATACGC 1 chrIII:4404493-4404573 ( 42) AGATACGC 1 chrX:924638-924718 ( 55) AGAGAGGG 1 chrV:10238831-10238911 ( 14) AGAAACGC 1 chrII:11694633-11694713 ( 8) AGAAACGC 1 chrX:15508113-15508193 ( 23) AGAGAGGG 1 chrV:1570830-1570910 ( 48) AGAGAGGG 1 chrI:10498074-10498154 ( 43) AAAGACGG 1 chrI:8692604-8692684 ( 8) AGATACGG 1 chrV:1236405-1236485 ( 6) AAAGACGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAGACGS MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.92146 E= 3.3e-009 196 -1155 -1155 -1155 -136 -1155 193 -1155 196 -1155 -1155 -1155 -194 -1155 182 -142 196 -1155 -1155 -1155 -1155 191 -124 -1155 -1155 -1155 208 -1155 -136 116 63 -1155 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAGACGS MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 30 E= 3.3e-009 1.000000 0.000000 0.000000 0.000000 0.100000 0.000000 0.900000 0.000000 1.000000 0.000000 0.000000 0.000000 0.066667 0.000000 0.833333 0.100000 1.000000 0.000000 0.000000 0.000000 0.000000 0.900000 0.100000 0.000000 0.000000 0.000000 1.000000 0.000000 0.100000 0.533333 0.366667 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAGACGS MEME-3 regular expression -------------------------------------------------------------------------------- AGAGACG[CG] -------------------------------------------------------------------------------- Time 12.94 secs. ******************************************************************************** ******************************************************************************** MOTIF TGCGTCTC MEME-4 width = 8 sites = 30 llr = 268 E-value = 2.1e-006 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGCGTCTC MEME-4 Description -------------------------------------------------------------------------------- Simplified A ::1::::: pos.-specific C 3:6::a:a probability G :a3a::2: matrix T 7:1:a:8: bits 2.1 * * * * 1.9 * *** * 1.7 * *** * 1.5 * *** * Relative 1.2 * ***** Entropy 1.0 ** ***** (12.9 bits) 0.8 ** ***** 0.6 ** ***** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TGCGTCTC consensus C G G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCGTCTC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIV:3351512-3351592 12 1.48e-05 AGCTTTTCTC TGCGTCTC CATTGTCTTT chrI:8416268-8416348 35 1.48e-05 ATAAATTCTC TGCGTCTC TTAAGCTGTA chrI:3228086-3228166 25 1.48e-05 TGTTGTCCGC TGCGTCTC CACGCTTCGT chrV:966316-966396 15 1.48e-05 ATGTAAAGTC TGCGTCTC TATAGCCACC chrIV:3056063-3056143 27 1.48e-05 TTCAACTGTC TGCGTCTC CACTCTTCTC chrI:11131556-11131636 17 1.48e-05 CCCGCACACC TGCGTCTC TCACTCTCTC chrI:14523045-14523125 68 1.48e-05 ACACTTTCGC TGCGTCTC GCAAA chrIII:6019900-6019980 54 1.48e-05 TTATACACCC TGCGTCTC TTAAGTTCAC chrII:622640-622720 48 1.48e-05 CTTTTTTCTC TGCGTCTC TCGCTGAGAG chrII:913385-913465 17 1.48e-05 TTTTCCTGTC TGCGTCTC CAATCGTTTT chrII:8602491-8602571 26 4.26e-05 TCCCCTGCGG TGGGTCTC GCAGCGATCT chrI:10330598-10330678 5 4.26e-05 CTGT TGGGTCTC GCAGCGCGGG chrI:1701895-1701975 26 4.26e-05 TCACGTGCGG TGGGTCTC ACCACGATTC chrII:9169619-9169699 29 4.26e-05 TCGTCATTGA TGGGTCTC GCAACGCACG chrIV:7909599-7909679 20 4.26e-05 TAACGGGGAA TGGGTCTC GCAGCGGTCT chrV:10134305-10134385 31 5.55e-05 TACCGTTGAA TGCGTCGC GGCTCTAAAC chrIV:7982174-7982254 37 6.85e-05 TTCTGGCTGA CGGGTCTC GCCACGATCG chrIII:8899863-8899943 31 6.85e-05 TCGTAGGGAG CGGGTCTC GCCACGATTC chrIV:7924241-7924321 32 6.85e-05 TCCAACTGCA CGGGTCTC GCAACGATCA chrIV:8136275-8136355 19 9.29e-05 ATTTTCGGCA CGCGTCGC CCTCCGCATC chrI:14647592-14647672 70 9.29e-05 AATACAACGA CGCGTCGC GGC chrI:7321653-7321733 39 9.29e-05 GCAATGCGGT CGCGTCGC GGTTTCTGGG chrV:11993858-11993938 5 9.29e-05 CAGA CGCGTCGC GGCTCTGCGT chrII:7615610-7615690 36 9.29e-05 TGCGAGCGGC CGCGTCGC GGTCGTCTTT chrIV:12123048-12123128 33 9.29e-05 GCGTTGCGTA CGCGTCGC GGTCACCAAA chrI:3192768-3192848 40 1.10e-04 TGGAGTGTAG TGTGTCTC TGTGAGCTTT chrIII:4274737-4274817 