******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/worm/fasta/RankLinear2.0_40/mel-28.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrX:17288557-17288637 1.0000 80 chrIV:15059344-15059424 1.0000 80 chrIV:3748180-3748260 1.0000 80 chrIV:13668286-13668366 1.0000 80 chrI:8866816-8866896 1.0000 80 chrIV:3743676-3743756 1.0000 80 chrM:3286-3366 1.0000 80 chrV:5838869-5838949 1.0000 80 chrM:8516-8596 1.0000 80 chrII:12058411-12058491 1.0000 80 chrM:10061-10141 1.0000 80 chrV:13907778-13907858 1.0000 80 chrX:1503936-1504016 1.0000 80 chrM:3590-3670 1.0000 80 chrII:10450539-10450619 1.0000 80 chrM:2977-3057 1.0000 80 chrIII:4096674-4096754 1.0000 80 chrM:10269-10349 1.0000 80 chrI:7869003-7869083 1.0000 80 chrI:8135119-8135199 1.0000 80 chrIII:13722367-13722447 1.0000 80 chrII:10543357-10543437 1.0000 80 chrV:10238230-10238310 1.0000 80 chrM:8212-8292 1.0000 80 chrI:7656712-7656792 1.0000 80 chrII:6559067-6559147 1.0000 80 chrM:10837-10917 1.0000 80 chrIII:3869305-3869385 1.0000 80 chrII:12795398-12795478 1.0000 80 chrII:12057061-12057141 1.0000 80 chrM:980-1060 1.0000 80 chrM:6024-6104 1.0000 80 chrX:6253977-6254057 1.0000 80 chrIV:8226691-8226771 1.0000 80 chrIII:12686745-12686825 1.0000 80 chrI:6093408-6093488 1.0000 80 chrM:7152-7232 1.0000 80 chrM:9092-9172 1.0000 80 chrIII:9462954-9463034 1.0000 80 chrI:13576093-13576173 1.0000 80 chrI:7658247-7658327 1.0000 80 chrIII:12598960-12599040 1.0000 80 chrM:2108-2188 1.0000 80 chrI:4177441-4177521 1.0000 80 chrX:2971081-2971161 1.0000 80 chrII:10302860-10302940 1.0000 80 chrM:4669-4749 1.0000 80 chrV:1158439-1158519 1.0000 80 chrM:1209-1289 1.0000 80 chrM:4870-4950 1.0000 80 chrM:11036-11116 1.0000 80 chrIII:10711348-10711428 1.0000 80 chrIII:5550839-5550919 1.0000 80 chrM:12415-12495 1.0000 80 chrIII:5943888-5943968 1.0000 80 chrI:6094526-6094606 1.0000 80 chrM:2320-2400 1.0000 80 chrV:10712358-10712438 1.0000 80 chrIII:3736868-3736948 1.0000 80 chrII:6346678-6346758 1.0000 80 chrI:4573683-4573763 1.0000 80 chrIV:2607897-2607977 1.0000 80 chrV:15321113-15321193 1.0000 80 chrII:14256004-14256084 1.0000 80 chrIII:9051382-9051462 1.0000 80 chrV:5842756-5842836 1.0000 80 chrII:12671494-12671574 1.0000 80 chrIV:3636762-3636842 1.0000 80 chrM:6244-6324 1.0000 80 chrIV:2709771-2709851 1.0000 80 chrI:14651188-14651268 1.0000 80 chrX:5106339-5106419 1.0000 80 chrV:6098888-6098968 1.0000 80 chrV:265120-265200 1.0000 80 chrV:10712010-10712090 1.0000 80 chrV:14354395-14354475 1.0000 80 chrI:7079805-7079885 1.0000 80 chrIII:5025154-5025234 1.0000 80 chrX:2058948-2059028 1.0000 80 chrIII:11694682-11694762 1.0000 80 chrI:2318204-2318284 1.0000 80 chrIV:8790977-8791057 1.0000 80 chrV:8228902-8228982 1.0000 80 chrI:3940-4020 1.0000 80 chrIV:15900371-15900451 1.0000 80 chrIII:4195538-4195618 1.0000 80 chrX:13108858-13108938 1.0000 80 chrIII:6415533-6415613 1.0000 80 chrIII:10621425-10621505 1.0000 80 chrV:9340516-9340596 1.0000 80 chrIII:5939948-5940028 1.0000 80 chrI:378876-378956 1.0000 80 chrIII:12607375-12607455 1.0000 80 chrII:11814030-11814110 1.0000 80 chrV:5840937-5841017 1.0000 80 chrIV:3336774-3336854 1.0000 80 chrIV:10737085-10737165 1.0000 80 chrI:11579708-11579788 1.0000 80 chrX:15076430-15076510 1.0000 80 chrV:17857993-17858073 1.0000 80 chrII:10542204-10542284 1.0000 80 chrV:7848484-7848564 1.0000 80 chrIII:11463861-11463941 1.0000 80 chrIII:835887-835967 1.0000 80 chrIII:11792913-11792993 1.0000 80 chrV:5917855-5917935 1.0000 80 chrI:13470436-13470516 1.0000 80 chrII:9285331-9285411 1.0000 80 chrI:7083060-7083140 1.0000 80 chrI:7079559-7079639 1.0000 80 chrIV:17281388-17281468 1.0000 80 chrX:6744031-6744111 1.0000 80 chrIII:3324091-3324171 1.0000 80 chrI:7872290-7872370 1.0000 80 chrI:1958541-1958621 1.0000 80 chrIV:10933981-10934061 1.0000 80 chrX:13164356-13164436 1.0000 80 chrI:461697-461777 1.0000 80 chrIII:1419985-1420065 1.0000 80 chrIV:15646638-15646718 1.0000 80 chrIII:11066913-11066993 1.0000 80 chrII:3077074-3077154 1.0000 80 chrIII:783402-783482 1.0000 80 chrIII:8974924-8975004 1.0000 80 chrIV:2602138-2602218 1.0000 80 chrI:2410082-2410162 1.0000 80 chrII:13199862-13199942 1.0000 80 chrX:1858772-1858852 1.0000 80 chrII:11376784-11376864 1.0000 80 chrIV:991276-991356 1.0000 80 chrIII:10624787-10624867 1.0000 80 chrV:15085572-15085652 1.0000 80 chrIII:9053967-9054047 1.0000 80 chrI:13310407-13310487 1.0000 80 chrI:10197097-10197177 1.0000 80 chrIII:12250681-12250761 1.0000 80 chrIV:6336897-6336977 1.0000 80 chrII:2889348-2889428 1.0000 80 chrI:7969038-7969118 1.0000 80 chrV:7854706-7854786 1.0000 80 chrIII:10407344-10407424 1.0000 80 chrIV:4469932-4470012 1.0000 80 