******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/worm/fasta/RankLinear2.0_40/mec-3.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrII:13560743-13560823 1.0000 80 chrII:1441661-1441741 1.0000 80 chrI:1893267-1893347 1.0000 80 chrI:664739-664819 1.0000 80 chrII:3552785-3552865 1.0000 80 chrII:2561672-2561752 1.0000 80 chrI:163346-163426 1.0000 80 chrI:5843650-5843730 1.0000 80 chrII:15239769-15239849 1.0000 80 chrII:11869199-11869279 1.0000 80 chrIII:175264-175344 1.0000 80 chrV:14319209-14319289 1.0000 80 chrI:4572072-4572152 1.0000 80 chrIV:4077195-4077275 1.0000 80 chrX:6334555-6334635 1.0000 80 chrI:12796505-12796585 1.0000 80 chrV:189604-189684 1.0000 80 chrIV:7754215-7754295 1.0000 80 chrI:634380-634460 1.0000 80 chrV:1425786-1425866 1.0000 80 chrI:743047-743127 1.0000 80 chrIV:3752844-3752924 1.0000 80 chrII:23898-23978 1.0000 80 chrIII:12245746-12245826 1.0000 80 chrII:3968224-3968304 1.0000 80 chrIV:1769224-1769304 1.0000 80 chrIII:6362993-6363073 1.0000 80 chrIV:3797522-3797602 1.0000 80 chrX:14290075-14290155 1.0000 80 chrV:19148535-19148615 1.0000 80 chrII:13930255-13930335 1.0000 80 chrIV:11565160-11565240 1.0000 80 chrII:889571-889651 1.0000 80 chrI:661614-661694 1.0000 80 chrI:3274595-3274675 1.0000 80 chrI:14756455-14756535 1.0000 80 chrI:7105832-7105912 1.0000 80 chrII:14075116-14075196 1.0000 80 chrV:16553068-16553148 1.0000 80 chrIV:139741-139821 1.0000 80 chrII:1421703-1421783 1.0000 80 chrIII:9767323-9767403 1.0000 80 chrIII:5675558-5675638 1.0000 80 chrI:10469111-10469191 1.0000 80 chrI:1109452-1109532 1.0000 80 chrIII:1052080-1052160 1.0000 80 chrIII:4763024-4763104 1.0000 80 chrI:11771115-11771195 1.0000 80 chrI:11790977-11791057 1.0000 80 chrV:5836204-5836284 1.0000 80 chrII:9225802-9225882 1.0000 80 chrV:8791468-8791548 1.0000 80 chrX:3123248-3123328 1.0000 80 chrIII:11093612-11093692 1.0000 80 chrII:15261183-15261263 1.0000 80 chrI:8709109-8709189 1.0000 80 chrII:12071634-12071714 1.0000 80 chrV:12510084-12510164 1.0000 80 chrIII:10857020-10857100 1.0000 80 chrIV:385228-385308 1.0000 80 chrIII:6013220-6013300 1.0000 80 chrX:11062523-11062603 1.0000 80 chrV:1380026-1380106 1.0000 80 chrIV:1687225-1687305 1.0000 80 chrII:8137512-8137592 1.0000 80 chrII:9013535-9013615 1.0000 80 chrIII:10322643-10322723 1.0000 80 chrI:933477-933557 1.0000 80 chrI:5176065-5176145 1.0000 80 chrI:737344-737424 1.0000 80 chrI:13421206-13421286 1.0000 80 chrIII:971036-971116 1.0000 80 chrIII:1213176-1213256 1.0000 80 chrII:3195713-3195793 1.0000 80 chrIII:10811102-10811182 1.0000 80 chrIII:11286255-11286335 1.0000 80 chrIV:4236131-4236211 1.0000 80 chrV:4648046-4648126 1.0000 80 chrX:15945840-15945920 1.0000 80 chrIII:4905606-4905686 1.0000 80 chrIII:3500005-3500085 1.0000 80 chrI:2710656-2710736 1.0000 80 chrV:17728073-17728153 1.0000 80 chrV:4667263-4667343 1.0000 80 chrIII:3476387-3476467 1.0000 80 chrIV:3523334-3523414 1.0000 80 chrX:17315082-17315162 1.0000 80 chrX:6134590-6134670 1.0000 80 chrIII:2557114-2557194 1.0000 80 chrIV:14098692-14098772 1.0000 80 chrI:15013994-15014074 1.0000 80 chrIV:9260948-9261028 1.0000 80 chrV:9625772-9625852 1.0000 80 chrV:193351-193431 1.0000 80 chrX:16742085-16742165 1.0000 80 chrV:443974-444054 1.0000 80 chrX:1202860-1202940 1.0000 80 chrI:3976348-3976428 1.0000 80 chrIV:3083410-3083490 1.0000 80 chrV:9618529-9618609 1.0000 80 chrII:13316836-13316916 1.0000 80 chrII:651452-651532 1.0000 80 chrV:20424901-20424981 1.0000 80 chrII:3724594-3724674 1.0000 80 chrI:1271080-1271160 1.0000 80 chrIII:11627650-11627730 1.0000 80 chrX:16579548-16579628 1.0000 80 chrI:4215749-4215829 1.0000 80 chrV:12024364-12024444 1.0000 80 chrII:8201626-8201706 1.0000 80 chrI:1595989-1596069 1.0000 80 chrIII:4196744-4196824 1.0000 80 chrV:5284759-5284839 1.0000 80 chrII:10681976-10682056 1.0000 80 chrI:13057-13137 1.0000 80 chrIII:5989382-5989462 1.0000 80 chrIII:11706191-11706271 1.0000 80 chrII:14077986-14078066 1.0000 80 chrV:12167228-12167308 1.0000 80 chrII:3547470-3547550 1.0000 80 chrI:1811273-1811353 1.0000 80 chrIV:2887437-2887517 1.0000 80 chrIII:13565006-13565086 1.0000 80 chrI:14236730-14236810 1.0000 80 chrIII:10123755-10123835 1.0000 80 chrX:11114360-11114440 1.0000 80 chrI:2487877-2487957 1.0000 80 chrI:3176559-3176639 1.0000 80 chrIII:13780674-13780754 1.0000 80 chrII:3482354-3482434 1.0000 80 chrIII:12673574-12673654 1.0000 80 chrII:15020439-15020519 1.0000 80 chrIV:6907564-6907644 1.0000 80 chrV:1197550-1197630 1.0000 80 chrX:3115606-3115686 1.0000 80 chrIV:2291257-2291337 1.0000 80 chrII:13270245-13270325 1.0000 80 chrIII:6551588-6551668 1.0000 80 chrII:12042382-12042462 1.0000 80 chrV:7084917-7084997 1.0000 80 chrIII:5308412-5308492 1.0000 80 chrV:18981123-18981203 1.0000 80 chrI:1280176-1280256 1.0000 80 chrIII:8850848-8850928 1.0000 80 chrV:18734138-18734218 1.0000 80 chrX:10078221-10078301 1.0000 80 chrV:199227-199307 1.0000 80 chrIV:8183419-8183499 1.0000 80 chrII:15256269-15256349 1.0000 80 chrV:10526076-10526156 1.0000 80 chrIV:16995576-16995656 1.0000 80 chrV:5917853-5917933 1.0000 80 chrII:1244738-1244818 1.0000 80 chrI:1416035-1416115 1.0000 80 chrIII:931564-931644 1.0000 80 chrX:7224744-7224824 1.0000 80 chrIII:5603692-5603772 1.0000 80 chrII:1134652-1134732 1.0000 80 chrII:13189425-13189505 1.0000 80 chrV:7746091-7746171 1.0000 80 chrI:1034353-1034433 1.0000 80 chrIII:65081-65161 1.0000 80 chrV:2127151-2127231 1.0000 80 chrI:4967588-4967668 1.0000 80 chrI:565610-565690 1.0000 80 chrV:13393486-13393566 1.0000 80 chrII:15089558-15089638 1.0000 80 chrII:2451153-2451233 1.0000 80 chrV:10478317-10478397 1.0000 80 chrI:8244071-8244151 1.0000 80 chrV:2603191-2603271 1.0000 80 chrII:4151856-4151936 1.0000 80 chrII:11012631-11012711 1.0000 80 chrI:2996035-2996115 1.0000 80 chrX:15849529-15849609 1.0000 80 chrV:14366767-14366847 1.0000 80 chrX:5764018-5764098 1.0000 80 chrV:116422-116502 1.0000 80 chrIV:4001667-4001747 1.0000 80 chrV:2638663-2638743 1.0000 80 chrIII:12558206-12558286 1.0000 80 chrII:3502793-3502873 1.0000 80 chrIII:11936113-11936193 1.0000 