******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/worm/fasta/RankLinear2.0_40/mdl-1.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrII:11595720-11595800 1.0000 80 chrX:6729082-6729162 1.0000 80 chrX:6746918-6746998 1.0000 80 chrI:2125272-2125352 1.0000 80 chrIV:8234314-8234394 1.0000 80 chrX:16161099-16161179 1.0000 80 chrV:2212086-2212166 1.0000 80 chrX:16163556-16163636 1.0000 80 chrIV:12711216-12711296 1.0000 80 chrX:10903567-10903647 1.0000 80 chrI:9598443-9598523 1.0000 80 chrIV:3258656-3258736 1.0000 80 chrV:19524810-19524890 1.0000 80 chrI:1845033-1845113 1.0000 80 chrX:5468013-5468093 1.0000 80 chrX:6729744-6729824 1.0000 80 chrX:6747118-6747198 1.0000 80 chrIII:8732104-8732184 1.0000 80 chrX:6745643-6745723 1.0000 80 chrIII:11040749-11040829 1.0000 80 chrI:10766730-10766810 1.0000 80 chrIV:17174283-17174363 1.0000 80 chrIII:3621781-3621861 1.0000 80 chrII:12053650-12053730 1.0000 80 chrIV:10682341-10682421 1.0000 80 chrX:7129583-7129663 1.0000 80 chrII:4726276-4726356 1.0000 80 chrV:10715303-10715383 1.0000 80 chrV:10247167-10247247 1.0000 80 chrII:10693791-10693871 1.0000 80 chrV:12096071-12096151 1.0000 80 chrIII:3952240-3952320 1.0000 80 chrX:2319782-2319862 1.0000 80 chrIII:10632781-10632861 1.0000 80 chrV:13839544-13839624 1.0000 80 chrIV:15393374-15393454 1.0000 80 chrI:9736402-9736482 1.0000 80 chrV:667578-667658 1.0000 80 chrV:8603380-8603460 1.0000 80 chrX:16324374-16324454 1.0000 80 chrV:10020103-10020183 1.0000 80 chrX:5339458-5339538 1.0000 80 chrX:6739551-6739631 1.0000 80 chrI:5626467-5626547 1.0000 80 chrX:5645823-5645903 1.0000 80 chrV:6348290-6348370 1.0000 80 chrII:13640374-13640454 1.0000 80 chrIII:8926618-8926698 1.0000 80 chrX:13147222-13147302 1.0000 80 chrIII:6395847-6395927 1.0000 80 chrI:4333898-4333978 1.0000 80 chrII:2962679-2962759 1.0000 80 chrIII:6216137-6216217 1.0000 80 chrI:9853119-9853199 1.0000 80 chrX:8752701-8752781 1.0000 80 chrI:12540794-12540874 1.0000 80 chrIII:9698721-9698801 1.0000 80 chrII:5142271-5142351 1.0000 80 chrX:16145383-16145463 1.0000 80 chrII:9606807-9606887 1.0000 80 chrIV:8463207-8463287 1.0000 80 chrIV:4211006-4211086 1.0000 80 chrV:5027874-5027954 1.0000 80 chrII:7280006-7280086 1.0000 80 chrX:1458945-1459025 1.0000 80 chrV:10160176-10160256 1.0000 80 chrV:4524525-4524605 1.0000 80 chrX:11738748-11738828 1.0000 80 chrII:13065427-13065507 1.0000 80 chrII:8765288-8765368 1.0000 80 chrIII:10636782-10636862 1.0000 80 chrIII:620487-620567 1.0000 80 chrIII:7292713-7292793 1.0000 80 chrI:10403833-10403913 1.0000 80 chrV:14510884-14510964 1.0000 80 chrX:15622203-15622283 1.0000 80 chrX:4564843-4564923 1.0000 80 chrV:5490399-5490479 1.0000 80 chrV:6998621-6998701 1.0000 80 chrX:15081627-15081707 1.0000 80 chrII:8267832-8267912 1.0000 80 chrX:12844337-12844417 1.0000 80 chrX:15105266-15105346 1.0000 80 chrIV:8464354-8464434 1.0000 80 chrX:16414744-16414824 1.0000 80 chrX:6744694-6744774 1.0000 80 chrII:11853777-11853857 1.0000 80 chrIII:8733839-8733919 1.0000 80 chrII:7390497-7390577 1.0000 80 chrX:7578397-7578477 1.0000 80 chrX:4530804-4530884 1.0000 80 chrIII:6179200-6179280 1.0000 80 chrIII:5096884-5096964 1.0000 80 chrI:14074448-14074528 1.0000 80 chrII:12051782-12051862 1.0000 80 chrIII:2455104-2455184 1.0000 80 chrV:20710762-20710842 1.0000 80 chrX:11724019-11724099 1.0000 80 chrIV:7258395-7258475 1.0000 80 chrX:7559153-7559233 1.0000 80 chrIII:11989987-11990067 1.0000 80 chrX:17638586-17638666 1.0000 80 chrIII:9590326-9590406 1.0000 80 chrV:5032367-5032447 1.0000 80 chrX:5523132-5523212 1.0000 80 chrV:5712792-5712872 1.0000 80 chrIV:11901318-11901398 1.0000 80 chrIII:4968330-4968410 1.0000 80 chrV:3388500-3388580 1.0000 80 chrV:14212978-14213058 1.0000 80 chrII:12785550-12785630 1.0000 80 chrV:14948692-14948772 1.0000 80 chrX:8869401-8869481 1.0000 80 chrIV:302896-302976 1.0000 80 chrII:7944638-7944718 1.0000 80 chrIV:16178558-16178638 1.0000 80 chrV:8403288-8403368 1.0000 80 chrV:15774083-15774163 1.0000 80 chrV:11046896-11046976 1.0000 80 chrII:13196868-13196948 1.0000 80 chrIV:5605451-5605531 1.0000 80 chrIV:132197-132277 1.0000 80 chrX:5344119-5344199 1.0000 80 chrX:4143426-4143506 1.0000 80 chrI:7116814-7116894 1.0000 80 chrIII:9827360-9827440 1.0000 80 chrX:13325135-13325215 1.0000 80 chrV:6411390-6411470 1.0000 80 chrX:17504639-17504719 1.0000 80 chrV:10535556-10535636 1.0000 80 chrII:9620308-9620388 1.0000 80 chrX:12915247-12915327 1.0000 80 chrIV:1064509-1064589 1.0000 80 chrIII:9666844-9666924 1.0000 80 chrX:2116646-2116726 1.0000 80 chrII:7287281-7287361 1.0000 80 chrV:13336009-13336089 1.0000 80 chrIV:7166726-7166806 1.0000 80 chrIV:8146394-8146474 1.0000 80 chrIV:10007878-10007958 1.0000 80 chrI:10765767-10765847 1.0000 80 chrX:4504419-4504499 1.0000 80 chrV:11739962-11740042 1.0000 80 chrIII:3637355-3637435 1.0000 80 chrIV:11016030-11016110 1.0000 80 chrII:7343051-7343131 1.0000 80 chrX:17236328-17236408 1.0000 80 chrX:10231018-10231098 1.0000 80 chrIV:8366424-8366504 1.0000 80 chrIV:9737305-9737385 1.0000 80 chrV:14324664-14324744 1.0000 80 chrV:10432743-10432823 1.0000 80 chrV:4820772-4820852 1.0000 80 chrX:9540593-9540673 1.0000 80 chrX:6121930-6122010 1.0000 80 chrX:348304-348384 1.0000 80 chrIII:12446117-12446197 1.0000 80 chrX:16290730-16290810 1.0000 80 chrII:5307320-5307400 1.0000 80 chrV:11217541-11217621 1.0000 80 chrX:15497113-15497193 1.0000 80 chrIII:7273816-7273896 1.0000 80 chrIII:10399096-10399176 1.0000 80 chrII:2804443-2804523 1.0000 80 chrI:6260344-6260424 1.0000 80 chrIII:8983961-8984041 1.0000 80 chrX:17058460-17058540 1.0000 80 chrIII:8922141-8922221 1.0000 80 chrX:3020178-3020258 1.0000 80 chrV:8026506-8026586 1.0000 80 chrV:10723396-10723476 1.0000 80 chrIII:6180413-6180493 1.0000 80 chrI:10577258-10577338 1.0000 80 chrV:5687752-5687832 1.0000 80 chrI:3103239-3103319 1.0000 80 chrIV:7982203-7982283 1.0000 80 chrI:2659741-2659821 1.0000 80 chrI:14320487-14320567 1.0000 80 chrII:8650829-8650909 1.0000 80 chrX:14740111-14740191 1.0000 80 chrX:16559586-16559666 1.0000 80 chrX:4498204-4498284 1.0000 80 chrIV:5089120-5089200 1.0000 80 chrV:16354823-16354903 1.0000 80 chrIV:13109902-13109982 1.0000 80 chrV:10161137-10161217 1.0000 80 chrII:14404387-14404467 1.0000 80 chrII:9344186-9344266 1.0000 80 chrX:2316311-2316391 1.0000 80 chrX:14145828-14145908 1.0000 80 chrIV:4212790-4212870 1.0000 80 chrIII:5623592-5623672 1.0000 80 chrII:12064790-12064870 1.0000 80 chrIV:9516947-9517027 1.0000 80 chrIV:8481458-8481538 1.0000 80 chrV:903646-903726 1.0000 80 chrV:13333929-13334009 1.0000 80 chrX:12870241-12870321 1.0000 80 chrII:6345974-6346054 1.0000 80 chrII:11830769-11830849 1.0000 80 chrIII:5948551-5948631 1.0000 80 chrIV:4216308-4216388 1.0000 80 chrX:17421526-17421606 1.0000 80 chrI:9401886-9401966 1.0000 80 chrX:17515341-17515421 1.0000 80 chrX:8485559-8485639 1.0000 80 chrX:3102372-3102452 1.0000 80 chrV:13878351-13878431 1.0000 80 chrII:12050800-12050880 1.0000 80 chrIII:12843014-12843094 1.0000 80 chrV:11859255-11859335 1.0000 80 chrIII:13101260-13101340 1.0000 80 chrX:4139935-4140015 1.0000 80 chrIV:4471552-4471632 1.0000 80 chrII:5020809-5020889 1.0000 80 chrIII:6144598-6144678 1.0000 80 chrX:13748197-13748277 1.0000 80 chrIV:17441458-17441538 1.0000 80 chrIV:14609955-14610035 1.0000 80 chrV:9085899-9085979 1.0000 80 chrX:12234505-12234585 1.0000 80 chrI:8351209-8351289 1.0000 80 chrX:6932178-6932258 1.0000 80 chrX:14500025-14500105 1.0000 80 chrII:9291774-9291854 1.0000 80 chrX:17631828-17631908 1.0000 80 chrI:5384210-5384290 1.0000 80 chrV:12637974-12638054 1.0000 80 chrX:5628584-5628664 1.0000 80 chrIV:11814029-11814109 1.0000 80 chrV:6238467-6238547 1.0000 80 chrIII:8986118-8986198 1.0000 80 chrI:8344512-8344592 1.0000 80 chrII:7413425-7413505 1.0000 80 chrV:11885226-11885306 1.0000 80 chrX:6740670-6740750 1.0000 80 chrI:5540810-5540890 1.0000 80 chrX:7654148-7654228 1.0000 80 chrIII:5472913-5472993 1.0000 80 chrIII:12839088-12839168 1.0000 80 chrV:7225116-7225196 1.0000 80 chrV:6213355-6213435 1.0000 80 chrIII:5077277-5077357 1.0000 80 chrV:19212468-19212548 1.0000 80 chrX:17540136-17540216 1.0000 80 chrIII:9391114-9391194 1.0000 80 chrI:14075682-14075762 1.0000 80 chrX:4244673-4244753 1.0000 80 chrX:16130313-16130393 1.0000 80 chrIII:1682428-1682508 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/worm/inference_raw/MEME/RankLinear2.0_40_mdl-1/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/worm/fasta/RankLinear2.0_40/mdl-1.