chrIII:349925-350005 1.0000 80 chrIV:51321-51401 1.0000 80 chrII:11547413-11547493 1.0000 80 chrII:11759433-11759513 1.0000 80 chrI:4536050-4536130 1.0000 80 chrX:15200943-15201023 1.0000 80 chrIII:8653022-8653102 1.0000 80 chrIV:11026143-11026223 1.0000 80 chrIII:12617065-12617145 1.0000 80 chrX:16930183-16930263 1.0000 80 chrX:5022899-5022979 1.0000 80 chrIV:15570935-15571015 1.0000 80 chrII:12541782-12541862 1.0000 80 chrX:8971544-8971624 1.0000 80 chrII:8747446-8747526 1.0000 80 chrI:14058895-14058975 1.0000 80 chrI:11374431-11374511 1.0000 80 chrII:12102522-12102602 1.0000 80 chrX:11935160-11935240 1.0000 80 chrIII:11090357-11090437 1.0000 80 chrI:13663365-13663445 1.0000 80 chrV:17951294-17951374 1.0000 80 chrIII:4369523-4369603 1.0000 80 chrIV:1745741-1745821 1.0000 80 chrIV:4049659-4049739 1.0000 80 chrIV:11082880-11082960 1.0000 80 chrIV:8252965-8253045 1.0000 80 chrII:15025916-15025996 1.0000 80 chrX:1319897-1319977 1.0000 80 chrV:16356123-16356203 1.0000 80 chrX:12890190-12890270 1.0000 80 chrIII:13464685-13464765 1.0000 80 chrX:16929980-16930060 1.0000 80 chrV:18967788-18967868 1.0000 80 chrX:12363126-12363206 1.0000 80 chrI:3824421-3824501 1.0000 80 chrIII:10214625-10214705 1.0000 80 chrV:15551791-15551871 1.0000 80 chrX:1909533-1909613 1.0000 80 chrX:4142456-4142536 1.0000 80 chrII:14251494-14251574 1.0000 80 chrIV:2219596-2219676 1.0000 80 chrI:2084962-2085042 1.0000 80 chrIII:1424481-1424561 1.0000 80 chrV:7237298-7237378 1.0000 80 chrIV:1094309-1094389 1.0000 80 chrI:14469307-14469387 1.0000 80 chrX:16056561-16056641 1.0000 80 chrI:882783-882863 1.0000 80 chrX:10963767-10963847 1.0000 80 chrV:15511746-15511826 1.0000 80 chrIV:16492417-16492497 1.0000 80 chrIV:6556750-6556830 1.0000 80 chrI:12652242-12652322 1.0000 80 chrI:5176391-5176471 1.0000 80 chrIII:502722-502802 1.0000 80 chrII:14561786-14561866 1.0000 80 chrI:8816544-8816624 1.0000 80 chrIII:9630036-9630116 1.0000 80 chrX:11095606-11095686 1.0000 80 chrIV:2389126-2389206 1.0000 80 chrI:16962-17042 1.0000 80 chrI:1068377-1068457 1.0000 80 chrX:1344983-1345063 1.0000 80 chrI:2514269-2514349 1.0000 80 chrIV:17249875-17249955 1.0000 80 chrI:8133954-8134034 1.0000 80 chrX:3970068-3970148 1.0000 80 chrIII:13463061-13463141 1.0000 80 chrI:1447048-1447128 1.0000 80 chrX:8811060-8811140 1.0000 80 chrIII:836089-836169 1.0000 80 chrX:3697753-3697833 1.0000 80 chrI:536828-536908 1.0000 80 chrX:12106190-12106270 1.0000 80 chrX:489888-489968 1.0000 80 chrI:11182437-11182517 1.0000 80 chrI:12815879-12815959 1.0000 80 chrII:11545444-11545524 1.0000 80 chrIV:13240686-13240766 1.0000 80 chrI:11323297-11323377 1.0000 80 chrII:10868927-10869007 1.0000 80 chrIII:10461282-10461362 1.0000 80 chrI:11930138-11930218 1.0000 80 chrI:9619922-9620002 1.0000 80 chrIII:6464374-6464454 1.0000 80 chrIV:4727994-4728074 1.0000 80 chrV:16370155-16370235 1.0000 80 chrIV:4390618-4390698 1.0000 80 chrIV:9477769-9477849 1.0000 80 chrI:5706966-5707046 1.0000 80 chrII:8547090-8547170 1.0000 80 chrV:12780412-12780492 1.0000 80 chrI:3721696-3721776 1.0000 80 chrIII:3456355-3456435 1.0000 80 chrV:1868708-1868788 1.0000 80 chrIV:14033923-14034003 1.0000 80 chrX:12563796-12563876 1.0000 80 chrII:2974028-2974108 1.0000 80 chrIII:13643655-13643735 1.0000 80 chrV:15191058-15191138 1.0000 80 chrII:14040352-14040432 1.0000 80 chrV:7060501-7060581 1.0000 80 chrIII:354989-355069 1.0000 80 chrIII:12905154-12905234 1.0000 80 chrI:2639738-2639818 1.0000 80 chrII:9566263-9566343 1.0000 80 chrX:2613324-2613404 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/worm/inference_raw/MEME/RankLinear2.0_40_mel-28/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/worm/fasta/RankLinear2.0_40/mel-28.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.278 C 0.217 G 0.233 T 0.272 Background letter frequencies (from file dataset with add-one prior applied): A 0.278 C 0.217 G 0.233 T 0.272 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF SGCGYCGC MEME-1 width = 8 sites = 22 llr = 200 E-value = 2.1e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif SGCGYCGC MEME-1 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C 61a:58:a probability G 46:a:2a: matrix T :3::5::: bits 2.2 ** ** 2.0 ** ** 1.8 ** ** 1.5 ** *** Relative 1.3 * ** *** Entropy 1.1 * ****** (13.1 bits) 0.9 * ****** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CGCGCCGC consensus GT T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SGCGYCGC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrII:14251494-14251574 58 6.09e-06 TCTCTCGTTT CGCGCCGC GTGATTTGGG chrV:16356123-16356203 23 6.09e-06 GAACTCTGCT CGCGCCGC TCACAAACGG chrIII:6464374-6464454 