******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/worm/fasta/RankLinear2.0_40/med-1.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrM:197-277 1.0000 80 chrV:1821432-1821512 1.0000 80 chrM:1748-1828 1.0000 80 chrII:6898131-6898211 1.0000 80 chrIII:4542539-4542619 1.0000 80 chrM:5415-5495 1.0000 80 chrV:9583074-9583154 1.0000 80 chrV:14425247-14425327 1.0000 80 chrX:12445644-12445724 1.0000 80 chrX:9296774-9296854 1.0000 80 chrII:8325317-8325397 1.0000 80 chrM:6425-6505 1.0000 80 chrM:10284-10364 1.0000 80 chrII:5399306-5399386 1.0000 80 chrI:14708105-14708185 1.0000 80 chrM:11495-11575 1.0000 80 chrIV:9316205-9316285 1.0000 80 chrI:1175845-1175925 1.0000 80 chrI:12004926-12005006 1.0000 80 chrV:14524344-14524424 1.0000 80 chrIII:13293210-13293290 1.0000 80 chrV:9930769-9930849 1.0000 80 chrM:8260-8340 1.0000 80 chrI:14606047-14606127 1.0000 80 chrV:3587784-3587864 1.0000 80 chrV:18719984-18720064 1.0000 80 chrII:4238049-4238129 1.0000 80 chrIII:1824688-1824768 1.0000 80 chrII:8716471-8716551 1.0000 80 chrM:3528-3608 1.0000 80 chrIV:11310736-11310816 1.0000 80 chrIII:3664397-3664477 1.0000 80 chrIV:15289588-15289668 1.0000 80 chrV:7230990-7231070 1.0000 80 chrX:3969497-3969577 1.0000 80 chrII:3808262-3808342 1.0000 80 chrIV:11605044-11605124 1.0000 80 chrIV:5038896-5038976 1.0000 80 chrI:3547035-3547115 1.0000 80 chrII:6565279-6565359 1.0000 80 chrIV:17120673-17120753 1.0000 80 chrM:2754-2834 1.0000 80 chrI:9176319-9176399 1.0000 80 chrII:6407828-6407908 1.0000 80 chrM:3204-3284 1.0000 80 chrV:13176503-13176583 1.0000 80 chrI:14646707-14646787 1.0000 80 chrIII:11236927-11237007 1.0000 80 chrM:9072-9152 1.0000 80 chrI:1444161-1444241 1.0000 80 chrIV:14013857-14013937 1.0000 80 chrI:4132239-4132319 1.0000 80 chrI:4633673-4633753 1.0000 80 chrIII:3175151-3175231 1.0000 80 chrV:20852166-20852246 1.0000 80 chrV:11239337-11239417 1.0000 80 chrI:3873935-3874015 1.0000 80 chrIV:16863626-16863706 1.0000 80 chrM:7152-7232 1.0000 80 chrX:12426908-12426988 1.0000 80 chrIV:5371048-5371128 1.0000 80 chrM:11253-11333 1.0000 80 chrII:6346425-6346505 1.0000 80 chrI:6136572-6136652 1.0000 80 chrII:10303919-10303999 1.0000 80 chrX:12423633-12423713 1.0000 80 chrV:6709226-6709306 1.0000 80 chrM:1007-1087 1.0000 80 chrX:8156184-8156264 1.0000 80 chrV:18721119-18721199 1.0000 80 chrII:7708740-7708820 1.0000 80 chrIV:16946900-16946980 1.0000 80 chrX:1522804-1522884 1.0000 80 chrIII:3916789-3916869 1.0000 80 chrV:8631547-8631627 1.0000 80 chrV:6785253-6785333 1.0000 80 chrIV:1981109-1981189 1.0000 80 chrII:6835546-6835626 1.0000 80 chrV:4029778-4029858 1.0000 80 chrM:4690-4770 1.0000 80 chrII:6559636-6559716 1.0000 80 chrI:7094966-7095046 1.0000 80 chrIII:8768049-8768129 1.0000 80 chrI:11673366-11673446 1.0000 80 chrM:2325-2405 1.0000 80 chrIII:8971805-8971885 1.0000 80 chrV:13962171-13962251 1.0000 80 chrIV:12417280-12417360 1.0000 80 chrI:11323346-11323426 1.0000 80 chrIII:1600814-1600894 1.0000 80 chrV:14038614-14038694 1.0000 80 chrII:6937350-6937430 1.0000 80 chrII:11676130-11676210 1.0000 80 chrV:19722987-19723067 1.0000 80 chrII:6535790-6535870 1.0000 80 chrV:2697890-2697970 1.0000 80 chrM:12408-12488 1.0000 80 chrV:14855829-14855909 1.0000 80 chrII:6696280-6696360 1.0000 80 chrIV:14576628-14576708 1.0000 80 chrI:12065878-12065958 1.0000 80 chrII:6453733-6453813 1.0000 80 chrIV:12447881-12447961 1.0000 80 chrX:5816663-5816743 1.0000 80 chrIII:11467978-11468058 1.0000 80 chrV:19629443-19629523 1.0000 80 chrII:14248343-14248423 1.0000 80 chrIV:1908791-1908871 1.0000 80 chrX:16271313-16271393 1.0000 80 chrX:8638891-8638971 1.0000 80 chrI:9332931-9333011 1.0000 80 chrV:4731549-4731629 1.0000 80 chrII:7374301-7374381 1.0000 80 chrIII:8650414-8650494 1.0000 80 chrIII:13063081-13063161 1.0000 80 chrIV:13386184-13386264 1.0000 80 chrX:14228854-14228934 1.0000 80 chrM:7388-7468 1.0000 80 chrM:9283-9363 1.0000 80 chrX:16928306-16928386 1.0000 80 chrIII:9463006-9463086 1.0000 80 chrX:1441879-1441959 1.0000 80 chrI:1575682-1575762 1.0000 80 chrX:12692306-12692386 1.0000 80 chrIV:4810513-4810593 1.0000 80 chrI:6756468-6756548 1.0000 80 chrIII:4578492-4578572 1.0000 80 chrI:14721586-14721666 1.0000 80 chrII:5293473-5293553 1.0000 80 chrX:3914483-3914563 1.0000 80 chrIII:3249195-3249275 1.0000 80 chrII:6776544-6776624 1.0000 80 chrV:11113331-11113411 1.0000 80 chrV:2673977-2674057 1.0000 80 chrI:488384-488464 1.0000 80 chrI:4176019-4176099 1.0000 80 chrIV:16865695-16865775 1.0000 80 chrM:9833-9913 1.0000 80 chrV:6098996-6099076 1.0000 80 chrI:11517258-11517338 1.0000 80 chrX:5407338-5407418 1.0000 80 chrIII:13268980-13269060 1.0000 80 chrI:6091096-6091176 1.0000 80 chrI:11579712-11579792 1.0000 80 chrI:6532080-6532160 1.0000 80 chrV:13041794-13041874 1.0000 80 chrII:14249795-14249875 1.0000 80 chrX:8646477-8646557 1.0000 80 chrIII:4171139-4171219 1.0000 80 chrI:13310276-13310356 1.0000 80 chrX:5319379-5319459 1.0000 80 chrIII:8653074-8653154 1.0000 80 chrII:7022706-7022786 1.0000 80 chrV:10579082-10579162 1.0000 80 chrIII:4019949-4020029 1.0000 80 chrIV:16400871-16400951 1.0000 80 chrI:5312807-5312887 1.0000 80 chrV:14689379-14689459 1.0000 80 chrI:14737418-14737498 1.0000 80 chrIII:4568707-4568787 1.0000 80 chrII:6721699-6721779 1.0000 80 chrX:4444244-4444324 1.0000 80 chrIII:10707176-10707256 1.0000 80 chrIV:16776024-16776104 1.0000 80 chrIII:5024542-5024622 1.0000 80 chrIV:3233136-3233216 1.0000 80 chrX:12843671-12843751 1.0000 80 chrX:1858775-1858855 1.0000 80 chrI:11505492-11505572 1.0000 80 chrIV:620454-620534 1.0000 80 chrX:14115669-14115749 1.0000 80 chrV:9544422-9544502 1.0000 80 chrI:1958523-1958603 1.0000 80 chrV:11610618-11610698 1.0000 80 chrV:20694134-20694214 1.0000 80 chrX:14480465-14480545 1.0000 80 chrIII:5555090-5555170 1.0000 80 chrIV:10374049-10374129 1.0000 80 chrII:6355882-6355962 1.0000 80 chrX:16604734-16604814 1.0000 80 chrIII:9629956-9630036 1.0000 80 chrV:14876450-14876530 1.0000 80 chrI:11910979-11911059 1.0000 80 chrIV:9191318-9191398 1.0000 80 chrIII:10624808-10624888 1.0000 80 chrIII:535331-535411 1.0000 80 chrIV:11026163-11026243 1.0000 80 chrX:5708038-5708118 1.0000 80 chrX:8386185-8386265 1.0000 80 chrV:53375-53455 1.0000 80 chrIV:9477718-9477798 1.0000 80 chrII:10388192-10388272 1.0000 80 chrIV:1388264-1388344 1.0000 80 chrX:8971578-8971658 1.0000 80 chrX:12367657-12367737 1.0000 80 chrI:8530041-8530121 1.0000 80 chrX:15492831-15492911 1.0000 80 chrIII:7499660-7499740 1.0000 80 chrV:9318220-9318300 1.0000 80 chrX:14804852-14804932 1.0000 80 chrII:11473773-11473853 1.0000 80 chrI:10807226-10807306 1.0000 80 chrX:9637834-9637914 1.0000 80 chrIII:8106628-8106708 1.0000 80 chrIV:16399234-16399314 1.0000 80 chrV:12780434-12780514 1.0000 80 chrIII:6344877-6344957 1.0000 80 chrX:3348109-3348189 1.0000 80 chrV:773385-773465 1.0000 80 chrIII:1142969-1143049 1.0000 80 chrV:6889031-6889111 1.0000 80 chrX:6593551-6593631 1.0000 80 chrX:3100003-3100083 1.0000 80 chrV:4194972-4195052 1.0000 80 chrX:1880897-1880977 1.0000 80 chrI:9267234-9267314 1.0000 80 chrX:10568506-10568586 1.0000 80 chrI:9665141-9665221 1.0000 80 chrX:13144389-13144469 1.0000 80 chrV:15551763-15551843 1.0000 80 chrII:3521496-3521576 1.0000 80 chrII:14635303-14635383 1.0000 80 chrIV:7039624-7039704 1.0000 80 chrIV:16398326-16398406 1.0000 80 chrI:8024667-8024747 1.0000 80 chrX:10821305-10821385 1.0000 80 chrX:11935081-11935161 1.0000 80 chrII:5181689-5181769 1.0000 80 chrX:4789144-4789224 1.0000 80 chrIV:3524842-3524922 1.0000 80 chrIII:8887406-8887486 1.0000 80 chrV:7060466-7060546 1.0000 80 chrI:6799611-6799691 1.0000 80 chrIII:2768801-2768881 1.0000 80 chrIII:9861626-9861706 1.0000 80 chrI:14113220-14113300 1.0000 80 chrII:5292363-5292443 1.0000 80 chrI:5986323-5986403 1.0000 80 chrII:4942497-4942577 1.0000 80 chrIII:1418845-1418925 1.0000 80 chrII:5661180-5661260 1.0000 80 chrI:8223154-8223234 1.0000 80 chrII:8107278-8107358 1.0000 80 chrII:6853188-6853268 1.0000 80 chrI:2410091-2410171 1.0000 80 chrI:6835374-6835454 1.0000 80 chrX:13512018-13512098 1.0000 80 chrIII:12874862-12874942 1.0000 80 chrV:19126014-19126094 1.0000 80 chrX:5812083-5812163 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/worm/inference_raw/MEME/RankLinear2.0_40_med-1/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/worm/fasta/RankLinear2.0_40/med-1.