******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/worm/fasta/RankLinear2.0_40/mef-2.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrIV:3026070-3026150 1.0000 80 chrX:2348112-2348192 1.0000 80 chrIV:3030042-3030122 1.0000 80 chrI:14922733-14922813 1.0000 80 chrII:15258765-15258845 1.0000 80 chrIV:8605448-8605528 1.0000 80 chrI:9092424-9092504 1.0000 80 chrIII:13456019-13456099 1.0000 80 chrI:8580273-8580353 1.0000 80 chrII:2504578-2504658 1.0000 80 chrV:9128795-9128875 1.0000 80 chrI:12571954-12572034 1.0000 80 chrI:9117250-9117330 1.0000 80 chrI:9095697-9095777 1.0000 80 chrX:14562454-14562534 1.0000 80 chrII:3897896-3897976 1.0000 80 chrI:6569365-6569445 1.0000 80 chrII:3897061-3897141 1.0000 80 chrM:8629-8709 1.0000 80 chrI:14924684-14924764 1.0000 80 chrM:257-337 1.0000 80 chrI:2024714-2024794 1.0000 80 chrIV:8587818-8587898 1.0000 80 chrX:6825985-6826065 1.0000 80 chrX:1453987-1454067 1.0000 80 chrM:11772-11852 1.0000 80 chrI:9428123-9428203 1.0000 80 chrX:6735643-6735723 1.0000 80 chrIV:17285475-17285555 1.0000 80 chrI:11140503-11140583 1.0000 80 chrI:14945643-14945723 1.0000 80 chrII:4494738-4494818 1.0000 80 chrX:12201943-12202023 1.0000 80 chrIII:671060-671140 1.0000 80 chrM:5534-5614 1.0000 80 chrIV:7242572-7242652 1.0000 80 chrM:1594-1674 1.0000 80 chrM:3982-4062 1.0000 80 chrV:12636471-12636551 1.0000 80 chrIV:10507733-10507813 1.0000 80 chrII:5663635-5663715 1.0000 80 chrV:6229010-6229090 1.0000 80 chrV:9561938-9562018 1.0000 80 chrM:11498-11578 1.0000 80 chrM:7767-7847 1.0000 80 chrX:3839410-3839490 1.0000 80 chrIII:6988219-6988299 1.0000 80 chrIV:6879095-6879175 1.0000 80 chrX:7478919-7478999 1.0000 80 chrX:16730558-16730638 1.0000 80 chrIII:5758844-5758924 1.0000 80 chrX:12878107-12878187 1.0000 80 chrI:9373519-9373599 1.0000 80 chrII:2832304-2832384 1.0000 80 chrIV:3647761-3647841 1.0000 80 chrV:3259322-3259402 1.0000 80 chrM:5747-5827 1.0000 80 chrII:1085085-1085165 1.0000 80 chrV:10874336-10874416 1.0000 80 chrII:7325086-7325166 1.0000 80 chrX:1054059-1054139 1.0000 80 chrIV:3656109-3656189 1.0000 80 chrX:3945188-3945268 1.0000 80 chrV:3870524-3870604 1.0000 80 chrI:9111037-9111117 1.0000 80 chrII:760837-760917 1.0000 80 chrII:11762033-11762113 1.0000 80 chrIII:7217233-7217313 1.0000 80 chrM:6446-6526 1.0000 80 chrIV:8978196-8978276 1.0000 80 chrI:1062074-1062154 1.0000 80 chrIII:5623575-5623655 1.0000 80 chrIV:2279059-2279139 1.0000 80 chrIV:4477302-4477382 1.0000 80 chrI:10327756-10327836 1.0000 80 chrX:13555224-13555304 1.0000 80 chrI:7314472-7314552 1.0000 80 chrM:9550-9630 1.0000 80 chrV:6630867-6630947 1.0000 80 chrX:15706225-15706305 1.0000 80 chrIII:8782246-8782326 1.0000 80 chrI:5377663-5377743 1.0000 80 chrIV:6393454-6393534 1.0000 80 chrV:1805109-1805189 1.0000 80 chrIII:11942807-11942887 1.0000 80 chrI:9725396-9725476 1.0000 80 chrI:12179548-12179628 1.0000 80 chrIV:12651733-12651813 1.0000 80 chrI:3822800-3822880 1.0000 80 chrX:2598976-2599056 1.0000 80 chrX:13562096-13562176 1.0000 80 chrIII:3991532-3991612 1.0000 80 chrIII:4723987-4724067 1.0000 80 chrIII:5757667-5757747 1.0000 80 chrIII:6278692-6278772 1.0000 80 chrI:6435838-6435918 1.0000 80 chrI:7130948-7131028 1.0000 80 chrI:9128944-9129024 1.0000 80 chrV:7822749-7822829 1.0000 80 chrI:11937399-11937479 1.0000 80 chrI:9131991-9132071 1.0000 80 chrII:12107973-12108053 1.0000 80 chrIV:10481868-10481948 1.0000 80 chrII:4506631-4506711 1.0000 80 chrX:13396714-13396794 1.0000 80 chrM:3714-3794 1.0000 80 chrX:6741222-6741302 1.0000 80 chrIII:10604503-10604583 1.0000 80 chrI:9097793-9097873 1.0000 80 chrI:9113214-9113294 1.0000 80 chrM:2872-2952 1.0000 80 chrIV:17277311-17277391 1.0000 80 chrV:1480951-1481031 1.0000 80 chrI:7480232-7480312 1.0000 80 chrIV:15814131-15814211 1.0000 80 chrIV:15696981-15697061 1.0000 80 chrIII:5639969-5640049 1.0000 80 chrX:1051166-1051246 1.0000 80 chrIV:9447330-9447410 1.0000 80 chrV:20782335-20782415 1.0000 80 chrX:17640941-17641021 1.0000 80 chrX:16129039-16129119 1.0000 80 chrX:15386141-15386221 1.0000 80 chrV:265207-265287 1.0000 80 chrIV:3741248-3741328 1.0000 80 chrM:12275-12355 1.0000 80 chrX:662015-662095 1.0000 80 chrM:11230-11310 1.0000 80 chrI:4908206-4908286 1.0000 80 chrII:10800350-10800430 1.0000 80 chrII:14044356-14044436 1.0000 80 chrIV:16658821-16658901 1.0000 80 chrX:16735094-16735174 1.0000 80 chrX:13768626-13768706 1.0000 80 chrM:3152-3232 1.0000 80 chrIII:86493-86573 1.0000 80 chrI:2292931-2293011 1.0000 80 chrI:11934315-11934395 1.0000 80 chrIV:8040792-8040872 1.0000 80 chrV:10867766-10867846 1.0000 80 chrX:3023925-3024005 1.0000 80 chrI:7954926-7955006 1.0000 80 chrI:14939928-14940008 1.0000 80 chrV:13909554-13909634 1.0000 80 chrX:13975469-13975549 1.0000 80 chrIV:7402234-7402314 1.0000 80 chrIV:5604540-5604620 1.0000 80 chrIII:6364553-6364633 1.0000 80 chrII:10547987-10548067 1.0000 80 chrIII:1007676-1007756 1.0000 80 chrIV:11347388-11347468 1.0000 80 chrII:11757001-11757081 1.0000 80 chrI:11840927-11841007 1.0000 80 chrM:5997-6077 1.0000 80 chrV:7728028-7728108 1.0000 80 chrIV:8629737-8629817 1.0000 80 chrIV:4471596-4471676 1.0000 80 chrV:15566626-15566706 1.0000 80 chrII:13066937-13067017 1.0000 80 chrI:7662199-7662279 1.0000 80 chrII:11836861-11836941 1.0000 80 chrX:6739718-6739798 1.0000 80 chrI:12551185-12551265 1.0000 80 chrIII:6897772-6897852 1.0000 80 chrIV:4093284-4093364 1.0000 80 chrI:7082242-7082322 1.0000 80 chrIV:7902673-7902753 1.0000 80 chrII:6839146-6839226 1.0000 80 chrII:7323519-7323599 1.0000 80 chrI:1069976-1070056 1.0000 80 chrX:12877016-12877096 1.0000 80 chrIV:10512837-10512917 1.0000 80 chrI:9096498-9096578 1.0000 80 chrI:10145392-10145472 1.0000 80 chrIII:5930869-5930949 1.0000 80 chrIV:2993359-2993439 1.0000 80 chrV:3716441-3716521 1.0000 80 chrV:20711935-20712015 1.0000 80 chrV:13086073-13086153 1.0000 80 chrIV:4024237-4024317 1.0000 80 chrX:4142305-4142385 1.0000 80 chrV:10174762-10174842 1.0000 80 chrV:12529047-12529127 1.0000 80 chrV:4507930-4508010 1.0000 80 chrIV:11956456-11956536 1.0000 80 chrM:1051-1131 1.0000 80 chrIV:11350101-11350181 1.0000 80 chrM:2046-2126 1.0000 80 chrI:8135011-8135091 1.0000 80 chrV:10858560-10858640 1.0000 80 chrX:7306597-7306677 1.0000 80 chrI:12164820-12164900 1.0000 80 chrI:14898761-14898841 1.0000 80 chrI:7479373-7479453 1.0000 80 chrM:7204-7284 1.0000 80 chrV:4143273-4143353 1.0000 80 chrX:13358684-13358764 1.0000 80 chrIV:11354097-11354177 1.0000 80 chrIV:10935486-10935566 1.0000 80 chrI:9739570-9739650 1.0000 80 chrI:9076292-9076372 1.0000 80 chrX:382830-382910 1.0000 80 chrV:20776937-20777017 1.0000 80 chrX:13356588-13356668 1.0000 80 chrX:10377826-10377906 1.0000 80 chrII:13681143-13681223 1.0000 80 chrV:20005861-20005941 1.0000 80 chrI:6835310-6835390 1.0000 80 chrIV:9196897-9196977 1.0000 80 chrV:15189714-15189794 1.0000 80 chrX:2668004-2668084 1.0000 80 chrI:1053761-1053841 1.0000 80 chrI:6579920-6580000 1.0000 80 chrIII:12613395-12613475 1.0000 80 chrV:10951789-10951869 1.0000 80 chrV:11641465-11641545 1.0000 80 chrI:4941215-4941295 1.0000 80 chrIV:3725978-3726058 1.0000 80 chrI:2605360-2605440 1.0000 80 chrIII:8985141-8985221 1.0000 80 chrIII:8658496-8658576 1.0000 80 chrV:19521816-19521896 1.0000 80 chrI:10839157-10839237 1.0000 80 chrIV:13395362-13395442 1.0000 80 chrX:13329048-13329128 1.0000 80 chrV:9243736-9243816 1.0000 80 chrII:11778202-11778282 1.0000 80 chrX:3116406-3116486 1.0000 80 chrI:3806663-3806743 1.0000 80 chrI:2864089-2864169 1.0000 80 chrIV:14786969-14787049 1.0000 80 chrV:20710300-20710380 1.0000 80 chrV:731402-731482 1.0000 80 chrX:12200681-12200761 1.0000 80 chrIV:4034976-4035056 1.0000 80 chrV:619224-619304 1.0000 80 chrI:7861561-7861641 1.0000 80 chrV:14200176-14200256 1.0000 80 chrIV:2048979-2049059 1.0000 80 chrIII:10505355-10505435 1.0000 80 chrX:12872439-12872519 1.0000 80 chrIV:6881298-6881378 1.0000 80 chrIII:12556263-12556343 1.0000 80 chrI:5379834-5379914 1.0000 80 chrII:5061946-5062026 1.0000 80 chrV:15880829-15880909 1.0000 80 chrII:11348123-11348203 1.0000 80 chrIII:12978924-12979004 1.0000 80 chrIII:7335379-7335459 1.0000 80 chrX:4971567-4971647 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/worm/inference_raw/MEME/RankLinear2.0_40_mef-2/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/worm/fasta/RankLinear2.0_40/mef-2.