13 1.37e-05 GCTGCACAGC CGCGTCGC ACGCGACCCG chrI:9619922-9620002 31 1.37e-05 AAAGTGTGTG CGCGTCGC GGTTTTCGCG chrX:8811060-8811140 50 1.37e-05 CCTCTCCCTG CGCGTCGC GTGTTCAGAC chrIV:3636762-3636842 24 1.37e-05 CTGTTTTTGA CGCGTCGC GCCCTCCGCC chrI:882783-882863 39 2.03e-05 GCAATGTCTC GGCGCCGC CGCcgtcgtc chrI:14058895-14058975 12 2.03e-05 TCTTCATTGA GGCGCCGC CATTGTTTCT chrII:15025916-15025996 10 2.84e-05 TAGAAGCGT GGCGTCGC GGCTAGTTCC chrII:14040352-14040432 24 3.55e-05 ACTTTTCTTC CTCGCCGC ACTTCTTCAG chrII:10868927-10869007 12 3.55e-05 GCTCGCGGGT CTCGCCGC GATTTGCCGA chrIV:1094309-1094389 22 5.01e-05 GCTGGCGGGT CCCGCCGC GATTTGCCGC chrII:3077074-3077154 39 5.01e-05 CCACGATTTG CCCGCCGC TGTGTCACGG chrIII:10461282-10461362 16 7.14e-05 GTGTAAAATG CGCGCGGC ACACTTGCGA chrIII:502722-502802 30 7.14e-05 AGTGGTTGTG GTCGCCGC CTCGGTTTGG chrIV:4469932-4470012 9 7.14e-05 ATACCCGG CCCGTCGC CTTCCATGTC chrI:7083060-7083140 56 7.14e-05 TAGTTGCGTC GTCGCCGC ACGGGACAAA chrIII:13643655-13643735 23 8.91e-05 TCCGCAATCT CGCGTGGC ATTCGGTGTA chrI:11182437-11182517 73 8.91e-05 AAAACGCAGC GTCGTCGC chrII:2889348-2889428 52 8.91e-05 TGGAGAATCG GTCGTCGC GGCCACGGAG chrI:13470436-13470516 27 8.91e-05 TTGGAAAACG CGCGTGGC CGCGAGGGGG chrI:11374431-11374511 19 1.19e-04 AGTACACGCT GGCGTGGC CGAGCACATC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SGCGYCGC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:14251494-14251574 6.1e-06 57_[+1]_15 chrV:16356123-16356203 6.1e-06 22_[+1]_50 chrIII:6464374-6464454 1.4e-05 12_[+1]_60 chrI:9619922-9620002 1.4e-05 30_[+1]_42 chrX:8811060-8811140 1.4e-05 49_[+1]_23 chrIV:3636762-3636842 1.4e-05 23_[+1]_49 chrI:882783-882863 2e-05 38_[+1]_34 chrI:14058895-14058975 2e-05 11_[+1]_61 chrII:15025916-15025996 2.8e-05 9_[+1]_63 chrII:14040352-14040432 3.6e-05 23_[+1]_49 chrII:10868927-10869007 3.6e-05 11_[+1]_61 chrIV:1094309-1094389 5e-05 21_[+1]_51 chrII:3077074-3077154 5e-05 38_[+1]_34 chrIII:10461282-10461362 7.1e-05 15_[+1]_57 chrIII:502722-502802 7.1e-05 29_[+1]_43 chrIV:4469932-4470012 7.1e-05 8_[+1]_64 chrI:7083060-7083140 7.1e-05 55_[+1]_17 chrIII:13643655-13643735 8.9e-05 22_[+1]_50 chrI:11182437-11182517 8.9e-05 72_[+1] chrII:2889348-2889428 8.9e-05 51_[+1]_21 chrI:13470436-13470516 8.9e-05 26_[+1]_46 chrI:11374431-11374511 0.00012 18_[+1]_54 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SGCGYCGC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF SGCGYCGC width=8 seqs=22 chrII:14251494-14251574 ( 58) CGCGCCGC 1 chrV:16356123-16356203 ( 23) CGCGCCGC 1 chrIII:6464374-6464454 ( 13) CGCGTCGC 1 chrI:9619922-9620002 ( 31) CGCGTCGC 1 chrX:8811060-8811140 ( 50) CGCGTCGC 1 chrIV:3636762-3636842 ( 24) CGCGTCGC 1 chrI:882783-882863 ( 39) GGCGCCGC 1 chrI:14058895-14058975 ( 12) GGCGCCGC 1 chrII:15025916-15025996 ( 10) GGCGTCGC 1 chrII:14040352-14040432 ( 24) CTCGCCGC 1 chrII:10868927-10869007 ( 12) CTCGCCGC 1 chrIV:1094309-1094389 ( 22) CCCGCCGC 1 chrII:3077074-3077154 ( 39) CCCGCCGC 1 chrIII:10461282-10461362 ( 16) CGCGCGGC 1 chrIII:502722-502802 ( 30) GTCGCCGC 1 chrIV:4469932-4470012 ( 9) CCCGTCGC 1 chrI:7083060-7083140 ( 56) GTCGCCGC 1 chrIII:13643655-13643735 ( 23) CGCGTGGC 1 chrI:11182437-11182517 ( 73) GTCGTCGC 1 chrII:2889348-2889428 ( 52) GTCGTCGC 1 chrI:13470436-13470516 ( 27) CGCGTGGC 1 chrI:11374431-11374511 ( 19) GGCGTGGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SGCGYCGC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.5702 E= 2.1e+000 -1110 155 64 -1110 -1110 -67 134 0 -1110 221 -1110 -1110 -1110 -1110 210 -1110 -1110 121 -1110 88 -1110 192 -36 -1110 -1110 -1110 210 -1110 -1110 221 -1110 -1110 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SGCGYCGC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 22 E= 2.1e+000 0.000000 0.636364 0.363636 0.000000 0.000000 0.136364 0.590909 0.272727 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.500000 0.000000 0.500000 0.000000 0.818182 0.181818 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SGCGYCGC MEME-1 regular expression -------------------------------------------------------------------------------- [CG][GT]CG[CT]CGC -------------------------------------------------------------------------------- Time 8.16 secs. ******************************************************************************** ******************************************************************************** MOTIF CGGCCGVC MEME-2 width = 8 sites = 19 llr = 176 E-value = 5.3e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif CGGCCGVC MEME-2 Description -------------------------------------------------------------------------------- Simplified A ::::::3: pos.