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.253 C 0.234 G 0.235 T 0.278 Background letter frequencies (from file dataset with add-one prior applied): A 0.253 C 0.234 G 0.235 T 0.278 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF YGCCGCAC MEME-1 width = 8 sites = 62 llr = 505 E-value = 1.4e-025 ******************************************************************************** -------------------------------------------------------------------------------- Motif YGCCGCAC MEME-1 Description -------------------------------------------------------------------------------- Simplified A :1::::8: pos.-specific C 4:97:a19 probability G :913a:2: matrix T 6::::::1 bits 2.1 ** 1.9 ** 1.7 ** 1.5 ** ** * Relative 1.3 ***** * Entropy 1.0 ******** (11.7 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TGCCGCAC consensus C G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGCCGCAC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:5812083-5812163 34 1.16e-05 CTGTTTTCTC TGCCGCAC GGCGGAGCTA chrIII:2768801-2768881 52 1.16e-05 TTTGCAAGAG TGCCGCAC GTGGTTTTTT chrV:9544422-9544502 11 1.16e-05 TATGCAATGC TGCCGCAC ACTTTTCCCA chrIII:13268980-13269060 6 1.16e-05 TCGCG TGCCGCAC ACTTGCGAAA chrIV:17120673-17120753 63 1.16e-05 TTCGCAACAC TGCCGCAC GGTTGTATTT chrIV:11605044-11605124 60 1.16e-05 TTTGCAAGTG TGCCGCAC ACAGTTTGTT chrII:3808262-3808342 34 1.16e-05 ACACGCAAAG TGCCGCAC GGCTTTTTGC chrV:7230990-7231070 68 1.16e-05 TATGCAATGC TGCCGCAC GAATT chrIII:3664397-3664477 44 1.16e-05 TTCGCAACGC TGCCGCAC GTAGTTTATG chrI:14708105-14708185 38 1.16e-05 CATTTGCAAC TGCCGCAC GGCGTTTTGC chrX:9296774-9296854 28 1.16e-05 TTTGCCACTA TGCCGCAC ACAACTGGGT chrI:14721586-14721666 57 2.14e-05 TTCGCAATAT CGCCGCAC GGAGTTGCCG chrII:7374301-7374381 15 2.14e-05 AATAAACATT CGCCGCAC AAAAAAGTGG chrIV:16863626-16863706 57 2.14e-05 AACGCAATAG CGCCGCAC ACTTTTTTGT chrI:3873935-3874015 31 2.14e-05 cgaataggcg cgccgcac attgcAAAAC chrIII:11236927-11237007 62 2.14e-05 CACATTTCCG CGCCGCAC CCGAATCATG chrV:3587784-3587864 53 2.14e-05 TTCGCAACTC CGCCGCAC AGTTTTATCC chrIII:13293210-13293290 30 2.14e-05 cttcgcaatg cgccgcac ggctttttgc chrV:14524344-14524424 72 2.14e-05 TGTGCAAACA CGCCGCAC A chrI:11910979-11911059 54 3.31e-05 TGGGAAACCG TGCGGCAC TTGCGGTAAA chrIV:16865695-16865775 23 3.31e-05 CAAAACCCCG TGCGGCAC AATTGCGTGT chrV:11113331-11113411 31 3.31e-05 AAACgcaatg tgcggcac gcgttttcgc chrIII:3175151-3175231 11 3.31e-05 CTTAACTCTG TGCGGCAC CATTGCGGAA chrII:4238049-4238129 32 3.31e-05 AAATGCCTCG TGCGGCAC ACTTGCGAAA chrI:1175845-1175925 12 3.31e-05 ATAAACTCCG TGCGGCAC ACTTGCAAAA chrII:5399306-5399386 65 3.31e-05 CTGCACACTG TGCGGCAC AATTGCGA chrV:1821432-1821512 24 4.30e-05 ACATGCAAGG CGCGGCAC GCGTTTTCGC chrIII:12874862-12874942 23 6.29e-05 AATGCAATAG CGCCGCGC ACGAAAAAGT chrIV:4810513-4810593 43 6.29e-05 CGTAACCTCG CGCCGCGC TCTTGCGATA chrI:8024667-8024747 61 7.46e-05 CGCCTGGTGC TGGCGCAC TTCTTGTGAG chrI:6091096-6091176 30 7.46e-05 AACGACTTGC TGGCGCAC TTCGCATTTT chrII:11676130-11676210 18 7.46e-05 GTGTGTGTGT TGGCGCAC TCGCGGTTGT chrX:12367657-12367737 70 9.83e-05 CGAGAGACCG TGCCGCAT CGG chrIV:1981109-1981189 62 9.83e-05 CACTTTTCCG TGCCGCAT CGCAAATATT chrV:8631547-8631627 44 9.83e-05 TTTGCAATGA TGCCGCAT GGTTTTATGT chrI:14646707-14646787 43 9.83e-05 TTTTTGCAAC TGCCGCAT GGTTTTGCAG chrI:8223154-8223234 72 1.09e-04 tagggcaatg tgcggcgc g chrIII:4568707-4568787 42 1.09e-04 GAGAAACACG TGCGGCGC TTGCAAATCA chrIII:1824688-1824768 14 1.09e-04 CTAAACCCCG TGCGGCGC TCTTGCAAAA chrV:11239337-11239417 53 1.21e-04 TTTGCAACCC CGCCGCAT GCGGTAGTTA chrII:10388192-10388272 21 1.30e-04 GAAAAAAGTG CGCGGCGC AATTGCAATC chrX:14804852-14804932 17 1.53e-04 GTTCTTGTTC TACCGCAC GGGGGTATAG chrIII:4019949-4020029 21 1.53e-04 ATTCAAAATT TGCCGCCC AACAAAATTT chrX:3914483-3914563 29 1.53e-04 AGGACCGAAG TACCGCAC ACTACCACTC chrI:9176319-9176399 9 1.65e-04 AAACTATG TGGGGCAC AGAGTTGCAG chrM:8260-8340 12 1.65e-04 TTAAGAACAA TGGGGCAC CCTGGAAGTA chrV:6709226-6709306 38 1.85e-04 TTCGCAACGC CACCGCAC GCTTTTCGTT chrI:6136572-6136652 21 1.85e-04 CATGTTGTGT CGCCGCCC GGTTAGCTCA chrV:20852166-20852246 48 1.85e-04 TCTGCAAGGC CACCGCAC AGGGGTGGGA chrV:14425247-14425327 68 1.85e-04 TTTGCAACGC CACCGCAC GCATT chrIII:5555090-5555170 28 2.08e-04 AAACTGTGCG CGGGGCAC TTGCGCAAAA chrIII:4171139-4171219 28 2.20e-04 GTCATCTGCG CGCGGCAT ATCTGCAAAT chrV:10579082-10579162 66 2.54e-04 CGACGTCCAC TGGCGCGC TTTTGGT chrI:12004926-12005006 35 2.54e-04 GATTGCAGAC TGGCGCGC CGCAGCTTGC chrX:4444244-4444324 59 2.96e-04 TTTTCACCCA CGCGGCCC GGGTTCGATT chrX:8646477-8646557 44 2.96e-04 TTTTCACCCA CGCGGCCC GGGTTCGATT chrII:7708740-7708820 38 3.08e-04 TTTGCAATTC TCCCGCAC GGAGTCACAC chrIV:9316205-9316285 41 3.18e-04 CGAAAGCATG CGCCGCGT ATTGCAAACC chrV:53375-53455 49 3.28e-04 gttccctgtt ccccgcac ttccttcaga chrIV:13386184-13386264 52 4.08e-04 GCAACAAGTG TGCGGCGT TGTTGCAAAT chrIII:8768049-8768129 35 4.08e-04 GAGTAAACTG TGCGGCGT GTTTGCGGAA chrI:1444161-1444241 53 5.11e-04 TTCGCAACCC CAGCGCAC ACTTTTCACA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGCCGCAC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:5812083-5812163 1.2e-05 33_[+1]_39 chrIII:2768801-2768881 1.2e-05 51_[+1]_21 chrV:9544422-9544502 1.2e-05 10_[+1]_62 chrIII:13268980-13269060 1.2e-05 5_[+1]_67 chrIV:17120673-17120753 1.2e-05 62_[+1]_10 chrIV:11605044-11605124 1.2e-05 59_[+1]_13 chrII:3808262-3808342 1.2e-05 33_[+1]_39 chrV:7230990-7231070 1.2e-05 67_[+1]_5 chrIII:3664397-3664477 1.2e-05 43_[+1]_29 chrI:14708105-14708185 1.2e-05 37_[+1]_35 chrX:9296774-9296854 1.2e-05 27_[+1]_45 chrI:14721586-14721666 2.1e-05 56_[+1]_16 chrII:7374301-7374381 2.1e-05 14_[+1]_58 chrIV:16863626-16863706 2.1e-05 56_[+1]_16 chrI:3873935-3874015 2.1e-05 30_[+1]_42 chrIII:11236927-11237007 2.1e-05 61_[+1]_11 chrV:3587784-3587864 2.1e-05 52_[+1]_20 chrIII:13293210-13293290 2.1e-05 29_[+1]_43 chrV:14524344-14524424 2.1e-05 71_[+1]_1 chrI:11910979-11911059 3.3e-05 53_[+1]_19 chrIV:16865695-16865775 3.3e-05 22_[+1]_50 chrV:11113331-11113411 3.3e-05 30_[+1]_42 chrIII:3175151-3175231 3.3e-05 10_[+1]_62 chrII:4238049-4238129 3.3e-05 31_[+1]_41 chrI:1175845-1175925 3.3e-05 11_[+1]_61 chrII:5399306-5399386 3.3e-05 64_[+1]_8 chrV:1821432-1821512 4.3e-05 23_[+1]_49 chrIII:12874862-12874942 6.3e-05 22_[+1]_50 chrIV:4810513-4810593 6.3e-05 42_[+1]_30 chrI:8024667-8024747 7.5e-05 60_[+1]_12 chrI:6091096-6091176 7.5e-05 29_[+1]_43 chrII:11676130-11676210 7.5e-05 17_[+1]_55 chrX:12367657-12367737 9.8e-05 69_[+1]_3 chrIV:1981109-1981189 9.8e-05 61_[+1]_11 chrV:8631547-8631627 9.8e-05 43_[+1]_29 chrI:14646707-14646787 9.8e-05 42_[+1]_30 chrI:8223154-8223234 0.00011 71_[+1]_1 chrIII:4568707-4568787 0.00011 41_[+1]_31 chrIII:1824688-1824768 0.00011 13_[+1]_59 chrV:11239337-11239417 0.00012 52_[+1]_20 chrII:10388192-10388272 0.00013 