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.275 C 0.213 G 0.206 T 0.306 Background letter frequencies (from file dataset with add-one prior applied): A 0.275 C 0.213 G 0.206 T 0.306 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF RRARAGAR MEME-1 width = 8 sites = 71 llr = 537 E-value = 1.0e-017 ******************************************************************************** -------------------------------------------------------------------------------- Motif RRARAGAR MEME-1 Description -------------------------------------------------------------------------------- Simplified A 64a4a3a5 pos.-specific C :::::::1 probability G 46:6:7:4 matrix T :::::::: bits 2.3 2.1 1.8 * * * 1.6 * * * Relative 1.4 * *** Entropy 1.1 ******* (10.9 bits) 0.9 ******* 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel AGAGAGAA consensus GA A A G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RRARAGAR MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrV:3716441-3716521 20 1.03e-05 ATGTTTAAAA GGAGAGAA ATGGGTGCTC chrI:7954926-7955006 21 1.03e-05 ATCTGATGAC GGAGAGAA AAAAATGTGA chrIV:4034976-4035056 31 3.18e-05 GGAGTCTGGC AGAGAGAA AGAGAGGAGA chrI:9076292-9076372 10 3.18e-05 gagagatac agagagaa aaagagCACA chrV:4507930-4508010 38 3.18e-05 CAAAGAGATT GGAGAGAG TTGGCTGGCA chrII:6839146-6839226 21 3.18e-05 GCGGCAAACC GGAGAGAG TGTATTTCCG chrIII:6364553-6364633 64 3.18e-05 AAGAAAAGTG GGAGAGAG AGTGAAGGA chrIV:15696981-15697061 40 3.18e-05 AGTGGGGTGG GGAGAGAG GACAGAGACG chrIII:4723987-4724067 52 3.18e-05 TCAGTGATAT AGAGagaa aaaagaaaga chrIV:12651733-12651813 45 3.18e-05 ATCTATTCga ggagagag aaaatgagag chrV:9561938-9562018 69 3.18e-05 GGAGTGAGGA AGAGAGAA GAGA chrII:11778202-11778282 68 4.21e-05 TGTGCATTTT AGAGAGAG CGCAG chrI:2605360-2605440 73 4.21e-05 gaaACTGGCA AGAGAGAG chrI:9111037-9111117 41 4.21e-05 GAAGTTCATG AGAGAGAG GCGGATATAG chrI:14924684-14924764 35 4.21e-05 AAAAAAAGAA AGAGAGAG CGcttcttct chrI:9092424-9092504 27 4.21e-05 AGAAAAAAAA AGAGAGAG AATATGTCAG chrX:662015-662095 33 5.58e-05 GGTTTTCAGA GAAGAGAA AAACTGAAAA chrI:8580273-8580353 34 5.58e-05 CGGAAAAGGA GAAGAGAA GGAAAACAGA chrIII:8658496-8658576 29 8.45e-05 CTGGGGGGAA AAAGAGAA AGACAGAGAC chrI:12179548-12179628 52 8.45e-05 GCTGTTTGGA AAAGAGAA GAATGAAAAT chrI:5377663-5377743 56 8.45e-05 AACCGCACAT GAAGAGAG TGAGGGACTC chrX:13555224-13555304 11 8.45e-05 AAAAATGAAA GAAGAGAG GAAATGATAA chrI:6569365-6569445 58 8.45e-05 AATCCTTCAA GAAGAGAG CACGAGAAAT chrI:9097793-9097873 9 9.82e-05 CAGATTGA AAAGAGAG GAAAAAACAA chrI:1062074-1062154 8 9.82e-05 GACTCGA AAAGAGAG TGCCCACCGC chrX:17640941-17641021 19 1.12e-04 TACCGCTGGA GGAAAGAA GAAAGGGGGG chrIV:9196897-9196977 21 1.41e-04 ATAGAGTCGC AGAAAGAA AAGTAGGGAA chrIV:11347388-11347468 67 1.41e-04 TTGGAGATTT AGAAAGAA GAGGGA chrIV:10481868-10481948 43 1.41e-04 AAATGAGGGG GGAAAGAG GGGTTAGAGA chrII:4494738-4494818 21 1.41e-04 TTTTTTTGAT GGAAAGAG TTCGTTTCTA chrX:6825985-6826065 20 1.41e-04 AATGTGGGTT AGAAAGAA AAGTTTTTGT chrIV:8587818-8587898 7 1.41e-04 CGAAAA AGAAAGAA ATATATCTTG chrIV:3026070-3026150 54 1.41e-04 AGTTATTTTG GGAAAGAG CAGTAGAAGA chrIII:8985141-8985221 63 1.54e-04 GCGGGAAATG AGAAAGAG CACGTATGGG chrIII:7335379-7335459 56 1.68e-04 CATGACATGG GGAGAAAA CGACAGAAAC chrIV:16658821-16658901 67 1.68e-04 GAGCTCGCGT GGAGAAAA AGAAAA chrIV:10507733-10507813 27 1.68e-04 AGGGAAAAGT GGAGAAAA GCGGAAATAT chrI:12164820-12164900 2 1.97e-04 G AGAGAAAA TTGGAGAAAT chrM:2872-2952 65 1.97e-04 TTTTATTTCA AGAGAAAA ATTTTCAG chrX:3116406-3116486 60 2.29e-04 GTAGTAACAG GAAAAGAA GAGATTTGAG chrX:4971567-4971647 66 2.75e-04 TTAAAACATT GGAGAGAC TATGCGG chrIV:11354097-11354177 40 2.75e-04 GTGAAAAGAG GAAAAGAG CATCGTCTCG chrI:7662199-7662279 52 2.75e-04 CGCAAAAAGA AAAAAGAA TGAACATGTG chrM:5997-6077 5 2.75e-04 GTTG GGAGAGAC TTGATCACCT chrIV:9447330-9447410 33 2.75e-04 CACATGGaag aaaaagaa gcacaaaaat chrX:1054059-1054139 70 2.75e-04 TGAAAAAATA AAAAAGAA GAA chrII:1085085-1085165 57 2.75e-04 CCTCGTCATC AAAAAGAA GCCTGCGTCT chrII:5663635-5663715 6 2.75e-04 aagaa aaaaagaa gataaagtaa chrM:8629-8709 27 2.75e-04 TTAACAGGAA AAAAAGAA GTTTTTGGTG chrV:15880829-15880909 66 3.04e-04 AAAAAAGATC AAAAAGAG GAGATGA chrX:10377826-10377906 43 3.04e-04 ACTGAACGAC AAAAAGAG GAGGGCGAGG chrIV:8040792-8040872 44 3.04e-04 ATTGAGAGAT AGAGAGAC GAAAAGATGC chrI:9128944-9129024 70 3.04e-04 ACAAAGCCAC AGAGAGAC ATT chrI:7082242-7082322 42 3.22e-04 CCACCAGTGA GAAGAAAA AAGGGGCATT chrX:13562096-13562176 14 3.22e-04 GAATGAAAAC GAAGAAAA AACAGCACAT chrII:11762033-11762113 61 3.22e-04 CATTAATATT GAAGAAAA TTTAGAACAA chrI:7861561-7861641 44 3.61e-04 GCTTCGCGTG AAAGAAAA TATTGAGGAG chrV:15189714-15189794 16 3.61e-04 TCTGCTGATG AAAGAAAA CCTTATTCAA chrI:14939928-14940008 22 3.61e-04 ACGTTGAAGT AAAGAAAA CCTTCAATGT chrX:14562454-14562534 66 3.61e-04 CGCCATTGGA GAAGAAAG TGGGAGT chrI:10327756-10327836 41 3.79e-04 CGAAAGAAGC AAAGAAAG CACACACGAC chrIII:12978924-12979004 1 4.08e-04 . GGAAAAAA TTTAGGCCCA chrV:19521816-19521896 11 4.08e-04 GATACCTTGT GAAGAGAC ATTGGGACAG chrIV:4471596-4471676 5 4.08e-04 AGGA GGAAAAAA GACTGGAGAC chrIV:3741248-3741328 49 4.08e-04 ACCGAATTGA GGAAAAAA GGGTTGTAGA chrI:1053761-1053841 32 4.61e-04 ACGCTGTGTA AAAGAGAC GCGCAGAGAA chrI:14898761-14898841 36 4.61e-04 ACAAAACAGC AGAAAAAA AAAACAAAAA chrIV:7242572-7242652 48 4.61e-04 GACAAAAAAC AGAAAAAA AACAGTTGGT chrIII:11942807-11942887 27 4.79e-04 GAGAGTTCTC AGAAAAAG TGTAAAAATT chrIII:12556263-12556343 2 5.90e-04 A AAAAAAAA ACCAAGATGA chrX:3839410-3839490 54 6.29e-04 GCATTGCGCC AGAGAAAC CACCGCTCTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RRARAGAR MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:3716441-3716521 1e-05 19_[+1]_53 chrI:7954926-7955006 1e-05 20_[+1]_52 chrIV:4034976-4035056 3.2e-05 30_[+1]_42 chrI:9076292-9076372 3.2e-05 9_[+1]_63 chrV:4507930-4508010 3.2e-05 37_[+1]_35 chrII:6839146-6839226 3.2e-05 20_[+1]_52 chrIII:6364553-6364633 3.2e-05 63_[+1]_9 chrIV:15696981-15697061 3.2e-05 39_[+1]_33 chrIII:4723987-4724067 3.2e-05 51_[+1]_21 chrIV:12651733-12651813 3.2e-05 44_[+1]_28 chrV:9561938-9562018 3.2e-05 68_[+1]_4 chrII:11778202-11778282 4.2e-05 67_[+1]_5 chrI:2605360-2605440 4.2e-05 72_[+1] chrI:9111037-9111117 4.2e-05 40_[+1]_32 chrI:14924684-14924764 4.2e-05 34_[+1]_38 chrI:9092424-9092504 4.2e-05 26_[+1]_46 chrX:662015-662095 5.6e-05 32_[+1]_40 chrI:8580273-8580353 5.6e-05 33_[+1]_39 chrIII:8658496-8658576 8.4e-05 28_[+1]_44 chrI:12179548-12179628 8.4e-05 51_[+1]_21 chrI:5377663-5377743 8.4e-05 55_[+1]_17 chrX:13555224-13555304 8.4e-05 10_[+1]_62 chrI:6569365-6569445 8.4e-05 57_[+1]_15 chrI:9097793-9097873 9.8e-05 8_[+1]_64 chrI:1062074-1062154 9.8e-05 7_[+1]_65 chrX:17640941-17641021 0.00011 18_[+1]_54 chrIV:9196897-9196977 0.00014 20_[+1]_52 chrIV:11347388-11347468 0.00014 66_[+1]_6 chrIV:10481868-10481948 0.00014 42_[+1]_30 chrII:4494738-4494818 0.00014 20_[+1]_52 chrX:6825985-6826065 0.00014 19_[+1]_53 chrIV:8587818-8587898 0.00014 6_[+1]_66 chrIV:3026070-3026150 0.00014 53_[+1]_19 chrIII:8985141-8985221 0.00015 62_[+1]_10 chrIII:7335379-7335459 0.00017 55_[+1]_17 chrIV:16658821-16658901 0.00017 66_[+1]_6 chrIV:10507733-10507813 0.00017 26_[+1]_46 chrI:12164820-12164900 0.0002 1_[+1]_71 chrM:2872-2952 0.0002 64_[+1]_8 chrX:3116406-3116486 0.00023 59_[+1]_13 chrX:4971567-4971647 0.00028 65_[+1]_7 chrIV:11354097-11354177 0.00028 39_[+1]_33 chrI:7662199-7662279 0.00028 51_[+1]_21 chrM:5997-6077 0.00028 4_[+1]_68 chrIV:9447330-9447410 0.00028 32_[+1]_40 chrX:1054059-1054139 0.00028 69_[+1]_3 chrII:1085085-1085165 0.00028 56_[+1]_16 chrII:5663635-5663715 0.00028 5_[+1]_67 chrM:8629-8709 0.00028 26_[+1]_46 chrV:15880829-15880909 0.0003 65_[+1]_7 chrX:10377826-10377906 0.0003 42_[+1]_30 chrIV:8040792-8040872 0.0003 43_[+1]_29 chrI:9128944-9129024 0.0003 69_[+1]_3 chrI:7082242-7082322 0.00032 41_[+1]_31 chrX:13562096-13562176 0.00032 13_[+1]_59 chrII:11762033-11762113 0.00032 60_[+1]_12 chrI:7861561-7861641 0.00036 43_[+1]_29 chrV:15189714-15189794 0.00036 15_[+1]_57 chrI:14939928-14940008 0.00036 21_[+1]_51 chrX:14562454-14562534 0.00036 65_[+1]_7 chrI:10327756-10327836 0.00038 40_[+1]_32 chrIII:12978924-12979004 0.00041 [+1]_72 chrV:19521816-19521896 0.00041 10_[+1]_62 chrIV:4471596-4471676 0.00041 4_[+1]_68 chrIV:3741248-3741328 0.00041 48_[+1]_24 chrI:1053761-1053841 0.00046 31_[+1]_41 chrI:14898761-14898841 0.00046 35_[+1]_37 chrIV:7242572-7242652 0.00046 47_[+1]_25 chrIII:11942807-11942887 0.00048 26_[+1]_46 chrIII:12556263-12556343 0.00059 1_[+1]_71 chrX:3839410-3839490 0.00063 53_[+1]_19 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RRARAGAR MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RRARAGAR width=8 seqs=71 chrV:3716441-3716521 ( 20) GGAGAGAA 1 chrI:7954926-7955006 ( 21) GGAGAGAA 1 chrIV:4034976-4035056 ( 31) AGAGAGAA 1 chrI:9076292-9076372 ( 10) AGAGAGAA 1 chrV:4507930-4508010 ( 38) GGAGAGAG 1 chrII:6839146-6839226 ( 21) GGAGAGAG 1 chrIII:6364553-6364633 ( 64) GGAGAGAG 1 chrIV:15696981-15697061 ( 40) GGAGAGAG 1 chrIII:4723987-4724067 ( 52) AGAGAGAA 1 chrIV:12651733-12651813 ( 45) GGAGAGAG 1 chrV:9561938-9562018 ( 69) AGAGAGAA 1 chrII:11778202-11778282 ( 68) AGAGAGAG 1 chrI:2605360-2605440 ( 73) AGAGAGAG 1 chrI:9111037-9111117 ( 41) AGAGAGAG 1 chrI:14924684-14924764 ( 35) AGAGAGAG 1 chrI:9092424-9092504 ( 27) AGAGAGAG 1 chrX:662015-662095 ( 33) GAAGAGAA 1 chrI:8580273-8580353 ( 34) GAAGAGAA 1 chrIII:8658496-8658576 ( 29) AAAGAGAA 1 chrI:12179548-12179628 ( 52) AAAGAGAA 1 chrI:5377663-5377743 ( 56) GAAGAGAG 1 chrX:13555224-13555304 ( 11) GAAGAGAG 1 chrI:6569365-6569445 ( 58) GAAGAGAG 1 chrI:9097793-9097873 ( 9) AAAGAGAG 1 chrI:1062074-1062154 ( 8) AAAGAGAG 1 chrX:17640941-17641021 ( 19) GGAAAGAA 1 chrIV:9196897-9196977 ( 21) AGAAAGAA 1 chrIV:11347388-11347468 ( 67) AGAAAGAA 1 chrIV:10481868-10481948 ( 43) GGAAAGAG 1 chrII:4494738-4494818 ( 21) GGAAAGAG 1 chrX:6825985-6826065 ( 20) AGAAAGAA 1 chrIV:8587818-8587898 ( 7) AGAAAGAA 1 chrIV:3026070-3026150 ( 54) GGAAAGAG 1 chrIII:8985141-8985221 ( 63) AGAAAGAG 1 chrIII:7335379-7335459 ( 56) GGAGAAAA 1 chrIV:16658821-16658901 ( 67) GGAGAAAA 1 chrIV:10507733-10507813 ( 27) GGAGAAAA 1 chrI:12164820-12164900 ( 2) AGAGAAAA 1 chrM:2872-2952 ( 65) AGAGAAAA 1 chrX:3116406-3116486 ( 60) GAAAAGAA 1 chrX:4971567-4971647 ( 66) GGAGAGAC 1 chrIV:11354097-11354177 ( 40) GAAAAGAG 1 chrI:7662199-7662279 ( 52) AAAAAGAA 1 chrM:5997-6077 ( 5) GGAGAGAC 1 chrIV:9447330-9447410 ( 33) AAAAAGAA 1 chrX:1054059-1054139 ( 70) AAAAAGAA 1 chrII:1085085-1085165 ( 57) AAAAAGAA 1 chrII:5663635-5663715 ( 6) AAAAAGAA 1 chrM:8629-8709 ( 27) AAAAAGAA 1 chrV:15880829-15880909 ( 66) AAAAAGAG 1 chrX:10377826-10377906 ( 43) AAAAAGAG 1 chrIV:8040792-8040872 ( 44) AGAGAGAC 1 chrI:9128944-9129024 ( 70) AGAGAGAC 1 chrI:7082242-7082322 ( 42) GAAGAAAA 1 chrX:13562096-13562176 ( 14) GAAGAAAA 1 chrII:11762033-11762113 ( 61) GAAGAAAA 1 chrI:7861561-7861641 ( 44) AAAGAAAA 1 chrV:15189714-15189794 ( 16) AAAGAAAA 1 chrI:14939928-14940008 ( 22) AAAGAAAA 1 chrX:14562454-14562534 ( 66) GAAGAAAG 1 chrI:10327756-10327836 ( 41) AAAGAAAG 1 chrIII:12978924-12979004 ( 1) GGAAAAAA 1 chrV:19521816-19521896 ( 11) GAAGAGAC 1 chrIV:4471596-4471676 ( 5) GGAAAAAA 1 chrIV:3741248-3741328 ( 49) GGAAAAAA 1 chrI:1053761-1053841 ( 32) AAAGAGAC 1 chrI:14898761-14898841 ( 36) AGAAAAAA 1 chrIV:7242572-7242652 ( 48) AGAAAAAA 1 chrIII:11942807-11942887 ( 27) AGAAAAAG 1 chrIII:12556263-12556343 ( 2) AAAAAAAA 1 chrX:3839410-3839490 ( 54) AGAGAAAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RRARAGAR MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.0332 E= 1.0e-017 103 -1279 108 -1279 62 -1279 149 -1279 186 -1279 -1279 -1279 41 -1279 162 -1279 186 -1279 -1279 -1279 10 -1279 177 -1279 186 -1279 -1279 -1279 100 -111 77 -1279 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RRARAGAR MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 71 E= 1.0e-017 0.563380 0.000000 0.436620 0.000000 0.422535 0.000000 0.577465 0.000000 1.000000 0.000000 0.000000 0.000000 0.366197 0.000000 0.633803 0.000000 1.000000 0.000000 0.000000 0.000000 0.295775 0.000000 0.704225 0.000000 1.000000 0.000000 0.000000 0.000000 0.549296 0.098592 0.352113 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RRARAGAR MEME-1 regular expression -------------------------------------------------------------------------------- [AG][GA]A[GA]A[GA]A[AG] -------------------------------------------------------------------------------- Time 8.76 secs. ******************************************************************************** ******************************************************************************** MOTIF YTYTCTCT MEME-2 width = 8 sites = 99 llr = 673 E-value = 4.0e-015 ******************************************************************************** -------------------------------------------------------------------------------- Motif YTYTCTCT MEME-2 Description -------------------------------------------------------------------------------- Simplified A 1::::::2 pos.-specific C 5:519:a: probability G 11:::::1 matrix T 39591a:7 bits 2.3 * 2.1 * 1.8 *** 1.6 *** Relative 1.4 *** Entropy 1.1 * **** (9.8 bits) 0.9 * **** 0.7 ******* 0.5 ******* 0.2 ******** 0.0 -------- Multilevel CTTTCTCT consensus T C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTYTCTCT MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:12872439-12872519 11 1.80e-05 tctctcttct ctctctct ctttctccgc chrIV:2048979-2049059 70 1.80e-05 CATCGCATCG CTCTCTCT CCA chrX:12200681-12200761 67 1.80e-05 TCTCGATTTC CTCTCTCT TTTTTT chrIV:14786969-14787049 10 1.80e-05 GTAATCTCT CTCTCTCT ATCTATCCGT chrI:3806663-3806743 38 1.80e-05 GTAGCCTCTT CTCTCTCT CACTTTTTCT chrI:10839157-10839237 10 1.80e-05 CTGCTCTCT CTCTCTCT CTCTCTTTTT chrV:20711935-20712015 30 1.80e-05 cgccatctct ctctctct ctcCCCTCAT chrII:10547987-10548067 39 1.80e-05 ctctctctct ctctctct ctctctctAT chrI:9097793-9097873 49 1.80e-05 ATCTCTGTCA CTCTCTCT TCTTGATGAT chrII:4506631-4506711 5 1.80e-05 GAGG CTCTCTCT AGTATAATAG chrX:2598976-2599056 20 1.80e-05 CAAtctctca ctctctct ttttctctct chrI:9095697-9095777 42 1.80e-05 CACGGGTACT CTCTCTCT CCCTTTTTCA chrI:9117250-9117330 66 1.80e-05 TTGTCGCTGT CTCTCTCT TCGCGGA chrII:2504578-2504658 14 1.80e-05 TTCTCCCGCA CTCTCTCT GCGTCTCACG chrI:9092424-9092504 72 1.80e-05 atctctctct ctctctct c chrIII:7335379-7335459 13 4.40e-05 ATGCCCTTCT CTTTCTCT CTTTTCACTT chrI:6835310-6835390 35 4.40e-05 TCTTTCTCTG CTTTCTCT CAAGCTCTTA chrV:12529047-12529127 30 4.40e-05 CTCTTTTTAT CTTTCTCT ATTCCTCTCA chrV:13086073-13086153 40 4.40e-05 TGCTCCCTTT CTTTCTCT ATATCTCTTA chrI:11937399-11937479 12 4.40e-05 TGTTTACTCT CTTTCTCT CGCGCTCTCC chrIII:7217233-7217313 21 4.40e-05 CAGTGGGTAC CTTTCTCT CGCATCTCTC chrV:619224-619304 45 6.99e-05 CCAGCCGTTT TTCTCTCT AAATCTCATC chrI:10145392-10145472 2 1.07e-04 C TTTTCTCT TATCCCTCTT chrIV:4093284-4093364 24 1.07e-04 GCCCGAACCT TTTTCTCT CGACACTCTC chrIII:6897772-6897852 43 1.07e-04 AGATGTCTCA TTTTCTCT GCGTCTCAAC chrM:3152-3232 44 1.07e-04 CAAAGTTATA TTTTCTCT CGTTTAATTT chrII:10800350-10800430 19 1.07e-04 atgTTTTCTT TTTTCTCT ATCTCTTCTC chrI:6435838-6435918 67 1.07e-04 TTTTCCCCTT TTTTCTCT CCCTCA chrIV:6393454-6393534 2 1.07e-04 T TTTTCTCT GTCTCTTTGg chrIV:8978196-8978276 51 1.07e-04 GCTATTTCTA TTTTCTCT GCATCTTTCT chrI:2024714-2024794 62 1.07e-04 TTTTTTGTCT TTTTCTCT AAGTCTCTCA chrII:15258765-15258845 55 1.07e-04 CTCTTCTTTT TTTTCTCT TTTCCTCTTC chrX:13329048-13329128 14 1.36e-04 CCACTCTCTA CTCTCTCG TCAGTGCAAA chrIV:10935486-10935566 50 1.36e-04 TTTCCTCATG CTCTCTCG CTGAAACGCA chrIV:11956456-11956536 12 1.36e-04 ctcactctcg ctctctcA TCCTCAACGA chrIV:4024237-4024317 40 1.36e-04 GTCTGCAGTG CTCTCTCA CTTTCGCGCA chrI:11840927-11841007 55 1.36e-04 ATTTTGTGTA CTCTCTCG TTGTGTTGTC chrI:9131991-9132071 5 1.36e-04 cata ctctctca ctcATCGTCA chrI:9128944-9129024 33 1.36e-04 TTCTCTGCAA CTCTCTCA CTCTCGTTCG chrII:2832304-2832384 43 1.36e-04 TTTCTCTGCG CTCTCTCG CTCTCTAGAT chrV:20710300-20710380 42 1.53e-04 GTCTCTTTGT GTCTCTCT ATATCTCGTA chrI:9373519-9373599 11 1.53e-04 CATCATCTGG GTCTCTCT TTTTCCTTCT chrIV:7902673-7902753 73 2.30e-04 TTTCTTATCG CTTTCTCG chrI:7954926-7955006 1 2.30e-04 . ATCTCTCT AGATCTGATG chrI:4908206-4908286 3 2.30e-04 AC ATCTCTCT TCCTCTTTCC chrV:7822749-7822829 56 2.30e-04 AATAATTGCG ATCTCTCT TGTTGCTCCT chrIII:6278692-6278772 33 2.30e-04 TTTTTATACA CTTTCTCG CCAATATTCG chrX:15706225-15706305 1 2.30e-04 . CTTTCTCA GTCCTACACA chrIV:6879095-6879175 9 2.30e-04 CTCGACTG CTCCCTCT CACAGGCAAT chrX:10377826-10377906 3 2.55e-04 GC GTTTCTCT TTGTGAATTC chrX:382830-382910 62 2.55e-04 CGCGCGAGCG GTTTCTCT GTGTGATGCG chrI:9725396-9725476 44 2.55e-04 ctcacatctc gtttctct tttctgcgtg chrX:12877016-12877096 49 3.06e-04 CCGCTTCTTC ATTTCTCT GCTCCTCTTT chrIV:12651733-12651813 11 3.06e-04 TTTCTGTCAT CTTCCTCT TGTTTTGAAG chrX:13975469-13975549 17 3.47e-04 CGTAGTTGAT TTCTCTCG TGACTTCCTT chrX:6739718-6739798 25 4.53e-04 AGCATTCTCA TTTTCTCG CACACGCCTC chrIV:7402234-7402314 41 4.53e-04 GTAGAGCTTC CTGTCTCT GCGTCACCCC chrI:11934315-11934395 34 4.53e-04 TTCTCACATT CTGTCTCT GTTCGTTCCC chrIV:3656109-3656189 57 