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.291 C 0.212 G 0.217 T 0.28 Background letter frequencies (from file dataset with add-one prior applied): A 0.291 C 0.212 G 0.217 T 0.28 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF NVCACGTG MEME-1 width = 8 sites = 127 llr = 926 E-value = 5.6e-071 ******************************************************************************** -------------------------------------------------------------------------------- Motif NVCACGTG MEME-1 Description -------------------------------------------------------------------------------- Simplified A 3319::1: pos.-specific C 349:9:1: probability G 32:::a:a matrix T 22::1:9: bits 2.2 * * 2.0 * * 1.8 * ** * 1.6 * ** * Relative 1.3 **** * Entropy 1.1 ****** (10.5 bits) 0.9 ****** 0.7 ****** 0.4 ****** 0.2 ****** 0.0 -------- Multilevel GCCACGTG consensus AA sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif NVCACGTG MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrI:2659741-2659821 5 7.93e-06 CTTC GCCACGTG ACTTTATGTA chrX:15497113-15497193 54 7.93e-06 ctcAGTTTCT GCCACGTG ACGTTTTTTT chrV:4820772-4820852 42 7.93e-06 CTCTCTCGAT GCCACGTG CTTCTGTTAG chrII:7944638-7944718 53 7.93e-06 AAACCGAGAC GCCACGTG CCTTGTTACT chrIII:6395847-6395927 43 7.93e-06 AGGATCGGGA GCCACGTG GCAGAGATGG chrV:19524810-19524890 15 7.93e-06 AAATTTTTGA GCCACGTG GCTGGGCGGA chrI:8344512-8344592 17 1.57e-05 CCATTATTTT CCCACGTG GTAAACAATA chrII:12050800-12050880 60 1.57e-05 CAAACCATCA CCCACGTG GCTATCTTCA chrV:8026506-8026586 55 1.57e-05 ATCTCTGTGT CCCACGTG TAAGAATACG chrX:4504419-4504499 42 1.57e-05 ACACTCGAGA CCCACGTG TCTTTCGAGC chrX:4143426-4143506 27 1.57e-05 CTCTTCTACA CCCACGTG TTGTCACTAG chrX:7578397-7578477 46 1.57e-05 TAAAAATTTG CCCACGTG GCGTTGCACA chrV:5490399-5490479 49 1.57e-05 CTATTACTCC CCCACGTG GTCGGTATGA chrX:1458945-1459025 39 1.57e-05 ACACCGCAAT CCCACGTG CGGGGAGACC chrV:8603380-8603460 13 1.57e-05 TTCAACCAAT CCCACGTG GCTTCATTAT chrIII:8732104-8732184 44 1.57e-05 GGACAGACAA CCCACGTG GGGTATCCTC chrIV:12711216-12711296 48 1.57e-05 CGCCCTCGCG CCCACGTG GGGGTCTTGC chrX:16163556-16163636 44 1.57e-05 AGTTGATGTC CCCACGTG TTGAGCAGGA chrIII:1682428-1682508 47 2.63e-05 ATGATCATGA ACCACGTG GAATTGGATA chrX:13748197-13748277 15 2.63e-05 ATGGTAGCAC ACCACGTG TGGAGGGTAG chrX:16290730-16290810 20 2.63e-05 AAACTTTGAA ACCACGTG TAGCAGACAT chrX:10231018-10231098 66 2.63e-05 CAAACCAGAT ACCACGTG TAATCGT chrIII:8926618-8926698 23 2.63e-05 CAGGTGTTCC ACCACGTG TAGAATGATG chrIII:12839088-12839168 44 3.72e-05 GAGTCCAAGA GACACGTG TGTGGGAAGA chrIV:13109902-13109982 68 3.72e-05 GAGAGAAAAA GACACGTG ATAAG chrII:13065427-13065507 45 3.72e-05 TGAAAACTAT GACACGTG TGTGATTCGA chrX:16161099-16161179 24 3.72e-05 GGGAAACAAT GACACGTG GAACATTATC chrIV:4471552-4471632 13 5.60e-05 GGGCAGAATG GGCACGTG CTCGGCCTCC chrI:9401886-9401966 42 5.60e-05 AGTGAGAGAG GGCACGTG TTTTTATGTG chrX:14740111-14740191 49 5.60e-05 GGAGAGCAAA CACACGTG TCCAGTAGTT chrIII:8922141-8922221 52 5.60e-05 GGTCTCTATT CACACGTG TTGGCAGGCA chrX:12915247-12915327 58 5.60e-05 TCTAATAGAT CACACGTG TTTTTTTTTC chrV:10535556-10535636 38 5.60e-05 GCTGGCAGAA CACACGTG AAGTCATCGA chrV:11046896-11046976 66 5.60e-05 GATTGTTGGC CACACGTG TGAGAAT chrV:20710762-20710842 53 5.60e-05 TCAGTGAGCA CACACGTG ACTCCTATTT chrIII:620487-620567 61 5.60e-05 AGTTGTTATT GGCACGTG CTTCAGGGTT chrV:10160176-10160256 35 5.60e-05 GTTGATGGAT GGCACGTG CGGAAAACTA chrII:2962679-2962759 5 5.60e-05 CGTT GGCACGTG GTCCGCCTAG chrX:13147222-13147302 53 5.60e-05 GACTAGTCCT GGCACGTG GTGGGTGTTA chrV:6348290-6348370 43 5.60e-05 AAAAGACACA GGCACGTG TCTTGGTGGC chrX:6739551-6739631 36 5.60e-05 ATCAATCGTC GGCACGTG TAGTTTGCAA chrIII:11040749-11040829 52 5.60e-05 cacacacaca cacacGTG TGTGGGCAAC chrX:5468013-5468093 51 5.60e-05 ACGTGCAAGT GGCACGTG CAGTCCGATA chrI:14075682-14075762 37 7.41e-05 TAAAGATGTG TCCACGTG AAGGAGAATG chrV:15774083-15774163 30 7.41e-05 ACCCTCCGAT TCCACGTG GGTGTCTGCA chrX:7129583-7129663 18 7.41e-05 CTAACACAGA CGCACGTG CCCTCCCGTT chrIII:6144598-6144678 11 8.87e-05 AATAGCGGAA AACACGTG AATACGAAAA chrIV:5089120-5089200 17 8.87e-05 GAGCAGGAGC AACACGTG GAGCTTGAGC chrX:17638586-17638666 58 8.87e-05 TGTTTAAGCA AACACGTG CAAATAGTAC chrIII:5096884-5096964 27 8.87e-05 GCAATTCATC AACACGTG GTAGATGTCG chrIV:10682341-10682421 9 8.87e-05 TTTAGACC AACACGTG TTCCACACTT chrI:1845033-1845113 33 8.87e-05 CCATGCACGC AACACGTG GCGGCGGGCA chrV:2212086-2212166 4 8.87e-05 TAA AACACGTG AAAGAACGAT chrIV:14609955-14610035 67 1.10e-04 TGGTTTTAGT GTCACGTG GTTTGT chrII:12051782-12051862 22 1.10e-04 TACGAATTTT GTCACGTG TGCCACGTCT chrIII:8733839-8733919 33 1.10e-04 CTACTTTTAT GTCACGTG GGGTCTGAAC chrX:15081627-15081707 40 1.10e-04 ATATCGCACA GTCACGTG CACCACAATC chrI:9853119-9853199 39 1.10e-04 CTTCGGTTCG AGCACGTG GGAGAAAGGA chrIV:16178558-16178638 36 1.20e-04 AGGTCGTAAA CTCACGTG TCTACCATAT chrIII:2455104-2455184 62 1.20e-04 TTTTGTAGCA CTCACGTG TGTGTGTGCT chrII:6345974-6346054 66 1.34e-04 TGGCAGAACA TACACGTG ATGAATT chrIV:7982203-7982283 38 1.34e-04 TAATCGAAAT TACACGTG TGTGGCTGGC chrII:8765288-8765368 20 1.34e-04 ATACACAACC TACACGTG GGTTTTCATT chrI:5626467-5626547 69 1.34e-04 TCTCTCTCTC TACACGTG ATAC chrIV:17174283-17174363 57 1.34e-04 AAACCGGTGG TACACGTG CGGCTGGGAA chrI:6260344-6260424 30 1.45e-04 TGGACAAATT TGCACGTG CGCTCCAGGG chrV:5032367-5032447 41 1.45e-04 GGCCAAGTAA TGCACGTG CAGAAGAGGA chrX:11738748-11738828 35 1.45e-04 cagacacaTT TGCACGTG CTTTAACTCA chrIV:8146394-8146474 7 1.59e-04 ATCTCA ATCACGTG TACTATCTCA chrI:9736402-9736482 35 1.59e-04 TTCTCATGTT ATCACGTG TCTACTGATG chrV:10723396-10723476 69 1.72e-04 CACCCGCTTC TTCACGTG ACGG chrIII:9590326-9590406 52 1.72e-04 CTAGCCATAT TTCACGTG TCACAGATTA chrIV:8463207-8463287 35 1.72e-04 GGACTATCAT TTCACGTG AATCTGACGG chrX:5645823-5645903 9 1.72e-04 TATCAGTC TTCACGTG AAATGAAGAA chrX:16324374-16324454 73 1.72e-04 CCCCTTCTTG TTCACGTG chrX:6932178-6932258 15 1.89e-04 TCACTTGGGG GCCACGCG GCTCGTGTCT chrV:10432743-10432823 16 1.89e-04 TAAGAAACTC GCAACGTG ATCAGAGTTT chrV:5712792-5712872 69 1.89e-04 TCACTTCGTC GCAACGTG ACTA chrIV:11814029-11814109 11 2.25e-04 GCAGAAACAC GCCACGAG AATGCGGGAA chrX:4498204-4498284 61 2.25e-04 CGCGAACATG GCCATGTG ATCGTAATCA chrI:10577258-10577338 37 2.25e-04 GGTTTTTGGG GCCACGAG ACAATTGTGA chrIII:7273816-7273896 56 2.25e-04 CGCATGTAAT CCAACGTG TCAGGTTTCT