20_[+1]_52 chrX:14804852-14804932 0.00015 16_[+1]_56 chrIII:4019949-4020029 0.00015 20_[+1]_52 chrX:3914483-3914563 0.00015 28_[+1]_44 chrI:9176319-9176399 0.00016 8_[+1]_64 chrM:8260-8340 0.00016 11_[+1]_61 chrV:6709226-6709306 0.00018 37_[+1]_35 chrI:6136572-6136652 0.00018 20_[+1]_52 chrV:20852166-20852246 0.00018 47_[+1]_25 chrV:14425247-14425327 0.00018 67_[+1]_5 chrIII:5555090-5555170 0.00021 27_[+1]_45 chrIII:4171139-4171219 0.00022 27_[+1]_45 chrV:10579082-10579162 0.00025 65_[+1]_7 chrI:12004926-12005006 0.00025 34_[+1]_38 chrX:4444244-4444324 0.0003 58_[+1]_14 chrX:8646477-8646557 0.0003 43_[+1]_29 chrII:7708740-7708820 0.00031 37_[+1]_35 chrIV:9316205-9316285 0.00032 40_[+1]_32 chrV:53375-53455 0.00033 48_[+1]_24 chrIV:13386184-13386264 0.00041 51_[+1]_21 chrIII:8768049-8768129 0.00041 34_[+1]_38 chrI:1444161-1444241 0.00051 52_[+1]_20 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGCCGCAC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF YGCCGCAC width=8 seqs=62 chrX:5812083-5812163 ( 34) TGCCGCAC 1 chrIII:2768801-2768881 ( 52) TGCCGCAC 1 chrV:9544422-9544502 ( 11) TGCCGCAC 1 chrIII:13268980-13269060 ( 6) TGCCGCAC 1 chrIV:17120673-17120753 ( 63) TGCCGCAC 1 chrIV:11605044-11605124 ( 60) TGCCGCAC 1 chrII:3808262-3808342 ( 34) TGCCGCAC 1 chrV:7230990-7231070 ( 68) TGCCGCAC 1 chrIII:3664397-3664477 ( 44) TGCCGCAC 1 chrI:14708105-14708185 ( 38) TGCCGCAC 1 chrX:9296774-9296854 ( 28) TGCCGCAC 1 chrI:14721586-14721666 ( 57) CGCCGCAC 1 chrII:7374301-7374381 ( 15) CGCCGCAC 1 chrIV:16863626-16863706 ( 57) CGCCGCAC 1 chrI:3873935-3874015 ( 31) CGCCGCAC 1 chrIII:11236927-11237007 ( 62) CGCCGCAC 1 chrV:3587784-3587864 ( 53) CGCCGCAC 1 chrIII:13293210-13293290 ( 30) CGCCGCAC 1 chrV:14524344-14524424 ( 72) CGCCGCAC 1 chrI:11910979-11911059 ( 54) TGCGGCAC 1 chrIV:16865695-16865775 ( 23) TGCGGCAC 1 chrV:11113331-11113411 ( 31) TGCGGCAC 1 chrIII:3175151-3175231 ( 11) TGCGGCAC 1 chrII:4238049-4238129 ( 32) TGCGGCAC 1 chrI:1175845-1175925 ( 12) TGCGGCAC 1 chrII:5399306-5399386 ( 65) TGCGGCAC 1 chrV:1821432-1821512 ( 24) CGCGGCAC 1 chrIII:12874862-12874942 ( 23) CGCCGCGC 1 chrIV:4810513-4810593 ( 43) CGCCGCGC 1 chrI:8024667-8024747 ( 61) TGGCGCAC 1 chrI:6091096-6091176 ( 30) TGGCGCAC 1 chrII:11676130-11676210 ( 18) TGGCGCAC 1 chrX:12367657-12367737 ( 70) TGCCGCAT 1 chrIV:1981109-1981189 ( 62) TGCCGCAT 1 chrV:8631547-8631627 ( 44) TGCCGCAT 1 chrI:14646707-14646787 ( 43) TGCCGCAT 1 chrI:8223154-8223234 ( 72) TGCGGCGC 1 chrIII:4568707-4568787 ( 42) TGCGGCGC 1 chrIII:1824688-1824768 ( 14) TGCGGCGC 1 chrV:11239337-11239417 ( 53) CGCCGCAT 1 chrII:10388192-10388272 ( 21) CGCGGCGC 1 chrX:14804852-14804932 ( 17) TACCGCAC 1 chrIII:4019949-4020029 ( 21) TGCCGCCC 1 chrX:3914483-3914563 ( 29) TACCGCAC 1 chrI:9176319-9176399 ( 9) TGGGGCAC 1 chrM:8260-8340 ( 12) TGGGGCAC 1 chrV:6709226-6709306 ( 38) CACCGCAC 1 chrI:6136572-6136652 ( 21) CGCCGCCC 1 chrV:20852166-20852246 ( 48) CACCGCAC 1 chrV:14425247-14425327 ( 68) CACCGCAC 1 chrIII:5555090-5555170 ( 28) CGGGGCAC 1 chrIII:4171139-4171219 ( 28) CGCGGCAT 1 chrV:10579082-10579162 ( 66) TGGCGCGC 1 chrI:12004926-12005006 ( 35) TGGCGCGC 1 chrX:4444244-4444324 ( 59) CGCGGCCC 1 chrX:8646477-8646557 ( 44) CGCGGCCC 1 chrII:7708740-7708820 ( 38) TCCCGCAC 1 chrIV:9316205-9316285 ( 41) CGCCGCGT 1 chrV:53375-53455 ( 49) CCCCGCAC 1 chrIV:13386184-13386264 ( 52) TGCGGCGT 1 chrIII:8768049-8768129 ( 35) TGCGGCGT 1 chrI:1444161-1444241 ( 53) CAGCGCAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGCCGCAC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.3471 E= 1.4e-025 -1260 73 -1260 114 -139 -286 189 -1260 -1260 187 -70 -1260 -1260 154 46 -1260 -1260 -1260 209 -1260 -1260 210 -1260 -1260 158 -186 -41 -1260 -1260 187 -1260 -94 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGCCGCAC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 62 E= 1.4e-025 0.000000 0.387097 0.000000 0.612903 0.096774 0.032258 0.870968 0.000000 0.000000 0.854839 0.145161 0.000000 0.000000 0.677419 0.322581 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.758065 0.064516 0.177419 0.000000 0.000000 0.854839 0.000000 0.145161 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGCCGCAC MEME-1 regular expression -------------------------------------------------------------------------------- [TC]GC[CG]GCAC -------------------------------------------------------------------------------- Time 6.89 secs. ******************************************************************************** ******************************************************************************** MOTIF TTTYGCAA MEME-2 width = 8 sites = 50 llr = 430 E-value = 3.6e-023 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTTYGCAA MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::::2aa pos.-specific C 1:15:8:: probability G ::2:a::: matrix T 9a75:::: bits 2.1 * 1.9 * * * 1.7 * * ** 1.5 ** * ** Relative 1.3 ** **** Entropy 1.0 ** ***** (12.4 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TTTCGCAA consensus GT A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTYGCAA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIV:7039624-7039704 12 1.77e-05 TGGCACGCGA TTTCGCAA CTCTCTCGCA chrV:11113331-11113411 43 1.77e-05 cggcacgcgt tttcgcaa gtctgccgca chrI:14721586-14721666 46 1.77e-05 CGCGCGCGGT TTTCGCAA TATCGCCGCA chrV:6709226-6709306 27 1.77e-05 CGCGCGCGTT TTTCGCAA CGCCACCGCA chrIV:16863626-16863706 8 1.77e-05 TCGCAAA TTTCGCAA CGGGGCGCGG chrI:1444161-1444241 42 1.77e-05 CGCGCGCACT TTTCGCAA CCCCAGCGCA chrIV:17120673-17120753 52 1.77e-05 CGGCGCGAGT TTTCGCAA CACTGCCGCA chrIII:3664397-3664477 33 1.77e-05 GCCGCGCGCA TTTCGCAA CGCTGCCGCA chrV:3587784-3587864 42 1.77e-05 CGGCGCGCGA TTTCGCAA CTCCGCCGCA chrV:1821432-1821512 36 1.77e-05 CGGCACGCGT TTTCGCAA TCTGCGCACA chrIII:2768801-2768881 41 3.87e-05 GGCACGTGGT TTTTGCAA GAGTGCCGCA chrIII:9629956-9630036 33 3.87e-05 CGCACGCAGT TTTTGCAA TTGCGAGGCA chrV:6785253-6785333 49 3.87e-05 GGCACGCAGT TTTTGCAA GGAGCGTGCA chrV:8631547-8631627 33 3.87e-05 CCGCGCGCGT TTTTGCAA TGATGCCGCA chrII:7708740-7708820 27 3.87e-05 CGCGCACGGT TTTTGCAA TTCTCCCGCA chrII:10303919-10303999 27 3.87e-05 TGCGCGCGCT TTTTGCAA GGTCGCTGCA chrV:11239337-11239417 42 3.87e-05 TGCGCGGGTT TTTTGCAA CCCCGCCGCA chrI:14646707-14646787 12 3.87e-05 aaaaatCTGT TTTTGCAA GCCTGGCACA chrI:3547035-3547115 19 3.87e-05 GGCACGGCAT TTTTGCAA GTGGTGCGCA chrIV:11605044-11605124 49 3.87e-05 CTCCTTCCCC TTTTGCAA GTGTGCCGCA chrII:3808262-3808342 46 3.87e-05 CCGCACGGCT TTTTGCAA GACGTGCGCG chrIII:13293210-13293290 42 3.87e-05 ccgcacggct ttttgcaa tgcgccgcac chrV:14524344-14524424 33 3.87e-05 TCCCGCCCCT TTTTGCAA GATTGTGCGT chrII:8325317-8325397 34 3.87e-05 GCGCACGCAG TTTTGCAA GGCCGCTCCA chrV:14425247-14425327 57 3.87e-05 TGCGCGTGGT TTTTGCAA CGCCACCGCA chrV:9583074-9583154 45 3.87e-05 GCGCACGCTA TTTTGCAA GGTTGTCGCA chrI:5986323-5986403 20 5.37e-05 TTGTTACAAA TTGCGCAA GTGCAACCAC chrV:7060466-7060546 48 5.37e-05 TCATTTATTA TTGCGCAA GGCGGTTTGC chrIII:8887406-8887486 10 5.37e-05 GCACTCGAC TTGCGCAA TTCTTGTCAA chrIII:5555090-5555170 36 5.37e-05 CGCGGGGCAC TTGCGCAA AAAGCGCGCG chrI:1958523-1958603 34 5.37e-05 TGCGGCGGTG TTGCGCAA CGGTGTGCGG chrIII:10707176-10707256 62 5.37e-05 CAGTTGATGA TTGCGCAA ACGAGTGGCT chrI:7094966-7095046 10 9.06e-05 ATTTTTTTC TTTCGAAA ATCAGTTATG chrI:4633673-4633753 43 9.06e-05 AAAAAATCAT TTTCGAAA CTTCAAACTC chrI:4132239-4132319 17 9.06e-05 AAAAAAATGA TTTCGAAA ATGACTGGAG chrIII:1142969-1143049 66 1.13e-04 TTTCTCGTCT TTTTGAAA ATACATT chrIII:8653074-8653154 68 1.13e-04 TTTTTCGATT TTTTGAAA CTTAC chrIII:1824688-1824768 