54 1.10e-04 CGACGTTGTC TGTGTCTC CGTGCCACTG chrIII:2126047-2126127 25 1.10e-04 TAAGGTCATC TGTGTCTC TCACACATTG chrV:14177804-14177884 58 1.25e-04 TCACATTGTC TGAGTCTC ATGAAACCAT chrII:5460982-5461062 32 1.25e-04 CTGTTCTGTC TGAGTCTC TTCATGTGCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCGTCTC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:3351512-3351592 1.5e-05 11_[+4]_61 chrI:8416268-8416348 1.5e-05 34_[+4]_38 chrI:3228086-3228166 1.5e-05 24_[+4]_48 chrV:966316-966396 1.5e-05 14_[+4]_58 chrIV:3056063-3056143 1.5e-05 26_[+4]_46 chrI:11131556-11131636 1.5e-05 16_[+4]_56 chrI:14523045-14523125 1.5e-05 67_[+4]_5 chrIII:6019900-6019980 1.5e-05 53_[+4]_19 chrII:622640-622720 1.5e-05 47_[+4]_25 chrII:913385-913465 1.5e-05 16_[+4]_56 chrII:8602491-8602571 4.3e-05 25_[+4]_47 chrI:10330598-10330678 4.3e-05 4_[+4]_68 chrI:1701895-1701975 4.3e-05 25_[+4]_47 chrII:9169619-9169699 4.3e-05 28_[+4]_44 chrIV:7909599-7909679 4.3e-05 19_[+4]_53 chrV:10134305-10134385 5.6e-05 30_[+4]_42 chrIV:7982174-7982254 6.9e-05 36_[+4]_36 chrIII:8899863-8899943 6.9e-05 30_[+4]_42 chrIV:7924241-7924321 6.9e-05 31_[+4]_41 chrIV:8136275-8136355 9.3e-05 18_[+4]_54 chrI:14647592-14647672 9.3e-05 69_[+4]_3 chrI:7321653-7321733 9.3e-05 38_[+4]_34 chrV:11993858-11993938 9.3e-05 4_[+4]_68 chrII:7615610-7615690 9.3e-05 35_[+4]_37 chrIV:12123048-12123128 9.3e-05 32_[+4]_40 chrI:3192768-3192848 0.00011 39_[+4]_33 chrIII:4274737-4274817 0.00011 53_[+4]_19 chrIII:2126047-2126127 0.00011 24_[+4]_48 chrV:14177804-14177884 0.00013 57_[+4]_15 chrII:5460982-5461062 0.00013 31_[+4]_41 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCGTCTC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGCGTCTC width=8 seqs=30 chrIV:3351512-3351592 ( 12) TGCGTCTC 1 chrI:8416268-8416348 ( 35) TGCGTCTC 1 chrI:3228086-3228166 ( 25) TGCGTCTC 1 chrV:966316-966396 ( 15) TGCGTCTC 1 chrIV:3056063-3056143 ( 27) TGCGTCTC 1 chrI:11131556-11131636 ( 17) TGCGTCTC 1 chrI:14523045-14523125 ( 68) TGCGTCTC 1 chrIII:6019900-6019980 ( 54) TGCGTCTC 1 chrII:622640-622720 ( 48) TGCGTCTC 1 chrII:913385-913465 ( 17) TGCGTCTC 1 chrII:8602491-8602571 ( 26) TGGGTCTC 1 chrI:10330598-10330678 ( 5) TGGGTCTC 1 chrI:1701895-1701975 ( 26) TGGGTCTC 1 chrII:9169619-9169699 ( 29) TGGGTCTC 1 chrIV:7909599-7909679 ( 20) TGGGTCTC 1 chrV:10134305-10134385 ( 31) TGCGTCGC 1 chrIV:7982174-7982254 ( 37) CGGGTCTC 1 chrIII:8899863-8899943 ( 31) CGGGTCTC 1 chrIV:7924241-7924321 ( 32) CGGGTCTC 1 chrIV:8136275-8136355 ( 19) CGCGTCGC 1 chrI:14647592-14647672 ( 70) CGCGTCGC 1 chrI:7321653-7321733 ( 39) CGCGTCGC 1 chrV:11993858-11993938 ( 5) CGCGTCGC 1 chrII:7615610-7615690 ( 36) CGCGTCGC 1 chrIV:12123048-12123128 ( 33) CGCGTCGC 1 chrI:3192768-3192848 ( 40) TGTGTCTC 1 chrIII:4274737-4274817 ( 54) TGTGTCTC 1 chrIII:2126047-2126127 ( 25) TGTGTCTC 1 chrV:14177804-14177884 ( 58) TGAGTCTC 1 chrII:5460982-5461062 ( 32) TGAGTCTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCGTCTC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.92146 E= 2.1e-006 -1155 33 -1155 138 -1155 -1155 208 -1155 -194 124 18 -142 -1155 -1155 208 -1155 -1155 -1155 -1155 190 -1155 206 -1155 -1155 -1155 -1155 -2 151 -1155 206 -1155 -1155 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCGTCTC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 30 E= 2.1e-006 0.000000 0.300000 0.000000 0.700000 0.000000 0.000000 1.000000 0.000000 0.066667 0.566667 0.266667 0.100000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.233333 0.766667 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCGTCTC MEME-4 regular expression -------------------------------------------------------------------------------- [TC]G[CG]GTC[TG]C -------------------------------------------------------------------------------- Time 16.47 secs. ******************************************************************************** ******************************************************************************** MOTIF CWYTTTTC MEME-5 width = 8 sites = 68 llr = 481 E-value = 8.4e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif CWYTTTTC MEME-5 Description -------------------------------------------------------------------------------- Simplified A :41::::: pos.