chrV:667578-667658 69 2.25e-04 AATACCTGCT GCCATGTG AGAA chrV:19212468-19212548 56 2.71e-04 AGAAAGAAGA ACAACGTG ATGGCCATCA chrII:9291774-9291854 7 2.71e-04 TTGACT ACAACGTG GCGTGTTTAG chrI:8351209-8351289 52 2.71e-04 GCGCACCCCG ACAACGTG ACTATTGCCA chrIII:7292713-7292793 36 2.71e-04 CAATCGGAGG ACAACGTG GAGGGAGAAA chrII:10693791-10693871 23 2.71e-04 ACGAAAGTGA ACAACGTG CAAAAAGACA chrX:4244673-4244753 29 3.33e-04 AGATTTTTGA ACCATGTG ACTTTGAATC chrI:5384210-5384290 16 3.33e-04 CTTTCTAAAA ACCATGTG ACTTTTGTGA chrV:10247167-10247247 69 3.33e-04 GCCTTTGATC GAAACGTG CACT chrI:14320487-14320567 28 4.06e-04 GGGAGTTTAA GGCACGCG CGTTCCGCAA chrII:7343051-7343131 39 4.06e-04 CCCTCGCGCG CACACGCG AATCTTTTTA chrX:4564843-4564923 39 4.06e-04 ATCAAACCTC CCCTCGTG CCGCTAATTT chrI:9598443-9598523 54 4.06e-04 CGTAAACAAC GGAACGTG CCGCGCCGTT chrIII:5623592-5623672 15 4.89e-04 CCACCGTGGT CACATGTG AATTTCGCCG chrIII:12446117-12446197 51 4.89e-04 CTGGGCGGCG CACATGTG AAAGCTTATC chrX:5344119-5344199 37 4.89e-04 TCTTCCAAAT CACACGAG GAGAGGAAGT chrII:7390497-7390577 27 4.89e-04 TCATGTTCAT CGCACGCG GCGCTCAAAT chrX:6746918-6746998 57 4.89e-04 TGTGCTGTTT CACATGTG TGCCCGTCTC chrIII:10399096-10399176 45 5.40e-04 GGCAGAGAGC ACCGCGTG TATGTCAAGC chrX:10903567-10903647 63 5.40e-04 ATGAGTCATG ACCGCGTG GCTAGCTAAA chrX:12870241-12870321 67 5.89e-04 ATTGTGGAAA AAAACGTG CGAATC chrI:3103239-3103319 32 5.89e-04 TCAGTCGACC ACCTCGTG GCACGcttct chrIII:9698721-9698801 9 5.89e-04 GAGTGCCA AACACGCG AAGAAAAAGA chrX:6729082-6729162 33 5.89e-04 AAATTTGGGC AAAACGTG AGAATAGTTA chrX:7654148-7654228 10 6.94e-04 TTTTAGAAA AGCACGCG TATTTTTGAG chrIV:4216308-4216388 2 6.94e-04 T AGCACGCG GAGATCATGG chrII:14404387-14404467 55 6.94e-04 CCAAAAGCCC AACATGTG ACACTTTTCT chrV:10715303-10715383 61 6.94e-04 GGATTCAGAA GACTCGTG ACTTCGAACA chrX:17540136-17540216 58 7.98e-04 TCACACACAC TCCGCGTG ACTACTGTTT chrX:17515341-17515421 67 7.98e-04 GTGAAACGGC GTCACGAG ACGTGT chrIV:9737305-9737385 26 7.98e-04 TAGTTTTATC AGCACGAG ACTCTTTTCA chrIV:7166726-7166806 61 7.98e-04 GCATGTGCTT AGCATGTG CCAACGAATG chrV:14212978-14213058 29 7.98e-04 CAATACGGTT GTCACGAG GTTGTTCAAA chrX:6744694-6744774 21 7.98e-04 AGGCCAGTTC TCCGCGTG GCGGTGTCAT chrIII:10632781-10632861 12 7.98e-04 agaaagcgag agcacgag agaatgagag chrX:2316311-2316391 40 8.69e-04 GGAGGAGACT CTCATGTG ACCTTTGCAA chrII:11830769-11830849 49 9.36e-04 CTTTGCATTT TACACGAG AGGGAGCGCG chrV:903646-903726 54 9.36e-04 ACTCGTGTGG TGAACGTG TTTGATCATG chrV:14510884-14510964 44 9.36e-04 AAGGGTAACA TACATGTG TGTGGAGTGT chrIII:5948551-5948631 48 1.02e-03 GGGGCAAAGA TGCATGTG ATAATATGAT chrII:12785550-12785630 44 1.02e-03 GAGACAAAAG TGCACGAG AAACAGAGAA chrX:16414744-16414824 54 1.02e-03 CGTAGAAGAC GTCGCGTG GAAATGGTGA chrIV:11016030-11016110 41 1.08e-03 ATTGGAAATT GTCTCGTG CCCTGACATG chrV:5027874-5027954 52 1.08e-03 CACTCAGCAT GTCTCGTG GACGAATGTA chrIII:9827360-9827440 50 1.10e-03 CTCTTCAGAA CTCTCGTG CTCTAATACA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif NVCACGTG MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:2659741-2659821 7.9e-06 4_[+1]_68 chrX:15497113-15497193 7.9e-06 53_[+1]_19 chrV:4820772-4820852 7.9e-06 41_[+1]_31 chrII:7944638-7944718 7.9e-06 52_[+1]_20 chrIII:6395847-6395927 7.9e-06 42_[+1]_30 chrV:19524810-19524890 7.9e-06 14_[+1]_58 chrI:8344512-8344592 1.6e-05 16_[+1]_56 chrII:12050800-12050880 1.6e-05 59_[+1]_13 chrV:8026506-8026586 1.6e-05 54_[+1]_18 chrX:4504419-4504499 1.6e-05 41_[+1]_31 chrX:4143426-4143506 1.6e-05 26_[+1]_46 chrX:7578397-7578477 1.6e-05 45_[+1]_27 chrV:5490399-5490479 1.6e-05 48_[+1]_24 chrX:1458945-1459025 1.6e-05 38_[+1]_34 chrV:8603380-8603460 1.6e-05 12_[+1]_60 chrIII:8732104-8732184 1.6e-05 43_[+1]_29 chrIV:12711216-12711296 1.6e-05 47_[+1]_25 chrX:16163556-16163636 1.6e-05 43_[+1]_29 chrIII:1682428-1682508 2.6e-05 46_[+1]_26 chrX:13748197-13748277 2.6e-05 14_[+1]_58 chrX:16290730-16290810 2.6e-05 19_[+1]_53 chrX:10231018-10231098 2.6e-05 65_[+1]_7 chrIII:8926618-8926698 2.6e-05 22_[+1]_50 chrIII:12839088-12839168 3.7e-05 43_[+1]_29 chrIV:13109902-13109982 3.7e-05 67_[+1]_5 chrII:13065427-13065507 3.7e-05 44_[+1]_28 chrX:16161099-16161179 3.7e-05 23_[+1]_49 chrIV:4471552-4471632 5.6e-05 12_[+1]_60 chrI:9401886-9401966 5.6e-05 41_[+1]_31 chrX:14740111-14740191 5.6e-05 48_[+1]_24 chrIII:8922141-8922221 5.6e-05 51_[+1]_21 chrX:12915247-12915327 5.6e-05 57_[+1]_15 chrV:10535556-10535636 5.6e-05 37_[+1]_35 chrV:11046896-11046976 5.6e-05 65_[+1]_7 chrV:20710762-20710842 5.6e-05 52_[+1]_20 chrIII:620487-620567 5.6e-05 60_[+1]_12 chrV:10160176-10160256 5.6e-05 34_[+1]_38 chrII:2962679-2962759 5.6e-05 4_[+1]_68 chrX:13147222-13147302 5.6e-05 52_[+1]_20 chrV:6348290-6348370 5.6e-05 42_[+1]_30 chrX:6739551-6739631 5.6e-05 35_[+1]_37 chrIII:11040749-11040829 5.6e-05 51_[+1]_21 chrX:5468013-5468093 5.6e-05 50_[+1]_22 chrI:14075682-14075762 7.4e-05 36_[+1]_36 chrV:15774083-15774163 7.4e-05 29_[+1]_43 chrX:7129583-7129663 7.4e-05 17_[+1]_55 chrIII:6144598-6144678 8.9e-05 10_[+1]_62 chrIV:5089120-5089200 8.9e-05 16_[+1]_56 chrX:17638586-17638666 8.9e-05 57_[+1]_15 chrIII:5096884-5096964 8.9e-05 26_[+1]_46 chrIV:10682341-10682421 8.9e-05 8_[+1]_64 chrI:1845033-1845113 8.9e-05 32_[+1]_40 chrV:2212086-2212166 8.9e-05 3_[+1]_69 chrIV:14609955-14610035 0.00011 66_[+1]_6 chrII:12051782-12051862 0.00011 21_[+1]_51 chrIII:8733839-8733919 0.00011 32_[+1]_40 chrX:15081627-15081707 0.00011 39_[+1]_33 chrI:9853119-9853199 0.00011 38_[+1]_34 chrIV:16178558-16178638 0.00012 35_[+1]_37 chrIII:2455104-2455184 0.00012 61_[+1]_11 chrII:6345974-6346054 0.00013 65_[+1]_7 chrIV:7982203-7982283 0.00013 37_[+1]_35 chrII:8765288-8765368 0.00013 19_[+1]_53 chrI:5626467-5626547 0.00013 68_[+1]_4 chrIV:17174283-17174363 0.00013 56_[+1]_16 chrI:6260344-6260424 0.00014 29_[+1]_43 chrV:5032367-5032447 0.00014 40_[+1]_32 chrX:11738748-11738828 0.00014 34_[+1]_38 chrIV:8146394-8146474 0.00016 6_[+1]_66 chrI:9736402-9736482 0.00016 34_[+1]_38 chrV:10723396-10723476 0.00017 68_[+1]_4 chrIII:9590326-9590406 0.00017 51_[+1]_21 chrIV:8463207-8463287 0.00017 34_[+1]_38 chrX:5645823-5645903 0.00017 8_[+1]_64 chrX:16324374-16324454 0.00017 72_[+1] chrX:6932178-6932258 0.00019 14_[+1]_58 chrV:10432743-10432823 0.00019 15_[+1]_57 chrV:5712792-5712872 0.00019 68_[+1]_4 chrIV:11814029-11814109 0.00022 10_[+1]_62 chrX:4498204-4498284 0.00022 60_[+1]_12 chrI:10577258-10577338 0.00022 36_[+1]_36 chrIII:7273816-7273896 0.00022 55_[+1]_17 chrV:667578-667658 0.00022 68_[+1]_4 chrV:19212468-19212548 0.00027 55_[+1]_17 chrII:9291774-9291854 0.00027 6_[+1]_66 chrI:8351209-8351289 0.00027 51_[+1]_21 chrIII:7292713-7292793 0.00027 35_[+1]_37 chrII:10693791-10693871 0.00027 22_[+1]_50 chrX:4244673-4244753 0.00033 28_[+1]_44 chrI:5384210-5384290 0.00033 15_[+1]_57 chrV:10247167-10247247 0.00033 68_[+1]_4 chrI:14320487-14320567 0.00041 27_[+1]_45 chrII:7343051-7343131 0.00041 38_[+1]_34 chrX:4564843-4564923 0.00041 38_[+1]_34 chrI:9598443-9598523 0.00041 53_[+1]_19 chrIII:5623592-5623672 0.00049 14_[+1]_58 chrIII:12446117-12446197 0.00049 50_[+1]_22 chrX:5344119-5344199 0.00049 36_[+1]_36 chrII:7390497-7390577 0.00049 26_[+1]_46 chrX:6746918-6746998 0.00049 56_[+1]_16 chrIII:10399096-10399176 0.00054 44_[+1]_28 chrX:10903567-10903647 0.00054 62_[+1]_10 chrX:12870241-12870321 0.00059 66_[+1]_6 chrI:3103239-3103319 0.00059 31_[+1]_41 chrIII:9698721-9698801 0.00059 8_[+1]_64 