71 1.13e-04 GGCTCCCGCG TTTTGAAA CG chrI:14113220-14113300 5 1.28e-04 TGTC TTCCGCAA AACTGTGCGG chrX:12423633-12423713 68 1.28e-04 TTAACAGTTT TTCCGCAA ACGCT chrV:20852166-20852246 37 1.46e-04 CGCGCGCGCT TTCTGCAA GGCCACCGCA chrIII:13268980-13269060 16 1.77e-04 TGCCGCACAC TTGCGAAA ACTGCGCGCC chrIV:5371048-5371128 44 1.77e-04 TGCGGCAACA TTGCGAAA ACGCGTGCCG chrII:4238049-4238129 42 1.77e-04 TGCGGCACAC TTGCGAAA ATGCGTGCGG chrIV:9316205-9316285 28 1.77e-04 TGCGGCGGAA TTGCGAAA GCATGCGCCG chrI:14737418-14737498 60 2.14e-04 TGTGCGAGCC CTTTGCAA AATGTGTGCG chrX:5407338-5407418 14 2.14e-04 GGAGAGTTTT CTTTGCAA ATTTGAAAGA chrIII:3916789-3916869 30 2.14e-04 TGTGCGGCGA CTTTGCAA ACACTGCGCG chrII:6355882-6355962 35 2.50e-04 AACATAACTT TTTTGCCA TTAAATTTCT chrX:9296774-9296854 17 2.50e-04 CCGCATGGTG TTTTGCCA CTATGCCGCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTYGCAA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:7039624-7039704 1.8e-05 11_[+2]_61 chrV:11113331-11113411 1.8e-05 42_[+2]_30 chrI:14721586-14721666 1.8e-05 45_[+2]_27 chrV:6709226-6709306 1.8e-05 26_[+2]_46 chrIV:16863626-16863706 1.8e-05 7_[+2]_65 chrI:1444161-1444241 1.8e-05 41_[+2]_31 chrIV:17120673-17120753 1.8e-05 51_[+2]_21 chrIII:3664397-3664477 1.8e-05 32_[+2]_40 chrV:3587784-3587864 1.8e-05 41_[+2]_31 chrV:1821432-1821512 1.8e-05 35_[+2]_37 chrIII:2768801-2768881 3.9e-05 40_[+2]_32 chrIII:9629956-9630036 3.9e-05 32_[+2]_40 chrV:6785253-6785333 3.9e-05 48_[+2]_24 chrV:8631547-8631627 3.9e-05 32_[+2]_40 chrII:7708740-7708820 3.9e-05 26_[+2]_46 chrII:10303919-10303999 3.9e-05 26_[+2]_46 chrV:11239337-11239417 3.9e-05 41_[+2]_31 chrI:14646707-14646787 3.9e-05 11_[+2]_61 chrI:3547035-3547115 3.9e-05 18_[+2]_54 chrIV:11605044-11605124 3.9e-05 48_[+2]_24 chrII:3808262-3808342 3.9e-05 45_[+2]_27 chrIII:13293210-13293290 3.9e-05 41_[+2]_31 chrV:14524344-14524424 3.9e-05 32_[+2]_40 chrII:8325317-8325397 3.9e-05 33_[+2]_39 chrV:14425247-14425327 3.9e-05 56_[+2]_16 chrV:9583074-9583154 3.9e-05 44_[+2]_28 chrI:5986323-5986403 5.4e-05 19_[+2]_53 chrV:7060466-7060546 5.4e-05 47_[+2]_25 chrIII:8887406-8887486 5.4e-05 9_[+2]_63 chrIII:5555090-5555170 5.4e-05 35_[+2]_37 chrI:1958523-1958603 5.4e-05 33_[+2]_39 chrIII:10707176-10707256 5.4e-05 61_[+2]_11 chrI:7094966-7095046 9.1e-05 9_[+2]_63 chrI:4633673-4633753 9.1e-05 42_[+2]_30 chrI:4132239-4132319 9.1e-05 16_[+2]_56 chrIII:1142969-1143049 0.00011 65_[+2]_7 chrIII:8653074-8653154 0.00011 67_[+2]_5 chrIII:1824688-1824768 0.00011 70_[+2]_2 chrI:14113220-14113300 0.00013 4_[+2]_68 chrX:12423633-12423713 0.00013 67_[+2]_5 chrV:20852166-20852246 0.00015 36_[+2]_36 chrIII:13268980-13269060 0.00018 15_[+2]_57 chrIV:5371048-5371128 0.00018 43_[+2]_29 chrII:4238049-4238129 0.00018 41_[+2]_31 chrIV:9316205-9316285 0.00018 27_[+2]_45 chrI:14737418-14737498 0.00021 59_[+2]_13 chrX:5407338-5407418 0.00021 13_[+2]_59 chrIII:3916789-3916869 0.00021 29_[+2]_43 chrII:6355882-6355962 0.00025 34_[+2]_38 chrX:9296774-9296854 0.00025 16_[+2]_56 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTYGCAA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTTYGCAA width=8 seqs=50 chrIV:7039624-7039704 ( 12) TTTCGCAA 1 chrV:11113331-11113411 ( 43) TTTCGCAA 1 chrI:14721586-14721666 ( 46) TTTCGCAA 1 chrV:6709226-6709306 ( 27) TTTCGCAA 1 chrIV:16863626-16863706 ( 8) TTTCGCAA 1 chrI:1444161-1444241 ( 42) TTTCGCAA 1 chrIV:17120673-17120753 ( 52) TTTCGCAA 1 chrIII:3664397-3664477 ( 33) TTTCGCAA 1 chrV:3587784-3587864 ( 42) TTTCGCAA 1 chrV:1821432-1821512 ( 36) TTTCGCAA 1 chrIII:2768801-2768881 ( 41) TTTTGCAA 1 chrIII:9629956-9630036 ( 33) TTTTGCAA 1 chrV:6785253-6785333 ( 49) TTTTGCAA 1 chrV:8631547-8631627 ( 33) TTTTGCAA 1 chrII:7708740-7708820 ( 27) TTTTGCAA 1 chrII:10303919-10303999 ( 27) TTTTGCAA 1 chrV:11239337-11239417 ( 42) TTTTGCAA 1 chrI:14646707-14646787 ( 12) TTTTGCAA 1 chrI:3547035-3547115 ( 19) TTTTGCAA 1 chrIV:11605044-11605124 ( 49) TTTTGCAA 1 chrII:3808262-3808342 ( 46) TTTTGCAA 1 chrIII:13293210-13293290 ( 42) TTTTGCAA 1 chrV:14524344-14524424 ( 33) TTTTGCAA 1 chrII:8325317-8325397 ( 34) TTTTGCAA 1 chrV:14425247-14425327 ( 57) TTTTGCAA 1 chrV:9583074-9583154 ( 45) TTTTGCAA 1 chrI:5986323-5986403 ( 20) TTGCGCAA 1 chrV:7060466-7060546 ( 48) TTGCGCAA 1 chrIII:8887406-8887486 ( 10) TTGCGCAA 1 chrIII:5555090-5555170 ( 36) TTGCGCAA 1 chrI:1958523-1958603 ( 34) TTGCGCAA 1 chrIII:10707176-10707256 ( 62) TTGCGCAA 1 chrI:7094966-7095046 ( 10) TTTCGAAA 1 chrI:4633673-4633753 ( 43) TTTCGAAA 1 chrI:4132239-4132319 ( 17) TTTCGAAA 1 chrIII:1142969-1143049 ( 66) TTTTGAAA 1 chrIII:8653074-8653154 ( 68) TTTTGAAA 1 chrIII:1824688-1824768 ( 71) TTTTGAAA 1 chrI:14113220-14113300 ( 5) TTCCGCAA 1 chrX:12423633-12423713 ( 68) TTCCGCAA 1 chrV:20852166-20852246 ( 37) TTCTGCAA 1 chrIII:13268980-13269060 ( 16) TTGCGAAA 1 chrIV:5371048-5371128 ( 44) TTGCGAAA 1 chrII:4238049-4238129 ( 42) TTGCGAAA 1 chrIV:9316205-9316285 ( 28) TTGCGAAA 1 chrI:14737418-14737498 ( 60) CTTTGCAA 1 chrX:5407338-5407418 ( 14) CTTTGCAA 1 chrIII:3916789-3916869 ( 30) CTTTGCAA 1 chrII:6355882-6355962 ( 35) TTTTGCCA 1 chrX:9296774-9296854 ( 17) TTTTGCCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTYGCAA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.64284 E= 3.6e-023 -1229 -196 -1229 176 -1229 -1229 -1229 185 -1229 -196 -23 141 -1229 110 -1229 85 -1229 -1229 209 -1229 -34 178 -1229 -1229 192 -254 -1229 -1229 198 -1229 -1229 -1229 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTYGCAA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 50 E= 3.6e-023 0.000000 0.060000 0.000000 0.940000 0.000000 0.000000 0.000000 1.000000 0.000000 0.060000 0.200000 0.740000 0.000000 0.500000 0.000000 0.500000 0.000000 0.000000 1.000000 0.000000 0.200000 0.800000 0.000000 0.000000 0.960000 0.040000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTYGCAA MEME-2 regular expression -------------------------------------------------------------------------------- TT[TG][CT]G[CA]AA -------------------------------------------------------------------------------- Time 10.54 secs. ******************************************************************************** ******************************************************************************** MOTIF SYGCGCVC MEME-3 width = 8 sites = 51 llr = 409 E-value = 4.1e-011 ******************************************************************************** -------------------------------------------------------------------------------- Motif SYGCGCVC MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::::::2: pos.