-specific C 9:5::219 probability G :1::::2: matrix T 155aa871 bits 2.1 1.9 ** 1.7 ** * 1.5 * ** * Relative 1.2 * *** * Entropy 1.0 * *** * (10.2 bits) 0.8 * ***** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CTTTTTTC consensus AC C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CWYTTTTC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIV:5078200-5078280 50 1.92e-05 CGCTTTTCTT CTCTTTTC ACTCTCGATC chrX:14491147-14491227 14 1.92e-05 GATTTCACGG CTCTTTTC TTAGAATGGT chrX:954849-954929 18 1.92e-05 TCGTCCTGTT CTCTTTTC TTTATTTCCC chrX:13669804-13669884 61 1.92e-05 TTTCTACTAT CTCTTTTC ACTGTTCACC chrX:10624339-10624419 4 1.92e-05 CCT CTCTTTTC TCATAACCCA chrIV:13453692-13453772 41 1.92e-05 CGCTTGCTGA CTCTTTTC GGACTTCGTT chrI:10330598-10330678 57 5.92e-05 ACCGTACCCC CACTTTTC TCTATTTTTC chrIII:11565755-11565835 65 5.92e-05 AGCGCGCATG CTTTTTTC GTTTTTCT chrIV:11822608-11822688 29 5.92e-05 CGCGGGGCTT CTTTTTTC GCGGCGAAAT chrX:325793-325873 35 5.92e-05 CAGTTGCGTA CTTTTTTC ACGGGAACAT chrIII:8737165-8737245 4 5.92e-05 GCC CACTTTTC TGTGCCAGCG chrII:5691542-5691622 63 5.92e-05 GTCCGCCGCG CACTTTTC TCTCGACTTT chrX:12903815-12903895 50 5.92e-05 ATTTCTCTGC CTTTTTTC CACTTCTTCT chrII:622640-622720 38 5.92e-05 GGGTGGAGCA CTTTTTTC TCTGCGTCTC chrI:8138679-8138759 38 5.92e-05 CTGTCTCCAT CTTTTTTC ATTGAAAGAC chrIII:5448371-5448451 60 7.98e-05 AATTTTCGAA CATTTTTC GCCAATTTTT chrI:534296-534376 73 7.98e-05 AGAGAAATGG CATTTTTC chrX:7565097-7565177 14 7.98e-05 CACACATTCT CATTTTTC CAATTGTTCT chrI:14787901-14787981 10 1.14e-04 TTACTGCGC CTCTTCTC TCTCACGCGT chrII:6831065-6831145 33 1.14e-04 CAGGACAGAT CTCTTCTC CCACATCTCG chrIV:10869014-10869094 19 1.14e-04 GTCGATTCCT CTCTTCTC TCTTCTACAC chrIV:3056063-3056143 37 1.14e-04 TGCGTCTCCA CTCTTCTC TTCTTCGCCT chrIV:8511234-8511314 11 1.14e-04 GGTCTCGCCG CGCTTTTC ACCACTAATG chrII:7664404-7664484 22 1.14e-04 CAGAAATTCC CGCTTTTC GGCACACATT chrIV:3351512-3351592 4 1.85e-04 GAG CTTTTCTC TGCGTCTCCA chrIV:17118764-17118844 48 1.85e-04 TGAGCGCGCG CGTTTTTC TAGCGTTTTC chrIV:7774372-7774452 31 1.85e-04 TGTAGCATTT CACTTCTC AATAGAGCGC chrX:14486597-14486677 30 1.85e-04 TGAACAGGTG CACTTCTC ACCTCCTTCC chrI:10970262-10970342 28 1.85e-04 TTTGTTGGCG CACTTCTC GCGCATGCTG chrIV:13390636-13390716 39 1.85e-04 TCCAATTAAC CTCTTTGC TTCCCGAGTC chrIV:12123048-12123128 56 1.85e-04 CCAAACGCAG CGTttttc tcagtttcct chrII:8716546-8716626 61 1.85e-04 TTTCCCCCGT CTTTTCTC AAATTCAACT chrI:3829422-3829502 72 1.85e-04 TGCATTGCCG CGTTTTTC T chrI:14642637-14642717 65 2.38e-04 GTTTGTATAG CACTTTGC AAGTGCAT chrI:9471305-9471385 58 2.38e-04 TCTATTCGCT CATTTCTC AACGTTCTCA chrII:7816290-7816370 71 2.38e-04 TGGTTTGCCG CATTTCTC GC chrIII:12528161-12528241 18 2.38e-04 TGACGTCTCC CTTTTTGC ACTGAGTCTG chrI:7321653-7321733 7 2.38e-04 GCGGTC CTTTTTGC AATGGAAAGA chrI:4451090-4451170 14 2.38e-04 GCTGCTTCTG CTTTTTGC ATTAGTCCAA chrI:8045102-8045182 33 2.38e-04 CAGCGGGGCG CACTTTGC CCATCTGGAC chrX:5981952-5982032 8 2.56e-04 GCCTGCT CATTTTGC ATGATGTAAG chrI:7466708-7466788 2 2.74e-04 t ctctttcc tCATTCCCAT chrI:3338425-3338505 1 3.09e-04 . CACTTTCC TGCACTCTCT chrI:11131556-11131636 1 3.09e-04 . cTTTTTCC CGCACACCTG chrIV:6294199-6294279 46 3.09e-04 CATTCACCAT CACTTTCC AAGTGTCCAC chrII:13641491-13641571 2 3.27e-04 C CATTTTCC CGCATTTTCA chrX:15600697-15600777 42 3.27e-04 TCTCCCTTCT CATTTTCC CCCCACCATT chrI:3466838-3466918 68 3.48e-04 AGCGCGCTTG CTATTTTC TAAAA chrV:1570830-1570910 10 3.48e-04 GATCCCACA CTATTTTC TGATGTTCTC chrI:3845887-3845967 18 