chrX:6729082-6729162 0.00059 32_[+1]_40 chrX:7654148-7654228 0.00069 9_[+1]_63 chrIV:4216308-4216388 0.00069 1_[+1]_71 chrII:14404387-14404467 0.00069 54_[+1]_18 chrV:10715303-10715383 0.00069 60_[+1]_12 chrX:17540136-17540216 0.0008 57_[+1]_15 chrX:17515341-17515421 0.0008 66_[+1]_6 chrIV:9737305-9737385 0.0008 25_[+1]_47 chrIV:7166726-7166806 0.0008 60_[+1]_12 chrV:14212978-14213058 0.0008 28_[+1]_44 chrX:6744694-6744774 0.0008 20_[+1]_52 chrIII:10632781-10632861 0.0008 11_[+1]_61 chrX:2316311-2316391 0.00087 39_[+1]_33 chrII:11830769-11830849 0.00094 48_[+1]_24 chrV:903646-903726 0.00094 53_[+1]_19 chrV:14510884-14510964 0.00094 43_[+1]_29 chrIII:5948551-5948631 0.001 47_[+1]_25 chrII:12785550-12785630 0.001 43_[+1]_29 chrX:16414744-16414824 0.001 53_[+1]_19 chrIV:11016030-11016110 0.0011 40_[+1]_32 chrV:5027874-5027954 0.0011 51_[+1]_21 chrIII:9827360-9827440 0.0011 49_[+1]_23 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif NVCACGTG MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF NVCACGTG width=8 seqs=127 chrI:2659741-2659821 ( 5) GCCACGTG 1 chrX:15497113-15497193 ( 54) GCCACGTG 1 chrV:4820772-4820852 ( 42) GCCACGTG 1 chrII:7944638-7944718 ( 53) GCCACGTG 1 chrIII:6395847-6395927 ( 43) GCCACGTG 1 chrV:19524810-19524890 ( 15) GCCACGTG 1 chrI:8344512-8344592 ( 17) CCCACGTG 1 chrII:12050800-12050880 ( 60) CCCACGTG 1 chrV:8026506-8026586 ( 55) CCCACGTG 1 chrX:4504419-4504499 ( 42) CCCACGTG 1 chrX:4143426-4143506 ( 27) CCCACGTG 1 chrX:7578397-7578477 ( 46) CCCACGTG 1 chrV:5490399-5490479 ( 49) CCCACGTG 1 chrX:1458945-1459025 ( 39) CCCACGTG 1 chrV:8603380-8603460 ( 13) CCCACGTG 1 chrIII:8732104-8732184 ( 44) CCCACGTG 1 chrIV:12711216-12711296 ( 48) CCCACGTG 1 chrX:16163556-16163636 ( 44) CCCACGTG 1 chrIII:1682428-1682508 ( 47) ACCACGTG 1 chrX:13748197-13748277 ( 15) ACCACGTG 1 chrX:16290730-16290810 ( 20) ACCACGTG 1 chrX:10231018-10231098 ( 66) ACCACGTG 1 chrIII:8926618-8926698 ( 23) ACCACGTG 1 chrIII:12839088-12839168 ( 44) GACACGTG 1 chrIV:13109902-13109982 ( 68) GACACGTG 1 chrII:13065427-13065507 ( 45) GACACGTG 1 chrX:16161099-16161179 ( 24) GACACGTG 1 chrIV:4471552-4471632 ( 13) GGCACGTG 1 chrI:9401886-9401966 ( 42) GGCACGTG 1 chrX:14740111-14740191 ( 49) CACACGTG 1 chrIII:8922141-8922221 ( 52) CACACGTG 1 chrX:12915247-12915327 ( 58) CACACGTG 1 chrV:10535556-10535636 ( 38) CACACGTG 1 chrV:11046896-11046976 ( 66) CACACGTG 1 chrV:20710762-20710842 ( 53) CACACGTG 1 chrIII:620487-620567 ( 61) GGCACGTG 1 chrV:10160176-10160256 ( 35) GGCACGTG 1 chrII:2962679-2962759 ( 5) GGCACGTG 1 chrX:13147222-13147302 ( 53) GGCACGTG 1 chrV:6348290-6348370 ( 43) GGCACGTG 1 chrX:6739551-6739631 ( 36) GGCACGTG 1 chrIII:11040749-11040829 ( 52) CACACGTG 1 chrX:5468013-5468093 ( 51) GGCACGTG 1 chrI:14075682-14075762 ( 37) TCCACGTG 1 chrV:15774083-15774163 ( 30) TCCACGTG 1 chrX:7129583-7129663 ( 18) CGCACGTG 1 chrIII:6144598-6144678 ( 11) AACACGTG 1 chrIV:5089120-5089200 ( 17) AACACGTG 1 chrX:17638586-17638666 ( 58) AACACGTG 1 chrIII:5096884-5096964 ( 27) AACACGTG 1 chrIV:10682341-10682421 ( 9) AACACGTG 1 chrI:1845033-1845113 ( 33) AACACGTG 1 chrV:2212086-2212166 ( 4) AACACGTG 1 chrIV:14609955-14610035 ( 67) GTCACGTG 1 chrII:12051782-12051862 ( 22) GTCACGTG 1 chrIII:8733839-8733919 ( 33) GTCACGTG 1 chrX:15081627-15081707 ( 40) GTCACGTG 1 chrI:9853119-9853199 ( 39) AGCACGTG 1 chrIV:16178558-16178638 ( 36) CTCACGTG 1 chrIII:2455104-2455184 ( 62) CTCACGTG 1 chrII:6345974-6346054 ( 66) TACACGTG 1 chrIV:7982203-7982283 ( 38) TACACGTG 1 chrII:8765288-8765368 ( 20) TACACGTG 1 chrI:5626467-5626547 ( 69) TACACGTG 1 chrIV:17174283-17174363 ( 57) TACACGTG 1 chrI:6260344-6260424 ( 30) TGCACGTG 1 chrV:5032367-5032447 ( 41) TGCACGTG 1 chrX:11738748-11738828 ( 35) TGCACGTG 1 chrIV:8146394-8146474 ( 7) ATCACGTG 1 chrI:9736402-9736482 ( 35) ATCACGTG 1 chrV:10723396-10723476 ( 69) TTCACGTG 1 chrIII:9590326-9590406 ( 52) TTCACGTG 1 chrIV:8463207-8463287 ( 35) TTCACGTG 1 chrX:5645823-5645903 ( 9) TTCACGTG 1 chrX:16324374-16324454 ( 73) TTCACGTG 1 chrX:6932178-6932258 ( 15) GCCACGCG 1 chrV:10432743-10432823 ( 16) GCAACGTG 1 chrV:5712792-5712872 ( 69) GCAACGTG 1 chrIV:11814029-11814109 ( 11) GCCACGAG 1 chrX:4498204-4498284 ( 61) GCCATGTG 1 chrI:10577258-10577338 ( 37) GCCACGAG 1 chrIII:7273816-7273896 ( 56) CCAACGTG 1 chrV:667578-667658 ( 69) GCCATGTG 1 chrV:19212468-19212548 ( 56) ACAACGTG 1 chrII:9291774-9291854 ( 7) ACAACGTG 1 chrI:8351209-8351289 ( 52) ACAACGTG 1 chrIII:7292713-7292793 ( 36) ACAACGTG 1 chrII:10693791-10693871 ( 23) ACAACGTG 1 chrX:4244673-4244753 ( 29) ACCATGTG 1 chrI:5384210-5384290 ( 16) ACCATGTG 1 chrV:10247167-10247247 ( 69) GAAACGTG 1 chrI:14320487-14320567 ( 28) GGCACGCG 1 chrII:7343051-7343131 ( 39) CACACGCG 1 chrX:4564843-4564923 ( 39) CCCTCGTG 1 chrI:9598443-9598523 ( 54) GGAACGTG 1 chrIII:5623592-5623672 ( 15) CACATGTG 1 chrIII:12446117-12446197 ( 51) CACATGTG 1 chrX:5344119-5344199 ( 37) CACACGAG 1 chrII:7390497-7390577 ( 27) CGCACGCG 1 chrX:6746918-6746998 ( 57) CACATGTG 1 chrIII:10399096-10399176 ( 45) ACCGCGTG 1 chrX:10903567-10903647 ( 63) ACCGCGTG 1 chrX:12870241-12870321 ( 67) AAAACGTG 1 chrI:3103239-3103319 ( 32) ACCTCGTG 1 chrIII:9698721-9698801 ( 9) AACACGCG 1 chrX:6729082-6729162 ( 33) AAAACGTG 1 chrX:7654148-7654228 ( 10) AGCACGCG 1 chrIV:4216308-4216388 ( 2) AGCACGCG 1 chrII:14404387-14404467 ( 55) AACATGTG 1 chrV:10715303-10715383 ( 61) GACTCGTG 1 chrX:17540136-17540216 ( 58) TCCGCGTG 1 chrX:17515341-17515421 ( 67) GTCACGAG 1 chrIV:9737305-9737385 ( 26) AGCACGAG 1 chrIV:7166726-7166806 ( 61) AGCATGTG 1 chrV:14212978-14213058 ( 29) GTCACGAG 1 chrX:6744694-6744774 ( 21) TCCGCGTG 1 chrIII:10632781-10632861 ( 12) AGCACGAG 1 chrX:2316311-2316391 ( 40) CTCATGTG 1 chrII:11830769-11830849 ( 49) TACACGAG 1 chrV:903646-903726 ( 54) TGAACGTG 1 chrV:14510884-14510964 ( 44) TACATGTG 1 chrIII:5948551-5948631 ( 48) TGCATGTG 1 chrII:12785550-12785630 ( 44) TGCACGAG 1 chrX:16414744-16414824 ( 54) GTCGCGTG 1 chrIV:11016030-11016110 ( 41) GTCTCGTG 1 chrV:5027874-5027954 ( 52) GTCTCGTG 1 chrIII:9827360-9827440 ( 50) CTCTCGTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif NVCACGTG MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.89709 E= 5.6e-071 -12 25 50 -69 -4 77 -14 -83 -151 208 -1363 -1363 165 -1363 -246 -256 -1363 209 -1363 -157 -1363 -1363 220 -1363 -204 -194 -1363 164 -1363 -1363 220 -1363 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif NVCACGTG MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 127 E= 5.6e-071 0.267717 0.251969 0.307087 0.173228 0.283465 0.362205 0.196850 0.157480 0.102362 0.897638 0.000000 0.000000 0.913386 0.000000 0.039370 0.047244 0.000000 0.905512 0.000000 0.094488 0.000000 0.000000 1.000000 0.000000 0.070866 0.055118 0.000000 0.874016 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif NVCACGTG MEME-1 regular expression -------------------------------------------------------------------------------- [GAC][CA]CACGTG -------------------------------------------------------------------------------- Time 5.48 secs. ******************************************************************************** ******************************************************************************** MOTIF TYTYTYTC MEME-2 width = 8 sites = 52 llr = 403 E-value = 1.9e-005 ******************************************************************************** -------------------------------------------------------------------------------- Motif