80 chrV:11029444-11029524 1.0000 80 chrIII:11290671-11290751 1.0000 80 chrI:1823219-1823299 1.0000 80 chrV:11124078-11124158 1.0000 80 chrIII:4930452-4930532 1.0000 80 chrII:14249544-14249624 1.0000 80 chrII:13325248-13325328 1.0000 80 chrX:15572250-15572330 1.0000 80 chrIII:11702152-11702232 1.0000 80 chrV:4653114-4653194 1.0000 80 chrII:8358607-8358687 1.0000 80 chrIV:8015998-8016078 1.0000 80 chrIII:6537398-6537478 1.0000 80 chrIII:4947490-4947570 1.0000 80 chrV:14933933-14934013 1.0000 80 chrII:15058371-15058451 1.0000 80 chrIII:11958150-11958230 1.0000 80 chrV:7774450-7774530 1.0000 80 chrII:11016019-11016099 1.0000 80 chrV:10356067-10356147 1.0000 80 chrI:6760271-6760351 1.0000 80 chrIII:11746891-11746971 1.0000 80 chrI:6836741-6836821 1.0000 80 chrII:476178-476258 1.0000 80 chrII:4791414-4791494 1.0000 80 chrIV:9048257-9048337 1.0000 80 chrIII:9704016-9704096 1.0000 80 chrIII:4986980-4987060 1.0000 80 chrX:16770994-16771074 1.0000 80 chrIII:5068976-5069056 1.0000 80 chrV:13715444-13715524 1.0000 80 chrIV:6631992-6632072 1.0000 80 chrI:7383311-7383391 1.0000 80 chrI:10097457-10097537 1.0000 80 chrII:6061661-6061741 1.0000 80 chrIII:4281085-4281165 1.0000 80 chrII:5901863-5901943 1.0000 80 chrV:10961489-10961569 1.0000 80 chrV:16401694-16401774 1.0000 80 chrIII:10811342-10811422 1.0000 80 chrI:2831369-2831449 1.0000 80 chrIII:10270954-10271034 1.0000 80 chrX:993129-993209 1.0000 80 chrV:13556812-13556892 1.0000 80 chrX:1120465-1120545 1.0000 80 chrII:8128926-8129006 1.0000 80 chrIII:3601506-3601586 1.0000 80 chrI:5084683-5084763 1.0000 80 chrV:12870088-12870168 1.0000 80 chrIV:6206523-6206603 1.0000 80 chrIII:12351498-12351578 1.0000 80 chrV:11039749-11039829 1.0000 80 chrX:3802844-3802924 1.0000 80 chrII:14528481-14528561 1.0000 80 chrIII:10855571-10855651 1.0000 80 chrI:5176360-5176440 1.0000 80 chrIV:10504024-10504104 1.0000 80 chrIV:3803395-3803475 1.0000 80 chrIII:10064291-10064371 1.0000 80 chrV:1003922-1004002 1.0000 80 chrIV:16415249-16415329 1.0000 80 chrI:8511410-8511490 1.0000 80 chrX:12656823-12656903 1.0000 80 chrIV:1858174-1858254 1.0000 80 chrI:3350061-3350141 1.0000 80 chrX:5056373-5056453 1.0000 80 chrII:4740124-4740204 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/worm/inference_raw/MEME/RankLinear2.0_40_mec-3/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/worm/fasta/RankLinear2.0_40/mec-3.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.231 C 0.26 G 0.262 T 0.247 Background letter frequencies (from file dataset with add-one prior applied): A 0.231 C 0.26 G 0.262 T 0.247 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF CTMGGCCA MEME-1 width = 8 sites = 32 llr = 279 E-value = 5.5e-006 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTMGGCCA MEME-1 Description -------------------------------------------------------------------------------- Simplified A :26::11a pos.-specific C 9:4::99: probability G :1:aa::: matrix T 17:::::: bits 2.1 * 1.9 ** * 1.7 ** ** 1.5 * ***** Relative 1.3 * ***** Entropy 1.1 * ****** (12.6 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CTAGGCCA consensus C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTMGGCCA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrII:4740124-4740204 60 1.59e-05 GTGCGAGTTT CTAGGCCA CGCGGAAATG chrI:8511410-8511490 47 1.59e-05 ACGGAGAAAG CTAGGCCA TAAGTGGGAT chrIV:6206523-6206603 52 1.59e-05 GGTTGTAATC CTAGGCCA CCGTGCTGGT chrV:13556812-13556892 44 1.59e-05 GCGGAGTTTT CTAGGCCA CCACTCAAGA chrIII:10270954-10271034 36 1.59e-05 GAGGAGAATT CTAGGCCA CGTCTCCTCC chrV:10356067-10356147 71 1.59e-05 GAGGGATATT CTAGGCCA TA chrII:3502793-3502873 31 1.59e-05 TTGGAGTTTT CTAGGCCA CGAGTTGCAT chrII:15089558-15089638 51 1.59e-05 CATTTGGTTC CTAGGCCA CGCGGCCGTG chrI:1034353-1034433 38 1.59e-05 GCGCGGGTTT CTAGGCCA CGGCCACCGA chrIII:8850848-8850928 8 1.59e-05 GGAAATT CTAGGCCA CGGATAACTA chrV:18981123-18981203 65 1.59e-05 TCAGAGTTTC CTAGGCCA CCGCCGGT chrI:15013994-15014074 41 1.59e-05 GGGTGGAATT CTAGGCCA CCAGATCATA chrV:11124078-11124158 67 3.38e-05 TCTCGGGTTC CTCGGCCA TTTTTA chrIII:12673574-12673654 7 3.38e-05 CCCCGA CTCGGCCA GGCAAGtttt chrIII:5675558-5675638 47 3.38e-05 GTTCGTCGGC CTCGGCCA CTGACCGTCG chrI:8709109-8709189 52 4.87e-05 ggtGGTCCGG CAAGGCCA GGCATACCAG chrIII:4930452-4930532 30 6.54e-05 TAGCCGCGGC CACGGCCA TGAGGTCATA chrV:2603191-2603271 21 6.54e-05 CTTCCTCGTC CACGGCCA TGCGAAATGC chrIV:16995576-16995656 36 6.54e-05 TTTCCTCTTC CACGGCCA CGCGGCCCCC chrI:3176559-3176639 48 6.54e-05 AAAGTTAGGC CACGGCCA CCACGGCCCC chrI:14756455-14756535 19 6.54e-05 AAACCTCGGT CACGGCCA TGCCACTTTT chrV:4648046-4648126 52 8.23e-05 TGTGGGAGGG CGAGGCCA CCTCCGCCTC chrX:12656823-12656903 5 9.64e-05 AACG CTAGGACA CCGCACGGCA chrIV:3803395-3803475 62 1.12e-04 CCGGAGATTT TTAGGCCA CACGACCGTG chrV:10526076-10526156 46 1.12e-04 GATAAAAAAG TTAGGCCA TCCTTTCTCA chrII:6061661-6061741 45 1.26e-04 GGGAAGTTTT CTAGGCAA CATGTGCAAT chrI:2710656-2710736 12 1.26e-04 TAGGCTTAAA CTAGGCAA ATCCTCCGCG chrIII:12351498-12351578 40 1.45e-04 AAACCTCGGT CGCGGCCA GGAAATTTTT chrIII:11286255-11286335 21 1.45e-04 TCCGGAGCCC CGCGGCCA CGGCCCCCAC chrIII:10064291-10064371 68 1.61e-04 GTGTACTCCA CTCGGACA ACATT chrIV:6631992-6632072 66 1.61e-04 GTGTACTCCA CTCGGACA ACTGGAG chrI:11771115-11771195 51 1.78e-04 GTTCAGCGTC TTCGGCCA TACGACGTGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTMGGCCA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:4740124-4740204 1.6e-05 59_[+1]_13 chrI:8511410-8511490 1.6e-05 46_[+1]_26 chrIV:6206523-6206603 1.6e-05 51_[+1]_21 chrV:13556812-13556892 1.6e-05 43_[+1]_29 chrIII:10270954-10271034 1.6e-05 35_[+1]_37 chrV:10356067-10356147 1.6e-05 70_[+1]_2 chrII:3502793-3502873 1.6e-05 30_[+1]_42 chrII:15089558-15089638 1.6e-05 50_[+1]_22 chrI:1034353-1034433 1.6e-05 37_[+1]_35 chrIII:8850848-8850928 1.6e-05 7_[+1]_65 chrV:18981123-18981203 1.6e-05 64_[+1]_8 chrI:15013994-15014074 1.6e-05 40_[+1]_32 chrV:11124078-11124158 3.4e-05 66_[+1]_6 chrIII:12673574-12673654 3.4e-05 6_[+1]_66 chrIII:5675558-5675638 3.4e-05 46_[+1]_26 chrI:8709109-8709189 