3.68e-04 CAACCTTACT CAATTTTC CATCGACGGG chrIII:13687345-13687425 71 3.68e-04 TTTCTGACGA CAATTTTC CC chrI:10498074-10498154 9 4.29e-04 CACAAATA CTCTTCGC CCCCACCAAT chrX:5179162-5179242 25 4.29e-04 AATGGGGGAA CGCTTTGC ACTGTTGGCC chrV:11993858-11993938 32 4.77e-04 TAGCGGTTGC CGTTTTGC GGACTTTGAC chrIV:11856442-11856522 58 4.77e-04 GTCGTCGAGC CTTTTCGC GGTTTTTTTA chrII:2204249-2204329 34 5.36e-04 CACCGCACAC TTCTTTTC GGCGCGAGGT chrX:12989329-12989409 6 6.26e-04 AATTA CACTTTTT CGTCGTCAAC chrIII:3716205-3716285 51 6.26e-04 GCTTGCTGAC CTTTTTTT TGGGTTTTCG chrIV:15259795-15259875 54 7.22e-04 CTCATCTCTA TATTTTTC AACACAGAGC chrIII:10896002-10896082 63 7.22e-04 TGAGAGAAAT CATTTTTT TGAATTTTAT chrII:386110-386190 73 7.22e-04 TGCGTACTTT TATTTTTC chrII:10172635-10172715 65 7.22e-04 AAATTAAACG TATTTTTC TGATTAAA chrIV:8136275-8136355 64 8.10e-04 CATGCATAGA GACTTTTC CGTGTGCTC chrX:13995979-13996059 55 8.10e-04 AAAATGGCAA GACTTTTC CATCTGCCTT chrII:9169619-9169699 65 8.10e-04 TCAAATTTGG GTTTTTTC TGTTTTCC chrII:8964980-8965060 46 8.10e-04 GCGGCAGTTG CGTTTTCC GTCAGAGCGC chrII:11567473-11567553 4 1.09e-03 CTC CTCTTCTT GGTGCTGCCA chrIV:7982174-7982254 4 1.47e-03 ATG CATTCTTC AAGGGAGGGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CWYTTTTC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:5078200-5078280 1.9e-05 49_[+5]_23 chrX:14491147-14491227 1.9e-05 13_[+5]_59 chrX:954849-954929 1.9e-05 17_[+5]_55 chrX:13669804-13669884 1.9e-05 60_[+5]_12 chrX:10624339-10624419 1.9e-05 3_[+5]_69 chrIV:13453692-13453772 1.9e-05 40_[+5]_32 chrI:10330598-10330678 5.9e-05 56_[+5]_16 chrIII:11565755-11565835 5.9e-05 64_[+5]_8 chrIV:11822608-11822688 5.9e-05 28_[+5]_44 chrX:325793-325873 5.9e-05 34_[+5]_38 chrIII:8737165-8737245 5.9e-05 3_[+5]_69 chrII:5691542-5691622 5.9e-05 62_[+5]_10 chrX:12903815-12903895 5.9e-05 49_[+5]_23 chrII:622640-622720 5.9e-05 37_[+5]_35 chrI:8138679-8138759 5.9e-05 37_[+5]_35 chrIII:5448371-5448451 8e-05 59_[+5]_13 chrI:534296-534376 8e-05 72_[+5] chrX:7565097-7565177 8e-05 13_[+5]_59 chrI:14787901-14787981 0.00011 9_[+5]_63 chrII:6831065-6831145 0.00011 32_[+5]_40 chrIV:10869014-10869094 0.00011 18_[+5]_54 chrIV:3056063-3056143 0.00011 36_[+5]_36 chrIV:8511234-8511314 0.00011 10_[+5]_62 chrII:7664404-7664484 0.00011 21_[+5]_51 chrIV:3351512-3351592 0.00019 3_[+5]_69 chrIV:17118764-17118844 0.00019 47_[+5]_25 chrIV:7774372-7774452 0.00019 30_[+5]_42 chrX:14486597-14486677 0.00019 29_[+5]_43 chrI:10970262-10970342 0.00019 27_[+5]_45 chrIV:13390636-13390716 0.00019 38_[+5]_34 chrIV:12123048-12123128 0.00019 55_[+5]_17 chrII:8716546-8716626 0.00019 60_[+5]_12 chrI:3829422-3829502 0.00019 71_[+5]_1 chrI:14642637-14642717 0.00024 64_[+5]_8 chrI:9471305-9471385 0.00024 57_[+5]_15 chrII:7816290-7816370 0.00024 70_[+5]_2 chrIII:12528161-12528241 0.00024 17_[+5]_55 chrI:7321653-7321733 0.00024 6_[+5]_66 chrI:4451090-4451170 0.00024 13_[+5]_59 chrI:8045102-8045182 0.00024 32_[+5]_40 chrX:5981952-5982032 0.00026 7_[+5]_65 chrI:7466708-7466788 0.00027 1_[+5]_71 chrI:3338425-3338505 0.00031 [+5]_72 chrI:11131556-11131636 0.00031 [+5]_72 chrIV:6294199-6294279 0.00031 45_[+5]_27 chrII:13641491-13641571 0.00033 1_[+5]_71 chrX:15600697-15600777 0.00033 41_[+5]_31 chrI:3466838-3466918 0.00035 67_[+5]_5 chrV:1570830-1570910 0.00035 9_[+5]_63 chrI:3845887-3845967 0.00037 17_[+5]_55 chrIII:13687345-13687425 0.00037 70_[+5]_2 chrI:10498074-10498154 0.00043 8_[+5]_64 chrX:5179162-5179242 0.00043 24_[+5]_48 chrV:11993858-11993938 0.00048 31_[+5]_41 chrIV:11856442-11856522 0.00048 57_[+5]_15 chrII:2204249-2204329 0.00054 33_[+5]_39 chrX:12989329-12989409 0.00063 5_[+5]_67 chrIII:3716205-3716285 0.00063 50_[+5]_22 chrIV:15259795-15259875 0.00072 53_[+5]_19 chrIII:10896002-10896082 0.00072 62_[+5]_10 chrII:386110-386190 0.00072 72_[+5] chrII:10172635-10172715 0.00072 64_[+5]_8 