4.53e-04 TTTTTGGGAT TTTTCTCG GGTTTGTAGT chrI:11140503-11140583 49 4.53e-04 AAAAATACTC TTTTCTCA GGAAGGGACA chrV:15566626-15566706 62 4.71e-04 AACCAAATGG CGTTCTCT GCTCAGTTCG chrII:14044356-14044436 35 4.71e-04 GACTAGACAC CGTTCTCT GTGTCTCGGA chrV:14200176-14200256 59 5.24e-04 TTTCGCAATC GTCTCTCA CACTTTGCCC chrV:20776937-20777017 63 5.24e-04 ACTTCGCATT TTTCCTCT GAAATTGTTG chrII:6839146-6839226 51 5.24e-04 TCATCCCTCT TTTCCTCT TCGCCATCAC chrII:11757001-11757081 68 5.24e-04 GATAAAAAAA TTTCCTCT TAATT chrX:16735094-16735174 10 5.24e-04 atAGACATA GTCTCTCG GAAAAACGGG chrX:1051166-1051246 51 5.24e-04 CAGTCTCTGC GTCTCTCA ATCCATTCTT chrIII:12556263-12556343 54 5.80e-04 GGCTCCAGGC ATCTCTCG TCAAGCTCAA chrI:9113214-9113294 58 5.80e-04 GGTCGCTATA ATCTCTCA TTTTTCTGTC chrIII:10505355-10505435 3 5.97e-04 TC CACTCTCT AACGCGTAGC chrI:12179548-12179628 28 6.48e-04 AGCTTCAGAG GTCCCTCT TCACTAGCTG chrX:4971567-4971647 4 7.89e-04 CCG ATTTCTCA GAGCAGAGAG chrX:13356588-13356668 36 7.89e-04 TTTCGGGGGA ATCCCTCT TATCTCTAGT chrIV:10512837-10512917 21 7.89e-04 GTGTGTCACC CTTCCTCA TCAAGATCAG chrI:12551185-12551265 52 7.89e-04 GCGTCTCACA CTTCCTCA GCCATACAGC chrIV:15814131-15814211 16 7.89e-04 TCATTCGCTC ATTTCTCA TTATTTCTAT chrV:3870524-3870604 2 7.89e-04 A ATTTCTCG TAATGATATG chrIII:671060-671140 51 7.89e-04 GAGAATTGGA ATTTCTCA ACGTCTCGTG chrV:9243736-9243816 17 8.55e-04 CTTTTGTCCA CTCTGTCT CACTCCTCCA chrI:7314472-7314552 2 8.55e-04 A CTCTGTCT TGTGTAAGCG chrI:14924684-14924764 52 8.55e-04 GCGcttcttc ttgtctct tttcatcgtt chrI:6579920-6580000 6 8.72e-04 CTCCC GTTCCTCT ATCTGAGCAT chrV:731402-731482 22 9.58e-04 CAACACACTT TGTTCTCT CCCAGATGAC chrI:2605360-2605440 10 9.58e-04 tttcttctt ctttttct tcttctcact chrV:7728028-7728108 30 9.58e-04 TCGGTTTCCA CTTTTTCT CCTTGATTTA chrX:13555224-13555304 48 9.58e-04 ATCACGTATC TGTTCTCT GATGAGCTCC chrI:9428123-9428203 52 9.58e-04 CATAATGATT TGTTCTCT TGCTTCCGGT chrI:14922733-14922813 61 9.58e-04 TTTTTTTCTT CTTTTTCT CCGACGAGGG chrV:20005861-20005941 46 1.00e-03 CACCGCCTGA CGCTCTCA GTCAACACTG chrIV:11350101-11350181 22 1.00e-03 CTAACATTCA CTTTGTCT TTAATCAGTG chrX:2668004-2668084 12 1.06e-03 CTCTCTAATT TTCCCTCG TGGCGACCCA chrV:10858560-10858640 58 1.06e-03 CGATATTCGT TTCCCTCA ACATCTCTCC chrIV:8629737-8629817 64 1.09e-03 ATGATCCTGA TACTCTCT GGATAGTTT chrIV:5604540-5604620 26 1.27e-03 CAGACACCCC ATGTCTCT CCGCGTGGTT chrII:7325086-7325166 35 1.35e-03 TCAAAAAACA TATTCTCT GCAATTCTAG chrV:10874336-10874416 53 1.35e-03 GTAAAGCTAA TATTCTCT TGTCAAACCT chrII:11836861-11836941 50 1.48e-03 TTTCATCGTT TTTTTTCT AAACGGTGCG chrV:11641465-11641545 23 1.63e-03 ATCTCTCCGT CTCTTTCA CAGGACAGCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTYTCTCT MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:12872439-12872519 1.8e-05 10_[+2]_62 chrIV:2048979-2049059 1.8e-05 69_[+2]_3 chrX:12200681-12200761 1.8e-05 66_[+2]_6 chrIV:14786969-14787049 1.8e-05 9_[+2]_63 chrI:3806663-3806743 1.8e-05 37_[+2]_35 chrI:10839157-10839237 1.8e-05 9_[+2]_63 chrV:20711935-20712015 1.8e-05 29_[+2]_43 chrII:10547987-10548067 1.8e-05 38_[+2]_34 chrI:9097793-9097873 1.8e-05 48_[+2]_24 chrII:4506631-4506711 1.8e-05 4_[+2]_68 chrX:2598976-2599056 1.8e-05 19_[+2]_53 chrI:9095697-9095777 1.8e-05 41_[+2]_31 chrI:9117250-9117330 1.8e-05 65_[+2]_7 chrII:2504578-2504658 1.8e-05 13_[+2]_59 chrI:9092424-9092504 1.8e-05 71_[+2]_1 chrIII:7335379-7335459 4.4e-05 12_[+2]_60 chrI:6835310-6835390 4.4e-05 34_[+2]_38 chrV:12529047-12529127 4.4e-05 29_[+2]_43 chrV:13086073-13086153 4.4e-05 39_[+2]_33 chrI:11937399-11937479 4.4e-05 11_[+2]_61 chrIII:7217233-7217313 4.4e-05 20_[+2]_52 chrV:619224-619304 7e-05 44_[+2]_28 chrI:10145392-10145472 0.00011 1_[+2]_71 chrIV:4093284-4093364 0.00011 23_[+2]_49 chrIII:6897772-6897852 0.00011 42_[+2]_30 chrM:3152-3232 0.00011 43_[+2]_29 chrII:10800350-10800430 0.00011 18_[+2]_54 chrI:6435838-6435918 0.00011 66_[+2]_6 chrIV:6393454-6393534 0.00011 1_[+2]_71 chrIV:8978196-8978276 0.00011 50_[+2]_22 chrI:2024714-2024794 0.00011 61_[+2]_11 chrII:15258765-15258845 0.00011 54_[+2]_18 chrX:13329048-13329128 0.00014 13_[+2]_59 chrIV:10935486-10935566 0.00014 49_[+2]_23 chrIV:11956456-11956536 0.00014 11_[+2]_61 chrIV:4024237-4024317 0.00014 39_[+2]_33 chrI:11840927-11841007 0.00014 54_[+2]_18 chrI:9131991-9132071 0.00014 4_[+2]_68 chrI:9128944-9129024 0.00014 32_[+2]_40 chrII:2832304-2832384 0.00014 42_[+2]_30 chrV:20710300-20710380 0.00015 41_[+2]_31 chrI:9373519-9373599 0.00015 10_[+2]_62 chrIV:7902673-7902753 0.00023 72_[+2] chrI:7954926-7955006 0.00023 [+2]_72 chrI:4908206-4908286 0.00023 2_[+2]_70 chrV:7822749-7822829 0.00023 55_[+2]_17 chrIII:6278692-6278772 0.00023 32_[+2]_40 chrX:15706225-15706305 0.00023 [+2]_72 chrIV:6879095-6879175 0.00023 8_[+2]_64 chrX:10377826-10377906 0.00025 2_[+2]_70 chrX:382830-382910 0.00025 61_[+2]_11 chrI:9725396-9725476 0.00025 43_[+2]_29 chrX:12877016-12877096 0.00031 48_[+2]_24 chrIV:12651733-12651813 0.00031 10_[+2]_62 chrX:13975469-13975549 0.00035 16_[+2]_56 chrX:6739718-6739798 0.00045 24_[+2]_48 chrIV:7402234-7402314 0.00045 40_[+2]_32 chrI:11934315-11934395 0.00045 33_[+2]_39 chrIV:3656109-3656189 0.00045 56_[+2]_16 chrI:11140503-11140583 0.00045 48_[+2]_24 chrV:15566626-15566706 0.00047 61_[+2]_11 chrII:14044356-14044436 0.00047 34_[+2]_38 chrV:14200176-14200256 0.00052 58_[+2]_14 chrV:20776937-20777017 0.00052 62_[+2]_10 chrII:6839146-6839226 0.00052 50_[+2]_22 chrII:11757001-11757081 0.00052 67_[+2]_5 chrX:16735094-16735174 0.00052 9_[+2]_63 chrX:1051166-1051246 0.00052 50_[+2]_22 chrIII:12556263-12556343 0.00058 53_[+2]_19 chrI:9113214-9113294 0.00058 57_[+2]_15 chrIII:10505355-10505435 0.0006 2_[+2]_70 chrI:12179548-12179628 0.00065 27_[+2]_45 chrX:4971567-4971647 0.00079 3_[+2]_69 chrX:13356588-13356668 0.00079 35_[+2]_37 chrIV:10512837-10512917 0.00079 20_[+2]_52 chrI:12551185-12551265 0.00079 51_[+2]_21 chrIV:15814131-15814211 0.00079 15_[+2]_57 chrV:3870524-3870604 0.00079 1_[+2]_71 chrIII:671060-671140 0.00079 50_[+2]_22 chrV:9243736-9243816 0.00085 16_[+2]_56 chrI:7314472-7314552 0.00085 1_[+2]_71 chrI:14924684-14924764 0.00085 51_[+2]_21 chrI:6579920-6580000 0.00087 5_[+2]_67 chrV:731402-731482 0.00096 21_[+2]_51 chrI:2605360-2605440 0.00096 9_[+2]_63 chrV:7728028-7728108 0.00096 29_[+2]_43 chrX:13555224-13555304 0.00096 47_[+2]_25 chrI:9428123-9428203 0.00096 51_[+2]_21 chrI:14922733-14922813 0.00096 60_[+2]_12 chrV:20005861-20005941 0.001 45_[+2]_27 chrIV:11350101-11350181 0.001 21_[+2]_51 chrX:2668004-2668084 0.0011 11_[+2]_61 chrV:10858560-10858640 0.0011 57_[+2]_15 chrIV:8629737-8629817 0.0011 63_[+2]_9 chrIV:5604540-5604620 0.0013 25_[+2]_47 chrII:7325086-7325166 0.0013 34_[+2]_38 chrV:10874336-10874416 0.0013 52_[+2]_20 chrII:11836861-11836941 0.0015 49_[+2]_23 chrV:11641465-11641545 0.0016 22_[+2]_50 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTYTCTCT MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF YTYTCTCT width=8 seqs=99 chrX:12872439-12872519 ( 11) CTCTCTCT 1 chrIV:2048979-2049059 ( 70) CTCTCTCT 1 chrX:12200681-12200761 ( 67) CTCTCTCT 1 chrIV:14786969-14787049 ( 10) CTCTCTCT 1 chrI:3806663-3806743 ( 38) CTCTCTCT 1 chrI:10839157-10839237 ( 10) CTCTCTCT 1 chrV:20711935-20712015 ( 30) CTCTCTCT 1 chrII:10547987-10548067 ( 39) CTCTCTCT 1 chrI:9097793-9097873 ( 49) CTCTCTCT 1 chrII:4506631-4506711 ( 5) CTCTCTCT 1 chrX:2598976-2599056 ( 20) CTCTCTCT 1 chrI:9095697-9095777 ( 42) CTCTCTCT 1 chrI:9117250-9117330 ( 66) CTCTCTCT 1 chrII:2504578-2504658 ( 14) CTCTCTCT 1 chrI:9092424-9092504 ( 72) CTCTCTCT 1 chrIII:7335379-7335459 ( 13) CTTTCTCT 1 chrI:6835310-6835390 ( 35) CTTTCTCT 1 chrV:12529047-12529127 ( 30) CTTTCTCT 1 chrV:13086073-13086153 ( 40) CTTTCTCT 1 chrI:11937399-11937479 ( 12) CTTTCTCT 1 chrIII:7217233-7217313 ( 21) CTTTCTCT 1 chrV:619224-619304 ( 45) TTCTCTCT 1 chrI:10145392-10145472 ( 2) TTTTCTCT 1 chrIV:4093284-4093364 ( 24) TTTTCTCT 1 chrIII:6897772-6897852 ( 43) TTTTCTCT 1 chrM:3152-3232 ( 44) TTTTCTCT 1 chrII:10800350-10800430 ( 19) TTTTCTCT 1 chrI:6435838-6435918 ( 67) TTTTCTCT 1 chrIV:6393454-6393534 ( 2) TTTTCTCT 1 chrIV:8978196-8978276 ( 51) TTTTCTCT 1 chrI:2024714-2024794 ( 62) TTTTCTCT 1 chrII:15258765-15258845 ( 55) TTTTCTCT 1 chrX:13329048-13329128 ( 14) CTCTCTCG 1 chrIV:10935486-10935566 ( 50) CTCTCTCG 1 chrIV:11956456-11956536 ( 12) CTCTCTCA 1 chrIV:4024237-4024317 ( 40) CTCTCTCA 1 chrI:11840927-11841007 ( 55) CTCTCTCG 1 chrI:9131991-9132071 ( 5) CTCTCTCA 1 chrI:9128944-9129024 ( 33) CTCTCTCA 1 chrII:2832304-2832384 ( 43) CTCTCTCG 1 chrV:20710300-20710380 ( 42) GTCTCTCT 1 chrI:9373519-9373599 ( 11) GTCTCTCT 1 chrIV:7902673-7902753 ( 73) CTTTCTCG 1 chrI:7954926-7955006 ( 1) ATCTCTCT 1 chrI:4908206-4908286 ( 3) ATCTCTCT 1 chrV:7822749-7822829 ( 56) ATCTCTCT 1 chrIII:6278692-6278772 ( 33) CTTTCTCG 1 chrX:15706225-15706305 ( 1) CTTTCTCA 1 chrIV:6879095-6879175 ( 9) CTCCCTCT 1 chrX:10377826-10377906 ( 3) GTTTCTCT 1 chrX:382830-382910 ( 62) GTTTCTCT 1 chrI:9725396-9725476 ( 44) GTTTCTCT 1 chrX:12877016-12877096 ( 49) ATTTCTCT 1 chrIV:12651733-12651813 ( 11) CTTCCTCT 1 chrX:13975469-13975549 ( 17) TTCTCTCG 1 chrX:6739718-6739798 ( 25) TTTTCTCG 1 chrIV:7402234-7402314 ( 41) CTGTCTCT 1 chrI:11934315-11934395 ( 34) CTGTCTCT 1 chrIV:3656109-3656189 ( 57) TTTTCTCG 1 chrI:11140503-11140583 ( 49) TTTTCTCA 1 chrV:15566626-15566706 ( 62) CGTTCTCT 1 chrII:14044356-14044436 ( 35) CGTTCTCT 1 chrV:14200176-14200256 ( 59) GTCTCTCA 1 chrV:20776937-20777017 ( 63) TTTCCTCT 1 chrII:6839146-6839226 ( 51) TTTCCTCT 1 chrII:11757001-11757081 ( 68) TTTCCTCT 1 chrX:16735094-16735174 ( 10) GTCTCTCG 1 chrX:1051166-1051246 ( 51) GTCTCTCA 1 chrIII:12556263-12556343 ( 54) ATCTCTCG 1 chrI:9113214-9113294 ( 58) ATCTCTCA 1 chrIII:10505355-10505435 ( 3) CACTCTCT 1 chrI:12179548-12179628 ( 28) GTCCCTCT 1 chrX:4971567-4971647 ( 4) ATTTCTCA 1 chrX:13356588-13356668 ( 36) ATCCCTCT 1 chrIV:10512837-10512917 ( 21) CTTCCTCA 1 chrI:12551185-12551265 ( 52) CTTCCTCA 1 chrIV:15814131-15814211 ( 16) ATTTCTCA 1 chrV:3870524-3870604 ( 2) ATTTCTCG 1 chrIII:671060-671140 ( 51) ATTTCTCA 1 chrV:9243736-9243816 ( 17) CTCTGTCT 1 chrI:7314472-7314552 ( 2) CTCTGTCT 1 chrI:14924684-14924764 ( 52) TTGTCTCT 1 chrI:6579920-6580000 ( 6) GTTCCTCT 1 chrV:731402-731482 ( 22) TGTTCTCT 1 chrI:2605360-2605440 ( 10) CTTTTTCT 1 chrV:7728028-7728108 ( 30) CTTTTTCT 1 chrX:13555224-13555304 ( 48) TGTTCTCT 1 chrI:9428123-9428203 ( 52) TGTTCTCT 1 chrI:14922733-14922813 ( 61) CTTTTTCT 1 chrV:20005861-20005941 ( 46) CGCTCTCA 1 chrIV:11350101-11350181 ( 22) CTTTGTCT 1 chrX:2668004-2668084 ( 12) TTCCCTCG 1 chrV:10858560-10858640 ( 58) TTCCCTCA 1 chrIV:8629737-8629817 ( 64) TACTCTCT 1 chrIV:5604540-5604620 ( 26) ATGTCTCT 1 chrII:7325086-7325166 ( 35) TATTCTCT 1 chrV:10874336-10874416 ( 53) TATTCTCT 1 chrII:11836861-11836941 ( 50) TTTTTTCT 1 chrV:11641465-11641545 ( 23) CTCTTTCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTYTCTCT MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.12623 E= 4.0e-015 -118 122 -103 -11 -277 -1327 -177 156 -1327 113 -235 70 -1327 -81 -1327 152 -1327 211 -277 -260 -1327 -1327 -1327 171 -1327 223 -1327 -1327 -68 -1327 -65 119 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTYTCTCT MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 99 E= 4.0e-015 0.121212 0.494949 0.101010 0.282828 0.040404 0.000000 0.060606 0.898990 0.000000 0.464646 0.040404 0.494949 0.000000 0.121212 0.000000 0.878788 0.000000 0.919192 0.030303 0.050505 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.171717 0.000000 0.131313 0.696970 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTYTCTCT MEME-2 regular expression -------------------------------------------------------------------------------- [CT]T[TC]TCTCT -------------------------------------------------------------------------------- Time 12.44 secs. ******************************************************************************** ******************************************************************************** MOTIF TGACGTCA MEME-3 width = 8 sites = 20 llr = 202 E-value = 5.3e-008 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGACGTCA MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::a:::1a pos.-specific C :::a:19: probability G :a::9::: matrix T a::11a:: bits 2.3 * 2.1 * 1.8 ***** ** 1.6 ***** ** Relative 1.4 ******** Entropy 1.1 ******** (14.6 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TGACGTCA consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGACGTCA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIV:11350101-11350181 42 1.36e-05 AATCAGTGAT TGACGTCA TAAATCTCAT chrV:20711935-20712015 3 1.36e-05 CT TGACGTCA GCGtctcttc chrV:3716441-3716521 50 1.36e-05 CAATCCTTGA TGACGTCA TCTGACGTGC chrIV:7902673-7902753 47 1.36e-05 CGACTCTGAG TGACGTCA CCAGACATTT chrI:4908206-4908286 33 1.36e-05 TTTTGTTGAA TGACGTCA TTTGGTTCTC chrX:15386141-15386221 39 1.36e-05 TGCTTGTTGA TGACGTCA TCTCACTTGA chrI:7480232-7480312 58 1.36e-05 CATTGTGAAA TGACGTCA TTCCCCTTTC chrI:9725396-9725476 19 1.36e-05 GGATCCCGAA TGACGTCA Ttctcttctc chrIV:3647761-3647841 69 1.36e-05 TGATGCCAAT TGACGTCA CTTG chrII:2832304-2832384 16 1.36e-05 GACAACACAG TGACGTCA CCTGTTCGTT chrIII:5758844-5758924 59 1.36e-05 AAGCGGACGA TGACGTCA TTCAAATTCA chrI:9428123-9428203 36 1.36e-05 TTTTTAGTTC TGACGTCA TAATGATTTG chrX:1453987-1454067 33 1.36e-05 AGTGAAATGA TGACGTCA TTGCCGCCGA chrII:3897896-3897976 65 1.36e-05 ATAAATTCTA TGACGTCA ATGAGTGT chrX:7478919-7478999 42 3.12e-05 GCCTTTCCAT TGACGTAA ACGAGGCTTG chrIV:17285475-17285555 13 3.12e-05 ACGTCACTCA TGACGTAA TACTGAATTC chrV:15566626-15566706 30 6.10e-05 TACACCCATG TGACTTCA TCTCCCCAGT chrI:3822800-3822880 65 6.10e-05 GTGATTCTCG TGACTTCA CATAAGCA chrX:14562454-14562534 53 6.10e-05 AGGGAACAAA TGACGCCA TTGGAGAAGA chrX:4142305-4142385 69 8.06e-05 AAGTTGAGAC TGATGTCA GAGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGACGTCA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:11350101-11350181 1.4e-05 41_[+3]_31 chrV:20711935-20712015 1.4e-05 2_[+3]_70 chrV:3716441-3716521 1.4e-05 49_[+3]_23 chrIV:7902673-7902753 1.4e-05 46_[+3]_26 chrI:4908206-4908286 1.4e-05 32_[+3]_40 chrX:15386141-15386221 1.4e-05 38_[+3]_34 chrI:7480232-7480312 1.4e-05 57_[+3]_15 chrI:9725396-9725476 1.4e-05 18_[+3]_54 chrIV:3647761-3647841 1.4e-05 68_[+3]_4 chrII:2832304-2832384 1.4e-05 15_[+3]_57 chrIII:5758844-5758924 1.4e-05 58_[+3]_14 chrI:9428123-9428203 1.4e-05 35_[+3]_37 chrX:1453987-1454067 1.4e-05 32_[+3]_40 chrII:3897896-3897976 1.4e-05 64_[+3]_8 chrX:7478919-7478999 3.1e-05 41_[+3]_31 chrIV:17285475-17285555 3.1e-05 12_[+3]_60 chrV:15566626-15566706 6.1e-05 29_[+3]_43 chrI:3822800-3822880 6.1e-05 64_[+3]_8 chrX:14562454-14562534 6.1e-05 52_[+3]_20 chrX:4142305-4142385 8.1e-05 68_[+3]_4 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGACGTCA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGACGTCA width=8 seqs=20 chrIV:11350101-11350181 ( 42) TGACGTCA 1 chrV:20711935-20712015 ( 3) TGACGTCA 1 chrV:3716441-3716521 ( 50) TGACGTCA 1 chrIV:7902673-7902753 ( 47) TGACGTCA 1 chrI:4908206-4908286 ( 33) TGACGTCA 1 chrX:15386141-15386221 ( 39) TGACGTCA 1 chrI:7480232-7480312 ( 58) TGACGTCA 1 chrI:9725396-9725476 ( 19) TGACGTCA 1 chrIV:3647761-3647841 ( 69) TGACGTCA 1 chrII:2832304-2832384 ( 16) TGACGTCA 1 chrIII:5758844-5758924 ( 59) TGACGTCA 1 chrI:9428123-9428203 ( 36) TGACGTCA 1 chrX:1453987-1454067 ( 33) TGACGTCA 1 chrII:3897896-3897976 ( 65) TGACGTCA 1 chrX:7478919-7478999 ( 42) TGACGTAA 1 chrIV:17285475-17285555 ( 13) TGACGTAA 1 chrV:15566626-15566706 ( 30) TGACTTCA 1 chrI:3822800-3822880 ( 65) TGACTTCA 1 chrX:14562454-14562534 ( 53) TGACGCCA 1 chrX:4142305-4142385 ( 69) TGATGTCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGACGTCA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.0839 E= 5.3e-008 -1097 -1097 -1097 171 -1097 -1097 228 -1097 186 -1097 -1097 -1097 -1097 216 -1097 -261 -1097 -1097 213 -161 -1097 -209 -1097 164 -146 208 -1097 -1097 186 -1097 -1097 -1097 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGACGTCA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 20 E= 5.3e-008 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.950000 0.000000 0.050000 0.000000 0.000000 0.900000 0.100000 0.000000 0.050000 0.000000 0.950000 0.100000 0.900000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGACGTCA MEME-3 regular expression -------------------------------------------------------------------------------- TGACGTCA -------------------------------------------------------------------------------- Time 15.84 secs. ******************************************************************************** ******************************************************************************** MOTIF CTGCGTCT MEME-4 width = 8 sites = 16 llr = 170 E-value = 1.1e-006 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTGCGTCT MEME-4 Description -------------------------------------------------------------------------------- Simplified A ::1:::1: pos.