4.9e-05 51_[+1]_21 chrIII:4930452-4930532 6.5e-05 29_[+1]_43 chrV:2603191-2603271 6.5e-05 20_[+1]_52 chrIV:16995576-16995656 6.5e-05 35_[+1]_37 chrI:3176559-3176639 6.5e-05 47_[+1]_25 chrI:14756455-14756535 6.5e-05 18_[+1]_54 chrV:4648046-4648126 8.2e-05 51_[+1]_21 chrX:12656823-12656903 9.6e-05 4_[+1]_68 chrIV:3803395-3803475 0.00011 61_[+1]_11 chrV:10526076-10526156 0.00011 45_[+1]_27 chrII:6061661-6061741 0.00013 44_[+1]_28 chrI:2710656-2710736 0.00013 11_[+1]_61 chrIII:12351498-12351578 0.00014 39_[+1]_33 chrIII:11286255-11286335 0.00014 20_[+1]_52 chrIII:10064291-10064371 0.00016 67_[+1]_5 chrIV:6631992-6632072 0.00016 65_[+1]_7 chrI:11771115-11771195 0.00018 50_[+1]_22 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTMGGCCA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTMGGCCA width=8 seqs=32 chrII:4740124-4740204 ( 60) CTAGGCCA 1 chrI:8511410-8511490 ( 47) CTAGGCCA 1 chrIV:6206523-6206603 ( 52) CTAGGCCA 1 chrV:13556812-13556892 ( 44) CTAGGCCA 1 chrIII:10270954-10271034 ( 36) CTAGGCCA 1 chrV:10356067-10356147 ( 71) CTAGGCCA 1 chrII:3502793-3502873 ( 31) CTAGGCCA 1 chrII:15089558-15089638 ( 51) CTAGGCCA 1 chrI:1034353-1034433 ( 38) CTAGGCCA 1 chrIII:8850848-8850928 ( 8) CTAGGCCA 1 chrV:18981123-18981203 ( 65) CTAGGCCA 1 chrI:15013994-15014074 ( 41) CTAGGCCA 1 chrV:11124078-11124158 ( 67) CTCGGCCA 1 chrIII:12673574-12673654 ( 7) CTCGGCCA 1 chrIII:5675558-5675638 ( 47) CTCGGCCA 1 chrI:8709109-8709189 ( 52) CAAGGCCA 1 chrIII:4930452-4930532 ( 30) CACGGCCA 1 chrV:2603191-2603271 ( 21) CACGGCCA 1 chrIV:16995576-16995656 ( 36) CACGGCCA 1 chrI:3176559-3176639 ( 48) CACGGCCA 1 chrI:14756455-14756535 ( 19) CACGGCCA 1 chrV:4648046-4648126 ( 52) CGAGGCCA 1 chrX:12656823-12656903 ( 5) CTAGGACA 1 chrIV:3803395-3803475 ( 62) TTAGGCCA 1 chrV:10526076-10526156 ( 46) TTAGGCCA 1 chrII:6061661-6061741 ( 45) CTAGGCAA 1 chrI:2710656-2710736 ( 12) CTAGGCAA 1 chrIII:12351498-12351578 ( 40) CGCGGCCA 1 chrIII:11286255-11286335 ( 21) CGCGGCCA 1 chrIII:10064291-10064371 ( 68) CTCGGACA 1 chrIV:6631992-6632072 ( 66) CTCGGACA 1 chrI:11771115-11771195 ( 51) TTCGGCCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTMGGCCA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.4765 E= 5.5e-006 -1164 180 -1164 -140 -30 -1164 -148 154 136 64 -1164 -1164 -1164 -1164 193 -1164 -1164 -1164 193 -1164 -130 180 -1164 -1164 -189 185 -1164 -1164 211 -1164 -1164 -1164 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTMGGCCA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 32 E= 5.5e-006 0.000000 0.906250 0.000000 0.093750 0.187500 0.000000 0.093750 0.718750 0.593750 0.406250 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.093750 0.906250 0.000000 0.000000 0.062500 0.937500 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTMGGCCA MEME-1 regular expression -------------------------------------------------------------------------------- CT[AC]GGCCA -------------------------------------------------------------------------------- Time 8.31 secs. ******************************************************************************** ******************************************************************************** MOTIF AAAGAARA MEME-2 width = 8 sites = 22 llr = 201 E-value = 3.2e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif AAAGAARA MEME-2 Description -------------------------------------------------------------------------------- Simplified A a9929a5a pos.-specific C ::1::::: probability G :1:81:5: matrix T :::::::: bits 2.1 * * * 1.9 * * * 1.7 * * * 1.5 *** ** * Relative 1.3 ****** * Entropy 1.1 ******** (13.2 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AAAGAAAA consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAGAARA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrII:8128926-8129006 41 9.20e-06 CGGCAGTTGG AAAGAAAA AAGGTCTCTC chrII:15089558-15089638 8 9.20e-06 TAATTTC AAAGAAAA AGTTAAATAT chrIII:5603692-5603772 48 9.20e-06 AAGATTCGAA AAAGAAAA CGGAGCGAAC chrI:3176559-3176639 24 9.20e-06 TACTGAAAAA AAAGAAAA TTGGAGAAAG chrX:3802844-3802924 52 1.96e-05 GGCTGCTGGT AAAGAAGA TGGCGGTGAG chrV:10961489-10961569 34 1.96e-05 CAATGACACG AAAGAAGA GCACACACAG chrX:3115606-3115686 28 1.96e-05 AAGAGAAGCG AAAGAAGA AAGCTGTCAA chrV:193351-193431 14 1.96e-05 GTGTTCAGCT AAAGAAGA GAAATCGAAA chrV:8791468-8791548 57 1.96e-05 TAGTGCTATC AAAGAAGA GGAGAAGCCT chrIII:10064291-10064371 11 2.77e-05 GAAACAACGA AAAAAAAA TCAAGCCTGG chrIII:4986980-4987060 50 2.77e-05 GTTCAAAACA AAAAAAAA CAGTTGAGTT chrI:10097457-10097537 14 3.69e-05 TTGTGGAGGC AAAAAAGA GCCCATCTGA chrV:7084917-7084997 57 3.69e-05 GCGGCAATTC AAAAAAGA ATAACAAGGG chrI:5176360-5176440 57 6.81e-05 TTTTCTTGAC AGAGAAAA AGTGTGCGCA chrV:12870088-12870168 38 6.81e-05 GCGGGATGGA AGAGAAAA CGCGCGCACT chrX:993129-993209 6 6.81e-05 GCCGG AGAGAAAA CGCACAAAGA chrI:2996035-2996115 53 6.81e-05 AAAGGGGAGC AACGAAAA GGGGATCTGG chrIV:385228-385308 57 6.81e-05 AAAGGGGAGC AACGAAAA GGGGAGCTGG chrI:3350061-3350141 24 1.04e-04 CTCTCGATGG AAAGGAGA CGGAGAAACG chrX:15945840-15945920 19 1.04e-04 CCCTGGACAA AAAGGAGA GGGTGGAAAC chrIII:10811102-10811182 3 1.04e-04 AA AAAGGAGA TCTGCGAAAA chrI:5176065-5176145 26 1.04e-04 CCAAGAGTAA AACGAAGA AGTGACGATT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAGAARA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:8128926-8129006 9.2e-06 40_[+2]_32 chrII:15089558-15089638 9.2e-06 7_[+2]_65 chrIII:5603692-5603772 9.2e-06 47_[+2]_25 chrI:3176559-3176639 9.2e-06 23_[+2]_49 chrX:3802844-3802924 2e-05 51_[+2]_21 chrV:10961489-10961569 2e-05 33_[+2]_39 chrX:3115606-3115686 2e-05 27_[+2]_45 chrV:193351-193431 2e-05 13_[+2]_59 chrV:8791468-8791548 2e-05 56_[+2]_16 chrIII:10064291-10064371 2.8e-05 10_[+2]_62 chrIII:4986980-4987060 2.8e-05 49_[+2]_23 chrI:10097457-10097537 3.7e-05 13_[+2]_59 chrV:7084917-7084997 3.7e-05 56_[+2]_16 chrI:5176360-5176440 6.8e-05 56_[+2]_16 chrV:12870088-12870168 6.8e-05 37_[+2]_35 chrX:993129-993209 6.8e-05 5_[+2]_67 chrI:2996035-2996115 6.8e-05 52_[+2]_20 chrIV:385228-385308 6.8e-05 56_[+2]_16 chrI:3350061-3350141 0.0001 23_[+2]_49 