-specific C 472a:a38 probability G 6:8:a:42 matrix T :3:::::: bits 2.1 *** 1.9 *** 1.7 *** 1.5 *** Relative 1.3 **** * Entropy 1.0 ****** * (11.6 bits) 0.8 ****** * 0.6 ****** * 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GCGCGCGC consensus CTC C sequence A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SYGCGCVC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIII:5555090-5555170 47 9.14e-06 TGCGCAAAAA GCGCGCGC ACATTGCGTT chrI:14721586-14721666 33 9.14e-06 CCTTTGCAAT GCGCGCGC GCGGTTTTCG chrV:4731549-4731629 53 9.14e-06 GCAAAAACGC GCGCGCGC ATTGCATGTA chrIII:3916789-3916869 43 9.14e-06 TGCAAACACT GCGCGCGC AGCTTGCAAG chrII:7708740-7708820 14 9.14e-06 ACAATGCAAT GCGCGCGC ACGGTTTTTG chrV:6709226-6709306 16 9.14e-06 TCTGCAACGC GCGCGCGC GTTTTTCGCA chrII:10303919-10303999 18 9.14e-06 TGCAAGTTGT GCGCGCGC TTTTTGCAAG chrV:20852166-20852246 28 9.14e-06 CGCAAGACGC GCGCGCGC TTTCTGCAAG chrI:1444161-1444241 31 9.14e-06 TTTGCAACCA GCGCGCGC ACTTTTCGCA chrI:14708105-14708185 63 9.14e-06 TGCCATCCCC GCGCGCGC AGTGGGGATT chrIII:13268980-13269060 27 2.74e-05 TGCGAAAACT GCGCGCCC GCATTGCATA chrI:11323346-11323426 35 2.74e-05 TGCAAATATC GCGCGCCC GCATTGCAAT chrV:8631547-8631627 23 2.74e-05 TTTGCAACCA CCGCGCGC GTTTTTGCAA chrIII:3664397-3664477 24 2.74e-05 TTGCAACACG CCGCGCGC ATTTCGCAAC chrII:8325317-8325397 22 4.63e-05 AATTTGCAAT GCGCGCAC GCAGTTTTGC chrIII:4019949-4020029 40 5.61e-05 ACAAAATTTC CCGCGCAC Acaaatgtgc chrV:7230990-7231070 46 5.61e-05 GTCGCAACCC CCGCGCAC TTTTTATGCA chrV:9930769-9930849 20 5.61e-05 GAAACATGAC CCGCGCAC CAATGTTGCG chrV:9583074-9583154 33 5.61e-05 ACTTTGCAAG CCGCGCAC GCTATTTTGC chrV:11610618-11610698 17 6.69e-05 AATATACAAT GTGCGCGC TCATCTTGCA chrII:3808262-3808342 57 6.69e-05 TTTGCAAGAC GTGCGCGC GGAGTTTCTA chrV:13962171-13962251 33 9.77e-05 ATTGCATAAA CTGCGCGC GGCAACTGCA chrI:12004926-12005006 12 9.77e-05 acaatgaaaa CTGCGCGC GTGGAGATTG chrI:1175845-1175925 33 9.77e-05 TGCAAAAACC GTGCGCCC ACCTTGCAAT chrI:12065878-12065958 45 1.27e-04 GGTGGTTCGA GCCCGCCC GAGATCAGTC chrIII:1418845-1418925 6 1.56e-04 CCAAG CCCCGCCC ATCTACCGTA chrI:14737418-14737498 73 1.56e-04 TGCAAAATGT GTGCGCAC chrIV:16865695-16865775 53 1.56e-04 ATTTACGAAG CCCCGCCC AAGAATTTTT chrIV:4810513-4810593 66 1.56e-04 CGATAGCAAA CCCCGCCC ACTTTTC chrII:7374301-7374381 54 1.56e-04 AACGCAATGT GTGCGCAC GTTATCTCAC chrIV:1981109-1981189 45 1.56e-04 GCGTGCGGCT CCCCGCCC ACTTTTCCGT chrIV:16946900-16946980 22 1.56e-04 AATAAATCCC GTGCGCAC CACTTGCAAA chrIII:11236927-11237007 45 1.56e-04 CCTGCCTCCG CCCCGCCC ACATTTCCGC chrI:3547035-3547115 30 1.56e-04 TTTGCAAGTG GTGCGCAC ATTTTCAAGG chrIV:9316205-9316285 70 1.56e-04 TTGTCATCAT CCCCGCCC ACT chrIII:4542539-4542619 51 1.56e-04 GCCGTTTTAG CCCCGCCC CTTGAAATAT chrV:2697890-2697970 6 1.75e-04 AAATC GCGCGCCG CAGAATTGCG chrIII:1824688-1824768 34 1.75e-04 TTGCAAAATC GCGCGCCG CAGGCTGCAA chrIV:11026163-11026243 22 1.96e-04 AGAATGAAAG GCCCGCAC ACAACCGAGT chrI:14606047-14606127 50 1.96e-04 GCCCATTTTT CTGCGCAC CCATAGTTCT chrV:1821432-1821512 45 1.96e-04 TTTTCGCAAT CTGCGCAC ACACTTTGGT chrII:10388192-10388272 69 2.05e-04 ACCCATTTTT CCGCGCCG CCAA chrV:11239337-11239417 31 2.78e-04 CACGCAACCA GTGCGCGG GTTTTTTGCA chrIV:11310736-11310816 57 2.78e-04 AAGAGGAAAA GTGCGCGG CGGGCTTGCA chrII:8716471-8716551 70 2.78e-04 CAATAATAAA GTGCGCGG GTA chrIII:4171139-4171219 72 2.89e-04 GCAAAGAACG CTCCGCCC A chrI:4132239-4132319 54 3.20e-04 AACAGAATTT CTGCGCGG CGGTGTTGCC chrV:13176503-13176583 26 3.20e-04 GTGATGAAAA CTGCGCGG TGGTTGCAAG chrIII:13293210-13293290 5 3.60e-04 gcaa gcccgccg cacagtcctt chrV:19722987-19723067 29 3.93e-04 GCCCTTCCCT CCCCGCCG ACCATCGGCT chrV:3587784-3587864 34 4.77e-04 GCAATCCGCG GCGCGCGA TTTCGCAACT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SYGCGCVC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:5555090-5555170 9.1e-06 46_[+3]_26 chrI:14721586-14721666 9.1e-06 32_[+3]_40 chrV:4731549-4731629 9.1e-06 52_[+3]_20 chrIII:3916789-3916869 9.1e-06 42_[+3]_30 chrII:7708740-7708820 9.1e-06 13_[+3]_59 chrV:6709226-6709306 9.1e-06 15_[+3]_57 chrII:10303919-10303999 9.1e-06 17_[+3]_55 chrV:20852166-20852246 9.1e-06 27_[+3]_45 chrI:1444161-1444241 9.1e-06 30_[+3]_42 chrI:14708105-14708185 9.1e-06 62_[+3]_10 chrIII:13268980-13269060 2.7e-05 26_[+3]_46 chrI:11323346-11323426 2.7e-05 34_[+3]_38 chrV:8631547-8631627 2.7e-05 22_[+3]_50 chrIII:3664397-3664477 2.7e-05 23_[+3]_49 chrII:8325317-8325397 4.6e-05 21_[+3]_51 chrIII:4019949-4020029 5.6e-05 39_[+3]_33 chrV:7230990-7231070 5.6e-05 45_[+3]_27 chrV:9930769-9930849 5.6e-05 19_[+3]_53 chrV:9583074-9583154 5.6e-05 32_[+3]_40 chrV:11610618-11610698 6.7e-05 16_[+3]_56 chrII:3808262-3808342 6.7e-05 56_[+3]_16 chrV:13962171-13962251 9.8e-05 32_[+3]_40 chrI:12004926-12005006 9.8e-05 11_[+3]_61 chrI:1175845-1175925 9.8e-05 32_[+3]_40 chrI:12065878-12065958 0.00013 44_[+3]_28 chrIII:1418845-1418925 0.00016 5_[+3]_67 chrI:14737418-14737498 0.00016 72_[+3] chrIV:16865695-16865775 0.00016 52_[+3]_20 chrIV:4810513-4810593 0.00016 65_[+3]_7 chrII:7374301-7374381 0.00016 53_[+3]_19 chrIV:1981109-1981189 0.00016 44_[+3]_28 chrIV:16946900-16946980 0.00016 21_[+3]_51 chrIII:11236927-11237007 0.00016 44_[+3]_28 chrI:3547035-3547115 0.00016 29_[+3]_43 chrIV:9316205-9316285 0.00016 69_[+3]_3 chrIII:4542539-4542619 0.00016 50_[+3]_22 chrV:2697890-2697970 0.00017 5_[+3]_67 chrIII:1824688-1824768 0.00017 33_[+3]_39 chrIV:11026163-11026243 0.0002 21_[+3]_51 chrI:14606047-14606127 0.0002 49_[+3]_23 chrV:1821432-1821512 0.0002 44_[+3]_28 chrII:10388192-10388272 0.00021 68_[+3]_4 chrV:11239337-11239417 0.00028 30_[+3]_42 chrIV:11310736-11310816 0.00028 56_[+3]_16 chrII:8716471-8716551 0.00028 69_[+3]_3 chrIII:4171139-4171219 0.00029 71_[+3]_1 chrI:4132239-4132319 0.00032 53_[+3]_19 chrV:13176503-13176583 0.00032 25_[+3]_47 chrIII:13293210-13293290 0.00036 4_[+3]_68 chrV:19722987-19723067 0.00039 28_[+3]_44 chrV:3587784-3587864 0.00048 33_[+3]_39 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SYGCGCVC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF SYGCGCVC width=8 seqs=51 chrIII:5555090-5555170 ( 47) GCGCGCGC 1 chrI:14721586-14721666 ( 33) GCGCGCGC 1 chrV:4731549-4731629 ( 53) GCGCGCGC 1 chrIII:3916789-3916869 ( 43) GCGCGCGC 1 chrII:7708740-7708820 ( 14) GCGCGCGC 1 chrV:6709226-6709306 ( 16) GCGCGCGC 1 chrII:10303919-10303999 ( 18) GCGCGCGC 1 chrV:20852166-20852246 ( 28) GCGCGCGC 1 chrI:1444161-1444241 ( 31) GCGCGCGC 1 chrI:14708105-14708185 ( 63) GCGCGCGC 1 chrIII:13268980-13269060 ( 27) GCGCGCCC 1 chrI:11323346-11323426 ( 35) GCGCGCCC 1 chrV:8631547-8631627 ( 23) CCGCGCGC 1 chrIII:3664397-3664477 ( 24) CCGCGCGC 1 chrII:8325317-8325397 ( 22) GCGCGCAC 1 chrIII:4019949-4020029 ( 40) CCGCGCAC 1 chrV:7230990-7231070 ( 46) CCGCGCAC 1 chrV:9930769-9930849 ( 20) CCGCGCAC 1 chrV:9583074-9583154 ( 33) CCGCGCAC 1 chrV:11610618-11610698 ( 17) GTGCGCGC 1 chrII:3808262-3808342 ( 57) GTGCGCGC 1 chrV:13962171-13962251 ( 33) CTGCGCGC 1 chrI:12004926-12005006 ( 12) CTGCGCGC 1 chrI:1175845-1175925 ( 33) GTGCGCCC 1 chrI:12065878-12065958 ( 45) GCCCGCCC 1 chrIII:1418845-1418925 ( 6) CCCCGCCC 1 chrI:14737418-14737498 ( 73) GTGCGCAC 1 chrIV:16865695-16865775 ( 53) CCCCGCCC 1 chrIV:4810513-4810593 ( 66) CCCCGCCC 1 chrII:7374301-7374381 ( 54) GTGCGCAC 1 chrIV:1981109-1981189 ( 45) CCCCGCCC 1 chrIV:16946900-16946980 ( 22) GTGCGCAC 1 chrIII:11236927-11237007 ( 45) CCCCGCCC 1 chrI:3547035-3547115 ( 30) GTGCGCAC 1 chrIV:9316205-9316285 ( 70) CCCCGCCC 1 chrIII:4542539-4542619 ( 51) CCCCGCCC 1 chrV:2697890-2697970 ( 6) GCGCGCCG 1 chrIII:1824688-1824768 ( 34) GCGCGCCG 1 chrIV:11026163-11026243 ( 22) GCCCGCAC 1 chrI:14606047-14606127 ( 50) CTGCGCAC 1 chrV:1821432-1821512 ( 45) CTGCGCAC 1 chrII:10388192-10388272 ( 69) CCGCGCCG 1 chrV:11239337-11239417 ( 31) GTGCGCGG 1 chrIV:11310736-11310816 ( 57) GTGCGCGG 1 chrII:8716471-8716551 ( 70) GTGCGCGG 1 chrIII:4171139-4171219 ( 72) CTCCGCCC 1 chrI:4132239-4132319 ( 54) CTGCGCGG 1 chrV:13176503-13176583 ( 26) CTGCGCGG 1 chrIII:13293210-13293290 ( 5) GCCCGCCG 1 chrV:19722987-19723067 ( 29) CCCCGCCG 1 chrV:3587784-3587864 ( 34) GCGCGCGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SYGCGCVC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.1012 E= 4.1e-011 -1232 88 127 -1232 -1232 151 -1232 26 -1232 1 170 -1232 -1232 210 -1232 -1232 -1232 -1232 209 -1232 -1232 210 -1232 -1232 -10 51 87 -1232 -369 175 -26 -1232 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SYGCGCVC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 51 E= 4.1e-011 0.000000 0.431373 0.568627 0.000000 0.000000 0.666667 0.000000 0.333333 0.000000 0.235294 0.764706 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.235294 0.333333 0.431373 0.000000 0.019608 0.784314 0.196078 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SYGCGCVC MEME-3 regular expression -------------------------------------------------------------------------------- [GC][CT][GC]CGC[GCA]C -------------------------------------------------------------------------------- Time 14.11 secs. ******************************************************************************** ******************************************************************************** MOTIF GGGCGGMG MEME-4 width = 8 sites = 30 llr = 274 E-value = 3.0e-009 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGGCGGMG MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::1::4: pos.