-specific C a::a::9: probability G ::9:9::: matrix T :a::1a:a bits 2.3 * * 2.1 * * 1.8 ******** 1.6 ******** Relative 1.4 ******** Entropy 1.1 ******** (15.3 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CTGCGTCT consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCGTCT MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrV:619224-619304 5 1.17e-05 CTCT CTGCGTCT CTTCTCCTCC chrI:2864089-2864169 53 1.17e-05 CTCCACGTGT CTGCGTCT CCACCTCGTC chrI:12164820-12164900 50 1.17e-05 GCAGGCATTT CTGCGTCT CCTCTTGGGG chrV:13086073-13086153 9 1.17e-05 TTCGGGCG CTGCGTCT CCCACAACGG chrI:12551185-12551265 40 1.17e-05 CTGTAACAGT CTGCGTCT CACACTTCCT chrIV:8629737-8629817 42 1.17e-05 GTATAACTGG CTGCGTCT ATACATGATC chrI:11934315-11934395 10 1.17e-05 TCTGTGTGT CTGCGTCT CTTCAGTTCT chrI:9113214-9113294 5 1.17e-05 GGCT CTGCGTCT CTTCAGTAGC chrI:9725396-9725476 73 1.17e-05 acgtacgtgt ctgcgtct chrV:1805109-1805189 7 1.17e-05 TTCCGT CTGCGTCT CTTTGCACCC chrI:10327756-10327836 71 1.17e-05 CTCTCCTTCT CTGCGTCT CT chrII:1085085-1085165 67 1.17e-05 AAAAAGAAGC CTGCGTCT CTTATC chrII:3897061-3897141 58 1.17e-05 CTCTAACTAT CTGCGTCT AGTGCCCTTT chrI:2292931-2293011 52 2.69e-05 ATTTGGGTGT CTGCGTAT TCGTGTGCGT chrIV:8587818-8587898 35 4.26e-05 TGACTAACTC CTACGTCT CATCACAGAC chrIV:3656109-3656189 29 6.01e-05 TTCTTGACAA CTGCTTCT TTTTTTGTTA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCGTCT MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:619224-619304 1.2e-05 4_[+4]_68 chrI:2864089-2864169 1.2e-05 52_[+4]_20 chrI:12164820-12164900 1.2e-05 49_[+4]_23 chrV:13086073-13086153 1.2e-05 8_[+4]_64 chrI:12551185-12551265 1.2e-05 39_[+4]_33 chrIV:8629737-8629817 1.2e-05 41_[+4]_31 chrI:11934315-11934395 1.2e-05 9_[+4]_63 chrI:9113214-9113294 1.2e-05 4_[+4]_68 chrI:9725396-9725476 1.2e-05 72_[+4] chrV:1805109-1805189 1.2e-05 6_[+4]_66 chrI:10327756-10327836 1.2e-05 70_[+4]_2 chrII:1085085-1085165 1.2e-05 66_[+4]_6 chrII:3897061-3897141 1.2e-05 57_[+4]_15 chrI:2292931-2293011 2.7e-05 51_[+4]_21 chrIV:8587818-8587898 4.3e-05 34_[+4]_38 chrIV:3656109-3656189 6e-05 28_[+4]_44 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCGTCT MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTGCGTCT width=8 seqs=16 chrV:619224-619304 ( 5) CTGCGTCT 1 chrI:2864089-2864169 ( 53) CTGCGTCT 1 chrI:12164820-12164900 ( 50) CTGCGTCT 1 chrV:13086073-13086153 ( 9) CTGCGTCT 1 chrI:12551185-12551265 ( 40) CTGCGTCT 1 chrIV:8629737-8629817 ( 42) CTGCGTCT 1 chrI:11934315-11934395 ( 10) CTGCGTCT 1 chrI:9113214-9113294 ( 5) CTGCGTCT 1 chrI:9725396-9725476 ( 73) CTGCGTCT 1 chrV:1805109-1805189 ( 7) CTGCGTCT 1 chrI:10327756-10327836 ( 71) CTGCGTCT 1 chrII:1085085-1085165 ( 67) CTGCGTCT 1 chrII:3897061-3897141 ( 58) CTGCGTCT 1 chrI:2292931-2293011 ( 52) CTGCGTAT 1 chrIV:8587818-8587898 ( 35) CTACGTCT 1 chrIV:3656109-3656189 ( 29) CTGCTTCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCGTCT MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.1543 E= 1.1e-006 -1064 223 -1064 -1064 -1064 -1064 -1064 171 -214 -1064 218 -1064 -1064 223 -1064 -1064 -1064 -1064 218 -229 -1064 -1064 -1064 171 -214 214 -1064 -1064 -1064 -1064 -1064 171 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCGTCT MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 16 E= 1.1e-006 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.062500 0.000000 0.937500 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.937500 0.062500 0.000000 0.000000 0.000000 1.000000 0.062500 0.937500 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCGTCT MEME-4 regular expression -------------------------------------------------------------------------------- CTGCGTCT -------------------------------------------------------------------------------- Time 19.22 secs. ******************************************************************************** ******************************************************************************** MOTIF SASACRCR MEME-5 width = 8 sites = 59 llr = 440 E-value = 2.4e-004 ******************************************************************************** -------------------------------------------------------------------------------- Motif SASACRCR MEME-5 Description -------------------------------------------------------------------------------- Simplified A :a:a26:5 pos.-specific C 5:4:71a2 probability G 5:6:24:3 matrix T :::::::: bits 2.3 * 2.1 * 1.8 * * * 1.6 * * * Relative 1.4 **** * Entropy 1.1 **** * (10.8 bits) 0.9 ***** * 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GAGACACA consensus C C G G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SASACRCR MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:4971567-4971647 35 3.06e-05 AGTGTACCGG GAGACGCA GTCAGAGGTT chrIV:13395362-13395442 16 3.06e-05 TCCCCGCGTC GAGACGCA GAGGCGTCAC chrV:4143273-4143353 50 3.06e-05 GCGTTTCGCA GAGACGCA GAGATTCGAG chrIV:10512837-10512917 65 3.06e-05 ATTGTGAATG GAGACGCA GACATCAA chrI:14939928-14940008 60 3.06e-05 GTATGATGAA GAGACGCA GTGTGCCGAG chrIV:15696981-15697061 52 3.06e-05 AGAGAGGACA GAGACGCA GAGAACGAAA chrI:5377663-5377743 5 3.06e-05 AGTG GAGACGCA GATCCTAGAG chrIII:5758844-5758924 28 3.06e-05 GTTGAGCCGA GAGACGCA GGCAAACCGA chrI:12571954-12572034 30 3.06e-05 GCGACAACAG GAGACGCA GAGAAGCAGA chrIV:6881298-6881378 3 5.03e-05 GT GACACACA CACATTGTGC chrIV:4034976-4035056 7 5.03e-05 AGGGGC GACACACA CTGGGTGGAG chrV:20005861-20005941 63 5.03e-05 AGTCAACACT GAGACACG AGAGATATGG chrIV:3741248-3741328 4 5.03e-05 TTT GAGACACG TGCAATTTCG chrII:4506631-4506711 50 5.03e-05 TGTTGgacga gagacacg tgagagcaag chrI:2024714-2024794 11 5.03e-05 ATTTCGGAGC GACACACA CACACACAAC chrV:10174762-10174842 64 9.38e-05 TAGGCATTca cacacaca catacacac chrIV:4471596-4471676 18 9.38e-05 AAAAAGACTG GAGACGCG AGAGATGCAG chrV:7728028-7728108 72 9.38e-05 CTCGCGCACA CACACACA T chrIV:15814131-15814211 50 9.38e-05 cacaaacaca cacacaca caccagacac chrIV:7242572-7242652 5 9.38e-05 AGCA CAGACACG TGGTAGAGCA chrX:3116406-3116486 9 1.02e-04 ACGTCGCC GACACACG ATTGCTGGCC chrX:382830-382910 48 1.18e-04 CGGAACAATG CAGACGCG CGAGCGGTTT chrIII:86493-86573 45 1.18e-04 GGAGCGTCGT CAGACGCG CGCTGCGAGA chrII:13681143-13681223 31 1.33e-04 CATCATCGTT CACACACG TGTCGGGGAG chrX:10377826-10377906 25 1.33e-04 GAATTCAGCT GACACGCG ACTGAACGAC chrI:10327756-10327836 49 1.33e-04 GCAAAGAAAG CACACACG ACTTCTCTCC chrX:13768626-13768706 69 1.48e-04 TCATCTACGT CACACGCG CACT chrIII:3991532-3991612 61 1.48e-04 AAGTGGTGTA GAGACACC ACCAGTAGGA chrIV:5604540-5604620 16 1.63e-04 TCTCCTGCTC CAGACACC CCATGTCTCT chrI:9131991-9132071 21 1.63e-04 cactcATCGT CAGACACC ACCACTTATC chrV:4507930-4508010 56 1.89e-04 TTGGCTGGCA GAGAGACA GCCTTGGCAA chrV:13909554-13909634 45 2.19e-04 GACTTGAAAA CACACACC AATCAACTGA chrIV:12651733-12651813 66 2.19e-04 atgagagaga gagaAACA AAATTCC chrX:15706225-15706305 15 2.19e-04 CTCAGTCCTA CACACACC CGATCAATTT chrM:3982-4062 34 2.19e-04 TTTATTAATT GAGAAACA ACATTAGTAT chrI:11140503-11140583 20 2.19e-04 CTCCTTTCAA CACACACC CCCCATCTCC chrX:12872439-12872519 50 2.47e-04 GAAAATAAGG CAGAGACA TAGACAATTG chrIV:11956456-11956536 33 2.47e-04 TCAACGATTA GAGACCCA CGTGGGTGAG chrIII:12978924-12979004 67 2.98e-04 CCGCGAAATT GAGAGACG GCGAAA chrI:7861561-7861641 66 2.98e-04 GAGGAGTTTC GAGAGACG ATTGAGA chrX:6739718-6739798 33 2.98e-04 CATTTTCTCG CACACGCC TCGATCCAAT chrI:9428123-9428203 9 2.98e-04 TGATAAAT CAGAAACA TGAAATCTAT chrX:2348112-2348192 52 2.98e-04 GGACAGAGTG CAGAAACA ATTTATCAGG chrII:10547987-10548067 61 3.40e-04 ctctATTCGT GACAAACA ATAAACAGAA chrIII:8658496-8658576 40 4.00e-04 AAGAGAAAGA CAGAGACG TGTTTACCAC chrIV:9196897-9196977 52 4.00e-04 GGGGAAGCCG CAGAAGCA GCAGCAGTCG chrII:13066937-13067017 19 4.00e-04 GAAAATAAAT GACACCCA AGAGCGCGCA chrIII:8782246-8782326 27 4.00e-04 CATCCGCCCT CACAGACA TCTCGCGAAA chrII:1085085-1085165 37 4.00e-04 TGTCGTCGCG GACACCCA ACCCTCGTCA chrIV:8587818-8587898 46 4.00e-04 TACGTCTCAT CACAGACA CTTTTTGTCT chrI:8580273-8580353 52 4.00e-04 GGAAAACAGA CAGAAGCA CAAGAAAGAA chrI:12164820-12164900 33 4.54e-04 TTGGAGAAGT GAGAAGCG CAGGCATTTC chrII:14044356-14044436 18 4.54e-04 GGCACGTGAT GACAGACG ACTAGACACC chrI:4941215-4941295 65 4.95e-04 CTGATATTCC GACAAACG CAACAGCT chrX:2598976-2599056 4 4.95e-04 ACG CACACCCA Atctctcact chrIV:6879095-6879175 17 4.95e-04 TGCTCCCTCT CACAGGCA ATTCACGTGA chrII:11836861-11836941 19 5.36e-04 CATACAACAT CACAAGCA CCATTCTTAT chrII:11778202-11778282 24 6.18e-04 CACTGCAGTG GAGACCCC TCTGTGCCTT chrII:760837-760917 