-specific C a::79:47 probability G :aa31a33 matrix T :::::::: bits 2.2 *** * 2.0 *** * 1.8 *** ** 1.5 *** ** Relative 1.3 ****** * Entropy 1.1 ****** * (13.4 bits) 0.9 ****** * 0.7 ****** * 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CGGCCGCC consensus G AG sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGCCGVC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrI:13310407-13310487 58 6.09e-06 AGGGAGCGGG CGGCCGCC AGTGTGTTGG chrI:461697-461777 50 6.09e-06 AACATCTCCG CGGCCGCC CAGTGGTGTA chrI:2084962-2085042 31 1.26e-05 CGCGAGGTGT CGGCCGGC GCGTAAAAGT chrIII:12905154-12905234 42 2.04e-05 ATCAACAGAG CGGCCGAC AAGTGACGCA chrII:11545444-11545524 16 2.04e-05 TGCGCTCCAC CGGCCGAC GGAAGATCGA chrI:14058895-14058975 53 2.04e-05 CTCAGCGCGG CGGCCGAC AGTTTGCGGG chrII:11759433-11759513 39 2.04e-05 GAGAAAGAGA CGGCCGAC AGAAGAGACA chrI:2639738-2639818 44 3.35e-05 CCGAGCTTTC CGGGCGCc acggtagcac chrIII:11066913-11066993 2 3.35e-05 T CGGCCGCG AAACTTTGCT chrM:2320-2400 7 3.35e-05 CTTAAC CGGGCGCC ATTTGATTTT chrX:12106190-12106270 25 4.75e-05 CTGAGCTAAC CGGGCGGC AATGGCATTA chrI:2514269-2514349 62 4.75e-05 CGTGGTGTTG CGGGCGGC AGGCGAACGT chrV:15551791-15551871 13 4.75e-05 AGATTCTCCC cggccggg aattgaaccc chrII:3077074-3077154 16 4.75e-05 TTTCAAAATG CGGCCGGG TCTCGCCACG chrI:11579708-11579788 66 4.75e-05 CTGAGCTAAC CGGGCGGC GATCACA chrX:11935160-11935240 51 6.43e-05 AGGAGTGGGG CGGCCGAG TGAGGCCACT chrII:2889348-2889428 7 6.43e-05 TTAACG CGGCCGAG AAATCGATTT chrX:1319897-1319977 38 7.78e-05 TGCGTCTCTT CGGCGGCC AGCGGCCCCT chrI:1958541-1958621 31 7.78e-05 CAACGGTGTG CGGCGGCC TTGCAGTTGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGCCGVC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:13310407-13310487 6.1e-06 57_[+2]_15 chrI:461697-461777 6.1e-06 49_[+2]_23 chrI:2084962-2085042 1.3e-05 30_[+2]_42 chrIII:12905154-12905234 2e-05 41_[+2]_31 chrII:11545444-11545524 2e-05 15_[+2]_57 chrI:14058895-14058975 2e-05 52_[+2]_20 chrII:11759433-11759513 2e-05 38_[+2]_34 chrI:2639738-2639818 3.3e-05 43_[+2]_29 chrIII:11066913-11066993 3.3e-05 1_[+2]_71 chrM:2320-2400 3.3e-05 6_[+2]_66 chrX:12106190-12106270 4.8e-05 24_[+2]_48 chrI:2514269-2514349 4.8e-05 61_[+2]_11 chrV:15551791-15551871 4.8e-05 12_[+2]_60 chrII:3077074-3077154 4.8e-05 15_[+2]_57 chrI:11579708-11579788 4.8e-05 65_[+2]_7 chrX:11935160-11935240 6.4e-05 50_[+2]_22 chrII:2889348-2889428 6.4e-05 6_[+2]_66 chrX:1319897-1319977 7.8e-05 37_[+2]_35 chrI:1958541-1958621 7.8e-05 30_[+2]_42 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGCCGVC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CGGCCGVC width=8 seqs=19 chrI:13310407-13310487 ( 58) CGGCCGCC 1 chrI:461697-461777 ( 50) CGGCCGCC 1 chrI:2084962-2085042 ( 31) CGGCCGGC 1 chrIII:12905154-12905234 ( 42) CGGCCGAC 1 chrII:11545444-11545524 ( 16) CGGCCGAC 1 chrI:14058895-14058975 ( 53) CGGCCGAC 1 chrII:11759433-11759513 ( 39) CGGCCGAC 1 chrI:2639738-2639818 ( 44) CGGGCGCC 1 chrIII:11066913-11066993 ( 2) CGGCCGCG 1 chrM:2320-2400 ( 7) CGGGCGCC 1 chrX:12106190-12106270 ( 25) CGGGCGGC 1 chrI:2514269-2514349 ( 62) CGGGCGGC 1 chrV:15551791-15551871 ( 13) CGGCCGGG 1 chrII:3077074-3077154 ( 16) CGGCCGGG 1 chrI:11579708-11579788 ( 66) CGGGCGGC 1 chrX:11935160-11935240 ( 51) CGGCCGAG 1 chrII:2889348-2889428 ( 7) CGGCCGAG 1 chrX:1319897-1319977 ( 38) CGGCGGCC 1 chrI:1958541-1958621 ( 31) CGGCGGCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGCCGVC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.3477 E= 5.3e+000 -1089 220 -1089 -1089 -1089 -1089 210 -1089 -1089 -1089 210 -1089 -1089 176 18 -1089 -1089 204 -114 -1089 -1089 -1089 210 -1089 18 76 44 -1089 -1089 176 18 -1089 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGCCGVC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 19 E= 5.3e+000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.736842 0.263158 0.000000 0.000000 0.894737 0.105263 0.000000 0.000000 0.000000 1.000000 0.000000 0.315789 0.368421 0.315789 0.000000 0.000000 0.736842 0.263158 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGCCGVC MEME-2 regular expression -------------------------------------------------------------------------------- CGG[CG]CG[CAG][CG] -------------------------------------------------------------------------------- Time 11.92 secs. ******************************************************************************** ******************************************************************************** MOTIF TGTGCGSC MEME-3 width = 8 sites = 8 llr = 87 E-value = 6.6e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGTGCGSC MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C ::::a:4a probability G :a:a:a6: matrix T