chrIV:8136275-8136355 0.00081 63_[+5]_9 chrX:13995979-13996059 0.00081 54_[+5]_18 chrII:9169619-9169699 0.00081 64_[+5]_8 chrII:8964980-8965060 0.00081 45_[+5]_27 chrII:11567473-11567553 0.0011 3_[+5]_69 chrIV:7982174-7982254 0.0015 3_[+5]_69 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CWYTTTTC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CWYTTTTC width=8 seqs=68 chrIV:5078200-5078280 ( 50) CTCTTTTC 1 chrX:14491147-14491227 ( 14) CTCTTTTC 1 chrX:954849-954929 ( 18) CTCTTTTC 1 chrX:13669804-13669884 ( 61) CTCTTTTC 1 chrX:10624339-10624419 ( 4) CTCTTTTC 1 chrIV:13453692-13453772 ( 41) CTCTTTTC 1 chrI:10330598-10330678 ( 57) CACTTTTC 1 chrIII:11565755-11565835 ( 65) CTTTTTTC 1 chrIV:11822608-11822688 ( 29) CTTTTTTC 1 chrX:325793-325873 ( 35) CTTTTTTC 1 chrIII:8737165-8737245 ( 4) CACTTTTC 1 chrII:5691542-5691622 ( 63) CACTTTTC 1 chrX:12903815-12903895 ( 50) CTTTTTTC 1 chrII:622640-622720 ( 38) CTTTTTTC 1 chrI:8138679-8138759 ( 38) CTTTTTTC 1 chrIII:5448371-5448451 ( 60) CATTTTTC 1 chrI:534296-534376 ( 73) CATTTTTC 1 chrX:7565097-7565177 ( 14) CATTTTTC 1 chrI:14787901-14787981 ( 10) CTCTTCTC 1 chrII:6831065-6831145 ( 33) CTCTTCTC 1 chrIV:10869014-10869094 ( 19) CTCTTCTC 1 chrIV:3056063-3056143 ( 37) CTCTTCTC 1 chrIV:8511234-8511314 ( 11) CGCTTTTC 1 chrII:7664404-7664484 ( 22) CGCTTTTC 1 chrIV:3351512-3351592 ( 4) CTTTTCTC 1 chrIV:17118764-17118844 ( 48) CGTTTTTC 1 chrIV:7774372-7774452 ( 31) CACTTCTC 1 chrX:14486597-14486677 ( 30) CACTTCTC 1 chrI:10970262-10970342 ( 28) CACTTCTC 1 chrIV:13390636-13390716 ( 39) CTCTTTGC 1 chrIV:12123048-12123128 ( 56) CGTTTTTC 1 chrII:8716546-8716626 ( 61) CTTTTCTC 1 chrI:3829422-3829502 ( 72) CGTTTTTC 1 chrI:14642637-14642717 ( 65) CACTTTGC 1 chrI:9471305-9471385 ( 58) CATTTCTC 1 chrII:7816290-7816370 ( 71) CATTTCTC 1 chrIII:12528161-12528241 ( 18) CTTTTTGC 1 chrI:7321653-7321733 ( 7) CTTTTTGC 1 chrI:4451090-4451170 ( 14) CTTTTTGC 1 chrI:8045102-8045182 ( 33) CACTTTGC 1 chrX:5981952-5982032 ( 8) CATTTTGC 1 chrI:7466708-7466788 ( 2) CTCTTTCC 1 chrI:3338425-3338505 ( 1) CACTTTCC 1 chrI:11131556-11131636 ( 1) CTTTTTCC 1 chrIV:6294199-6294279 ( 46) CACTTTCC 1 chrII:13641491-13641571 ( 2) CATTTTCC 1 chrX:15600697-15600777 ( 42) CATTTTCC 1 chrI:3466838-3466918 ( 68) CTATTTTC 1 chrV:1570830-1570910 ( 10) CTATTTTC 1 chrI:3845887-3845967 ( 18) CAATTTTC 1 chrIII:13687345-13687425 ( 71) CAATTTTC 1 chrI:10498074-10498154 ( 9) CTCTTCGC 1 chrX:5179162-5179242 ( 25) CGCTTTGC 1 chrV:11993858-11993938 ( 32) CGTTTTGC 1 chrIV:11856442-11856522 ( 58) CTTTTCGC 1 chrII:2204249-2204329 ( 34) TTCTTTTC 1 chrX:12989329-12989409 ( 6) CACTTTTT 1 chrIII:3716205-3716285 ( 51) CTTTTTTT 1 chrIV:15259795-15259875 ( 54) TATTTTTC 1 chrIII:10896002-10896082 ( 63) CATTTTTT 1 chrII:386110-386190 ( 73) TATTTTTC 1 chrII:10172635-10172715 ( 65) TATTTTTC 1 chrIV:8136275-8136355 ( 64) GACTTTTC 1 chrX:13995979-13996059 ( 55) GACTTTTC 1 chrII:9169619-9169699 ( 65) GTTTTTTC 1 chrII:8964980-8965060 ( 46) CGTTTTCC 1 chrII:11567473-11567553 ( 4) CTCTTCTT 1 chrIV:7982174-7982254 ( 4) CATTCTTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CWYTTTTC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.13256 E= 8.4e-001 -1273 191 -242 -219 68 -1273 -101 81 -212 93 -1273 85 -1273 -1273 -1273 190 -1273 -402 -1273 187 -1273 -22 -1273 156 -1273 -122 -55 145 -1273 198 -1273 -219 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CWYTTTTC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 68 E= 8.4e-001 0.000000 0.897059 0.044118 0.058824 0.411765 0.000000 0.117647 0.470588 0.058824 0.455882 0.000000 0.485294 0.000000 0.000000 0.000000 1.000000 0.000000 0.014706 0.000000 0.985294 0.000000 0.205882 0.000000 0.794118 0.000000 0.102941 0.161765 0.735294 0.000000 0.941176 0.000000 0.058824 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CWYTTTTC MEME-5 regular