chrX:15945840-15945920 0.0001 18_[+2]_54 chrIII:10811102-10811182 0.0001 2_[+2]_70 chrI:5176065-5176145 0.0001 25_[+2]_47 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAGAARA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AAAGAARA width=8 seqs=22 chrII:8128926-8129006 ( 41) AAAGAAAA 1 chrII:15089558-15089638 ( 8) AAAGAAAA 1 chrIII:5603692-5603772 ( 48) AAAGAAAA 1 chrI:3176559-3176639 ( 24) AAAGAAAA 1 chrX:3802844-3802924 ( 52) AAAGAAGA 1 chrV:10961489-10961569 ( 34) AAAGAAGA 1 chrX:3115606-3115686 ( 28) AAAGAAGA 1 chrV:193351-193431 ( 14) AAAGAAGA 1 chrV:8791468-8791548 ( 57) AAAGAAGA 1 chrIII:10064291-10064371 ( 11) AAAAAAAA 1 chrIII:4986980-4987060 ( 50) AAAAAAAA 1 chrI:10097457-10097537 ( 14) AAAAAAGA 1 chrV:7084917-7084997 ( 57) AAAAAAGA 1 chrI:5176360-5176440 ( 57) AGAGAAAA 1 chrV:12870088-12870168 ( 38) AGAGAAAA 1 chrX:993129-993209 ( 6) AGAGAAAA 1 chrI:2996035-2996115 ( 53) AACGAAAA 1 chrIV:385228-385308 ( 57) AACGAAAA 1 chrI:3350061-3350141 ( 24) AAAGGAGA 1 chrX:15945840-15945920 ( 19) AAAGGAGA 1 chrIII:10811102-10811182 ( 3) AAAGGAGA 1 chrI:5176065-5176145 ( 26) AACGAAGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAGAARA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.5702 E= 3.2e-001 211 -1110 -1110 -1110 190 -1110 -94 -1110 190 -93 -1110 -1110 -35 -1110 164 -1110 190 -1110 -94 -1110 211 -1110 -1110 -1110 111 -1110 93 -1110 211 -1110 -1110 -1110 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAGAARA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 22 E= 3.2e-001 1.000000 0.000000 0.000000 0.000000 0.863636 0.000000 0.136364 0.000000 0.863636 0.136364 0.000000 0.000000 0.181818 0.000000 0.818182 0.000000 0.863636 0.000000 0.136364 0.000000 1.000000 0.000000 0.000000 0.000000 0.500000 0.000000 0.500000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAGAARA MEME-2 regular expression -------------------------------------------------------------------------------- AAAGAA[AG]A -------------------------------------------------------------------------------- Time 12.05 secs. ******************************************************************************** ******************************************************************************** MOTIF RAAATSGA MEME-3 width = 8 sites = 26 llr = 227 E-value = 1.3e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif RAAATSGA MEME-3 Description -------------------------------------------------------------------------------- Simplified A 5aaa::2a pos.-specific C :::::52: probability G 4::::56: matrix T 2:::a::: bits 2.1 **** * 1.9 **** * 1.7 **** * 1.5 **** * Relative 1.3 **** * Entropy 1.1 **** * (12.6 bits) 0.8 ***** * 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AAAATCGA consensus G GC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAAATSGA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrI:6836741-6836821 14 1.11e-05 GTTGGTTTGA AAAATCGA AACTTTTTCC chrV:2603191-2603271 57 1.11e-05 TCAAATTGGG AAAATCGA ACGGAGCTCA chrV:193351-193431 29 1.11e-05 AGAGAAATCG AAAATCGA GCTCCCGAGC chrIII:10855571-10855651 9 2.22e-05 ATTTAAAT AAAATGGA GCAACAGGAG chrI:3176559-3176639 69 2.22e-05 CGGCCCCACG AAAATGGA ATCT chrI:15013994-15014074 58 2.22e-05 ACCAGATCAT AAAATGGA GGGAAGGAGC chrX:11062523-11062603 40 2.22e-05 GGTCCAGTTC AAAATGGA AATCAGCCAA chrV:199227-199307 18 3.48e-05 CCATTACACC GAAATCGA TTCGAGGTGG chrX:11114360-11114440 65 4.74e-05 gctggagctg gaaatgga aacggcgc chrII:8201626-8201706 64 4.74e-05 AAGAACAATG GAAATGGA GGAACTGGC chrIV:1687225-1687305 72 4.74e-05 AAATTTGGGA GAAATGGA A chrII:23898-23978 30 4.74e-05 CCAAAGGGAG GAAATGGA GATAATGGAC chrV:189604-189684 54 5.84e-05 ACAGATTCCG AAAATCCA GTCATCAATG chrIV:4077195-4077275 30 5.84e-05 gtggaccaAG AAAATCCA GCGAAGAGTC chrIV:3803395-3803475 37 9.11e-05 GTGTTGCCCG TAAATCGA CTCGGAGCCG chrIII:10270954-10271034 11 9.11e-05 TGTCACATCG TAAATCGA CAGGGACGAG chrIV:8015998-8016078 61 9.11e-05 GAAAATTTCA AAAATCAA CGTGCGTTGC chrI:13057-13137 23 9.11e-05 TGGGACTCCG TAAATCGA CACACAGGGG chrI:4215749-4215829 32 9.11e-05 AAATCTCCCG TAAATCGA CAGGGACTAG chrIII:3476387-3476467 64 9.11e-05 AAACTTTAAC AAAATCAA TAATAGACA chrI:10469111-10469191 57 9.11e-05 GAAAATTTCA AAAATCAA CGTGCGTTGC chrII:11869199-11869279 8 1.04e-04 CACGATG GAAATCCA GGACATCCAG chrII:4740124-4740204 72 1.38e-04 AGGCCACGCG GAAATGCA C chrIII:5068976-5069056 28 1.38e-04 TATGGCCGAA GAAATGCA CAGTGTGTAC chrII:3195713-3195793 55 1.38e-04 aatgaggcgc gaaatgca ggcctctcgc chrI:7105832-7105912 41 1.60e-04 GGACAATCTG GAAATGAA GGACCAACTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAAATSGA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:6836741-6836821 1.1e-05 13_[+3]_59 chrV:2603191-2603271 1.1e-05 56_[+3]_16 chrV:193351-193431 1.1e-05 28_[+3]_44 chrIII:10855571-10855651 2.2e-05 8_[+3]_64 chrI:3176559-3176639 2.2e-05 68_[+3]_4 chrI:15013994-15014074 2.2e-05 57_[+3]_15 chrX:11062523-11062603 2.2e-05 39_[+3]_33 chrV:199227-199307 3.5e-05 17_[+3]_55 chrX:11114360-11114440 4.7e-05 64_[+3]_8 chrII:8201626-8201706 4.7e-05 63_[+3]_9 chrIV:1687225-1687305 4.7e-05 71_[+3]_1 chrII:23898-23978 4.7e-05 29_[+3]_43 chrV:189604-189684 5.8e-05 53_[+3]_19 chrIV:4077195-4077275 5.8e-05 29_[+3]_43 chrIV:3803395-3803475 9.1e-05 36_[+3]_36 chrIII:10270954-10271034 9.1e-05 10_[+3]_62 chrIV:8015998-8016078 9.1e-05 60_[+3]_12 chrI:13057-13137 9.1e-05 22_[+3]_50 chrI:4215749-4215829 9.1e-05 31_[+3]_41 chrIII:3476387-3476467 9.1e-05 63_[+3]_9 chrI:10469111-10469191 9.1e-05 56_[+3]_16 chrII:11869199-11869279 0.0001 7_[+3]_65 chrII:4740124-4740204 0.00014 71_[+3]_1 chrIII:5068976-5069056 0.00014 27_[+3]_45 chrII:3195713-3195793 0.00014 54_[+3]_18 chrI:7105832-7105912 0.00016 40_[+3]_32 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAAATSGA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RAAATSGA width=8 seqs=26 chrI:6836741-6836821 ( 14) AAAATCGA 1 chrV:2603191-2603271 ( 57) AAAATCGA 1 chrV:193351-193431 ( 29) AAAATCGA 1 chrIII:10855571-10855651 ( 9) AAAATGGA 1 chrI:3176559-3176639 ( 69) AAAATGGA 1 chrI:15013994-15014074 ( 58) AAAATGGA 1 chrX:11062523-11062603 ( 40) AAAATGGA 1 chrV:199227-199307 ( 18) GAAATCGA 1 chrX:11114360-11114440 ( 65) GAAATGGA 1 chrII:8201626-8201706 ( 64) GAAATGGA 1 chrIV:1687225-1687305 ( 72) GAAATGGA 1 chrII:23898-23978 ( 30) GAAATGGA 1 chrV:189604-189684 ( 54) AAAATCCA 1 chrIV:4077195-4077275 ( 30) AAAATCCA 1 chrIV:3803395-3803475 ( 37) TAAATCGA 1 chrIII:10270954-10271034 ( 11) TAAATCGA 1 chrIV:8015998-8016078 ( 61) AAAATCAA 1 chrI:13057-13137 ( 23) TAAATCGA 1 chrI:4215749-4215829 ( 32) TAAATCGA 1 chrIII:3476387-3476467 ( 64) AAAATCAA 1 chrI:10469111-10469191 ( 57) AAAATCAA 1 chrII:11869199-11869279 ( 8) GAAATCCA 1 chrII:4740124-4740204 ( 72) GAAATGCA 1 chrIII:5068976-5069056 ( 28) GAAATGCA 1 chrII:3195713-3195793 ( 55) GAAATGCA 1 chrI:7105832-7105912 ( 41) GAAATGAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAAATSGA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.3895 E= 1.3e+000 100 -1134 55 -68 211 -1134 -1134 -1134 211 -1134 -1134 -1134 211 -1134 -1134 -1134 -1134 -1134 -1134 202 -1134 105 82 -1134 -59 -17 123 -1134 211 -1134 -1134 -1134 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAAATSGA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 26 E= 1.3e+000 0.461538 0.000000 0.384615 0.153846 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.538462 0.461538 0.000000 0.153846 0.230769 0.615385 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAAATSGA MEME-3 regular expression -------------------------------------------------------------------------------- [AG]AAAT[CG][GC]A -------------------------------------------------------------------------------- Time 17.31 secs. ******************************************************************************** ******************************************************************************** MOTIF YCYMTTTT MEME-4 width = 8 sites = 44 llr = 339 E-value = 1.5e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif YCYMTTTT MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::32::: pos.-specific C 6766:::: probability G :::::::: matrix T 43418aaa bits 2.1 *** 1.9 *** 1.7 *** 1.5 *** Relative 1.3 **** Entropy 1.1 *** **** (11.1 bits) 0.8 *** **** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CCCCTTTT consensus TTTAA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCYMTTTT MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIV:1858174-1858254 42 1.70e-05 CCGCCACGGG CCCCTTTT CTCTTCTTTG chrI:5176360-5176440 11 1.70e-05 TTTCGCAGAT CCCCTTTT TGCAGATCCC chrIII:10811342-10811422 57 1.70e-05 TTTTGCAGAT CCCCTTTT TGCAGATCCC chrV:1197550-1197630 12 1.70e-05 TTTCGTATCT CCCCTTTT CGCAGATCCC chrIII:10123755-10123835 17 1.70e-05 TTTTGCAGAT CCCCTTTT CGTTCTGCTC chrIII:6013220-6013300 60 1.70e-05 TTTCGTTGCT CCCCTTTT CGTATCTCCC chrV:16553068-16553148 63 1.70e-05 TTTCGCAGAT CCCCTTTT TGCAGATCCC chrII:13930255-13930335 62 1.70e-05 CTGATTCTTT CCCCTTTT GCACTGACAC chrIII:8850848-8850928 52 3.32e-05 AAAACGAGTT CCTCTTTT CCTAGATTTA chrX:16579548-16579628 68 3.32e-05 TTTTGTGACT CCTCTTTT TTCAT chrI:13421206-13421286 32 3.32e-05 CTAAGCTCCG CCTCTTTT CTCCGGGTTT chrV:443974-444054 20 4.93e-05 TTCCATTCGG TCCCTTTT CCAGCCGATT chrV:11029444-11029524 44 6.44e-05 GACTAACTAT CCCATTTT CGATTTCTGC chrIV:1687225-1687305 26 6.44e-05 TCCGATAACC CCCATTTT GCAGTGCCTC chrI:743047-743127 48 6.44e-05 GCCTTTTGGT CCCATTTT TCCATTTTCC chrX:12656823-12656903 31 7.98e-05 CACCGCCCGT TCTCTTTT CCTCCCTGTC chrX:7224744-7224824 30 7.98e-05 TGCCTGCCCC TCTCTTTT AGGATCGATA chrIII:5989382-5989462 49 7.98e-05 CGACTCTTTT TCTCTTTT TTTTGCTGAC chrII:8128926-8129006 56 1.10e-04 AAAAAGGTCT CTCCTTTT CCCTCCTCTC chrII:4791414-4791494 18 1.10e-04 CGCGGAAAAT CCTATTTT GAACAACCGC chrIII:2557114-2557194 2 1.10e-04 A CCTATTTT GTTCAGCAGG chrII:15256269-15256349 52 1.25e-04 AGCATAATTT TCCATTTT AATGATACTA chrI:4572072-4572152 57 1.25e-04 TCACCGATAT TCCATTTT TCCCGTCTTT chrII:4740124-4740204 14 1.85e-04 AATTTAAATT TTCCTTTT TCCCGCCGAT chrV:2638663-2638743 13 1.85e-04 AAACAAAAAC CCCCATTT AAACTGCCGC chrX:15849529-15849609 69 1.99e-04 TGATTTTTAT CTCATTTT TGTT chrIII:9704016-9704096 18 2.29e-04 GGCAATGTTC TTTCTTTT TCCTCACCGC chrIII:11290671-11290751 19 2.29e-04 TTGGAAAAAC CCTCATTT TTCGAAATAT chrIII:4905606-4905686 6 2.29e-04 TACAA TTTCTTTT TGAAAATTGG chrII:889571-889651 33 2.29e-04 TTCTTACCTA CCTCATTT CTGCCAAGCA chrI:1280176-1280256 25 2.58e-04 GTGAGGTCTC CTTATTTT TAGCCGTTTT chrV:20424901-20424981 45 2.58e-04 ATTCAAATTT TCCCATTT CGCGGCGTTT chrX:6134590-6134670 67 2.58e-04 GGCGGACCCT CTTATTTT GGGCTC chrII:14249544-14249624 1 2.85e-04 . TTCATTTT GTCTTCTTTC chrIII:10855571-10855651 47 3.16e-04 TTTGTCTCTC TCTCATTT CCGGTGTGTA chrIV:9260948-9261028 20 3.57e-04 CGTCCATCTT CTCCATTT GGTCCACGTT chrIV:16995576-16995656 9 3.71e-04 AACTTCCC TCCAATTT CCCCCGTCAT chrX:3115606-3115686 67 3.86e-04 AGGGAGCATG CCTTTTTT ATTTCT chrI:1823219-1823299 11 4.16e-04 AGAGAATGAA TCCTTTTT TCCAGAACTT chrV:12870088-12870168 66 5.00e-04 TCCTCTGCCA TTTCATTT GCGCGGA chrIII:175264-175344 25 5.13e-04 agttgtgaaa cttaattt tgttgtcggc chrII:13270245-13270325 63 5.26e-04 GTTTGCACAT TTCAATTT GCGAAAATgt chrI:4967588-4967668 7 5.40e-04 TCCACG CTTTTTTT CAGAAATTTT chrV:1003922-1004002 59 5.70e-04 TAGTTTTGTA TTCTTTTT CTTAGCTTTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCYMTTTT MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:1858174-1858254 1.7e-05 41_[+4]_31 chrI:5176360-5176440 1.7e-05 10_[+4]_62 chrIII:10811342-10811422 1.7e-05 56_[+4]_16 chrV:1197550-1197630 1.7e-05 11_[+4]_61 chrIII:10123755-10123835 1.7e-05 16_[+4]_56 chrIII:6013220-6013300 1.7e-05 59_[+4]_13 chrV:16553068-16553148 1.7e-05 62_[+4]_10 chrII:13930255-13930335 1.7e-05 61_[+4]_11 chrIII:8850848-8850928 3.3e-05 51_[+4]_21 chrX:16579548-16579628 3.3e-05 67_[+4]_5 chrI:13421206-13421286 3.3e-05 31_[+4]_41 chrV:443974-444054 4.9e-05 19_[+4]_53 chrV:11029444-11029524 6.4e-05 43_[+4]_29 chrIV:1687225-1687305 6.4e-05 25_[+4]_47 chrI:743047-743127 6.4e-05 47_[+4]_25 chrX:12656823-12656903 8e-05 30_[+4]_42 chrX:7224744-7224824 8e-05 29_[+4]_43 chrIII:5989382-5989462 8e-05 48_[+4]_24 chrII:8128926-8129006 0.00011 55_[+4]_17 