TYTYTYTC MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C :3:6:6:6 probability G :::::::2 matrix T a7a4a4a2 bits 2.2 2.0 1.8 * * * 1.6 * * * * Relative 1.3 * * * * Entropy 1.1 ******* (11.2 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TTTCTCTC consensus C T T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TYTYTYTC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrII:8650829-8650909 11 1.64e-05 TCTTTGTCCA TTTCTCTC TGGTATTTCT chrII:2804443-2804523 23 1.64e-05 TTTCCTCTCT TTTCTCTC TATTGAGGGA chrIII:4968330-4968410 33 1.64e-05 AGACGTAGTA TTTCTCTC TAGAAAAGAG chrIV:4211006-4211086 5 1.64e-05 TCTC TTTCTCTC ACTGCGCCAT chrI:4333898-4333978 67 1.64e-05 CTGTTATCTC TTTCTCTC TTTTTT chrIII:3952240-3952320 32 1.64e-05 CGTTTCTCGC TTTCTCTC TTCGTAAGAT chrIII:5472913-5472993 15 2.88e-05 TTTTTTTGTA TCTCTCTC TGGCGCCGTA chrI:5540810-5540890 8 2.88e-05 cttcctc tctctctc ATTTTCTACA chrX:15497113-15497193 24 2.88e-05 cgacctctgc tctctctc actgttcctc chrX:16414744-16414824 8 2.88e-05 CTATCTC TCTCTCTC CCTGTGTTCT chrI:5626467-5626547 59 2.88e-05 TGCGTCTTCC TCTCTCTC TCTACACGTG chrI:2125272-2125352 30 2.88e-05 ccattctctc tctctctc tcATGCTTTT chrI:2659741-2659821 46 7.21e-05 TTCTCTTTTT TTTCTTTC TGTGTGTTTT chrI:3103239-3103319 55 7.21e-05 cttctcttct tttctttc tattctcgtc chrIII:3637355-3637435 31 7.21e-05 TTTTGTCTTT TTTTTCTC GTTTCCGCAT chrV:5712792-5712872 18 7.21e-05 AATTCTCTGT TTTCTTTC ATTATCAACA chrV:20710762-20710842 70 7.21e-05 GACTCCTATT TTTTTCTC ATT chrV:14510884-14510964 10 7.21e-05 ATTTTCCCT TTTTTCTC ATCAATCACA chrX:7129583-7129663 57 7.21e-05 CTCCGCTTAT TTTCTTTC CCGGCCTTGT chrX:6746918-6746998 38 7.21e-05 CCTTTGTCAT TTTTTCTC GTGTGCTGTT chrX:6932178-6932258 30 1.05e-04 GCGGCTCGTG TCTTTCTC CTCTTCTCCT chrX:348304-348384 54 1.05e-04 CTTACTGCAC TCTCTTTC AGTGTCATAT chrIV:132197-132277 73 1.05e-04 GCTTGGCTCT TCTCTTTC chrV:6213355-6213435 35 1.34e-04 GTGTGTTCTC TTTTTTTC CCCATAAGAT chrX:12915247-12915327 68 1.34e-04 CACACGTGTT TTTTTTTC AGTCG chrIV:5605451-5605531 61 1.34e-04 AACATGGATT TTTTTTTC GAAGGAATGA chrV:14948692-14948772 5 1.34e-04 CGTT TTTTTTTC CTCGCTCTCC chrX:11738748-11738828 72 1.34e-04 CTGACCTGCG TTTTTTTC T chrII:9606807-9606887 9 1.34e-04 TTGCAATC TTTTTTTC GTTTGTTGTT chrX:10903567-10903647 30 1.34e-04 AGGGGAATTC TTTTTTTC TTATTTCATT chrIII:5623592-5623672 58 1.72e-04 TTCCCCCTTT TCTTTTTC GGCTTTTGCT chrIII:9391114-9391194 6 2.06e-04 CTCCA TCTCTCTG CGTCTCTTTA chrII:13196868-13196948 63 2.06e-04 AATTCCATGC TCTCTCTG ACTCAATATT chrIV:7258395-7258475 5 2.06e-04 TCTA TTTCTCTT AAAAAGAAAG chrX:6747118-6747198 10 2.06e-04 GTATCGGCC TCTCTCTG CTAGTAAAAA chrX:14500025-14500105 23 2.51e-04 ATCATTAACT TTTTTCTG AACACTCACT chrX:6121930-6122010 16 2.51e-04 TTTTTCCGAC TTTTTCTG TGAGTCGAAA chrIV:10007878-10007958 49 2.51e-04 ATTCGTACAG TTTCTTTG GTTGTCTACC chrIII:9827360-9827440 37 2.67e-04 GTGTGTCTGC TCTCTCTT CAGAACTCTC chrX:4143426-4143506 14 2.67e-04 TCCTTCTCCT TCTCTCTT CTACACCCAC chrIV:8366424-8366504 58 3.58e-04 AGGGGAGGAT TTTTTCTT ATTCTGTTAT chrII:12051782-12051862 5 3.58e-04 GACA TTTCTTTT ACGAATTTTG chrIV:8464354-8464434 15 3.58e-04 TTAGTTAACT TTTCTTTT TTTGATTTAT chrI:10766730-10766810 60 3.58e-04 CGAATGCACT TTTTTCTT CTTCATTCGT chrX:16130313-16130393 22 3.87e-04 TTGTTGACTA TTTTTTTG TATCAATTCT chrV:12637974-12638054 36 3.87e-04 CTATCTCTAG TTTTTTTG CAGATGACAT chrI:8351209-8351289 70 3.87e-04 ACTATTGCCA TTTTTTTG GAG chrX:14145828-14145908 71 3.87e-04 GACCGCATGC TTTTTTTG CT chrV:9085899-9085979 43 5.31e-04 TGTCATGCGT TCTTTTTT AGGTCGACTA chrV:4820772-4820852 70 5.31e-04 CTATCTATCT CTTCTCTC AGT chrIV:3258656-3258736 61 5.31e-04 CAGAGTCTAT TCTTTTTT GATCATGCAT chrV:10247167-10247247 5 5.41e-04 GTTC CCTCTCTC CGTCCGGCGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TYTYTYTC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:8650829-8650909 1.6e-05 10_[+2]_62 chrII:2804443-2804523 1.6e-05 22_[+2]_50 chrIII:4968330-4968410 1.6e-05 32_[+2]_40 chrIV:4211006-4211086 1.6e-05 4_[+2]_68 chrI:4333898-4333978 1.6e-05 66_[+2]_6 chrIII:3952240-3952320 1.6e-05 31_[+2]_41 chrIII:5472913-5472993 2.9e-05 14_[+2]_58 chrI:5540810-5540890 2.9e-05 7_[+2]_65 chrX:15497113-15497193 2.9e-05 23_[+2]_49 chrX:16414744-16414824 2.9e-05 7_[+2]_65 chrI:5626467-5626547 2.9e-05 58_[+2]_14 chrI:2125272-2125352 2.9e-05 29_[+2]_43 chrI:2659741-2659821 7.2e-05 45_[+2]_27 chrI:3103239-3103319 7.2e-05 54_[+2]_18 chrIII:3637355-3637435 7.2e-05 30_[+2]_42 chrV:5712792-5712872 7.2e-05 17_[+2]_55 chrV:20710762-20710842 7.2e-05 69_[+2]_3 chrV:14510884-14510964 7.2e-05 9_[+2]_63 chrX:7129583-7129663 7.2e-05 56_[+2]_16 chrX:6746918-6746998 7.2e-05 37_[+2]_35 chrX:6932178-6932258 0.0001 29_[+2]_43 chrX:348304-348384 0.0001 53_[+2]_19 chrIV:132197-132277 0.0001 72_[+2] chrV:6213355-6213435 0.00013 34_[+2]_38 chrX:12915247-12915327 0.00013 67_[+2]_5 chrIV:5605451-5605531 0.00013 60_[+2]_12 chrV:14948692-14948772 0.00013 4_[+2]_68 chrX:11738748-11738828 0.00013 71_[+2]_1 chrII:9606807-9606887 0.00013 8_[+2]_64 chrX:10903567-10903647 0.00013 29_[+2]_43 chrIII:5623592-5623672 0.00017 57_[+2]_15 chrIII:9391114-9391194 0.00021 5_[+2]_67 chrII:13196868-13196948 0.00021 62_[+2]_10 chrIV:7258395-7258475 0.00021 4_[+2]_68 chrX:6747118-6747198 0.00021 9_[+2]_63 chrX:14500025-14500105 0.00025 22_[+2]_50 chrX:6121930-6122010 0.00025 15_[+2]_57 chrIV:10007878-10007958 0.00025 48_[+2]_24 chrIII:9827360-9827440 0.00027 36_[+2]_36 chrX:4143426-4143506 0.00027 13_[+2]_59 chrIV:8366424-8366504 0.00036 57_[+2]_15 chrII:12051782-12051862 0.00036 4_[+2]_68 chrIV:8464354-8464434 0.00036 14_[+2]_58 chrI:10766730-10766810 0.00036 59_[+2]_13 chrX:16130313-16130393 0.00039 21_[+2]_51 chrV:12637974-12638054 0.00039 35_[+2]_37 chrI:8351209-8351289 0.00039 69_[+2]_3 chrX:14145828-14145908 0.00039 70_[+2]_2 chrV:9085899-9085979 0.00053 42_[+2]_30 chrV:4820772-4820852 0.00053 69_[+2]_3 chrIV:3258656-3258736 0.00053 60_[+2]_12 chrV:10247167-10247247 0.00054 4_[+2]_68 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TYTYTYTC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TYTYTYTC width=8 seqs=52 chrII:8650829-8650909 ( 11) TTTCTCTC 1 chrII:2804443-2804523 ( 23) TTTCTCTC 1 chrIII:4968330-4968410 ( 33) TTTCTCTC 1 chrIV:4211006-4211086 ( 5) TTTCTCTC 1 chrI:4333898-4333978 ( 67) TTTCTCTC 1 chrIII:3952240-3952320 ( 32) TTTCTCTC 1 chrIII:5472913-5472993 ( 15) TCTCTCTC 1 chrI:5540810-5540890 ( 8) TCTCTCTC 1 chrX:15497113-15497193 ( 24) TCTCTCTC 1 chrX:16414744-16414824 ( 8) TCTCTCTC 1 chrI:5626467-5626547 ( 59) TCTCTCTC 1 chrI:2125272-2125352 ( 30) TCTCTCTC 1 chrI:2659741-2659821 ( 46) TTTCTTTC 1 chrI:3103239-3103319 ( 55) TTTCTTTC 1 chrIII:3637355-3637435 ( 31) TTTTTCTC 1 chrV:5712792-5712872 ( 18) TTTCTTTC 1 chrV:20710762-20710842 ( 70) TTTTTCTC 1 chrV:14510884-14510964 ( 10) TTTTTCTC 1 chrX:7129583-7129663 ( 57) TTTCTTTC 1 chrX:6746918-6746998 ( 38) TTTTTCTC 1 chrX:6932178-6932258 ( 30) TCTTTCTC 1 chrX:348304-348384 ( 54) TCTCTTTC 1 chrIV:132197-132277 ( 73) TCTCTTTC 1 chrV:6213355-6213435 ( 35) TTTTTTTC 1 chrX:12915247-12915327 ( 68) TTTTTTTC 1 chrIV:5605451-5605531 ( 61) TTTTTTTC 1 chrV:14948692-14948772 ( 5) TTTTTTTC 1 chrX:11738748-11738828 ( 72) TTTTTTTC 1 chrII:9606807-9606887 ( 9) TTTTTTTC 1 chrX:10903567-10903647 ( 30) TTTTTTTC 1 chrIII:5623592-5623672 ( 58) TCTTTTTC 1 chrIII:9391114-9391194 ( 6) TCTCTCTG 1 chrII:13196868-13196948 ( 63) TCTCTCTG 