a:a::::: bits 2.2 * *** * 2.0 ****** * 1.8 ****** * 1.5 ****** * Relative 1.3 ****** * Entropy 1.1 ******** (15.7 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TGTGCGGC consensus C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGCGSC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIV:4390618-4390698 48 1.03e-05 TAGCGAAATG TGTGCGGC AGGGCGCACA chrIII:10461282-10461362 39 1.03e-05 TGCGAAACCC TGTGCGGC GCACTTGCAT chrI:11323297-11323377 62 1.03e-05 ATGTCAAGTG TGTGCGGC GGTTTGCAAA chrII:14251494-14251574 26 1.03e-05 TGAACACAAA TGTGCGGC CACTCGATTT chrI:1958541-1958621 4 1.03e-05 TTG TGTGCGGC GGTGTTGCGC chrI:5706966-5707046 36 1.98e-05 GCCGAGTGGT TGTGCGCC CGGTCAGTGT chrI:3940-4020 50 1.98e-05 CTGTCTGTTG TGTGCGCC GCGACTCCGC chrI:6094526-6094606 53 1.98e-05 aatttgaaag tgtgcgcc tttaaggagt -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGCGSC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:4390618-4390698 1e-05 47_[+3]_25 chrIII:10461282-10461362 1e-05 38_[+3]_34 chrI:11323297-11323377 1e-05 61_[+3]_11 chrII:14251494-14251574 1e-05 25_[+3]_47 chrI:1958541-1958621 1e-05 3_[+3]_69 chrI:5706966-5707046 2e-05 35_[+3]_37 chrI:3940-4020 2e-05 49_[+3]_23 chrI:6094526-6094606 2e-05 52_[+3]_20 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGCGSC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGTGCGSC width=8 seqs=8 chrIV:4390618-4390698 ( 48) TGTGCGGC 1 chrIII:10461282-10461362 ( 39) TGTGCGGC 1 chrI:11323297-11323377 ( 62) TGTGCGGC 1 chrII:14251494-14251574 ( 26) TGTGCGGC 1 chrI:1958541-1958621 ( 4) TGTGCGGC 1 chrI:5706966-5707046 ( 36) TGTGCGCC 1 chrI:3940-4020 ( 50) TGTGCGCC 1 chrI:6094526-6094606 ( 53) TGTGCGCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGCGSC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.3065 E= 6.6e+002 -965 -965 -965 187 -965 -965 210 -965 -965 -965 -965 187 -965 -965 210 -965 -965 220 -965 -965 -965 -965 210 -965 -965 79 142 -965 -965 220 -965 -965 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGCGSC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 8 E= 6.6e+002 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.375000 0.625000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGCGSC MEME-3 regular expression -------------------------------------------------------------------------------- TGTGCG[GC]C -------------------------------------------------------------------------------- Time 15.59 secs. ******************************************************************************** ******************************************************************************** MOTIF GGGTCTCG MEME-4 width = 8 sites = 6 llr = 69 E-value = 1.2e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGGTCTCG MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C ::::a:a: probability G aaa::::a matrix T :::a:a:: bits 2.2 *** * ** 2.0 ******** 1.8 ******** 1.5 ******** Relative 1.3 ******** Entropy 1.1 ******** (16.6 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GGGTCTCG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGTCTCG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrI:9619922-9620002 54 1.03e-05 TCGCGGGGAG GGGTCTCG CAACGATTTG chrX:489888-489968 3 1.03e-05 CC GGGTCTCG CATGTGACAG chrV:15511746-15511826 44 1.03e-05 ttacattgct gggtctcg gcacgcTCAC chrV:15551791-15551871 31 1.03e-05 aattgaaccc gggtctcg catgtgacag chrI:7083060-7083140 31 1.03e-05 ATCGAGCGCC GGGTCTCG TTTTCTCTAG chrI:6094526-6094606 17 1.03e-05 atacactagc gggtctcg acatgatcaa -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGTCTCG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:9619922-9620002 1e-05 53_[+4]_19 chrX:489888-489968 1e-05 2_[+4]_70 chrV:15511746-15511826 1e-05 43_[+4]_29 chrV:15551791-15551871 1e-05 30_[+4]_42 chrI:7083060-7083140 1e-05 30_[+4]_42 chrI:6094526-6094606 1e-05 16_[+4]_56 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGTCTCG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGGTCTCG width=8 seqs=6 chrI:9619922-9620002 ( 54) GGGTCTCG 1 chrX:489888-489968 ( 3) GGGTCTCG 1 chrV:15511746-15511826 ( 44) GGGTCTCG 1 chrV:15551791-15551871 ( 31) GGGTCTCG 1 chrI:7083060-7083140 ( 31) GGGTCTCG 1 chrI:6094526-6094606 ( 17) GGGTCTCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGTCTCG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.229 E= 1.2e+003 -923 -923 210 -923 -923 -923 210 -923 -923 -923 210 -923 -923 -923 -923 187 -923 220 -923 -923 -923 -923 -923 187 -923 220 -923 -923 -923 -923 210 -923 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGTCTCG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 1.2e+003 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGTCTCG MEME-4 regular