-specific C :2:91:4: probability G a7a:9a2a matrix T :2:::::: bits 2.1 * * * * 1.9 * * * * 1.7 * **** * 1.5 * **** * Relative 1.3 * **** * Entropy 1.0 * **** * (13.2 bits) 0.8 ****** * 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GGGCGGAG consensus C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGCGGMG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrI:6835374-6835454 65 1.92e-05 GACGAAAAGT GGGCGGAG ACTGATGT chrI:14113220-14113300 59 1.92e-05 TTGCAAAAAG GGGCGGAG TCATTGGTTT chrI:11579712-11579792 63 1.92e-05 TGAGCTAACC GGGCGGCG ATCACAGTTA chrII:7374301-7374381 31 1.92e-05 ACAAAAAAGT GGGCGGAG ACTGAAACGC chrV:13962171-13962251 56 1.92e-05 CTGCAAAAAA GGGCGGAG CCCGCGTAAA chrIII:3916789-3916869 62 1.92e-05 GCTTGCAAGT GGGCGGAG TTACTGAATA chrIV:16946900-16946980 65 1.92e-05 TTGCAAAACT GGGCGGAG CCACGCGG chrIV:16863626-16863706 32 1.92e-05 GCGGTTCTAT GGGCGGAG TTTAGCGAAC chrI:3873935-3874015 56 1.92e-05 AACTGCAAAT GGGCGGAG TTTCTGCGTA chrV:13176503-13176583 67 1.92e-05 GGTTGCAAAG GGGCGGAG CTATGT chrIV:11605044-11605124 30 1.92e-05 TGGTTCTGGT GGGCGGAG TCTCCTTCCC chrV:7230990-7231070 16 1.92e-05 ACAAACCAGT GGGCGGAG CGTGAAGCAG chrV:3587784-3587864 8 1.92e-05 GAAAAAA GGGCGGAG TCGCGAGCGC chrI:1958523-1958603 67 2.85e-05 TTGCAGTTGG GGGCGGGG CCTGGA chrIII:3175151-3175231 52 2.85e-05 GCTTGCAAAT GGGCGGGG CCTAGCTTCA chrII:3808262-3808342 4 2.85e-05 GTT GGGCGGGG CTTCGTAAAT chrIII:4568707-4568787 17 4.76e-05 TGAAAATGTC GCGCGGCG GAATTGCGAG chrIV:1981109-1981189 22 4.76e-05 AAATGAAACT GCGCGGCG GGCTTGCGTG chrV:9930769-9930849 46 4.76e-05 CGGTGTCTGT GCGCGGCG GTTGCAGTGT chrIII:4542539-4542619 10 4.76e-05 AGAAAAAAT GCGCGGCG TGCTTGCAAT chrI:11323346-11323426 14 7.03e-05 TGTCAAGTGT GTGCGGCG GTTTGCAAAT chrIII:11236927-11237007 21 7.03e-05 GGAAAAAAGT GTGCGGCG GCATTGCCTG chrII:4238049-4238129 54 7.03e-05 GCGAAAATGC GTGCGGCG CGTTGCAACT chrIV:9316205-9316285 17 7.03e-05 GAATAAAACC GTGCGGCG GAATTGCGAA chrV:11610618-11610698 43 7.95e-05 CAAAAAATGT GCGCGGGG GTTGCAGCAG chrV:4731549-4731629 30 9.05e-05 TAGCCATTCT GTGCGGGG ACATTGCAAA chrX:10821305-10821385 45 1.30e-04 AATCGAACCC GGGCCGCG TGGGTGAAAA chrX:12367657-12367737 8 1.30e-04 CGAACCC GGGCCGCG TGGGTGAAAA chrV:11113331-11113411 10 1.30e-04 AAACGAATG GGGAGGAG CCCAAACgca chrM:7388-7468 12 1.30e-04 TCATACATCT GGGAGGCG TATAATTTAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGCGGMG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:6835374-6835454 1.9e-05 64_[+4]_8 chrI:14113220-14113300 1.9e-05 58_[+4]_14 chrI:11579712-11579792 1.9e-05 62_[+4]_10 chrII:7374301-7374381 1.9e-05 30_[+4]_42 chrV:13962171-13962251 1.9e-05 55_[+4]_17 chrIII:3916789-3916869 1.9e-05 61_[+4]_11 chrIV:16946900-16946980 1.9e-05 64_[+4]_8 chrIV:16863626-16863706 1.9e-05 31_[+4]_41 chrI:3873935-3874015 1.9e-05 55_[+4]_17 chrV:13176503-13176583 1.9e-05 66_[+4]_6 chrIV:11605044-11605124 1.9e-05 29_[+4]_43 chrV:7230990-7231070 1.9e-05 15_[+4]_57 chrV:3587784-3587864 1.9e-05 7_[+4]_65 chrI:1958523-1958603 2.8e-05 66_[+4]_6 chrIII:3175151-3175231 2.8e-05 51_[+4]_21 chrII:3808262-3808342 2.8e-05 3_[+4]_69 chrIII:4568707-4568787 4.8e-05 16_[+4]_56 chrIV:1981109-1981189 4.8e-05 21_[+4]_51 chrV:9930769-9930849 4.8e-05 45_[+4]_27 chrIII:4542539-4542619 4.8e-05 9_[+4]_63 chrI:11323346-11323426 7e-05 13_[+4]_59 chrIII:11236927-11237007 7e-05 20_[+4]_52 chrII:4238049-4238129 7e-05 53_[+4]_19 chrIV:9316205-9316285 7e-05 16_[+4]_56 chrV:11610618-11610698 7.9e-05 42_[+4]_30 chrV:4731549-4731629 9e-05 29_[+4]_43 chrX:10821305-10821385 0.00013 44_[+4]_28 chrX:12367657-12367737 0.00013 7_[+4]_65 chrV:11113331-11113411 0.00013 9_[+4]_63 chrM:7388-7468 0.00013 11_[+4]_61 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGCGGMG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGGCGGMG width=8 seqs=30 chrI:6835374-6835454 ( 65) GGGCGGAG 1 chrI:14113220-14113300 ( 59) GGGCGGAG 1 chrI:11579712-11579792 ( 63) GGGCGGCG 1 chrII:7374301-7374381 ( 31) GGGCGGAG 1 chrV:13962171-13962251 ( 56) GGGCGGAG 1 chrIII:3916789-3916869 ( 62) GGGCGGAG 1 chrIV:16946900-16946980 ( 65) GGGCGGAG 1 chrIV:16863626-16863706 ( 32) GGGCGGAG 1 chrI:3873935-3874015 ( 56) GGGCGGAG 1 chrV:13176503-13176583 ( 67) GGGCGGAG 1 chrIV:11605044-11605124 ( 30) GGGCGGAG 1 chrV:7230990-7231070 ( 16) GGGCGGAG 1 chrV:3587784-3587864 ( 8) GGGCGGAG 1 chrI:1958523-1958603 ( 67) GGGCGGGG 1 chrIII:3175151-3175231 ( 52) GGGCGGGG 1 chrII:3808262-3808342 ( 4) GGGCGGGG 1 chrIII:4568707-4568787 ( 17) GCGCGGCG 1 chrIV:1981109-1981189 ( 22) GCGCGGCG 1 chrV:9930769-9930849 ( 46) GCGCGGCG 1 chrIII:4542539-4542619 ( 10) GCGCGGCG 1 chrI:11323346-11323426 ( 14) GTGCGGCG 1 chrIII:11236927-11237007 ( 21) GTGCGGCG 1 chrII:4238049-4238129 ( 54) GTGCGGCG 1 chrIV:9316205-9316285 ( 17) GTGCGGCG 1 chrV:11610618-11610698 ( 43) GCGCGGGG 1 chrV:4731549-4731629 ( 30) GTGCGGGG 1 chrX:10821305-10821385 ( 45) GGGCCGCG 1 chrX:12367657-12367737 ( 8) GGGCCGCG 1 chrV:11113331-11113411 ( 10) GGGAGGAG 1 chrM:7388-7468 ( 12) GGGAGGCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGCGGMG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.5224 E= 3.0e-009 -1155 -1155 209 -1155 -1155 -49 150 -74 -1155 -1155 209 -1155 -192 200 -1155 -1155 -1155 -181 199 -1155 -1155 -1155 209 -1155 78 78 -50 -1155 -1155 -1155 209 -1155 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGCGGMG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 30 E= 3.0e-009 0.000000 0.000000 1.000000 0.000000 0.000000 0.166667 0.666667 0.166667 0.000000 0.000000 1.000000 0.000000 0.066667 0.933333 0.000000 0.000000 0.000000 0.066667 0.933333 0.000000 0.000000 0.000000 1.000000 0.000000 0.433333 0.400000 0.166667 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGCGGMG MEME-4 regular expression -------------------------------------------------------------------------------- GGGCGG[AC]G -------------------------------------------------------------------------------- Time 17.59 secs. ******************************************************************************** ******************************************************************************** MOTIF AGCTCAGT MEME-5 width = 8 sites = 16 llr = 158 E-value = 5.5e-002 ******************************************************************************** -------------------------------------------------------------------------------- Motif AGCTCAGT MEME-5 Description -------------------------------------------------------------------------------- Simplified A 9::::a:: pos.