expression -------------------------------------------------------------------------------- C[TA][TC]TT[TC]TC -------------------------------------------------------------------------------- Time 19.94 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:8138679-8138759 3.73e-02 37_[+5(5.92e-05)]_35 chrV:12897499-12897579 1.43e-02 80 chrII:4640883-4640963 1.55e-01 80 chrI:4242511-4242591 1.32e-01 80 chrIII:6452846-6452926 4.11e-01 80 chrX:8157262-8157342 4.11e-01 80 chrX:9774440-9774520 7.03e-03 80 chrIV:2666272-2666352 2.63e-01 21_[+2(9.36e-05)]_51 chrI:6626898-6626978 1.32e-01 80 chrIV:6294199-6294279 1.68e-01 80 chrI:10374011-10374091 1.99e-03 9_[+1(4.74e-05)]_39_[+3(1.26e-05)]_\ 16 chrIII:3653956-3654036 1.77e-03 28_[+1(2.23e-05)]_44 chrIII:7712093-7712173 4.01e-01 80 chrII:913385-913465 4.19e-05 16_[+4(1.48e-05)]_21_[+1(1.16e-05)]_\ 27 chrIII:13169623-13169703 8.23e-01 80 chrIV:8618889-8618969 3.10e-03 [+3(1.26e-05)]_72 chrIII:6248194-6248274 3.64e-02 59_[+3(3.85e-05)]_13 chrII:10172635-10172715 1.84e-01 80 chrV:10134305-10134385 5.93e-03 30_[+4(5.55e-05)]_26_[+1(8.35e-05)]_\ 8 chrI:3829422-3829502 2.99e-02 80 chrIII:4515308-4515388 3.21e-01 80 chrIII:2126047-2126127 1.27e-01 80 chrIV:13453692-13453772 1.65e-03 24_[+1(2.23e-05)]_8_[+5(1.92e-05)]_\ 32 chrIII:4404493-4404573 1.71e-03 41_[+3(7.90e-05)]_31 chrV:15610567-15610647 2.12e-01 80 chrII:1425496-1425576 5.97e-01 80 chrII:2204249-2204329 4.33e-02 80 chrX:11662764-11662844 7.23e-01 80 chrII:8964980-8965060 9.08e-03 56_[+1(4.74e-05)]_16 chrIV:11856442-11856522 3.96e-01 80 chrIV:3579632-3579712 1.85e-02 22_[+2(2.66e-05)]_50 chrIII:4274737-4274817 1.30e-01 80 chrV:13458008-13458088 3.49e-03 53_[+2(5.39e-05)]_19 chrI:3930567-3930647 9.53e-02 80 chrII:12604418-12604498 6.75e-02 40_[+1(3.48e-05)]_32 chrV:1570830-1570910 1.20e-03 80 chrII:5873884-5873964 5.61e-02 38_[+1(8.35e-05)]_34 chrI:8083387-8083467 1.88e-02 80 chrII:7132047-7132127 5.64e-02 80 chrIII:12894356-12894436 3.63e-01 80 chrII:622640-622720 3.86e-04 37_[+5(5.92e-05)]_2_[+4(1.48e-05)]_\ 25 chrIV:7924241-7924321 1.83e-02 31_[+4(6.85e-05)]_41 chrIII:4332702-4332782 3.51e-04 18_[+3(3.85e-05)]_12_[+2(9.36e-05)]_\ 34 chrV:9930744-9930824 8.76e-01 80 chrI:7553641-7553721 2.12e-01 80 chrV:14597978-14598058 7.98e-01 80 chrX:788128-788208 2.34e-01 80 chrIII:8405574-8405654 1.37e-01 80 chrX:9510096-9510176 3.29e-01 80 chrIV:3136649-3136729 2.05e-02 31_[+2(1.38e-05)]_2_[+2(8.18e-05)]_\ 31 chrX:5981952-5982032 1.53e-01 80 chrIV:7909599-7909679 1.27e-01 19_[+4(4.26e-05)]_53 chrII:9169619-9169699 3.59e-02 28_[+4(4.26e-05)]_44 chrI:9841209-9841289 8.48e-03 80 chrV:1627393-1627473 9.95e-02 80 chrX:15347818-15347898 8.03e-01 80 chrI:13289862-13289942 3.78e-01 80 chrII:8716546-8716626 5.68e-02 80 chrII:7664404-7664484 7.50e-02 80 chrIII:9747312-9747392 8.74e-01 80 chrIII:6019900-6019980 1.78e-03 53_[+4(1.48e-05)]_19 chrX:12903815-12903895 1.70e-01 49_[+5(5.92e-05)]_23 chrI:8045102-8045182 6.85e-03 80 chrI:14523045-14523125 5.73e-04 33_[+2(1.38e-05)]_26_[+4(1.48e-05)]_\ 5 chrV:14498365-14498445 9.36e-01 80 chrI:14496564-14496644 1.20e-02 52_[+2(8.18e-05)]_20 chrX:7100450-7100530 4.80e-02 8_[+1(4.74e-05)]_64 chrI:1701895-1701975 5.40e-02 25_[+4(4.26e-05)]_47 chrII:7781255-7781335 1.14e-01 80 chrX:8791922-8792002 7.18e-01 80 chrIII:8310389-8310469 2.65e-01 80 chrI:4451090-4451170 5.55e-03 32_[+1(8.35e-05)]_40 chrV:3195239-3195319 8.56e-03 80 chrX:10624339-10624419 6.07e-04 3_[+5(1.92e-05)]_23_[+1(1.16e-05)]_\ 38 chrIV:9706850-9706930 9.19e-01 80 chrI:3466838-3466918 3.02e-03 55_[+1(2.23e-05)]_17 chrIII:10248609-10248689 1.12e-02 18_[+1(1.16e-05)]_54 chrI:13812438-13812518 1.91e-02 35_[+1(2.23e-05)]_37 chrX:13669804-13669884 5.61e-03 60_[+5(1.92e-05)]_12 chrI:11131556-11131636 2.46e-03 16_[+4(1.48e-05)]_56 chrIV:12123048-12123128 2.63e-03 32_[+4(9.29e-05)]_40 