expression -------------------------------------------------------------------------------- GGGTCTCG -------------------------------------------------------------------------------- Time 19.25 secs. ******************************************************************************** ******************************************************************************** MOTIF STCCKCYC MEME-5 width = 8 sites = 13 llr = 126 E-value = 4.5e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif STCCKCYC MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C 6:aa:a5a probability G 4:::4::: matrix T :a::6:5: bits 2.2 ** * * 2.0 *** * * 1.8 *** * * 1.5 *** * * Relative 1.3 *** * * Entropy 1.1 ******** (14.0 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CTCCTCCC consensus G G T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif STCCKCYC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrI:7079805-7079885 34 7.72e-06 ATGAGAAACT CTCCTCCC CGTCATCTTT chrI:11374431-11374511 49 2.40e-05 CGGCCGTGTA CTCCTCTC GGACAACGCA chrI:461697-461777 68 2.40e-05 CAGTGGTGTA CTCCTCTC GGGTG chrV:7848484-7848564 57 2.40e-05 TTTGCCCGCT CTCCGCCC CGGGTCGTCA chrI:3940-4020 62 2.40e-05 TGCGCCGCGA CTCCGCCC ACCGGTGGTA chrIV:3636762-3636842 35 2.40e-05 GCGTCGCGCC CTCCGCCC TCCTCCGCAC chrIV:1745741-1745821 40 3.23e-05 AACATTTCGT GTCCTCCC ACGTTGTCTC chrX:1858772-1858852 43 3.23e-05 AAGCTCCCAC GTCCTCCC ATGTGGTCTA chrIV:3336774-3336854 43 3.23e-05 TTCGATCGGC GTCCTCCC TGAGACAATG chrX:4142456-4142536 42 4.06e-05 AGGATGACAA CTCCGCTC CGATTTGTTC chrI:3824421-3824501 8 4.06e-05 GATAACC CTCCGCTC ACAACCACGC chrII:2889348-2889428 69 5.81e-05 CGGCCACGGA GTCCTCTC GGAG chrV:17857993-17858073 8 5.81e-05 CAGCCAC GTCCTCTC ATCCCTCCCG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif STCCKCYC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:7079805-7079885 7.7e-06 33_[+5]_39 chrI:11374431-11374511 2.4e-05 48_[+5]_24 chrI:461697-461777 2.4e-05 67_[+5]_5 chrV:7848484-7848564 2.4e-05 56_[+5]_16 chrI:3940-4020 2.4e-05 61_[+5]_11 chrIV:3636762-3636842 2.4e-05 34_[+5]_38 chrIV:1745741-1745821 3.2e-05 39_[+5]_33 chrX:1858772-1858852 3.2e-05 42_[+5]_30 chrIV:3336774-3336854 3.2e-05 42_[+5]_30 chrX:4142456-4142536 4.1e-05 41_[+5]_31 chrI:3824421-3824501 4.1e-05 7_[+5]_65 chrII:2889348-2889428 5.8e-05 68_[+5]_4 chrV:17857993-17858073 5.8e-05 7_[+5]_65 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif STCCKCYC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF STCCKCYC width=8 seqs=13 chrI:7079805-7079885 ( 34) CTCCTCCC 1 chrI:11374431-11374511 ( 49) CTCCTCTC 1 chrI:461697-461777 ( 68) CTCCTCTC 1 chrV:7848484-7848564 ( 57) CTCCGCCC 1 chrI:3940-4020 ( 62) CTCCGCCC 1 chrIV:3636762-3636842 ( 35) CTCCGCCC 1 chrIV:1745741-1745821 ( 40) GTCCTCCC 1 chrX:1858772-1858852 ( 43) GTCCTCCC 1 chrIV:3336774-3336854 ( 43) GTCCTCCC 1 chrX:4142456-4142536 ( 42) CTCCGCTC 1 chrI:3824421-3824501 ( 8) CTCCGCTC 1 chrII:2889348-2889428 ( 69) GTCCTCTC 1 chrV:17857993-17858073 ( 8) GTCCTCTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif STCCKCYC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 12.0849 E= 4.5e+003 -1035 150 72 -1035 -1035 -1035 -1035 188 -1035 220 -1035 -1035 -1035 220 -1035 -1035 -1035 -1035 72 118 -1035 220 -1035 -1035 -1035 131 -1035 76 -1035 220 -1035 -1035 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif STCCKCYC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 13 E= 4.5e+003 0.000000 0.615385 0.384615 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.384615 0.615385 0.000000 1.000000 0.000000 0.000000 0.000000 0.538462 0.000000 0.461538 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif STCCKCYC MEME-5 regular expression -------------------------------------------------------------------------------- [CG]TCC[TG]C[CT]C -------------------------------------------------------------------------------- Time 22.90 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:17288557-17288637 9.62e-01 80 chrIV:15059344-15059424 1.00e+00 80 chrIV:3748180-3748260 1.00e+00 80 chrIV:13668286-13668366 1.00e+00 80 chrI:8866816-8866896 8.26e-01 80 chrIV:3743676-3743756 5.72e-01 80 chrM:3286-3366 9.90e-01 80 chrV:5838869-5838949 9.45e-01 80 chrM:8516-8596 9.86e-01 80 chrII:12058411-12058491 9.61e-01 80 chrM:10061-10141 9.99e-01 80 chrV:13907778-13907858 6.40e-01 80 chrX:1503936-1504016 1.00e+00 80 chrM:3590-3670 9.48e-01 80 chrII:10450539-10450619 1.73e-01 80 chrM:2977-3057 8.23e-01 80 chrIII:4096674-4096754 9.96e-01 80 chrM:10269-10349 1.00e+00 80 chrI:7869003-7869083 1.00e+00 80 chrI:8135119-8135199 9.98e-01 80 chrIII:13722367-13722447 4.70e-01 80 chrII:10543357-10543437 5.45e-01 