22 7.01e-04 TAAATATATC CAGAAGCC CATGTAATAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SASACRCR MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:4971567-4971647 3.1e-05 34_[+5]_38 chrIV:13395362-13395442 3.1e-05 15_[+5]_57 chrV:4143273-4143353 3.1e-05 49_[+5]_23 chrIV:10512837-10512917 3.1e-05 64_[+5]_8 chrI:14939928-14940008 3.1e-05 59_[+5]_13 chrIV:15696981-15697061 3.1e-05 51_[+5]_21 chrI:5377663-5377743 3.1e-05 4_[+5]_68 chrIII:5758844-5758924 3.1e-05 27_[+5]_45 chrI:12571954-12572034 3.1e-05 29_[+5]_43 chrIV:6881298-6881378 5e-05 2_[+5]_70 chrIV:4034976-4035056 5e-05 6_[+5]_66 chrV:20005861-20005941 5e-05 62_[+5]_10 chrIV:3741248-3741328 5e-05 3_[+5]_69 chrII:4506631-4506711 5e-05 49_[+5]_23 chrI:2024714-2024794 5e-05 10_[+5]_62 chrV:10174762-10174842 9.4e-05 63_[+5]_9 chrIV:4471596-4471676 9.4e-05 17_[+5]_55 chrV:7728028-7728108 9.4e-05 71_[+5]_1 chrIV:15814131-15814211 9.4e-05 49_[+5]_23 chrIV:7242572-7242652 9.4e-05 4_[+5]_68 chrX:3116406-3116486 0.0001 8_[+5]_64 chrX:382830-382910 0.00012 47_[+5]_25 chrIII:86493-86573 0.00012 44_[+5]_28 chrII:13681143-13681223 0.00013 30_[+5]_42 chrX:10377826-10377906 0.00013 24_[+5]_48 chrI:10327756-10327836 0.00013 48_[+5]_24 chrX:13768626-13768706 0.00015 68_[+5]_4 chrIII:3991532-3991612 0.00015 60_[+5]_12 chrIV:5604540-5604620 0.00016 15_[+5]_57 chrI:9131991-9132071 0.00016 20_[+5]_52 chrV:4507930-4508010 0.00019 55_[+5]_17 chrV:13909554-13909634 0.00022 44_[+5]_28 chrIV:12651733-12651813 0.00022 65_[+5]_7 chrX:15706225-15706305 0.00022 14_[+5]_58 chrM:3982-4062 0.00022 33_[+5]_39 chrI:11140503-11140583 0.00022 19_[+5]_53 chrX:12872439-12872519 0.00025 49_[+5]_23 chrIV:11956456-11956536 0.00025 32_[+5]_40 chrIII:12978924-12979004 0.0003 66_[+5]_6 chrI:7861561-7861641 0.0003 65_[+5]_7 chrX:6739718-6739798 0.0003 32_[+5]_40 chrI:9428123-9428203 0.0003 8_[+5]_64 chrX:2348112-2348192 0.0003 51_[+5]_21 chrII:10547987-10548067 0.00034 60_[+5]_12 chrIII:8658496-8658576 0.0004 39_[+5]_33 chrIV:9196897-9196977 0.0004 51_[+5]_21 chrII:13066937-13067017 0.0004 18_[+5]_54 chrIII:8782246-8782326 0.0004 26_[+5]_46 chrII:1085085-1085165 0.0004 36_[+5]_36 chrIV:8587818-8587898 0.0004 45_[+5]_27 chrI:8580273-8580353 0.0004 51_[+5]_21 chrI:12164820-12164900 0.00045 32_[+5]_40 chrII:14044356-14044436 0.00045 17_[+5]_55 chrI:4941215-4941295 0.0005 64_[+5]_8 chrX:2598976-2599056 0.0005 3_[+5]_69 chrIV:6879095-6879175 0.0005 16_[+5]_56 chrII:11836861-11836941 0.00054 18_[+5]_54 chrII:11778202-11778282 0.00062 23_[+5]_49 chrII:760837-760917 0.0007 21_[+5]_51 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SASACRCR MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF SASACRCR width=8 seqs=59 chrX:4971567-4971647 ( 35) GAGACGCA 1 chrIV:13395362-13395442 ( 16) GAGACGCA 1 chrV:4143273-4143353 ( 50) GAGACGCA 1 chrIV:10512837-10512917 ( 65) GAGACGCA 1 chrI:14939928-14940008 ( 60) GAGACGCA 1 chrIV:15696981-15697061 ( 52) GAGACGCA 1 chrI:5377663-5377743 ( 5) GAGACGCA 1 chrIII:5758844-5758924 ( 28) GAGACGCA 1 chrI:12571954-12572034 ( 30) GAGACGCA 1 chrIV:6881298-6881378 ( 3) GACACACA 1 chrIV:4034976-4035056 ( 7) GACACACA 1 chrV:20005861-20005941 ( 63) GAGACACG 1 chrIV:3741248-3741328 ( 4) GAGACACG 1 chrII:4506631-4506711 ( 50) GAGACACG 1 chrI:2024714-2024794 ( 11) GACACACA 1 chrV:10174762-10174842 ( 64) CACACACA 1 chrIV:4471596-4471676 ( 18) GAGACGCG 1 chrV:7728028-7728108 ( 72) CACACACA 1 chrIV:15814131-15814211 ( 50) CACACACA 1 chrIV:7242572-7242652 ( 5) CAGACACG 1 chrX:3116406-3116486 ( 9) GACACACG 1 chrX:382830-382910 ( 48) CAGACGCG 1 chrIII:86493-86573 ( 45) CAGACGCG 1 chrII:13681143-13681223 ( 31) CACACACG 1 chrX:10377826-10377906 ( 25) GACACGCG 1 chrI:10327756-10327836 ( 49) CACACACG 1 chrX:13768626-13768706 ( 69) CACACGCG 1 chrIII:3991532-3991612 ( 61) GAGACACC 1 chrIV:5604540-5604620 ( 16) CAGACACC 1 chrI:9131991-9132071 ( 21) CAGACACC 1 chrV:4507930-4508010 ( 56) GAGAGACA 1 chrV:13909554-13909634 ( 45) CACACACC 1 chrIV:12651733-12651813 ( 66) GAGAAACA 1 chrX:15706225-15706305 ( 15) CACACACC 1 chrM:3982-4062 ( 34) GAGAAACA 1 chrI:11140503-11140583 ( 20) CACACACC 1 chrX:12872439-12872519 ( 50) CAGAGACA 1 chrIV:11956456-11956536 ( 33) GAGACCCA 1 chrIII:12978924-12979004 ( 67) GAGAGACG 1 chrI:7861561-7861641 ( 66) GAGAGACG 1 chrX:6739718-6739798 ( 33) CACACGCC 1 chrI:9428123-9428203 ( 9) CAGAAACA 1 chrX:2348112-2348192 ( 52) CAGAAACA 1 chrII:10547987-10548067 ( 61) GACAAACA 1 chrIII:8658496-8658576 ( 40) CAGAGACG 1 chrIV:9196897-9196977 ( 52) CAGAAGCA 1 chrII:13066937-13067017 ( 19) GACACCCA 1 chrIII:8782246-8782326 ( 27) CACAGACA 1 chrII:1085085-1085165 ( 37) GACACCCA 1 chrIV:8587818-8587898 ( 46) CACAGACA 1 chrI:8580273-8580353 ( 52) CAGAAGCA 1 chrI:12164820-12164900 ( 33) GAGAAGCG 1 chrII:14044356-14044436 ( 18) GACAGACG 1 chrI:4941215-4941295 ( 65) GACAAACG 1 chrX:2598976-2599056 ( 4) CACACCCA 1 chrIV:6879095-6879175 ( 17) CACAGGCA 1 chrII:11836861-11836941 ( 19) CACAAGCA 1 chrII:11778202-11778282 ( 24) GAGACCCC 1 chrII:760837-760917 ( 22) CAGAAGCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SASACRCR MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.9683 E= 2.4e-004 -1253 111 140 -1253 186 -1253 -1253 -1253 -1253 99 148 -1253 186 -1253 -1253 -1253 -56 164 -43 -1253 102 -133 79 -1253 -1253 223 -1253 -1253 98 -48 57 -1253 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SASACRCR MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 59 E= 2.4e-004 0.000000 0.457627 0.542373 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.423729 0.576271 0.000000 1.000000 0.000000 0.000000 0.000000 0.186441 0.661017 0.152542 0.000000 0.559322 0.084746 0.355932 0.000000 0.000000 1.000000 0.000000 0.000000 0.542373 0.152542 0.305085 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SASACRCR MEME-5 regular expression -------------------------------------------------------------------------------- [GC]A[GC]AC[AG]C[AG] -------------------------------------------------------------------------------- Time 22.63 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:3026070-3026150 2.96e-01 80 chrX:2348112-2348192 1.09e-01 80 chrIV:3030042-3030122 6.78e-01 80 chrI:14922733-14922813 4.99e-01 80 chrII:15258765-15258845 1.10e-01 80 chrIV:8605448-8605528 4.97e-01 80 chrI:9092424-9092504 1.07e-03 28_[+1(3.18e-05)]_27_[+2(1.80e-05)]_\ [+2(1.80e-05)]_1 chrIII:13456019-13456099 4.87e-01 80 chrI:8580273-8580353 3.91e-02 33_[+1(5.58e-05)]_39 chrII:2504578-2504658 1.25e-03 19_[+4(1.17e-05)]_53 chrV:9128795-9128875 1.96e-02 80 chrI:12571954-12572034 2.01e-02 29_[+5(3.06e-05)]_43 chrI:9117250-9117330 8.11e-02 2_[+2(6.99e-05)]_55_[+2(1.80e-05)]_\ 7 chrI:9095697-9095777 1.60e-01 39_[+2(1.80e-05)]_33 chrX:14562454-14562534 8.93e-03 52_[+3(6.10e-05)]_20 chrII:3897896-3897976 7.15e-04 64_[+3(1.36e-05)]_8 chrI:6569365-6569445 1.64e-01 57_[+1(8.45e-05)]_15 chrII:3897061-3897141 4.78e-02 57_[+4(1.17e-05)]_15 chrM:8629-8709 3.15e-01 80 chrI:14924684-14924764 7.07e-03 34_[+1(4.21e-05)]_38 chrM:257-337 8.76e-01 80 chrI:2024714-2024794 1.64e-03 10_[+5(5.03e-05)]_[+5(9.38e-05)]_54 chrIV:8587818-8587898 2.86e-04 34_[+4(4.26e-05)]_38 chrX:6825985-6826065 4.42e-02 80 chrX:1453987-1454067 2.20e-02 32_[+3(1.36e-05)]_40 chrM:11772-11852 8.91e-01 80 chrI:9428123-9428203 7.76e-04 35_[+3(1.36e-05)]_37 chrX:6735643-6735723 5.28e-01 80 chrIV:17285475-17285555 1.39e-01 12_[+3(3.12e-05)]_60 chrI:11140503-11140583 4.67e-02 80 chrI:14945643-14945723 1.61e-01 1_[+2(1.80e-05)]_[+2(1.80e-05)]_\ [+2(1.80e-05)]_[+2(1.80e-05)]_[+2(1.80e-05)]_39 chrII:4494738-4494818 1.12e-01 80 chrX:12201943-12202023 7.38e-01 80 chrIII:671060-671140 3.60e-02 80 chrM:5534-5614 6.80e-01 80 chrIV:7242572-7242652 2.83e-02 4_[+5(9.38e-05)]_68 chrM:1594-1674 7.46e-01 80 chrM:3982-4062 2.26e-01 80 chrV:12636471-12636551 2.36e-01 80 chrIV:10507733-10507813 2.48e-01 80 chrII:5663635-5663715 1.69e-01 80 chrV:6229010-6229090 9.58e-01 80 chrV:9561938-9562018 1.10e-01 68_[+1(3.18e-05)]_4 chrM:11498-11578 9.79e-01 80 chrM:7767-7847 9.80e-01 80 chrX:3839410-3839490 9.91e-02 80 chrIII:6988219-6988299 4.62e-01 80 chrIV:6879095-6879175 2.86e-02 80 chrX:7478919-7478999 8.18e-02 41_[+3(3.12e-05)]_31 chrX:16730558-16730638 5.06e-01 80 chrIII:5758844-5758924 6.65e-04 27_[+5(3.06e-05)]_23_[+3(1.36e-05)]_\ 14 chrX:12878107-12878187 1.60e-01 80 chrI:9373519-9373599 2.95e-02 80 chrII:2832304-2832384 3.60e-03 15_[+3(1.36e-05)]_57 chrIV:3647761-3647841 1.35e-01 