-specific C ::9:a:1: probability G 1a11::9: matrix T :::9:::a bits 2.1 * * 1.9 * ** * 1.7 ** ** * 1.5 ******** Relative 1.3 ******** Entropy 1.0 ******** (14.3 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AGCTCAGT consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGCTCAGT MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrV:19126014-19126094 38 1.50e-05 CTGCCTCGAT AGCTCAGT TGGGAGAGCG chrIV:16398326-16398406 66 1.50e-05 GCGGGGGTAT AGCTCAGT GGTAGAG chrX:6593551-6593631 53 1.50e-05 CTGCCTCGAT AGCTCAGT TGGGAGAGCG chrX:14804852-14804932 33 1.50e-05 ACGGGGGTAT AGCTCAGT GGCAGAGCAT chrIII:535331-535411 59 1.50e-05 TGCCGTCGAT AGCTCAGT TGGTAGAGCG chrI:11505492-11505572 67 1.50e-05 TCGGGGGTAT AGCTCAGT GGCAGA chrIII:10707176-10707256 26 1.50e-05 AAAAATCGGG AGCTCAGT GCACCGGAAG chrX:8638891-8638971 39 1.50e-05 GTGGGGGTAT AGCTCAGT GGCAGAGCAT chrI:6136572-6136652 33 1.50e-05 CCGCCCGGTT AGCTCAGT CGGTAGAGCA chrIV:5038896-5038976 32 1.50e-05 GGGCCTCCTT AGCTCAGT TGGTAGAGCG chrV:6889031-6889111 64 4.49e-05 CGATTCACCT AGCTCACT CAGACATAC chrII:14248343-14248423 52 4.49e-05 AACGGAGAAG AGGTCAGT ATTCTGGTCT chrIV:12417280-12417360 54 4.49e-05 GACGCATCGA AGCTCACT GGCGTATACG chrM:2754-2834 30 4.49e-05 TTTACCATTA AGGTCAGT Aatttctatt chrIII:8106628-8106708 33 5.75e-05 CCGCTTCCGT AGCGCAGT AGGCAGCGCG chrV:2673977-2674057 41 7.14e-05 GCGCCTCATT GGCTCAGT GGCAGAGCGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGCTCAGT MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:19126014-19126094 1.5e-05 37_[+5]_35 chrIV:16398326-16398406 1.5e-05 65_[+5]_7 chrX:6593551-6593631 1.5e-05 52_[+5]_20 chrX:14804852-14804932 1.5e-05 32_[+5]_40 chrIII:535331-535411 1.5e-05 58_[+5]_14 chrI:11505492-11505572 1.5e-05 66_[+5]_6 chrIII:10707176-10707256 1.5e-05 25_[+5]_47 chrX:8638891-8638971 1.5e-05 38_[+5]_34 chrI:6136572-6136652 1.5e-05 32_[+5]_40 chrIV:5038896-5038976 1.5e-05 31_[+5]_41 chrV:6889031-6889111 4.5e-05 63_[+5]_9 chrII:14248343-14248423 4.5e-05 51_[+5]_21 chrIV:12417280-12417360 4.5e-05 53_[+5]_19 chrM:2754-2834 4.5e-05 29_[+5]_43 chrIII:8106628-8106708 5.8e-05 32_[+5]_40 chrV:2673977-2674057 7.1e-05 40_[+5]_32 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGCTCAGT MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AGCTCAGT width=8 seqs=16 chrV:19126014-19126094 ( 38) AGCTCAGT 1 chrIV:16398326-16398406 ( 66) AGCTCAGT 1 chrX:6593551-6593631 ( 53) AGCTCAGT 1 chrX:14804852-14804932 ( 33) AGCTCAGT 1 chrIII:535331-535411 ( 59) AGCTCAGT 1 chrI:11505492-11505572 ( 67) AGCTCAGT 1 chrIII:10707176-10707256 ( 26) AGCTCAGT 1 chrX:8638891-8638971 ( 39) AGCTCAGT 1 chrI:6136572-6136652 ( 33) AGCTCAGT 1 chrIV:5038896-5038976 ( 32) AGCTCAGT 1 chrV:6889031-6889111 ( 64) AGCTCACT 1 chrII:14248343-14248423 ( 52) AGGTCAGT 1 chrIV:12417280-12417360 ( 54) AGCTCACT 1 chrM:2754-2834 ( 30) AGGTCAGT 1 chrIII:8106628-8106708 ( 33) AGCGCAGT 1 chrV:2673977-2674057 ( 41) GGCTCAGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGCTCAGT MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.1543 E= 5.5e-002 189 -1064 -191 -1064 -1064 -1064 209 -1064 -1064 190 -91 -1064 -1064 -1064 -191 175 -1064 210 -1064 -1064 198 -1064 -1064 -1064 -1064 -90 189 -1064 -1064 -1064 -1064 185 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGCTCAGT MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 16 E= 5.5e-002 0.937500 0.000000 0.062500 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.875000 0.125000 0.000000 0.000000 0.000000 0.062500 0.937500 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.125000 0.875000 0.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGCTCAGT MEME-5 regular expression -------------------------------------------------------------------------------- AGCTCAGT -------------------------------------------------------------------------------- Time 20.95 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrM:197-277 1.00e+00 80 chrV:1821432-1821512 2.66e-05 23_[+1(4.30e-05)]_4_[+2(1.77e-05)]_\ 37 chrM:1748-1828 9.47e-01 80 chrII:6898131-6898211 6.49e-01 80 chrIII:4542539-4542619 3.43e-05 9_[+4(4.76e-05)]_63 chrM:5415-5495 9.97e-01 80 chrV:9583074-9583154 5.86e-04 32_[+3(5.61e-05)]_4_[+2(3.87e-05)]_\ 28 chrV:14425247-14425327 5.75e-04 56_[+2(3.87e-05)]_16 chrX:12445644-12445724 5.32e-01 80 chrX:9296774-9296854 1.46e-03 27_[+1(1.16e-05)]_45 chrII:8325317-8325397 3.21e-03 21_[+3(4.63e-05)]_4_[+2(3.87e-05)]_\ 39 chrM:6425-6505 9.97e-01 80 chrM:10284-10364 8.43e-01 80 chrII:5399306-5399386 6.03e-03 64_[+1(3.31e-05)]_8 chrI:14708105-14708185 1.12e-06 37_[+1(1.16e-05)]_17_[+3(9.14e-06)]_\ 10 chrM:11495-11575 9.11e-01 80 chrIV:9316205-9316285 4.38e-05 16_[+4(7.03e-05)]_56 chrI:1175845-1175925 2.61e-04 11_[+1(3.31e-05)]_13_[+3(9.77e-05)]_\ 40 chrI:12004926-12005006 5.56e-03 11_[+3(9.77e-05)]_61 chrV:14524344-14524424 6.53e-04 32_[+2(3.87e-05)]_31_[+1(2.14e-05)]_\ 1 chrIII:13293210-13293290 4.29e-05 7_[+1(2.14e-05)]_14_[+1(2.14e-05)]_\ 4_[+2(3.87e-05)]_2_[+1(2.14e-05)]_21 chrV:9930769-9930849 6.99e-04 19_[+3(5.61e-05)]_18_[+4(4.76e-05)]_\ 27 chrM:8260-8340 2.04e-01 80 chrI:14606047-14606127 1.18e-02 80 chrV:3587784-3587864 1.69e-07 7_[+4(1.92e-05)]_26_[+2(1.77e-05)]_\ 3_[+1(2.14e-05)]_20 chrV:18719984-18720064 9.42e-01 80 chrII:4238049-4238129 3.27e-05 31_[+1(3.31e-05)]_14_[+4(7.03e-05)]_\ 19 chrIII:1824688-1824768 6.01e-06 12_[+4(7.03e-05)]_60 chrII:8716471-8716551 1.84e-01 80 chrM:3528-3608 1.00e+00 80 chrIV:11310736-11310816 6.86e-04 58_[+4(4.76e-05)]_14 chrIII:3664397-3664477 3.37e-06 23_[+3(2.74e-05)]_1_[+2(1.77e-05)]_\ 3_[+1(1.16e-05)]_29 chrIV:15289588-15289668 8.11e-01 80 chrV:7230990-7231070 6.45e-07 15_[+4(1.92e-05)]_22_[+3(5.61e-05)]_\ 14_[+1(1.16e-05)]_5 chrX:3969497-3969577 2.47e-01 80 chrII:3808262-3808342 2.84e-07 3_[+4(2.85e-05)]_22_[+1(1.16e-05)]_\ 4_[+2(3.87e-05)]_7_[+4(4.76e-05)]_12 chrIV:11605044-11605124 1.23e-06 29_[+4(1.92e-05)]_11_[+2(3.87e-05)]_\ 3_[+1(1.16e-05)]_13 chrIV:5038896-5038976 7.31e-02 31_[+5(1.50e-05)]_41 chrI:3547035-3547115 1.70e-03 18_[+2(3.87e-05)]_54 chrII:6565279-6565359 1.71e-01 80 chrIV:17120673-17120753 1.30e-04 51_[+2(1.77e-05)]_3_[+1(1.16e-05)]_\ 10 chrM:2754-2834 2.26e-01 29_[+5(4.49e-05)]_43 chrI:9176319-9176399 8.23e-02 80 chrII:6407828-6407908 8.30e-01 80 chrM:3204-3284 1.00e+00 80 chrV:13176503-13176583 5.64e-03 66_[+4(1.92e-05)]_6 chrI:14646707-14646787 3.28e-03 11_[+2(3.87e-05)]_14_[+2(3.87e-05)]_\ 1_[+1(9.83e-05)]_30 chrIII:11236927-11237007 1.83e-04 20_[+4(7.03e-05)]_33_[+1(2.14e-05)]_\ 11 chrM:9072-9152 9.99e-01 80 chrI:1444161-1444241 2.13e-05 30_[+3(9.14e-06)]_3_[+2(1.77e-05)]_\ 31 chrIV:14013857-14013937 1.79e-01 80 chrI:4132239-4132319 2.95e-04 16_[+2(9.06e-05)]_31_[+4(4.76e-05)]_\ 17 chrI:4633673-4633753 9.60e-02 42_[+2(9.06e-05)]_30 chrIII:3175151-3175231 2.23e-04 10_[+1(3.31e-05)]_33_[+4(2.85e-05)]_\ 21 chrV:20852166-20852246 1.36e-04 25_[+3(9.14e-06)]_47 chrV:11239337-11239417 2.33e-04 41_[+2(3.87e-05)]_31 chrI:3873935-3874015 1.07e-05 6_[+4(7.03e-05)]_16_[+1(2.14e-05)]_\ 17_[+4(1.92e-05)]_17 chrIV:16863626-16863706 1.04e-06 7_[+2(1.77e-05)]_16_[+4(1.92e-05)]_\ 17_[+1(2.14e-05)]_16 chrM:7152-7232 1.00e+00 80 chrX:12426908-12426988 8.52e-01 80 chrIV:5371048-5371128 1.57e-03 80 chrM:11253-11333 9.87e-01 80 chrII:6346425-6346505 9.95e-01 80 chrI:6136572-6136652 3.13e-03 32_[+5(1.50e-05)]_40 chrII:10303919-10303999 2.56e-05 17_[+3(9.14e-06)]_1_[+2(3.87e-05)]_\ 46 chrX:12423633-12423713 3.36e-01 80 chrV:6709226-6709306 1.85e-05 13_[+3(9.14e-06)]_5_[+2(1.77e-05)]_\ 46 chrM:1007-1087 9.43e-01 80 chrX:8156184-8156264 2.58e-02 80 chrV:18721119-18721199 9.73e-01 80 chrII:7708740-7708820 2.06e-05 13_[+3(9.14e-06)]_5_[+2(3.87e-05)]_\ 46 chrIV:16946900-16946980 1.31e-03 64_[+4(1.92e-05)]_8 chrX:1522804-1522884 5.89e-01 80 chrIII:3916789-3916869 5.83e-06 20_[+4(7.03e-05)]_14_[+3(9.14e-06)]_\ 11_[+4(1.92e-05)]_11 chrV:8631547-8631627 1.43e-04 