1 chrIV:7258395-7258475 ( 5) TTTCTCTT 1 chrX:6747118-6747198 ( 10) TCTCTCTG 1 chrX:14500025-14500105 ( 23) TTTTTCTG 1 chrX:6121930-6122010 ( 16) TTTTTCTG 1 chrIV:10007878-10007958 ( 49) TTTCTTTG 1 chrIII:9827360-9827440 ( 37) TCTCTCTT 1 chrX:4143426-4143506 ( 14) TCTCTCTT 1 chrIV:8366424-8366504 ( 58) TTTTTCTT 1 chrII:12051782-12051862 ( 5) TTTCTTTT 1 chrIV:8464354-8464434 ( 15) TTTCTTTT 1 chrI:10766730-10766810 ( 60) TTTTTCTT 1 chrX:16130313-16130393 ( 22) TTTTTTTG 1 chrV:12637974-12638054 ( 36) TTTTTTTG 1 chrI:8351209-8351289 ( 70) TTTTTTTG 1 chrX:14145828-14145908 ( 71) TTTTTTTG 1 chrV:9085899-9085979 ( 43) TCTTTTTT 1 chrV:4820772-4820852 ( 70) CTTCTCTC 1 chrIV:3258656-3258736 ( 61) TCTTTTTT 1 chrV:10247167-10247247 ( 5) CCTCTCTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TYTYTYTC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.389 E= 1.9e-005 -1234 -246 -1234 178 -1234 71 -1234 123 -1234 -1234 -1234 184 -1234 139 -1234 66 -1234 -1234 -1234 184 -1234 139 -1234 66 -1234 -1234 -1234 184 -1234 158 -17 -69 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TYTYTYTC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 52 E= 1.9e-005 0.000000 0.038462 0.000000 0.961538 0.000000 0.346154 0.000000 0.653846 0.000000 0.000000 0.000000 1.000000 0.000000 0.557692 0.000000 0.442308 0.000000 0.000000 0.000000 1.000000 0.000000 0.557692 0.000000 0.442308 0.000000 0.000000 0.000000 1.000000 0.000000 0.634615 0.192308 0.173077 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TYTYTYTC MEME-2 regular expression -------------------------------------------------------------------------------- T[TC]T[CT]T[CT]TC -------------------------------------------------------------------------------- Time 10.18 secs. ******************************************************************************** ******************************************************************************** MOTIF TGCGTCTC MEME-3 width = 8 sites = 18 llr = 174 E-value = 1.8e-002 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGCGTCTC MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C 319::a2a probability G :919:::: matrix T 7::1a:8: bits 2.2 * * 2.0 * * * 1.8 ** ** * 1.6 ***** * Relative 1.3 ******* Entropy 1.1 ******** (14.0 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TGCGTCTC consensus C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCGTCTC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrV:7225116-7225196 4 9.85e-06 ATC TGCGTCTC TCAGGCTTCG chrII:7413425-7413505 42 9.85e-06 GCAACCTCTC TGCGTCTC GCCTTAAGGA chrV:10723396-10723476 47 9.85e-06 CGGACACTCG TGCGTCTC TCACCACCCG chrX:348304-348384 3 9.85e-06 GC TGCGTCTC CAGCCTTTCA chrIV:7166726-7166806 35 9.85e-06 TCGAAATGCC TGCGTCTC ATTCTCTTGC chrIV:132197-132277 54 9.85e-06 GCTCACCGTC TGCGTCTC TGCTTGGCTC chrIV:7258395-7258475 66 9.85e-06 CTTTGTTGTC TGCGTCTC ACTTTCT chrII:2962679-2962759 47 9.85e-06 CTAGGCCGTC TGCGTCTC CGGTGTCGTC chrV:10020103-10020183 29 9.85e-06 CTTAGATGTC TGCGTCTC TAAGTTGTCT chrV:13839544-13839624 14 1.73e-05 CTCTACTTTT CGCGTCTC TGCTCTCTTC chrX:17631828-17631908 22 2.48e-05 TCGATGTGTC TGCGTCCC TGCACCCGCT chrIV:10007878-10007958 31 2.48e-05 TGTTTGTCCA TGCGTCCC ATTCGTACAG chrX:17421526-17421606 43 4.00e-05 GCGCGGGGCG CGCGTCCC GCCCCCTAGG chrV:5712792-5712872 44 4.00e-05 CATTTGATCG TCCGTCTC TTTTTTATCA chrII:8650829-8650909 38 5.27e-05 TCGAATTCTC TGCTTCTC TGCGCATATA chrX:6746918-6746998 67 6.00e-05 CACATGTGTG CCCGTCTC TGATTG chrI:9736402-9736482 22 7.97e-05 ATGATCACCC CGCTTCTC ATGTTATCAC chrIV:7982203-7982283 8 9.46e-05 TGGCTGA CGGGTCTC GCCACGATCG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCGTCTC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:7225116-7225196 9.8e-06 3_[+3]_69 chrII:7413425-7413505 9.8e-06 41_[+3]_31 chrV:10723396-10723476 9.8e-06 46_[+3]_26 chrX:348304-348384 9.8e-06 2_[+3]_70 chrIV:7166726-7166806 9.8e-06 34_[+3]_38 chrIV:132197-132277 9.8e-06 53_[+3]_19 chrIV:7258395-7258475 9.8e-06 65_[+3]_7 chrII:2962679-2962759 9.8e-06 46_[+3]_26 chrV:10020103-10020183 9.8e-06 28_[+3]_44 chrV:13839544-13839624 1.7e-05 13_[+3]_59 chrX:17631828-17631908 2.5e-05 21_[+3]_51 chrIV:10007878-10007958 2.5e-05 30_[+3]_42 chrX:17421526-17421606 4e-05 42_[+3]_30 chrV:5712792-5712872 4e-05 43_[+3]_29 chrII:8650829-8650909 5.3e-05 37_[+3]_35 chrX:6746918-6746998 6e-05 66_[+3]_6 chrI:9736402-9736482 8e-05 21_[+3]_51 chrIV:7982203-7982283 9.5e-05 7_[+3]_65 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCGTCTC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGCGTCTC width=8 seqs=18 chrV:7225116-7225196 ( 4) TGCGTCTC 1 chrII:7413425-7413505 ( 42) TGCGTCTC 1 chrV:10723396-10723476 ( 47) TGCGTCTC 1 chrX:348304-348384 ( 3) TGCGTCTC 1 chrIV:7166726-7166806 ( 35) TGCGTCTC 1 chrIV:132197-132277 ( 54) TGCGTCTC 1 chrIV:7258395-7258475 ( 66) TGCGTCTC 1 chrII:2962679-2962759 ( 47) TGCGTCTC 1 chrV:10020103-10020183 ( 29) TGCGTCTC 1 chrV:13839544-13839624 ( 14) CGCGTCTC 1 chrX:17631828-17631908 ( 22) TGCGTCCC 1 chrIV:10007878-10007958 ( 31) TGCGTCCC 1 chrX:17421526-17421606 ( 43) CGCGTCCC 1 chrV:5712792-5712872 ( 44) TCCGTCTC 1 chrII:8650829-8650909 ( 38) TGCTTCTC 1 chrX:6746918-6746998 ( 67) CCCGTCTC 1 chrI:9736402-9736482 ( 22) CGCTTCTC 1 chrIV:7982203-7982283 ( 8) CGGGTCTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCGTCTC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.1187 E= 1.8e-002 -1081 39 -1081 137 -1081 -93 203 -1081 -1081 215 -196 -1081 -1081 -1081 203 -133 -1081 -1081 -1081 184 -1081 224 -1081 -1081 -1081 -35 -1081 157 -1081 224 -1081 -1081 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCGTCTC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 18 E= 1.8e-002 0.000000 0.277778 0.000000 0.722222 0.000000 0.111111 0.888889 0.000000 0.000000 0.944444 0.055556 0.000000 0.000000 0.000000 0.888889 0.111111 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.166667 0.000000 0.833333 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCGTCTC MEME-3 regular expression -------------------------------------------------------------------------------- [TC]GCGTCTC -------------------------------------------------------------------------------- Time 14.71 secs. ******************************************************************************** ******************************************************************************** MOTIF AGAGAAAR MEME-4 width = 8 sites = 84 llr = 563 E-value = 6.1e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif AGAGAAAR MEME-4 Description -------------------------------------------------------------------------------- Simplified A 839398a4 pos.