chrII:4791414-4791494 0.00011 17_[+4]_55 chrIII:2557114-2557194 0.00011 1_[+4]_71 chrII:15256269-15256349 0.00012 51_[+4]_21 chrI:4572072-4572152 0.00012 56_[+4]_16 chrII:4740124-4740204 0.00018 13_[+4]_59 chrV:2638663-2638743 0.00018 12_[+4]_60 chrX:15849529-15849609 0.0002 68_[+4]_4 chrIII:9704016-9704096 0.00023 17_[+4]_55 chrIII:11290671-11290751 0.00023 18_[+4]_54 chrIII:4905606-4905686 0.00023 5_[+4]_67 chrII:889571-889651 0.00023 32_[+4]_40 chrI:1280176-1280256 0.00026 24_[+4]_48 chrV:20424901-20424981 0.00026 44_[+4]_28 chrX:6134590-6134670 0.00026 66_[+4]_6 chrII:14249544-14249624 0.00029 [+4]_72 chrIII:10855571-10855651 0.00032 46_[+4]_26 chrIV:9260948-9261028 0.00036 19_[+4]_53 chrIV:16995576-16995656 0.00037 8_[+4]_64 chrX:3115606-3115686 0.00039 66_[+4]_6 chrI:1823219-1823299 0.00042 10_[+4]_62 chrV:12870088-12870168 0.0005 65_[+4]_7 chrIII:175264-175344 0.00051 24_[+4]_48 chrII:13270245-13270325 0.00053 62_[+4]_10 chrI:4967588-4967668 0.00054 6_[+4]_66 chrV:1003922-1004002 0.00057 58_[+4]_14 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCYMTTTT MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF YCYMTTTT width=8 seqs=44 chrIV:1858174-1858254 ( 42) CCCCTTTT 1 chrI:5176360-5176440 ( 11) CCCCTTTT 1 chrIII:10811342-10811422 ( 57) CCCCTTTT 1 chrV:1197550-1197630 ( 12) CCCCTTTT 1 chrIII:10123755-10123835 ( 17) CCCCTTTT 1 chrIII:6013220-6013300 ( 60) CCCCTTTT 1 chrV:16553068-16553148 ( 63) CCCCTTTT 1 chrII:13930255-13930335 ( 62) CCCCTTTT 1 chrIII:8850848-8850928 ( 52) CCTCTTTT 1 chrX:16579548-16579628 ( 68) CCTCTTTT 1 chrI:13421206-13421286 ( 32) CCTCTTTT 1 chrV:443974-444054 ( 20) TCCCTTTT 1 chrV:11029444-11029524 ( 44) CCCATTTT 1 chrIV:1687225-1687305 ( 26) CCCATTTT 1 chrI:743047-743127 ( 48) CCCATTTT 1 chrX:12656823-12656903 ( 31) TCTCTTTT 1 chrX:7224744-7224824 ( 30) TCTCTTTT 1 chrIII:5989382-5989462 ( 49) TCTCTTTT 1 chrII:8128926-8129006 ( 56) CTCCTTTT 1 chrII:4791414-4791494 ( 18) CCTATTTT 1 chrIII:2557114-2557194 ( 2) CCTATTTT 1 chrII:15256269-15256349 ( 52) TCCATTTT 1 chrI:4572072-4572152 ( 57) TCCATTTT 1 chrII:4740124-4740204 ( 14) TTCCTTTT 1 chrV:2638663-2638743 ( 13) CCCCATTT 1 chrX:15849529-15849609 ( 69) CTCATTTT 1 chrIII:9704016-9704096 ( 18) TTTCTTTT 1 chrIII:11290671-11290751 ( 19) CCTCATTT 1 chrIII:4905606-4905686 ( 6) TTTCTTTT 1 chrII:889571-889651 ( 33) CCTCATTT 1 chrI:1280176-1280256 ( 25) CTTATTTT 1 chrV:20424901-20424981 ( 45) TCCCATTT 1 chrX:6134590-6134670 ( 67) CTTATTTT 1 chrII:14249544-14249624 ( 1) TTCATTTT 1 chrIII:10855571-10855651 ( 47) TCTCATTT 1 chrIV:9260948-9261028 ( 20) CTCCATTT 1 chrIV:16995576-16995656 ( 9) TCCAATTT 1 chrX:3115606-3115686 ( 67) CCTTTTTT 1 chrI:1823219-1823299 ( 11) TCCTTTTT 1 chrV:12870088-12870168 ( 66) TTTCATTT 1 chrIII:175264-175344 ( 25) CTTAATTT 1 chrII:13270245-13270325 ( 63) TTCAATTT 1 chrI:4967588-4967668 ( 7) CTTTTTTT 1 chrV:1003922-1004002 ( 59) TTCTTTTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCYMTTTT MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.2284 E= 1.5e+002 -1210 124 -1210 65 -1210 139 -1210 37 -1210 113 -1210 81 46 118 -1210 -144 -3 -1210 -1210 165 -1210 -1210 -1210 202 -1210 -1210 -1210 202 -1210 -1210 -1210 202 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCYMTTTT MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 44 E= 1.5e+002 0.000000 0.613636 0.000000 0.386364 0.000000 0.681818 0.000000 0.318182 0.000000 0.568182 0.000000 0.431818 0.318182 0.590909 0.000000 0.090909 0.227273 0.000000 0.000000 0.772727 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCYMTTTT MEME-4 regular expression -------------------------------------------------------------------------------- [CT][CT][CT][CA][TA]TTT -------------------------------------------------------------------------------- Time 22.38 secs. ******************************************************************************** ******************************************************************************** MOTIF AWTTYAAA MEME-5 width = 8 sites = 11 llr = 111 E-value = 1.0e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif AWTTYAAA MEME-5 Description -------------------------------------------------------------------------------- Simplified A a5:::aaa pos.-specific C ::::4::: probability G :::::::: matrix T :5aa6::: bits 2.1 * ** *** 1.9 * ** *** 1.7 * ** *** 1.5 * ** *** Relative 1.3 * ** *** Entropy 1.1 ******** (14.6 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AATTTAAA consensus T C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AWTTYAAA MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrII:4740124-4740204 4 9.91e-06 TCA AATTTAAA TTTTCCTTTT chrII:2451153-2451233 29 9.91e-06 ATAAAATTTG AATTTAAA ACTTTGGCGC chrIII:8850848-8850928 36 9.91e-06 TTTTGGCGGA AATTTAAA AACGAGTTCC chrIII:12351498-12351578 69 2.05e-05 TTTTTTTTTA ATTTTAAA AATT chrIII:12673574-12673654 48 2.05e-05 tttttCAGCA ATTTTAAA CGTTTTTTTT chrI:14756455-14756535 45 2.05e-05 TTTTGCGGGA ATTTTAAA TTGGAGTTTT chrIII:6362993-6363073 58 2.05e-05 ACGTGATTCG ATTTTAAA TCTACAACAA chrIII:4930452-4930532 58 3.09e-05 TTTGCGCGGT AATTCAAA TTATATTTCT chrIII:13780674-13780754 5 3.09e-05 GAGA AATTCAAA TTCTTCACGG chrIII:11286255-11286335 54 3.09e-05 TTTGCGCGGC AATTCAAA TCATTGTAGC chrI:1034353-1034433 12 4.21e-05 GAGTGTTCAA ATTTCAAA TCTCCCTCGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AWTTYAAA MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:4740124-4740204 9.9e-06 3_[+5]_69 chrII:2451153-2451233 9.9e-06 28_[+5]_44 chrIII:8850848-8850928 9.9e-06 35_[+5]_37 chrIII:12351498-12351578 2.1e-05 68_[+5]_4 chrIII:12673574-12673654 2.1e-05 47_[+5]_25 chrI:14756455-14756535 2.1e-05 44_[+5]_28 chrIII:6362993-6363073 2.1e-05 57_[+5]_15 chrIII:4930452-4930532 3.1e-05 57_[+5]_15 chrIII:13780674-13780754 3.1e-05 4_[+5]_68 chrIII:11286255-11286335 3.1e-05 53_[+5]_19 chrI:1034353-1034433 4.2e-05 11_[+5]_61 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AWTTYAAA MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AWTTYAAA width=8 seqs=11 chrII:4740124-4740204 ( 4) AATTTAAA 1 