chrI:8529594-8529674 1.10e-02 33_[+3(3.85e-05)]_39 chrIII:9507931-9508011 6.58e-01 80 chrV:13459457-13459537 9.62e-01 80 chrV:4169785-4169865 3.17e-03 66_[+1(1.16e-05)]_6 chrX:15600697-15600777 1.26e-01 80 chrX:7565097-7565177 8.39e-02 13_[+5(7.98e-05)]_59 chrII:702-782 7.13e-01 80 chrII:5460982-5461062 1.98e-01 80 chrV:17981854-17981934 8.07e-02 26_[+2(1.38e-05)]_46 chrII:5691542-5691622 7.90e-02 62_[+5(5.92e-05)]_10 chrI:10830949-10831029 7.41e-03 58_[+1(1.16e-05)]_14 chrV:14546045-14546125 1.58e-01 80 chrIII:3716205-3716285 8.35e-03 33_[+1(1.16e-05)]_39 chrV:20269908-20269988 1.46e-01 80 chrIII:12178370-12178450 2.63e-01 80 chrIII:3719703-3719783 3.15e-02 70_[+3(1.26e-05)]_2 chrI:7224676-7224756 2.09e-01 80 chrIV:8511234-8511314 3.75e-02 80 chrIV:9107608-9107688 1.45e-01 80 chrIII:6869452-6869532 4.06e-02 24_[+1(8.35e-05)]_48 chrIII:2132238-2132318 5.80e-02 12_[+3(1.26e-05)]_60 chrIII:8737165-8737245 6.13e-02 3_[+5(5.92e-05)]_69 chrI:5422336-5422416 1.07e-01 80 chrIII:7829078-7829158 2.53e-01 80 chrI:12486898-12486978 1.71e-02 31_[+1(2.23e-05)]_41 chrI:1540676-1540756 3.42e-01 80 chrIII:5587088-5587168 1.32e-02 40_[+1(2.23e-05)]_32 chrX:325793-325873 3.13e-03 7_[+2(1.38e-05)]_19_[+5(5.92e-05)]_\ 38 chrII:3119062-3119142 2.96e-01 80 chrX:13995979-13996059 5.88e-02 80 chrX:1529149-1529229 8.69e-02 67_[+3(1.26e-05)]_5 chrX:15508113-15508193 2.23e-04 49_[+1(1.16e-05)]_23 chrX:12989329-12989409 1.08e-02 80 chrV:14177804-14177884 2.58e-03 80 chrII:7615610-7615690 1.24e-01 35_[+4(9.29e-05)]_37 chrIV:3056063-3056143 9.46e-03 26_[+4(1.48e-05)]_46 chrIII:8809700-8809780 8.87e-02 37_[+1(2.23e-05)]_35 chrI:534296-534376 4.47e-02 72_[+5(7.98e-05)] chrII:11694633-11694713 3.47e-02 80 chrIII:1591823-1591903 4.91e-03 72_[+3(1.26e-05)] chrIV:10869014-10869094 1.05e-01 80 chrII:386110-386190 4.42e-02 80 chrII:13694860-13694940 7.13e-03 53_[+2(1.38e-05)]_19 chrIII:13687345-13687425 1.70e-01 80 chrX:3772584-3772664 1.07e-01 9_[+2(1.38e-05)]_63 chrIII:7766140-7766220 1.89e-02 80 chrII:6831065-6831145 1.84e-01 80 chrI:10479034-10479114 4.22e-02 80 chrIII:5988211-5988291 3.91e-01 80 chrX:14589184-14589264 6.75e-03 72_[+1(2.23e-05)] chrII:13036838-13036918 4.58e-02 80 chrV:11993858-11993938 7.28e-02 4_[+4(9.29e-05)]_68 chrIV:11822608-11822688 4.20e-02 28_[+5(5.92e-05)]_44 chrX:15007009-15007089 1.48e-02 12_[+2(1.38e-05)]_60 chrIII:4291412-4291492 1.37e-03 64_[+2(1.38e-05)]_8 chrIV:12451377-12451457 1.10e-01 80 chrI:7321653-7321733 1.52e-04 38_[+4(9.29e-05)]_22_[+3(2.50e-05)]_\ 4 chrIII:11039390-11039470 2.03e-01 80 chrI:3876873-3876953 1.35e-01 67_[+2(8.18e-05)]_5 chrX:16814154-16814234 6.88e-02 34_[+1(1.16e-05)]_38 chrX:15590665-15590745 1.45e-01 80 chrX:10695143-10695223 1.98e-03 42_[+2(1.38e-05)]_30 chrIII:3127811-3127891 1.29e-03 33_[+3(3.85e-05)]_39 chrX:13262051-13262131 7.38e-02 80 chrI:5344428-5344508 3.64e-02 80 chrIII:9528990-9529070 7.56e-01 80 chrV:1236405-1236485 2.40e-02 80 chrV:966316-966396 4.46e-04 14_[+4(1.48e-05)]_58 chrIV:12685964-12686044 4.23e-01 80 chrIII:3510064-3510144 9.11e-05 34_[+3(1.26e-05)]_13_[+2(8.18e-05)]_\ 17 chrX:13221467-13221547 8.03e-01 80 chrI:4320850-4320930 1.93e-01 80 chrIV:13390636-13390716 1.37e-02 2_[+2(8.18e-05)]_70 chrIII:10896002-10896082 1.33e-03 [+2(2.66e-05)]_72 chrV:1575776-1575856 6.24e-01 80 chrI:11930649-11930729 6.30e-01 80 chrIII:5047371-5047451 9.28e-01 80 chrI:3866040-3866120 2.00e-02 15_[+1(2.23e-05)]_57 chrII:11567473-11567553 1.64e-01 80 chrI:5291883-5291963 2.95e-01 80 chrV:10238831-10238911 3.51e-02 80 chrI:6460855-6460935 6.45e-03 30_[+2(1.38e-05)]_42 chrX:4997829-4997909 5.26e-02 80 chrIII:4380968-4381048 9.76e-01 80 chrX:8160186-8160266 4.68e-01 80 chrII:11403333-11403413 2.11e-01 80 chrV:20744434-20744514 3.41e-03 28_[+1(8.35e-05)]_7_[+3(2.50e-05)]_\ 29 chrI:7640094-7640174 2.71e-01 80 chrX:5179162-5179242 