-specific C :::::::: probability G 27:712:5 matrix T ::1::::1 bits 2.2 2.0 1.8 * 1.6 * Relative 1.3 ** * * Entropy 1.1 ******* (9.7 bits) 0.9 ******* 0.7 ******* 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AGAGAAAG consensus GA A A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAGAAAR MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrV:11885226-11885306 47 2.13e-05 GAAATTGTGA AGAGAAAG AAAGAAAACG chrII:12050800-12050880 27 2.13e-05 CGAAAATAGA AGAGAAAG AGAGAAGCCA chrX:17058460-17058540 70 2.13e-05 gaggggaggg agagaaag gcg chrX:17504639-17504719 55 2.13e-05 AGCAGGGAGC AGAGAAAG ATGGCGAAAA chrV:12637974-12638054 59 4.99e-05 GACATGTATA AGAGAAAA ATCAGTGCAG chrII:5020809-5020889 18 4.99e-05 CGAGAAAATA AGAGAAAA AGGACCAACA chrIV:13109902-13109982 59 4.99e-05 GGTGATTGAG AGAGAAAA AGACACGTGA chrX:11724019-11724099 48 4.99e-05 TGCGAGGTTT AGAGAAAA TGGAAAACCC chrIII:2455104-2455184 14 4.99e-05 TGAGAGATTT AGAGAAAA ATACGAAGGA chrII:13640374-13640454 52 4.99e-05 agagagatag agagaAAA ACAAAAGACG chrV:19212468-19212548 44 6.58e-05 CTACAGATAA GGAGAAAG AAGAACAACG chrV:5027874-5027954 71 6.58e-05 ACGAATGTAT GGAGAAAG TT chrI:9853119-9853199 47 6.58e-05 CGAGCACGTG GGAGAAAG GAAGAATCAG chrI:10766730-10766810 13 6.58e-05 GGCGTCAGAA GGAGAAAG TAAATGGAAC chrIV:11814029-11814109 47 9.44e-05 GTTAAGGGGA AGAAAAAG CCGCCGAACC chrIII:9698721-9698801 18 9.44e-05 AAACACGCGA AGAAAAAG ATGTTCTCGT chrIV:4471552-4471632 39 1.10e-04 CCCGGCGCCC AGAGAGAG GAGGAAAAAA chrI:7116814-7116894 51 1.10e-04 CTTGACAGTG AGAGAGAG ACATAGAGAT chrIII:4968330-4968410 47 1.10e-04 TCTCTAGAAA AGAGAGAG CTCTCTTTCA chrV:5032367-5032447 1 1.10e-04 . AGAGAGAG TGCCAGAGAT chrIII:10636782-10636862 21 1.10e-04 AAGCAAACAG AGAGAGAG AGTTTGTGCT chrIII:10632781-10632861 38 1.10e-04 agaatgagag agagagag CGTGGAAAAG chrX:8869401-8869481 31 1.39e-04 AAGAGGGGAA AAAGAAAG AAGGAGATGT chrIV:7258395-7258475 15 1.39e-04 TTTCTCTTAA AAAGAAAG TGATTATCGC chrII:5142271-5142351 55 1.39e-04 AATAGTGGAA AAAGAAAG AAACAGTTTG chrIII:12843014-12843094 73 1.88e-04 AATAGGCCGC AGAGAAAT chrI:10577258-10577338 62 1.88e-04 TGAATAGATG AGAGAAAT GATAGAGGGA chrII:2804443-2804523 38 1.88e-04 CTCTATTGAG GGAGAAAA CTAAAAAAAA chrII:12785550-12785630 56 1.88e-04 CACGAGAAAC AGAGAAAT GTGTTCATAT chrIII:7292713-7292793 47 1.88e-04 CAACGTGGAG GGAGAAAA GAAGAAAGGG chrII:12053650-12053730 57 1.88e-04 CAGAGAAACA AGAGAAAT CGGCAGCGTG chrX:6729744-6729824 32 1.88e-04 AGAGGTGGAA AGAGAAAT GTAAATGCGC chrIII:6144598-6144678 61 2.26e-04 TGCTGATGAC AGAAAAAA CGAAGAAAAG chrII:12064790-12064870 20 2.26e-04 TGCACTGAAA AGAAAAAA AAGACCAATG chrIV:8366424-8366504 40 2.26e-04 GATTCTGATA AGAAAAAA AGGGGAGGAT chrX:2319782-2319862 40 2.26e-04 AGCATAAAAT AGAAAAAA GCACGTTGTT chrIV:4212790-4212870 26 2.47e-04 acacaTGGTG AGAGAGAA ATGAAAGGAA chrV:3388500-3388580 5 2.47e-04 AAAA AGAGAGAA CAGCGGGGAA chrIII:9666844-9666924 61 2.86e-04 agaagaaaca aaagaaaa tgagagagat chrI:5626467-5626547 16 2.86e-04 TTCTACGTCT AAAGAAAA GGCGAAACAA chrIV:8234314-8234394 13 2.86e-04 CAGGCGCACG AAAGAAAA ACCGCAAAAA chrX:5344119-5344199 46 3.02e-04 TCACACGAGG AGAGGAAG TACGCATAGA chrIII:13101260-13101340 51 3.23e-04 AAAGTGAAAT GGAAAAAG GGAAACGGTC chrIV:9516947-9517027 33 3.23e-04 ATAAGATATG GGAAAAAG CGAAAAAATG chrIII:8922141-8922221 3 3.23e-04 GA GGAAAAAG TGTAAAACGC chrV:13336009-13336089 67 3.23e-04 AGACGCAGAA GGAAAAAG GAGAAT chrI:14320487-14320567 67 3.56e-04 ACGGCGCGGC Ggagagag ggagag chrV:5687752-5687832 69 3.56e-04 ATCTTTCTAC AGAGGAAA CGGG chrV:10715303-10715383 3 3.56e-04 GA AGAGGAAA ATCGAATGAC chrX:3102372-3102452 72 4.19e-04 TGAAGATAAG AGTGAAAG T chrX:5339458-5339538 11 4.19e-04 CTCTACGGAA AGTGAAAG CTAGAACCGC chrIII:8986118-8986198 61 4.78e-04 GGAAGGTGCG AAAAAAAG AAGAAATTGA chrX:4139935-4140015 3 4.78e-04 CA AAAAAAAG TTGTGAACAA chrV:11739962-11740042 71 4.78e-04 TATCGCTTCA AAAAAAAG AA chrII:9620308-9620388 65 4.78e-04 ACGACGACCT GGAGAAAT GCGTGGTA chrV:14212978-14213058 68 4.78e-04 GCAGAAAAGA GGAGAAAT GACTG chrX:15622203-15622283 38 4.78e-04 TCACTTTAAC AAAAAAAG CGATTAGAAA chrIII:8732104-8732184 73 4.78e-04 TGATTTGTGT AAAAAAAG chrX:2116646-2116726 14 5.65e-04 CGCCGTCTTG AAAGAGAG CAAGTTTTCG chrII:11830769-11830849 71 6.01e-04 AGCGCGTGTC AGAGAGAT AG chrV:16354823-16354903 48 7.23e-04 ATGTTTTGTC AGTGAAAA GACCACCTCC chrX:16290730-16290810 4 7.23e-04 ACG AGTGAAAA ACTTTGAAAC chrX:10231018-10231098 17 7.23e-04 AGTGTCCGAA AGTGAAAA CCGTGTCTCT chrX:17638586-17638666 26 7.23e-04 ACCAATCTAT AAAGAAAT GGTGTGTTCC chrIII:8733839-8733919 52 7.23e-04 GGTCTGAACA AAAGAAAT GACGATAGCT chrV:6998621-6998701 45 7.23e-04 GTACGTAATA AGTGAAAA TCAATAATGC chrI:12540794-12540874 68 7.23e-04 CCAATTAATT GAAGAAAA CAAGA chrX:5645823-5645903 21 7.23e-04 CACGTGAAAT GAAGAAAA TGCACGCGCC chrV:19524810-19524890 65 7.23e-04 TTAGATGAAC AGTGAAAA CGGAGAAA chrI:9401886-9401966 5 8.07e-04 GACG AAAAAAAA CAGAATGATA chrIV:10007878-10007958 8 8.07e-04 AAGCAGT AGAGAAAC GAGCGTGTTT chrV:10535556-10535636 9 8.07e-04 GGGAAAGC AGAGAAAC TAACAATTAC chrX:13325135-13325215 69 8.07e-04 GATGAAACGA AAAAAAAA TCAA chrX:16145383-16145463 33 8.07e-04 CAACAACTGA AAAAAAAA TCGTTTTGGC chrX:6729082-6729162 7 8.07e-04 TTTTTG AAAAAAAA ATGTATTAAA chrII:6345974-6346054 45 8.57e-04 AAAAATAAGA AGAAGAAG AGATGGCAGA chrIV:1064509-1064589 70 8.57e-04 CACACAGCGG AGAAGAAG CAT chrX:16324374-16324454 24 8.69e-04 TTTGGTAAGA AGAGGGAG GCGGCAAGAA chrII:4726276-4726356 59 9.86e-04 ACAAGCCGCG AGAAGAAA CTGAACGTTT chrIV:11016030-11016110 3 1.06e-03 CC GAAAAAAG GAAAGAAATA chrX:7559153-7559233 22 1.15e-03 ACAGTATCAC GGAAAAAT ATTTGCAGCT chrX:8752701-8752781 26 1.59e-03 TACGATGAGA GAAGAGAA GAAACAAGGG chrIII:6395847-6395927 72 1.69e-03 ACGACACGAC GGAGGGAG G chrV:6238467-6238547 52 1.77e-03 AATCAGTTGA AGAAGGAG AGGATGGGTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAGAAAR MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:11885226-11885306 2.1e-05 46_[+4]_26 chrII:12050800-12050880 2.1e-05 26_[+4]_46 chrX:17058460-17058540 2.1e-05 69_[+4]_3 chrX:17504639-17504719 2.1e-05 54_[+4]_18 chrV:12637974-12638054 5e-05 58_[+4]_14 chrII:5020809-5020889 5e-05 17_[+4]_55 chrIV:13109902-13109982 5e-05 58_[+4]_14 chrX:11724019-11724099 5e-05 47_[+4]_25 chrIII:2455104-2455184 5e-05 13_[+4]_59 chrII:13640374-13640454 5e-05 51_[+4]_21 chrV:19212468-19212548 6.6e-05 43_[+4]_29 chrV:5027874-5027954 6.6e-05 70_[+4]_2 chrI:9853119-9853199 6.6e-05 46_[+4]_26 chrI:10766730-10766810 6.6e-05 12_[+4]_60 chrIV:11814029-11814109 9.4e-05 46_[+4]_26 chrIII:9698721-9698801 9.4e-05 17_[+4]_55 chrIV:4471552-4471632 0.00011 38_[+4]_34 chrI:7116814-7116894 0.00011 50_[+4]_22 chrIII:4968330-4968410 0.00011 46_[+4]_26 chrV:5032367-5032447 0.00011 [+4]_72 chrIII:10636782-10636862 0.00011 20_[+4]_52 chrIII:10632781-10632861 0.00011 37_[+4]_35 chrX:8869401-8869481 0.00014 30_[+4]_42 chrIV:7258395-7258475 0.00014 14_[+4]_58 chrII:5142271-5142351 0.00014 54_[+4]_18 chrIII:12843014-12843094 0.00019 72_[+4] chrI:10577258-10577338 0.00019 61_[+4]_11 chrII:2804443-2804523 0.00019 37_[+4]_35 chrII:12785550-12785630 0.00019 55_[+4]_17 chrIII:7292713-7292793 0.00019 46_[+4]_26 chrII:12053650-12053730 0.00019 56_[+4]_16 chrX:6729744-6729824 0.00019 31_[+4]_41 chrIII:6144598-6144678 0.00023 60_[+4]_12 chrII:12064790-12064870 0.00023 19_[+4]_53 chrIV:8366424-8366504 0.00023 39_[+4]_33 chrX:2319782-2319862 0.00023 39_[+4]_33 chrIV:4212790-4212870 0.00025 25_[+4]_47 chrV:3388500-3388580 0.00025 4_[+4]_68 chrIII:9666844-9666924 0.00029 60_[+4]_12 chrI:5626467-5626547 0.00029 15_[+4]_57 chrIV:8234314-8234394 0.00029 12_[+4]_60 chrX:5344119-5344199 0.0003 45_[+4]_27 chrIII:13101260-13101340 0.00032 50_[+4]_22 chrIV:9516947-9517027 0.00032 32_[+4]_40 chrIII:8922141-8922221 0.00032 2_[+4]_70 chrV:13336009-13336089 0.00032 66_[+4]_6 chrI:14320487-14320567 0.00036 66_[+4]_6 chrV:5687752-5687832 0.00036 68_[+4]_4 chrV:10715303-10715383 0.00036 2_[+4]_70 chrX:3102372-3102452 0.00042 71_[+4]_1 chrX:5339458-5339538 0.00042 10_[+4]_62 chrIII:8986118-8986198 0.00048 60_[+4]_12 chrX:4139935-4140015 0.00048 2_[+4]_70 chrV:11739962-11740042 0.00048 70_[+4]_2 chrII:9620308-9620388 0.00048 64_[+4]_8 chrV:14212978-14213058 0.00048 67_[+4]_5 chrX:15622203-15622283 0.00048 37_[+4]_35 