chrII:2451153-2451233 ( 29) AATTTAAA 1 chrIII:8850848-8850928 ( 36) AATTTAAA 1 chrIII:12351498-12351578 ( 69) ATTTTAAA 1 chrIII:12673574-12673654 ( 48) ATTTTAAA 1 chrI:14756455-14756535 ( 45) ATTTTAAA 1 chrIII:6362993-6363073 ( 58) ATTTTAAA 1 chrIII:4930452-4930532 ( 58) AATTCAAA 1 chrIII:13780674-13780754 ( 5) AATTCAAA 1 chrIII:11286255-11286335 ( 54) AATTCAAA 1 chrI:1034353-1034433 ( 12) ATTTCAAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AWTTYAAA MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.7222 E= 1.0e+003 211 -1010 -1010 -1010 124 -1010 -1010 88 -1010 -1010 -1010 202 -1010 -1010 -1010 202 -1010 48 -1010 137 211 -1010 -1010 -1010 211 -1010 -1010 -1010 211 -1010 -1010 -1010 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AWTTYAAA MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 11 E= 1.0e+003 1.000000 0.000000 0.000000 0.000000 0.545455 0.000000 0.000000 0.454545 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.363636 0.000000 0.636364 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AWTTYAAA MEME-5 regular expression -------------------------------------------------------------------------------- A[AT]TT[TC]AAA -------------------------------------------------------------------------------- Time 25.91 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:13560743-13560823 3.14e-01 80 chrII:1441661-1441741 9.74e-01 80 chrI:1893267-1893347 9.46e-01 80 chrI:664739-664819 9.72e-01 80 chrII:3552785-3552865 3.81e-01 80 chrII:2561672-2561752 9.33e-01 80 chrI:163346-163426 4.71e-01 80 chrI:5843650-5843730 6.78e-02 80 chrII:15239769-15239849 9.26e-01 80 chrII:11869199-11869279 1.84e-02 80 chrIII:175264-175344 1.64e-01 80 chrV:14319209-14319289 7.04e-01 80 chrI:4572072-4572152 1.25e-01 80 chrIV:4077195-4077275 2.24e-02 29_[+3(5.84e-05)]_43 chrX:6334555-6334635 4.06e-01 80 chrI:12796505-12796585 8.88e-01 80 chrV:189604-189684 6.00e-02 53_[+3(5.84e-05)]_19 chrIV:7754215-7754295 7.01e-01 80 chrI:634380-634460 7.59e-01 80 chrV:1425786-1425866 1.77e-01 80 chrI:743047-743127 1.03e-01 47_[+4(6.44e-05)]_25 chrIV:3752844-3752924 8.02e-01 80 chrII:23898-23978 2.59e-02 29_[+3(4.74e-05)]_43 chrIII:12245746-12245826 9.56e-01 80 chrII:3968224-3968304 8.38e-01 80 chrIV:1769224-1769304 7.77e-01 80 chrIII:6362993-6363073 9.99e-03 57_[+5(2.05e-05)]_15 chrIV:3797522-3797602 9.96e-01 80 chrX:14290075-14290155 8.34e-01 80 chrV:19148535-19148615 8.29e-01 80 chrII:13930255-13930335 5.52e-02 61_[+4(1.70e-05)]_11 chrIV:11565160-11565240 7.21e-01 80 chrII:889571-889651 2.60e-01 80 chrI:661614-661694 6.77e-01 80 chrI:3274595-3274675 9.99e-01 80 chrI:14756455-14756535 9.14e-05 18_[+1(6.54e-05)]_18_[+5(2.05e-05)]_\ 28 chrI:7105832-7105912 1.49e-01 80 chrII:14075116-14075196 8.69e-01 80 chrV:16553068-16553148 1.80e-01 2_[+4(1.70e-05)]_22_[+4(1.70e-05)]_\ 7_[+4(1.70e-05)]_7_[+4(1.70e-05)]_10 chrIV:139741-139821 9.95e-01 80 chrII:1421703-1421783 8.19e-01 80 chrIII:9767323-9767403 1.37e-01 80 chrIII:5675558-5675638 2.42e-01 46_[+1(3.38e-05)]_26 chrI:10469111-10469191 6.43e-04 50_[+5(4.21e-05)]_22 chrI:1109452-1109532 5.96e-01 80 chrIII:1052080-1052160 7.54e-01 80 chrIII:4763024-4763104 9.33e-01 80 chrI:11771115-11771195 5.41e-01 80 chrI:11790977-11791057 8.10e-01 80 chrV:5836204-5836284 1.00e+00 80 chrII:9225802-9225882 6.21e-01 80 chrV:8791468-8791548 6.41e-02 56_[+2(1.96e-05)]_16 chrX:3123248-3123328 6.10e-01 80 chrIII:11093612-11093692 3.52e-02 80 chrII:15261183-15261263 9.56e-01 80 chrI:8709109-8709189 2.19e-01 51_[+1(4.87e-05)]_21 chrII:12071634-12071714 3.62e-01 80 chrV:12510084-12510164 9.63e-01 80 chrIII:10857020-10857100 3.28e-01 80 chrIV:385228-385308 7.24e-03 56_[+2(6.81e-05)]_16 chrIII:6013220-6013300 5.03e-03 44_[+4(1.70e-05)]_7_[+4(1.70e-05)]_\ 13 chrX:11062523-11062603 3.29e-03 39_[+3(2.22e-05)]_33 chrV:1380026-1380106 5.67e-01 80 chrIV:1687225-1687305 8.58e-04 25_[+4(6.44e-05)]_38_[+3(4.74e-05)]_\ 1 chrII:8137512-8137592 1.30e-01 80 chrII:9013535-9013615 1.21e-01 80 chrIII:10322643-10322723 1.61e-01 80 chrI:933477-933557 8.57e-01 80 chrI:5176065-5176145 1.13e-01 80 chrI:737344-737424 9.70e-01 80 chrI:13421206-13421286 9.21e-04 31_[+4(3.32e-05)]_32_[+4(6.44e-05)]_\ 1 chrIII:971036-971116 9.94e-01 80 chrIII:1213176-1213256 9.70e-01 80 chrII:3195713-3195793 3.79e-01 80 chrIII:10811102-10811182 5.04e-02 80 chrIII:11286255-11286335 1.66e-03 53_[+5(3.09e-05)]_19 chrIV:4236131-4236211 5.23e-01 80 chrV:4648046-4648126 5.97e-02 51_[+1(8.23e-05)]_21 chrX:15945840-15945920 7.17e-02 80 chrIII:4905606-4905686 2.18e-02 80 chrIII:3500005-3500085 2.28e-02 80 chrI:2710656-2710736 7.69e-02 80 chrV:17728073-17728153 5.81e-01 80 chrV:4667263-4667343 9.70e-01 80 chrIII:3476387-3476467 2.06e-03 63_[+3(9.11e-05)]_9 chrIV:3523334-3523414 6.73e-01 80 chrX:17315082-17315162 6.40e-01 80 chrX:6134590-6134670 8.69e-02 80 chrIII:2557114-2557194 4.21e-02 80 chrIV:14098692-14098772 8.80e-01 80 chrI:15013994-15014074 5.56e-04 11_[+1(3.38e-05)]_21_[+1(1.59e-05)]_\ 9_[+3(2.22e-05)]_15 chrIV:9260948-9261028 4.71e-01 80 chrV:9625772-9625852 9.96e-01 80 chrV:193351-193431 3.87e-04 13_[+2(1.96e-05)]_7_[+3(1.11e-05)]_\ 44 chrX:16742085-16742165 1.25e-01 80 chrV:443974-444054 4.67e-02 19_[+4(4.93e-05)]_53 chrX:1202860-1202940 9.78e-01 80 chrI:3976348-3976428 3.34e-02 80 chrIV:3083410-3083490 9.32e-01 80 chrV:9618529-9618609 8.07e-01 80 chrII:13316836-13316916 4.24e-01 80 chrII:651452-651532 9.62e-01 80 chrV:20424901-20424981 1.10e-02 80 chrII:3724594-3724674 5.48e-01 80 chrI:1271080-1271160 9.22e-01 80 chrIII:11627650-11627730 6.65e-01 80 chrX:16579548-16579628 1.90e-01 26_[+4(3.32e-05)]_33_[+4(3.32e-05)]_\ 5 chrI:4215749-4215829 7.94e-02 31_[+3(9.11e-05)]_41 chrV:12024364-12024444 2.24e-01 80 chrII:8201626-8201706 3.90e-03 63_[+3(4.74e-05)]_9 chrI:1595989-1596069 9.32e-01 80 chrIII:4196744-4196824 6.84e-01 80 chrV:5284759-5284839 5.79e-01 80 chrII:10681976-10682056 2.97e-01 80 chrI:13057-13137 1.11e-01 22_[+3(9.11e-05)]_50 chrIII:5989382-5989462 2.91e-01 48_[+4(7.98e-05)]_24 chrIII:11706191-11706271 8.74e-01 80 chrII:14077986-14078066 