5.65e-03 50_[+2(2.66e-05)]_22 chrX:954849-954929 1.17e-01 17_[+5(1.92e-05)]_55 chrX:9213672-9213752 9.16e-03 80 chrX:8159074-8159154 8.61e-02 80 chrI:9501013-9501093 1.24e-02 80 chrIII:9580673-9580753 3.79e-03 7_[+1(4.74e-05)]_65 chrII:11652940-11653020 1.04e-01 80 chrIII:12528161-12528241 4.46e-02 80 chrII:13641491-13641571 3.07e-01 80 chrII:7816290-7816370 2.07e-02 37_[+2(8.18e-05)]_35 chrII:12738945-12739025 1.47e-02 36_[+2(1.38e-05)]_36 chrIV:9263982-9264062 6.13e-03 44_[+2(8.18e-05)]_28 chrI:12904049-12904129 1.12e-01 34_[+2(4.11e-05)]_38 chrV:7854111-7854191 4.86e-04 39_[+3(2.50e-05)]_33 chrI:3845887-3845967 1.79e-01 80 chrI:10970262-10970342 2.71e-01 80 chrIV:14656711-14656791 2.93e-02 61_[+2(1.38e-05)]_11 chrI:2620478-2620558 3.08e-01 80 chrI:3338425-3338505 3.73e-02 80 chrII:10452526-10452606 2.12e-01 80 chrV:12649706-12649786 6.77e-01 80 chrII:6409235-6409315 7.78e-01 80 chrIII:11565755-11565835 3.88e-03 52_[+1(2.23e-05)]_4_[+5(5.92e-05)]_\ 8 chrI:7835631-7835711 4.48e-01 80 chrII:3621018-3621098 7.13e-02 80 chrI:10330598-10330678 5.57e-04 4_[+4(4.26e-05)]_44_[+5(5.92e-05)]_\ 16 chrI:10173198-10173278 2.97e-04 17_[+3(2.50e-05)]_2_[+2(1.38e-05)]_\ 45 chrII:1472448-1472528 5.14e-02 80 chrIII:5698511-5698591 2.20e-02 44_[+3(2.50e-05)]_28 chrI:14897438-14897518 3.47e-02 70_[+2(2.66e-05)]_2 chrIV:8360170-8360250 1.14e-03 30_[+3(1.26e-05)]_17_[+1(8.35e-05)]_\ 17 chrI:3438921-3439001 6.94e-01 80 chrX:11369165-11369245 4.25e-01 80 chrIII:8899863-8899943 1.26e-02 30_[+4(6.85e-05)]_42 chrIII:2698900-2698980 4.01e-03 80 chrX:14486597-14486677 3.67e-01 80 chrIII:13768233-13768313 4.27e-01 80 chrX:14491147-14491227 7.94e-02 13_[+5(1.92e-05)]_59 chrI:3228086-3228166 3.59e-04 4_[+1(2.23e-05)]_12_[+4(1.48e-05)]_\ 48 chrIV:9858250-9858330 1.13e-02 45_[+2(2.66e-05)]_27 chrI:8692604-8692684 2.50e-03 28_[+2(1.38e-05)]_44 chrIV:7774372-7774452 4.98e-04 41_[+1(1.16e-05)]_31 chrV:11733642-11733722 6.30e-03 42_[+1(2.23e-05)]_30 chrIV:15573994-15574074 8.13e-02 80 chrI:10772400-10772480 1.23e-01 80 chrIII:1962290-1962370 6.11e-01 80 chrI:14647592-14647672 1.53e-03 35_[+3(1.26e-05)]_26_[+4(9.29e-05)]_\ 3 chrIII:4878423-4878503 7.36e-02 51_[+1(9.56e-05)]_21 chrI:7466708-7466788 5.06e-03 42_[+1(8.35e-05)]_30 chrV:8784457-8784537 5.98e-01 80 chrII:6522807-6522887 6.60e-01 80 chrIV:7982174-7982254 1.94e-03 36_[+4(6.85e-05)]_36 chrIV:7561903-7561983 5.62e-02 80 chrIV:15259795-15259875 4.94e-02 80 chrII:5907670-5907750 8.65e-01 80 chrII:4672744-4672824 4.31e-01 80 chrX:924638-924718 1.25e-02 80 chrIII:434511-434591 3.11e-03 37_[+3(7.90e-05)]_35 chrIII:5448371-5448451 2.60e-03 24_[+2(2.66e-05)]_27_[+5(7.98e-05)]_\ 13 chrI:14646696-14646776 5.76e-01 80 chrI:9471305-9471385 1.56e-01 80 chrV:11896633-11896713 2.86e-03 40_[+1(5.88e-05)]_32 chrI:14642637-14642717 4.10e-04 47_[+1(1.16e-05)]_25 chrII:10100079-10100159 1.27e-02 80 chrI:6073644-6073724 3.62e-02 80 chrI:4299651-4299731 4.27e-02 33_[+3(1.26e-05)]_39 chrX:4869710-4869790 7.89e-02 80 chrX:5086266-5086346 2.30e-03 17_[+3(7.90e-05)]_55 chrII:8602491-8602571 6.11e-02 25_[+4(4.26e-05)]_47 chrIV:17333683-17333763 1.93e-03 22_[+3(1.26e-05)]_50 chrIV:8136275-8136355 1.98e-02 18_[+4(9.29e-05)]_54 chrIV:17118764-17118844 2.39e-02 80 chrI:10498074-10498154 1.14e-02 80 chrII:13012616-13012696 8.81e-02 80 chrII:7374302-7374382 1.25e-01 80 chrIV:5078200-5078280 6.03e-03 49_[+5(1.92e-05)]_23 chrII:10504896-10504976 3.30e-02 18_[+1(5.88e-05)]_54 chrI:3192768-3192848 4.14e-03 7_[+1(2.23e-05)]_65 chrI:14787901-14787981 1.58e-04 33_[+1(1.16e-05)]_39 chrI:8416268-8416348 6.20e-04 34_[+4(1.48e-05)]_11_[+2(2.66e-05)]_\ 19 chrIV:3351512-3351592 7.33e-04 11_[+4(1.48e-05)]_61 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c17n09.farnam.hpc.yale.internal ********************************************************************************