22_[+3(2.74e-05)]_2_[+2(3.87e-05)]_\ 3_[+1(9.83e-05)]_29 chrV:6785253-6785333 6.45e-03 48_[+2(3.87e-05)]_24 chrIV:1981109-1981189 1.18e-04 21_[+4(4.76e-05)]_32_[+1(9.83e-05)]_\ 11 chrII:6835546-6835626 9.33e-01 80 chrV:4029778-4029858 7.54e-01 80 chrM:4690-4770 4.65e-01 80 chrII:6559636-6559716 8.78e-01 80 chrI:7094966-7095046 5.58e-02 9_[+2(9.06e-05)]_63 chrIII:8768049-8768129 6.90e-03 33_[+4(7.03e-05)]_39 chrI:11673366-11673446 7.95e-01 80 chrM:2325-2405 1.79e-01 80 chrIII:8971805-8971885 5.40e-01 80 chrV:13962171-13962251 3.54e-04 32_[+3(9.77e-05)]_15_[+4(1.92e-05)]_\ 17 chrIV:12417280-12417360 1.03e-01 53_[+5(4.49e-05)]_19 chrI:11323346-11323426 2.34e-04 13_[+4(7.03e-05)]_13_[+3(2.74e-05)]_\ 38 chrIII:1600814-1600894 7.17e-01 80 chrV:14038614-14038694 6.49e-01 80 chrII:6937350-6937430 1.66e-01 80 chrII:11676130-11676210 4.25e-03 17_[+1(7.46e-05)]_55 chrV:19722987-19723067 1.93e-02 80 chrII:6535790-6535870 9.84e-01 80 chrV:2697890-2697970 2.53e-02 80 chrM:12408-12488 3.76e-01 80 chrV:14855829-14855909 4.28e-01 80 chrII:6696280-6696360 8.79e-01 80 chrIV:14576628-14576708 8.78e-01 80 chrI:12065878-12065958 6.44e-03 80 chrII:6453733-6453813 9.91e-01 80 chrIV:12447881-12447961 5.09e-01 80 chrX:5816663-5816743 2.48e-01 80 chrIII:11467978-11468058 2.45e-01 80 chrV:19629443-19629523 4.99e-01 80 chrII:14248343-14248423 9.25e-02 51_[+5(4.49e-05)]_21 chrIV:1908791-1908871 1.07e-01 80 chrX:16271313-16271393 2.12e-01 80 chrX:8638891-8638971 9.18e-02 38_[+5(1.50e-05)]_34 chrI:9332931-9333011 9.89e-01 80 chrV:4731549-4731629 9.88e-04 29_[+4(9.05e-05)]_13_[+3(9.14e-06)]_\ 22 chrII:7374301-7374381 1.19e-05 14_[+1(2.14e-05)]_8_[+4(1.92e-05)]_\ 42 chrIII:8650414-8650494 5.63e-01 80 chrIII:13063081-13063161 7.16e-01 80 chrIV:13386184-13386264 2.39e-03 50_[+4(7.03e-05)]_22 chrX:14228854-14228934 6.94e-01 80 chrM:7388-7468 4.14e-01 80 chrM:9283-9363 9.75e-01 80 chrX:16928306-16928386 4.70e-01 80 chrIII:9463006-9463086 9.77e-01 80 chrX:1441879-1441959 4.18e-01 80 chrI:1575682-1575762 3.70e-01 80 chrX:12692306-12692386 8.26e-01 80 chrIV:4810513-4810593 2.54e-04 42_[+1(6.29e-05)]_30 chrI:6756468-6756548 4.61e-01 80 chrIII:4578492-4578572 9.82e-01 80 chrI:14721586-14721666 1.03e-06 32_[+3(9.14e-06)]_5_[+2(1.77e-05)]_\ 3_[+1(2.14e-05)]_16 chrII:5293473-5293553 3.73e-02 80 chrX:3914483-3914563 1.07e-01 80 chrIII:3249195-3249275 9.49e-01 80 chrII:6776544-6776624 3.66e-01 80 chrV:11113331-11113411 1.56e-05 30_[+1(3.31e-05)]_4_[+2(1.77e-05)]_\ 3_[+1(9.83e-05)]_19 chrV:2673977-2674057 2.04e-02 40_[+5(7.14e-05)]_32 chrI:488384-488464 1.31e-01 80 chrI:4176019-4176099 6.41e-01 80 chrIV:16865695-16865775 1.09e-03 22_[+1(3.31e-05)]_50 chrM:9833-9913 8.97e-01 80 chrV:6098996-6099076 9.24e-01 80 chrI:11517258-11517338 1.92e-01 80 chrX:5407338-5407418 5.87e-01 80 chrIII:13268980-13269060 1.87e-05 5_[+1(1.16e-05)]_13_[+3(2.74e-05)]_\ 46 chrI:6091096-6091176 1.77e-03 29_[+1(7.46e-05)]_43 chrI:11579712-11579792 1.25e-02 62_[+4(1.92e-05)]_10 chrI:6532080-6532160 1.30e-01 80 chrV:13041794-13041874 8.85e-01 80 chrII:14249795-14249875 8.23e-01 80 chrX:8646477-8646557 1.40e-01 80 chrIII:4171139-4171219 3.17e-03 22_[+3(9.77e-05)]_50 chrI:13310276-13310356 1.98e-01 80 chrX:5319379-5319459 9.46e-01 80 chrIII:8653074-8653154 2.02e-02 80 chrII:7022706-7022786 4.47e-01 80 chrV:10579082-10579162 2.76e-02 80 chrIII:4019949-4020029 3.53e-03 39_[+3(5.61e-05)]_33 chrIV:16400871-16400951 7.62e-01 80 chrI:5312807-5312887 1.54e-01 80 chrV:14689379-14689459 8.54e-01 80 chrI:14737418-14737498 2.67e-02 80 chrIII:4568707-4568787 1.26e-03 16_[+4(4.76e-05)]_16_[+4(7.03e-05)]_\ 32 chrII:6721699-6721779 3.06e-01 80 chrX:4444244-4444324 1.32e-01 80 chrIII:10707176-10707256 2.34e-04 25_[+5(1.50e-05)]_28_[+2(5.37e-05)]_\ 11 chrIV:16776024-16776104 1.29e-01 80 chrIII:5024542-5024622 2.47e-01 80 chrIV:3233136-3233216 9.95e-01 80 chrX:12843671-12843751 4.39e-01 80 chrX:1858775-1858855 3.06e-01 80 chrI:11505492-11505572 3.42e-02 66_[+5(1.50e-05)]_6 chrIV:620454-620534 8.50e-01 80 chrX:14115669-14115749 7.43e-01 80 chrV:9544422-9544502 1.18e-02 10_[+1(1.16e-05)]_62 chrI:1958523-1958603 5.77e-04 22_[+4(7.03e-05)]_3_[+2(5.37e-05)]_\ 4_[+4(7.03e-05)]_13_[+4(2.85e-05)]_6 chrV:11610618-11610698 7.43e-04 16_[+3(6.69e-05)]_18_[+4(7.95e-05)]_\ 30 chrV:20694134-20694214 5.16e-01 80 chrX:14480465-14480545 7.13e-01 80 chrIII:5555090-5555170 1.75e-07 24_[+4(7.95e-05)]_3_[+2(5.37e-05)]_\ 3_[+3(9.14e-06)]_26 chrIV:10374049-10374129 1.68e-01 80 chrII:6355882-6355962 1.63e-01 80 chrX:16604734-16604814 8.83e-01 80 chrIII:9629956-9630036 5.58e-03 10_[+2(3.87e-05)]_14_[+2(3.87e-05)]_\ 40 chrV:14876450-14876530 6.18e-01 80 chrI:11910979-11911059 1.01e-02 53_[+1(3.31e-05)]_19 chrIV:9191318-9191398 9.11e-01 80 chrIII:10624808-10624888 6.66e-01 80 chrIII:535331-535411 4.31e-03 58_[+5(1.50e-05)]_14 chrIV:11026163-11026243 1.93e-01 80 chrX:5708038-5708118 4.77e-01 80 chrX:8386185-8386265 9.14e-01 80 chrV:53375-53455 7.60e-03 80 chrIV:9477718-9477798 9.21e-02 80 chrII:10388192-10388272 1.09e-04 19_[+4(4.76e-05)]_53 chrIV:1388264-1388344 2.25e-01 80 chrX:8971578-8971658 3.86e-01 80 chrX:12367657-12367737 1.29e-02 69_[+1(9.83e-05)]_3 chrI:8530041-8530121 9.05e-01 80 chrX:15492831-15492911 6.89e-01 80 chrIII:7499660-7499740 5.34e-01 80 chrV:9318220-9318300 1.64e-01 80 chrX:14804852-14804932 8.40e-04 32_[+5(1.50e-05)]_40 chrII:11473773-11473853 1.55e-01 80 chrI:10807226-10807306 3.84e-01 80 chrX:9637834-9637914 4.44e-01 80 chrIII:8106628-8106708 2.61e-02 32_[+5(5.75e-05)]_40 chrIV:16399234-16399314 9.86e-01 80 chrV:12780434-12780514 2.50e-01 80 chrIII:6344877-6344957 7.26e-01 80 chrX:3348109-3348189 9.62e-01 80 chrV:773385-773465 2.58e-01 80 chrIII:1142969-1143049 3.04e-02 80 chrV:6889031-6889111 5.47e-02 63_[+5(4.49e-05)]_9 chrX:6593551-6593631 4.53e-02 52_[+5(1.50e-05)]_20 chrX:3100003-3100083 1.47e-01 80 chrV:4194972-4195052 2.10e-01 80 chrX:1880897-1880977 3.69e-01 80 chrI:9267234-9267314 2.98e-01 80 chrX:10568506-10568586 5.13e-01 80 chrI:9665141-9665221 3.92e-01 80 chrX:13144389-13144469 5.73e-01 80 chrV:15551763-15551843 2.69e-01 80 chrII:3521496-3521576 1.91e-01 80 chrII:14635303-14635383 4.62e-01 80 chrIV:7039624-7039704 6.58e-03 11_[+2(1.77e-05)]_61 chrIV:16398326-16398406 1.81e-02 65_[+5(1.50e-05)]_7 chrI:8024667-8024747 3.70e-03 60_[+1(7.46e-05)]_12 chrX:10821305-10821385 8.88e-02 80 chrX:11935081-11935161 3.15e-01 80 chrII:5181689-5181769 4.97e-01 80 chrX:4789144-4789224 5.36e-01 80 chrIV:3524842-3524922 9.75e-01 80 chrIII:8887406-8887486 1.34e-01 9_[+2(5.37e-05)]_63 chrV:7060466-7060546 1.56e-02 47_[+2(5.37e-05)]_25 chrI:6799611-6799691 2.49e-01 80 chrIII:2768801-2768881 1.01e-03 40_[+2(3.87e-05)]_3_[+1(1.16e-05)]_\ 21 chrIII:9861626-9861706 6.96e-02 80 chrI:14113220-14113300 8.68e-05 16_[+4(7.03e-05)]_34_[+4(1.92e-05)]_\ 14 chrII:5292363-5292443 5.72e-01 80 chrI:5986323-5986403 1.11e-02 19_[+2(5.37e-05)]_53 chrII:4942497-4942577 7.57e-02 80 chrIII:1418845-1418925 1.86e-02 80 chrII:5661180-5661260 8.28e-02 80 chrI:8223154-8223234 1.40e-03 70_[+4(7.03e-05)]_2 chrII:8107278-8107358 8.44e-01 80 chrII:6853188-6853268 4.42e-01 80 chrI:2410091-2410171 2.18e-01 80 chrI:6835374-6835454 2.28e-02 64_[+4(1.92e-05)]_8 chrX:13512018-13512098 9.70e-01 80 chrIII:12874862-12874942 3.20e-04 24_[+3(5.61e-05)]_48 chrV:19126014-19126094 5.71e-03 37_[+5(1.50e-05)]_35 chrX:5812083-5812163 4.33e-03 33_[+1(1.16e-05)]_39 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n08.farnam.hpc.yale.internal ********************************************************************************