80 chrV:10238230-10238310 7.99e-01 80 chrM:8212-8292 1.74e-01 80 chrI:7656712-7656792 5.77e-01 80 chrII:6559067-6559147 5.27e-01 80 chrM:10837-10917 9.92e-01 80 chrIII:3869305-3869385 6.70e-01 80 chrII:12795398-12795478 3.28e-02 80 chrII:12057061-12057141 9.93e-01 80 chrM:980-1060 9.98e-01 80 chrM:6024-6104 9.98e-01 80 chrX:6253977-6254057 8.24e-01 80 chrIV:8226691-8226771 1.00e+00 80 chrIII:12686745-12686825 8.12e-01 80 chrI:6093408-6093488 9.71e-02 80 chrM:7152-7232 9.98e-01 80 chrM:9092-9172 9.96e-01 80 chrIII:9462954-9463034 7.04e-01 80 chrI:13576093-13576173 1.00e+00 80 chrI:7658247-7658327 1.00e+00 80 chrIII:12598960-12599040 9.95e-01 80 chrM:2108-2188 8.93e-01 80 chrI:4177441-4177521 2.36e-01 80 chrX:2971081-2971161 3.09e-01 80 chrII:10302860-10302940 8.97e-01 80 chrM:4669-4749 1.00e+00 80 chrV:1158439-1158519 6.42e-01 80 chrM:1209-1289 9.93e-01 80 chrM:4870-4950 9.11e-01 80 chrM:11036-11116 1.00e+00 80 chrIII:10711348-10711428 7.81e-01 80 chrIII:5550839-5550919 9.98e-01 80 chrM:12415-12495 9.99e-01 80 chrIII:5943888-5943968 9.69e-01 80 chrI:6094526-6094606 4.46e-04 16_[+4(1.03e-05)]_28_[+3(1.98e-05)]_\ 20 chrM:2320-2400 7.34e-02 6_[+2(3.35e-05)]_66 chrV:10712358-10712438 6.40e-01 80 chrIII:3736868-3736948 1.00e+00 80 chrII:6346678-6346758 1.00e+00 80 chrI:4573683-4573763 1.00e+00 80 chrIV:2607897-2607977 9.68e-01 80 chrV:15321113-15321193 1.00e+00 80 chrII:14256004-14256084 2.49e-01 80 chrIII:9051382-9051462 9.83e-01 80 chrV:5842756-5842836 7.52e-01 80 chrII:12671494-12671574 8.77e-01 80 chrIV:3636762-3636842 2.77e-05 23_[+1(1.37e-05)]_3_[+5(2.40e-05)]_\ 38 chrM:6244-6324 9.46e-01 80 chrIV:2709771-2709851 8.27e-01 80 chrI:14651188-14651268 5.07e-01 80 chrX:5106339-5106419 9.87e-01 80 chrV:6098888-6098968 9.62e-01 80 chrV:265120-265200 1.00e+00 80 chrV:10712010-10712090 9.72e-01 80 chrV:14354395-14354475 4.58e-01 80 chrI:7079805-7079885 8.34e-02 33_[+5(7.72e-06)]_39 chrIII:5025154-5025234 5.29e-01 80 chrX:2058948-2059028 9.76e-01 80 chrIII:11694682-11694762 3.03e-01 80 chrI:2318204-2318284 2.78e-01 80 chrIV:8790977-8791057 9.99e-01 80 chrV:8228902-8228982 3.20e-01 80 chrI:3940-4020 2.35e-06 49_[+3(1.98e-05)]_4_[+5(2.40e-05)]_\ 11 chrIV:15900371-15900451 8.20e-01 80 chrIII:4195538-4195618 6.29e-01 80 chrX:13108858-13108938 9.44e-01 80 chrIII:6415533-6415613 1.00e+00 80 chrIII:10621425-10621505 1.24e-01 80 chrV:9340516-9340596 8.93e-01 80 chrIII:5939948-5940028 9.90e-01 80 chrI:378876-378956 7.61e-01 80 chrIII:12607375-12607455 6.89e-01 80 chrII:11814030-11814110 9.92e-01 80 chrV:5840937-5841017 2.75e-01 80 chrIV:3336774-3336854 2.54e-02 42_[+5(3.23e-05)]_30 chrIV:10737085-10737165 9.99e-01 80 chrI:11579708-11579788 3.30e-04 7_[+4(6.52e-05)]_50_[+2(4.75e-05)]_\ 7 chrX:15076430-15076510 1.94e-01 80 chrV:17857993-17858073 1.01e-01 7_[+5(5.81e-05)]_65 chrII:10542204-10542284 6.74e-01 80 chrV:7848484-7848564 8.52e-03 56_[+5(2.40e-05)]_16 chrIII:11463861-11463941 4.15e-01 80 chrIII:835887-835967 8.91e-02 80 chrIII:11792913-11792993 7.65e-01 80 chrV:5917855-5917935 7.63e-01 80 chrI:13470436-13470516 1.85e-02 26_[+1(8.91e-05)]_46 chrII:9285331-9285411 1.00e+00 80 chrI:7083060-7083140 5.40e-05 30_[+4(1.03e-05)]_17_[+1(7.14e-05)]_\ 17 chrI:7079559-7079639 1.00e+00 80 chrIV:17281388-17281468 7.59e-01 80 chrX:6744031-6744111 1.01e-01 80 chrIII:3324091-3324171 4.64e-01 80 chrI:7872290-7872370 2.95e-01 46_[+5(9.93e-05)]_26 chrI:1958541-1958621 1.67e-04 3_[+3(1.03e-05)]_15_[+3(1.03e-05)]_\ 46 chrIV:10933981-10934061 3.29e-01 80 chrX:13164356-13164436 9.92e-01 80 chrI:461697-461777 4.76e-05 49_[+2(6.09e-06)]_10_[+5(2.40e-05)]_\ 5 chrIII:1419985-1420065 5.00e-01 80 chrIV:15646638-15646718 9.42e-01 80 chrIII:11066913-11066993 3.44e-02 1_[+2(3.35e-05)]_71 chrII:3077074-3077154 5.44e-06 20_[+4(1.03e-05)]_10_[+1(5.01e-05)]_\ 34 chrIII:783402-783482 6.55e-01 80 chrIII:8974924-8975004 9.93e-01 80 chrIV:2602138-2602218 3.27e-02 80 chrI:2410082-2410162 2.54e-03 80 chrII:13199862-13199942 9.39e-01 80 chrX:1858772-1858852 1.11e-02 42_[+5(3.23e-05)]_30 chrII:11376784-11376864 9.19e-01 80 chrIV:991276-991356 1.17e-01 80 chrIII:10624787-10624867 3.62e-01 80 chrV:15085572-15085652 6.38e-01 80 chrIII:9053967-9054047 9.97e-02 80 chrI:13310407-13310487 1.38e-03 57_[+2(6.09e-06)]_15 chrI:10197097-10197177 5.29e-01 80 chrIII:12250681-12250761 1.81e-01 80 chrIV:6336897-6336977 9.89e-01 80 chrII:2889348-2889428 1.01e-04 6_[+2(6.43e-05)]_37_[+1(8.91e-05)]_\ 9_[+5(5.81e-05)]_4 chrI:7969038-7969118 9.94e-01 80 chrV:7854706-7854786 9.02e-01 80 chrIII:10407344-10407424 4.16e-01 80 chrIV:4469932-4470012 4.91e-03 8_[+1(7.14e-05)]_64 chrIII:349925-350005 1.95e-01 80 