3.48e-01 80 chrV:12167228-12167308 9.93e-01 80 chrII:3547470-3547550 6.49e-01 80 chrI:1811273-1811353 2.59e-01 80 chrIV:2887437-2887517 8.49e-01 80 chrIII:13565006-13565086 5.15e-01 80 chrI:14236730-14236810 8.37e-02 80 chrIII:10123755-10123835 6.87e-02 1_[+4(1.70e-05)]_7_[+4(1.70e-05)]_9_\ [+4(1.70e-05)]_39 chrX:11114360-11114440 3.90e-03 64_[+3(4.74e-05)]_8 chrI:2487877-2487957 2.88e-01 80 chrI:3176559-3176639 1.48e-05 23_[+2(9.20e-06)]_16_[+1(6.54e-05)]_\ 13_[+3(2.22e-05)]_4 chrIII:13780674-13780754 2.27e-02 4_[+5(3.09e-05)]_68 chrII:3482354-3482434 2.49e-01 80 chrIII:12673574-12673654 5.23e-04 6_[+1(3.38e-05)]_33_[+5(2.05e-05)]_\ 25 chrII:15020439-15020519 5.89e-01 80 chrIV:6907564-6907644 8.55e-01 80 chrV:1197550-1197630 1.92e-01 11_[+4(1.70e-05)]_7_[+4(1.70e-05)]_\ 7_[+4(1.70e-05)]_9_[+4(4.93e-05)]_14 chrX:3115606-3115686 3.51e-03 27_[+2(1.96e-05)]_45 chrIV:2291257-2291337 9.96e-01 80 chrII:13270245-13270325 1.03e-01 80 chrIII:6551588-6551668 3.44e-01 80 chrII:12042382-12042462 8.12e-01 80 chrV:7084917-7084997 3.13e-04 51_[+5(3.09e-05)]_21 chrIII:5308412-5308492 4.42e-01 80 chrV:18981123-18981203 5.49e-03 64_[+1(1.59e-05)]_8 chrI:1280176-1280256 4.65e-03 80 chrIII:8850848-8850928 9.30e-08 7_[+1(1.59e-05)]_20_[+5(9.91e-06)]_\ 8_[+4(3.32e-05)]_21 chrV:18734138-18734218 9.64e-01 80 chrX:10078221-10078301 1.05e-01 80 chrV:199227-199307 1.00e-01 17_[+3(3.48e-05)]_55 chrIV:8183419-8183499 9.44e-01 80 chrII:15256269-15256349 8.89e-02 80 chrV:10526076-10526156 4.03e-02 80 chrIV:16995576-16995656 3.62e-02 35_[+1(6.54e-05)]_37 chrV:5917853-5917933 5.24e-01 80 chrII:1244738-1244818 1.33e-01 80 chrI:1416035-1416115 9.60e-02 80 chrIII:931564-931644 5.10e-01 80 chrX:7224744-7224824 8.70e-02 29_[+4(7.98e-05)]_43 chrIII:5603692-5603772 3.06e-03 47_[+2(9.20e-06)]_25 chrII:1134652-1134732 1.75e-02 80 chrII:13189425-13189505 8.88e-01 80 chrV:7746091-7746171 4.53e-01 80 chrI:1034353-1034433 1.00e-03 11_[+5(4.21e-05)]_18_[+1(1.59e-05)]_\ 35 chrIII:65081-65161 7.52e-01 80 chrV:2127151-2127231 9.66e-02 80 chrI:4967588-4967668 1.64e-01 80 chrI:565610-565690 1.00e+00 80 chrV:13393486-13393566 9.97e-01 80 chrII:15089558-15089638 5.96e-06 7_[+2(9.20e-06)]_35_[+1(1.59e-05)]_\ 22 chrII:2451153-2451233 8.23e-03 28_[+5(9.91e-06)]_44 chrV:10478317-10478397 3.51e-01 80 chrI:8244071-8244151 9.96e-01 80 chrV:2603191-2603271 1.22e-04 20_[+1(6.54e-05)]_28_[+3(1.11e-05)]_\ 16 chrII:4151856-4151936 7.95e-01 80 chrII:11012631-11012711 1.00e+00 80 chrI:2996035-2996115 1.31e-01 52_[+2(6.81e-05)]_20 chrX:15849529-15849609 3.35e-01 80 chrV:14366767-14366847 9.97e-01 80 chrX:5764018-5764098 1.90e-01 80 chrV:116422-116502 1.47e-01 80 chrIV:4001667-4001747 9.87e-01 80 chrV:2638663-2638743 2.89e-04 80 chrIII:12558206-12558286 9.98e-01 80 chrII:3502793-3502873 4.15e-03 30_[+1(1.59e-05)]_42 chrIII:11936113-11936193 5.31e-01 80 chrV:11029444-11029524 2.36e-02 43_[+4(6.44e-05)]_29 chrIII:11290671-11290751 6.73e-02 80 chrI:1823219-1823299 1.11e-01 80 chrV:11124078-11124158 1.17e-03 66_[+1(3.38e-05)]_6 chrIII:4930452-4930532 1.58e-03 29_[+1(6.54e-05)]_20_[+5(3.09e-05)]_\ 15 chrII:14249544-14249624 2.23e-01 80 chrII:13325248-13325328 1.00e+00 80 chrX:15572250-15572330 9.93e-01 80 chrIII:11702152-11702232 1.00e+00 80 chrV:4653114-4653194 9.37e-01 80 chrII:8358607-8358687 9.33e-01 80 chrIV:8015998-8016078 6.43e-04 54_[+5(4.21e-05)]_18 chrIII:6537398-6537478 7.48e-01 80 chrIII:4947490-4947570 8.07e-01 80 chrV:14933933-14934013 9.32e-01 80 chrII:15058371-15058451 5.54e-01 80 chrIII:11958150-11958230 9.66e-01 80 chrV:7774450-7774530 5.91e-01 80 chrII:11016019-11016099 9.41e-01 80 chrV:10356067-10356147 7.47e-03 70_[+1(1.59e-05)]_2 chrI:6760271-6760351 2.87e-01 80 chrIII:11746891-11746971 1.50e-01 80 chrI:6836741-6836821 1.82e-02 13_[+3(1.11e-05)]_59 chrII:476178-476258 3.26e-01 80 chrII:4791414-4791494 1.12e-03 80 chrIV:9048257-9048337 5.94e-01 80 chrIII:9704016-9704096 5.51e-01 80 chrIII:4986980-4987060 9.03e-03 21_[+2(6.81e-05)]_19_[+2(2.77e-05)]_\ 24 chrX:16770994-16771074 4.30e-01 80 chrIII:5068976-5069056 1.26e-02 80 chrV:13715444-13715524 6.72e-01 80 chrIV:6631992-6632072 7.68e-02 80 chrI:7383311-7383391 7.49e-01 80 chrI:10097457-10097537 6.98e-02 13_[+2(3.69e-05)]_59 chrII:6061661-6061741 1.62e-01 80 chrIII:4281085-4281165 8.61e-01 80 chrII:5901863-5901943 3.71e-01 80 chrV:10961489-10961569 6.51e-03 33_[+2(1.96e-05)]_39 chrV:16401694-16401774 9.17e-01 80 chrIII:10811342-10811422 1.36e-01 11_[+4(1.70e-05)]_7_[+4(1.70e-05)]_\ 7_[+4(1.70e-05)]_7_[+4(1.70e-05)]_7_[+4(1.70e-05)]_1 chrI:2831369-2831449 6.77e-02 80 chrIII:10270954-10271034 1.31e-03 10_[+3(9.11e-05)]_17_[+1(1.59e-05)]_\ 37 chrX:993129-993209 2.74e-02 5_[+2(6.81e-05)]_67 chrV:13556812-13556892 1.86e-03 43_[+1(1.59e-05)]_29 chrX:1120465-1120545 5.03e-01 80 chrII:8128926-8129006 2.26e-03 40_[+2(9.20e-06)]_32 chrIII:3601506-3601586 4.87e-02 80 chrI:5084683-5084763 8.71e-01 80 chrV:12870088-12870168 5.32e-03 37_[+2(6.81e-05)]_35 chrIV:6206523-6206603 1.58e-03 51_[+1(1.59e-05)]_11_[+1(3.38e-05)]_\ 2 chrIII:12351498-12351578 2.94e-04 68_[+5(2.05e-05)]_4 chrV:11039749-11039829 1.04e-01 80 chrX:3802844-3802924 8.45e-02 51_[+2(1.96e-05)]_21 chrII:14528481-14528561 9.20e-03 13_[+5(8.43e-05)]_59 chrIII:10855571-10855651 3.91e-04 8_[+3(2.22e-05)]_64 chrI:5176360-5176440 6.54e-03 10_[+4(1.70e-05)]_7_[+4(1.70e-05)]_\ 23_[+2(6.81e-05)]_16 chrIV:10504024-10504104 2.62e-01 80 chrIV:3803395-3803475 5.93e-04 36_[+3(9.11e-05)]_36 chrIII:10064291-10064371 2.45e-04 9_[+2(2.77e-05)]_63 chrV:1003922-1004002 1.69e-01 80 chrIV:16415249-16415329 1.96e-01 80 chrI:8511410-8511490 7.14e-04 46_[+1(1.59e-05)]_26 chrX:12656823-12656903 1.69e-02 4_[+1(9.64e-05)]_18_[+4(7.98e-05)]_\ 42 chrIV:1858174-1858254 1.74e-01 41_[+4(1.70e-05)]_31 chrI:3350061-3350141 4.14e-02 80 chrX:5056373-5056453 8.59e-01 80 chrII:4740124-4740204 6.03e-07 3_[+5(9.91e-06)]_48_[+1(1.59e-05)]_\ 13 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n12.farnam.hpc.yale.internal ********************************************************************************