68_[+3(1.36e-05)]_4 chrV:3259322-3259402 2.09e-01 80 chrM:5747-5827 9.78e-01 80 chrII:1085085-1085165 1.55e-04 66_[+4(1.17e-05)]_6 chrV:10874336-10874416 4.62e-01 80 chrII:7325086-7325166 1.66e-01 80 chrX:1054059-1054139 4.79e-01 80 chrIV:3656109-3656189 4.23e-02 28_[+4(6.01e-05)]_44 chrX:3945188-3945268 4.67e-01 80 chrV:3870524-3870604 3.26e-01 80 chrI:9111037-9111117 6.53e-03 40_[+1(4.21e-05)]_32 chrII:760837-760917 2.57e-01 80 chrII:11762033-11762113 3.80e-01 80 chrIII:7217233-7217313 9.03e-02 20_[+2(4.40e-05)]_52 chrM:6446-6526 9.95e-01 80 chrIV:8978196-8978276 1.12e-02 80 chrI:1062074-1062154 1.22e-01 7_[+1(9.82e-05)]_65 chrIII:5623575-5623655 9.39e-01 80 chrIV:2279059-2279139 6.83e-01 80 chrIV:4477302-4477382 2.67e-01 80 chrI:10327756-10327836 1.24e-05 70_[+4(1.17e-05)]_2 chrX:13555224-13555304 2.19e-02 10_[+1(8.45e-05)]_62 chrI:7314472-7314552 3.52e-01 80 chrM:9550-9630 5.17e-01 80 chrV:6630867-6630947 9.97e-01 80 chrX:15706225-15706305 2.14e-02 80 chrIII:8782246-8782326 1.27e-01 80 chrI:5377663-5377743 6.31e-03 4_[+5(3.06e-05)]_43_[+1(8.45e-05)]_\ 17 chrIV:6393454-6393534 4.88e-02 80 chrV:1805109-1805189 2.65e-02 6_[+4(1.17e-05)]_66 chrIII:11942807-11942887 9.64e-02 80 chrI:9725396-9725476 4.65e-05 18_[+3(1.36e-05)]_46_[+4(1.17e-05)] chrI:12179548-12179628 3.05e-02 51_[+1(8.45e-05)]_21 chrIV:12651733-12651813 5.56e-04 44_[+1(3.18e-05)]_10_[+1(3.18e-05)]_\ 10 chrI:3822800-3822880 3.50e-02 64_[+3(6.10e-05)]_8 chrX:2598976-2599056 1.72e-02 19_[+2(1.80e-05)]_2_[+2(6.99e-05)]_\ 43 chrX:13562096-13562176 5.17e-01 80 chrIII:3991532-3991612 2.77e-02 80 chrIII:4723987-4724067 5.67e-03 51_[+1(3.18e-05)]_21 chrIII:5757667-5757747 5.76e-01 80 chrIII:6278692-6278772 1.77e-01 80 chrI:6435838-6435918 3.67e-02 80 chrI:7130948-7131028 2.26e-01 80 chrI:9128944-9129024 1.58e-03 80 chrV:7822749-7822829 3.99e-01 80 chrI:11937399-11937479 5.95e-02 11_[+2(4.40e-05)]_61 chrI:9131991-9132071 1.05e-02 80 chrII:12107973-12108053 9.28e-01 80 chrIV:10481868-10481948 2.22e-01 80 chrII:4506631-4506711 1.57e-03 4_[+2(1.80e-05)]_37_[+5(5.03e-05)]_\ 23 chrX:13396714-13396794 5.70e-01 80 chrM:3714-3794 1.00e+00 80 chrX:6741222-6741302 9.80e-01 80 chrIII:10604503-10604583 2.96e-01 80 chrI:9097793-9097873 2.61e-03 8_[+1(9.82e-05)]_32_[+2(1.80e-05)]_\ 24 chrI:9113214-9113294 1.73e-02 4_[+4(1.17e-05)]_68 chrM:2872-2952 9.27e-02 80 chrIV:17277311-17277391 8.77e-01 80 chrV:1480951-1481031 9.69e-01 80 chrI:7480232-7480312 1.17e-02 57_[+3(1.36e-05)]_15 chrIV:15814131-15814211 1.02e-02 45_[+5(9.38e-05)]_27 chrIV:15696981-15697061 5.30e-03 39_[+1(3.18e-05)]_4_[+5(3.06e-05)]_\ 21 chrIII:5639969-5640049 3.22e-01 80 chrX:1051166-1051246 9.24e-03 46_[+4(1.17e-05)]_26 chrIV:9447330-9447410 3.00e-01 80 chrV:20782335-20782415 3.63e-01 80 chrX:17640941-17641021 4.13e-02 80 chrX:16129039-16129119 2.13e-01 80 chrX:15386141-15386221 9.50e-03 38_[+3(1.36e-05)]_34 chrV:265207-265287 9.69e-01 80 chrIV:3741248-3741328 8.72e-03 3_[+5(5.03e-05)]_69 chrM:12275-12355 9.88e-01 80 chrX:662015-662095 8.48e-03 32_[+1(5.58e-05)]_40 chrM:11230-11310 6.23e-01 80 chrI:4908206-4908286 5.56e-03 32_[+3(1.36e-05)]_40 chrII:10800350-10800430 2.40e-01 80 chrII:14044356-14044436 3.98e-03 80 chrIV:16658821-16658901 3.28e-01 80 chrX:16735094-16735174 6.11e-02 80 chrX:13768626-13768706 1.35e-02 80 chrM:3152-3232 2.65e-01 80 chrIII:86493-86573 8.19e-02 80 chrI:2292931-2293011 1.03e-01 51_[+4(2.69e-05)]_21 chrI:11934315-11934395 9.28e-04 9_[+4(1.17e-05)]_63 chrIV:8040792-8040872 4.83e-03 80 chrV:10867766-10867846 5.13e-01 80 chrX:3023925-3024005 2.23e-01 80 chrI:7954926-7955006 1.83e-03 20_[+1(1.03e-05)]_52 chrI:14939928-14940008 3.67e-03 59_[+5(3.06e-05)]_13 chrV:13909554-13909634 1.19e-01 80 chrX:13975469-13975549 1.58e-01 80 chrIV:7402234-7402314 4.69e-02 80 chrIV:5604540-5604620 3.28e-02 80 chrIII:6364553-6364633 8.02e-02 63_[+1(3.18e-05)]_9 chrII:10547987-10548067 5.52e-05 26_[+2(1.80e-05)]_[+2(1.80e-05)]_\ [+2(1.80e-05)]_30 chrIII:1007676-1007756 3.40e-01 80 chrIV:11347388-11347468 3.57e-01 80 chrII:11757001-11757081 1.28e-01 80 chrI:11840927-11841007 1.56e-01 80 chrM:5997-6077 2.56e-01 80 chrV:7728028-7728108 3.43e-02 67_[+5(9.38e-05)]_5 chrIV:8629737-8629817 2.47e-02 41_[+4(1.17e-05)]_31 chrIV:4471596-4471676 4.76e-02 17_[+5(9.38e-05)]_55 chrV:15566626-15566706 1.35e-02 29_[+3(6.10e-05)]_43 chrII:13066937-13067017 3.02e-01 80 chrI:7662199-7662279 4.72e-01 80 chrII:11836861-11836941 2.42e-01 80 chrX:6739718-6739798 4.09e-02 80 chrI:12551185-12551265 9.80e-03 39_[+4(1.17e-05)]_33 chrIII:6897772-6897852 2.15e-03 48_[+4(1.17e-05)]_24 chrIV:4093284-4093364 1.73e-01 80 chrI:7082242-7082322 2.76e-01 80 chrIV:7902673-7902753 2.36e-03 46_[+3(1.36e-05)]_26 chrII:6839146-6839226 8.98e-03 20_[+1(3.18e-05)]_52 chrII:7323519-7323599 4.11e-01 80 chrI:1069976-1070056 4.73e-01 80 chrX:12877016-12877096 1.70e-01 80 chrIV:10512837-10512917 2.23e-02 64_[+5(3.06e-05)]_8 chrI:9096498-9096578 8.96e-01 80 chrI:10145392-10145472 1.44e-01 80 chrIII:5930869-5930949 4.32e-01 80 chrIV:2993359-2993439 3.68e-01 80 chrV:3716441-3716521 1.47e-04 19_[+1(1.03e-05)]_22_[+3(1.36e-05)]_\ 23 chrV:20711935-20712015 1.02e-04 2_[+3(1.36e-05)]_15_[+2(1.80e-05)]_\ 47 chrV:13086073-13086153 2.69e-03 8_[+4(1.17e-05)]_23_[+2(4.40e-05)]_\ 33 chrIV:4024237-4024317 2.19e-01 80 chrX:4142305-4142385 1.30e-01 68_[+3(8.06e-05)]_4 chrV:10174762-10174842 7.71e-02 61_[+5(9.38e-05)]_11 chrV:12529047-12529127 1.32e-01 29_[+2(4.40e-05)]_43 chrV:4507930-4508010 9.49e-03 37_[+1(3.18e-05)]_35 chrIV:11956456-11956536 1.50e-02 80 chrM:1051-1131 7.55e-01 80 chrIV:11350101-11350181 8.85e-03 41_[+3(1.36e-05)]_31 chrM:2046-2126 5.65e-01 80 chrI:8135011-8135091 8.37e-01 80 chrV:10858560-10858640 6.16e-01 80 chrX:7306597-7306677 5.46e-01 80 chrI:12164820-12164900 4.42e-04 49_[+4(1.17e-05)]_23 chrI:14898761-14898841 2.30e-01 80 chrI:7479373-7479453 3.79e-01 80 chrM:7204-7284 1.84e-01 80 chrV:4143273-4143353 7.22e-02 49_[+5(3.06e-05)]_23 chrX:13358684-13358764 5.10e-01 80 chrIV:11354097-11354177 1.63e-01 80 chrIV:10935486-10935566 8.92e-02 80 chrI:9739570-9739650 9.95e-01 80 chrI:9076292-9076372 1.47e-02 9_[+1(3.18e-05)]_63 chrX:382830-382910 3.13e-03 80 chrV:20776937-20777017 4.39e-01 80 chrX:13356588-13356668 1.84e-01 80 chrX:10377826-10377906 7.70e-04 80 chrII:13681143-13681223 3.66e-02 80 chrV:20005861-20005941 3.35e-02 62_[+5(5.03e-05)]_10 chrI:6835310-6835390 8.23e-02 25_[+2(4.40e-05)]_1_[+2(4.40e-05)]_\ 38 chrIV:9196897-9196977 1.17e-02 80 chrV:15189714-15189794 3.57e-02 80 chrX:2668004-2668084 7.21e-02 80 chrI:1053761-1053841 4.52e-02 34_[+5(9.38e-05)]_38 chrI:6579920-6580000 1.84e-01 80 chrIII:12613395-12613475 9.09e-01 80 chrV:10951789-10951869 5.75e-01 80 chrV:11641465-11641545 6.29e-02 80 chrI:4941215-4941295 8.97e-02 80 chrIV:3725978-3726058 2.93e-01 80 chrI:2605360-2605440 7.02e-03 72_[+1(4.21e-05)] chrIII:8985141-8985221 5.62e-02 80 chrIII:8658496-8658576 5.67e-02 28_[+1(8.45e-05)]_44 chrV:19521816-19521896 1.29e-01 80 chrI:10839157-10839237 3.76e-03 3_[+2(1.80e-05)]_[+2(1.80e-05)]_61 chrIV:13395362-13395442 3.46e-02 15_[+5(3.06e-05)]_57 chrX:13329048-13329128 5.47e-02 80 chrV:9243736-9243816 1.84e-01 80 chrII:11778202-11778282 1.30e-02 49_[+1(4.21e-05)]_10_[+1(4.21e-05)]_\ 5 chrX:3116406-3116486 3.49e-02 80 chrI:3806663-3806743 4.83e-02 37_[+2(1.80e-05)]_35 chrI:2864089-2864169 4.67e-02 52_[+4(1.17e-05)]_20 chrIV:14786969-14787049 2.69e-02 5_[+2(1.80e-05)]_67 chrV:20710300-20710380 2.12e-01 80 chrV:731402-731482 2.00e-01 80 chrX:12200681-12200761 3.34e-02 66_[+2(1.80e-05)]_6 chrIV:4034976-4035056 4.60e-03 6_[+5(5.03e-05)]_16_[+1(3.18e-05)]_\ 42 chrV:619224-619304 4.01e-03 4_[+4(1.17e-05)]_32_[+2(6.99e-05)]_\ 28 chrI:7861561-7861641 2.59e-02 80 chrV:14200176-14200256 1.43e-01 80 chrIV:2048979-2049059 3.45e-02 16_[+2(4.40e-05)]_45_[+2(1.80e-05)]_\ 3 chrIII:10505355-10505435 5.69e-01 80 chrX:12872439-12872519 7.82e-04 8_[+2(1.80e-05)]_64 chrIV:6881298-6881378 2.63e-02 2_[+5(5.03e-05)]_70 chrIII:12556263-12556343 4.21e-02 80 chrI:5379834-5379914 3.69e-01 80 chrII:5061946-5062026 5.59e-01 80 chrV:15880829-15880909 3.93e-01 80 chrII:11348123-11348203 5.41e-01 80 chrIII:12978924-12979004 3.12e-02 80 chrIII:7335379-7335459 5.02e-03 12_[+2(4.40e-05)]_60 chrX:4971567-4971647 2.53e-03 34_[+5(3.06e-05)]_38 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c28n01.farnam.hpc.yale.internal ********************************************************************************