chrIV:51321-51401 7.53e-01 80 chrII:11547413-11547493 5.46e-01 80 chrII:11759433-11759513 1.52e-01 38_[+2(2.04e-05)]_34 chrI:4536050-4536130 3.32e-01 80 chrX:15200943-15201023 7.87e-01 80 chrIII:8653022-8653102 2.28e-01 80 chrIV:11026143-11026223 3.51e-01 80 chrIII:12617065-12617145 9.88e-01 80 chrX:16930183-16930263 8.45e-01 80 chrX:5022899-5022979 5.53e-02 80 chrIV:15570935-15571015 9.99e-01 80 chrII:12541782-12541862 9.77e-01 80 chrX:8971544-8971624 5.75e-01 80 chrII:8747446-8747526 8.13e-01 80 chrI:14058895-14058975 1.75e-05 11_[+1(2.03e-05)]_33_[+2(2.04e-05)]_\ 20 chrI:11374431-11374511 3.71e-04 48_[+5(2.40e-05)]_24 chrII:12102522-12102602 8.66e-01 80 chrX:11935160-11935240 2.98e-02 50_[+2(6.43e-05)]_22 chrIII:11090357-11090437 9.96e-01 80 chrI:13663365-13663445 9.46e-01 80 chrV:17951294-17951374 8.41e-01 80 chrIII:4369523-4369603 2.25e-01 80 chrIV:1745741-1745821 1.94e-03 39_[+5(3.23e-05)]_33 chrIV:4049659-4049739 2.63e-01 80 chrIV:11082880-11082960 3.47e-01 80 chrIV:8252965-8253045 1.27e-01 80 chrII:15025916-15025996 3.21e-03 9_[+1(2.84e-05)]_63 chrX:1319897-1319977 1.80e-03 37_[+2(7.78e-05)]_35 chrV:16356123-16356203 1.85e-03 22_[+1(6.09e-06)]_50 chrX:12890190-12890270 1.00e+00 80 chrIII:13464685-13464765 9.79e-01 80 chrX:16929980-16930060 3.09e-01 80 chrV:18967788-18967868 3.02e-02 80 chrX:12363126-12363206 1.00e+00 80 chrI:3824421-3824501 4.38e-02 7_[+5(4.06e-05)]_65 chrIII:10214625-10214705 2.72e-02 80 chrV:15551791-15551871 3.95e-04 12_[+2(4.75e-05)]_10_[+4(1.03e-05)]_\ 42 chrX:1909533-1909613 6.27e-02 80 chrX:4142456-4142536 1.63e-01 41_[+5(4.06e-05)]_31 chrII:14251494-14251574 4.12e-05 25_[+3(1.03e-05)]_24_[+1(6.09e-06)]_\ 15 chrIV:2219596-2219676 1.55e-01 80 chrI:2084962-2085042 1.78e-03 30_[+2(1.26e-05)]_42 chrIII:1424481-1424561 2.62e-02 80 chrV:7237298-7237378 7.61e-01 80 chrIV:1094309-1094389 2.04e-04 21_[+1(5.01e-05)]_51 chrI:14469307-14469387 6.41e-01 80 chrX:16056561-16056641 3.44e-01 80 chrI:882783-882863 2.70e-04 38_[+1(2.03e-05)]_34 chrX:10963767-10963847 7.55e-01 80 chrV:15511746-15511826 1.23e-02 43_[+4(1.03e-05)]_29 chrIV:16492417-16492497 4.22e-01 80 chrIV:6556750-6556830 2.28e-01 80 chrI:12652242-12652322 6.28e-01 80 chrI:5176391-5176471 1.22e-02 6_[+4(6.52e-05)]_66 chrIII:502722-502802 1.23e-02 29_[+1(7.14e-05)]_43 chrII:14561786-14561866 5.85e-01 80 chrI:8816544-8816624 4.82e-02 80 chrIII:9630036-9630116 1.00e+00 80 chrX:11095606-11095686 3.69e-01 80 chrIV:2389126-2389206 6.85e-03 80 chrI:16962-17042 8.50e-02 80 chrI:1068377-1068457 2.52e-02 80 chrX:1344983-1345063 5.07e-01 80 chrI:2514269-2514349 5.51e-03 61_[+2(4.75e-05)]_11 chrIV:17249875-17249955 2.40e-02 14_[+3(1.98e-05)]_58 chrI:8133954-8134034 1.00e+00 80 chrX:3970068-3970148 1.77e-01 80 chrIII:13463061-13463141 1.28e-01 80 chrI:1447048-1447128 5.69e-02 80 chrX:8811060-8811140 1.72e-04 49_[+1(1.37e-05)]_23 chrIII:836089-836169 9.92e-01 80 chrX:3697753-3697833 5.22e-01 80 chrI:536828-536908 5.30e-02 80 chrX:12106190-12106270 9.45e-03 24_[+2(4.75e-05)]_48 chrX:489888-489968 4.24e-02 2_[+4(1.03e-05)]_70 chrI:11182437-11182517 2.17e-01 72_[+1(8.91e-05)] chrI:12815879-12815959 9.99e-01 80 chrII:11545444-11545524 2.93e-04 15_[+2(2.04e-05)]_57 chrIV:13240686-13240766 2.35e-01 80 chrI:11323297-11323377 7.80e-02 61_[+3(1.03e-05)]_11 chrII:10868927-10869007 5.35e-04 7_[+4(1.03e-05)]_65 chrIII:10461282-10461362 1.59e-04 15_[+1(7.14e-05)]_15_[+3(1.03e-05)]_\ 34 chrI:11930138-11930218 6.24e-02 80 chrI:9619922-9620002 2.89e-05 30_[+1(1.37e-05)]_15_[+4(1.03e-05)]_\ 19 chrIII:6464374-6464454 5.12e-05 12_[+1(1.37e-05)]_22_[+3(4.41e-05)]_\ 30 chrIV:4727994-4728074 1.84e-01 80 chrV:16370155-16370235 1.10e-02 80 chrIV:4390618-4390698 1.39e-02 47_[+3(1.03e-05)]_25 chrIV:9477769-9477849 8.66e-01 80 chrI:5706966-5707046 2.00e-04 35_[+3(1.98e-05)]_37 chrII:8547090-8547170 9.21e-02 80 chrV:12780412-12780492 9.30e-01 80 chrI:3721696-3721776 9.86e-01 80 chrIII:3456355-3456435 5.68e-01 80 chrV:1868708-1868788 7.49e-01 80 chrIV:14033923-14034003 3.88e-01 80 chrX:12563796-12563876 5.49e-01 80 chrII:2974028-2974108 8.05e-01 80 chrIII:13643655-13643735 2.12e-03 22_[+1(8.91e-05)]_33_[+3(9.90e-05)]_\ 9 chrV:15191058-15191138 3.68e-01 80 chrII:14040352-14040432 1.48e-02 23_[+1(3.55e-05)]_49 chrV:7060501-7060581 2.17e-01 80 chrIII:354989-355069 3.27e-01 80 chrIII:12905154-12905234 7.54e-03 41_[+2(2.04e-05)]_31 chrI:2639738-2639818 2.56e-03 43_[+2(3.35e-05)]_29 chrII:9566263-9566343 2.58e-01 80 chrX:2613324-2613404 9.74e-01 80 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n12.farnam.hpc.yale.internal ********************************************************************************