chrIII:8732104-8732184 0.00048 72_[+4] chrX:2116646-2116726 0.00056 13_[+4]_59 chrII:11830769-11830849 0.0006 70_[+4]_2 chrV:16354823-16354903 0.00072 47_[+4]_25 chrX:16290730-16290810 0.00072 3_[+4]_69 chrX:10231018-10231098 0.00072 16_[+4]_56 chrX:17638586-17638666 0.00072 25_[+4]_47 chrIII:8733839-8733919 0.00072 51_[+4]_21 chrV:6998621-6998701 0.00072 44_[+4]_28 chrI:12540794-12540874 0.00072 67_[+4]_5 chrX:5645823-5645903 0.00072 20_[+4]_52 chrV:19524810-19524890 0.00072 64_[+4]_8 chrI:9401886-9401966 0.00081 4_[+4]_68 chrIV:10007878-10007958 0.00081 7_[+4]_65 chrV:10535556-10535636 0.00081 8_[+4]_64 chrX:13325135-13325215 0.00081 68_[+4]_4 chrX:16145383-16145463 0.00081 32_[+4]_40 chrX:6729082-6729162 0.00081 6_[+4]_66 chrII:6345974-6346054 0.00086 44_[+4]_28 chrIV:1064509-1064589 0.00086 69_[+4]_3 chrX:16324374-16324454 0.00087 23_[+4]_49 chrII:4726276-4726356 0.00099 58_[+4]_14 chrIV:11016030-11016110 0.0011 2_[+4]_70 chrX:7559153-7559233 0.0011 21_[+4]_51 chrX:8752701-8752781 0.0016 25_[+4]_47 chrIII:6395847-6395927 0.0017 71_[+4]_1 chrV:6238467-6238547 0.0018 51_[+4]_21 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAGAAAR MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AGAGAAAR width=8 seqs=84 chrV:11885226-11885306 ( 47) AGAGAAAG 1 chrII:12050800-12050880 ( 27) AGAGAAAG 1 chrX:17058460-17058540 ( 70) AGAGAAAG 1 chrX:17504639-17504719 ( 55) AGAGAAAG 1 chrV:12637974-12638054 ( 59) AGAGAAAA 1 chrII:5020809-5020889 ( 18) AGAGAAAA 1 chrIV:13109902-13109982 ( 59) AGAGAAAA 1 chrX:11724019-11724099 ( 48) AGAGAAAA 1 chrIII:2455104-2455184 ( 14) AGAGAAAA 1 chrII:13640374-13640454 ( 52) AGAGAAAA 1 chrV:19212468-19212548 ( 44) GGAGAAAG 1 chrV:5027874-5027954 ( 71) GGAGAAAG 1 chrI:9853119-9853199 ( 47) GGAGAAAG 1 chrI:10766730-10766810 ( 13) GGAGAAAG 1 chrIV:11814029-11814109 ( 47) AGAAAAAG 1 chrIII:9698721-9698801 ( 18) AGAAAAAG 1 chrIV:4471552-4471632 ( 39) AGAGAGAG 1 chrI:7116814-7116894 ( 51) AGAGAGAG 1 chrIII:4968330-4968410 ( 47) AGAGAGAG 1 chrV:5032367-5032447 ( 1) AGAGAGAG 1 chrIII:10636782-10636862 ( 21) AGAGAGAG 1 chrIII:10632781-10632861 ( 38) AGAGAGAG 1 chrX:8869401-8869481 ( 31) AAAGAAAG 1 chrIV:7258395-7258475 ( 15) AAAGAAAG 1 chrII:5142271-5142351 ( 55) AAAGAAAG 1 chrIII:12843014-12843094 ( 73) AGAGAAAT 1 chrI:10577258-10577338 ( 62) AGAGAAAT 1 chrII:2804443-2804523 ( 38) GGAGAAAA 1 chrII:12785550-12785630 ( 56) AGAGAAAT 1 chrIII:7292713-7292793 ( 47) GGAGAAAA 1 chrII:12053650-12053730 ( 57) AGAGAAAT 1 chrX:6729744-6729824 ( 32) AGAGAAAT 1 chrIII:6144598-6144678 ( 61) AGAAAAAA 1 chrII:12064790-12064870 ( 20) AGAAAAAA 1 chrIV:8366424-8366504 ( 40) AGAAAAAA 1 chrX:2319782-2319862 ( 40) AGAAAAAA 1 chrIV:4212790-4212870 ( 26) AGAGAGAA 1 chrV:3388500-3388580 ( 5) AGAGAGAA 1 chrIII:9666844-9666924 ( 61) AAAGAAAA 1 chrI:5626467-5626547 ( 16) AAAGAAAA 1 chrIV:8234314-8234394 ( 13) AAAGAAAA 1 chrX:5344119-5344199 ( 46) AGAGGAAG 1 chrIII:13101260-13101340 ( 51) GGAAAAAG 1 chrIV:9516947-9517027 ( 33) GGAAAAAG 1 chrIII:8922141-8922221 ( 3) GGAAAAAG 1 chrV:13336009-13336089 ( 67) GGAAAAAG 1 chrI:14320487-14320567 ( 67) GGAGAGAG 1 chrV:5687752-5687832 ( 69) AGAGGAAA 1 chrV:10715303-10715383 ( 3) AGAGGAAA 1 chrX:3102372-3102452 ( 72) AGTGAAAG 1 chrX:5339458-5339538 ( 11) AGTGAAAG 1 chrIII:8986118-8986198 ( 61) AAAAAAAG 1 chrX:4139935-4140015 ( 3) AAAAAAAG 1 chrV:11739962-11740042 ( 71) AAAAAAAG 1 chrII:9620308-9620388 ( 65) GGAGAAAT 1 chrV:14212978-14213058 ( 68) GGAGAAAT 1 chrX:15622203-15622283 ( 38) AAAAAAAG 1 chrIII:8732104-8732184 ( 73) AAAAAAAG 1 chrX:2116646-2116726 ( 14) AAAGAGAG 1 chrII:11830769-11830849 ( 71) AGAGAGAT 1 chrV:16354823-16354903 ( 48) AGTGAAAA 1 chrX:16290730-16290810 ( 4) AGTGAAAA 1 chrX:10231018-10231098 ( 17) AGTGAAAA 1 chrX:17638586-17638666 ( 26) AAAGAAAT 1 chrIII:8733839-8733919 ( 52) AAAGAAAT 1 chrV:6998621-6998701 ( 45) AGTGAAAA 1 chrI:12540794-12540874 ( 68) GAAGAAAA 1 chrX:5645823-5645903 ( 21) GAAGAAAA 1 chrV:19524810-19524890 ( 65) AGTGAAAA 1 chrI:9401886-9401966 ( 5) AAAAAAAA 1 chrIV:10007878-10007958 ( 8) AGAGAAAC 1 chrV:10535556-10535636 ( 9) AGAGAAAC 1 chrX:13325135-13325215 ( 69) AAAAAAAA 1 chrX:16145383-16145463 ( 33) AAAAAAAA 1 chrX:6729082-6729162 ( 7) AAAAAAAA 1 chrII:6345974-6346054 ( 45) AGAAGAAG 1 chrIV:1064509-1064589 ( 70) AGAAGAAG 1 chrX:16324374-16324454 ( 24) AGAGGGAG 1 chrII:4726276-4726356 ( 59) AGAAGAAA 1 chrIV:11016030-11016110 ( 3) GAAAAAAG 1 chrX:7559153-7559233 ( 22) GGAAAAAT 1 chrX:8752701-8752781 ( 26) GAAGAGAA 1 chrIII:6395847-6395927 ( 72) GGAGGGAG 1 chrV:6238467-6238547 ( 52) AGAAGGAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAGAAAR MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.26574 E= 6.1e+001 141 -1304 6 -1304 -15 -1304 177 -1304 166 -1304 -1304 -175 3 -1304 169 -1304 162 -1304 -102 -1304 150 -1304 -28 -1304 178 -1304 -1304 -1304 39 -315 110 -109 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAGAAAR MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 84 E= 6.1e+001 0.773810 0.000000 0.226190 0.000000 0.261905 0.000000 0.738095 0.000000 0.916667 0.000000 0.000000 0.083333 0.297619 0.000000 0.702381 0.000000 0.892857 0.000000 0.107143 0.000000 0.821429 0.000000 0.178571 0.000000 1.000000 0.000000 0.000000 0.000000 0.380952 0.023810 0.464286 0.130952 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAGAAAR MEME-4 regular expression -------------------------------------------------------------------------------- [AG][GA]A[GA]AAA[GA] -------------------------------------------------------------------------------- Time 18.10 secs. ******************************************************************************** ******************************************************************************** MOTIF AGACGCAG MEME-5 width = 8 sites = 7 llr = 80 E-value = 3.4e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif AGACGCAG MEME-5 Description -------------------------------------------------------------------------------- Simplified A a:a:::a: pos.-specific C :::a:a:: probability G :a::a::a matrix T :::::::: bits 2.2 * *** * 2.0 * *** * 1.8 ******** 1.6 ******** Relative 1.3 ******** Entropy 1.1 ******** (16.4 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AGACGCAG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGACGCAG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrV:903646-903726 23 1.13e-05 GTCTGGTGAG AGACGCAG ACAGCGAGGG chrI:6260344-6260424 52 1.13e-05 CCAGGGTAAG AGACGCAG ATTGAAATGG chrV:13336009-13336089 57 1.13e-05 GACATTTGAG AGACGCAG AAGGAAAAAG chrII:7287281-7287361 54 1.13e-05 GAGAGAGCAT AGACGCAG GTGAACTAAC chrII:7944638-7944718 23 1.13e-05 AACAGAGAAG AGACGCAG AGTAACCTGT chrV:12096071-12096151 58 1.13e-05 TCGTACGTAG AGACGCAG AACGCACAAG chrV:2212086-2212166 59 1.13e-05 ACGTGCCGAG AGACGCAG ACTGTTGAAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGACGCAG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:903646-903726 1.1e-05 22_[+5]_50 chrI:6260344-6260424 1.1e-05 51_[+5]_21 chrV:13336009-13336089 1.1e-05 56_[+5]_16 chrII:7287281-7287361 1.1e-05 53_[+5]_19 chrII:7944638-7944718 1.1e-05 22_[+5]_50 chrV:12096071-12096151 1.1e-05 57_[+5]_15 chrV:2212086-2212166 1.1e-05 58_[+5]_14 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGACGCAG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AGACGCAG width=8 seqs=7 chrV:903646-903726 ( 23) AGACGCAG 1 chrI:6260344-6260424 ( 52) AGACGCAG 1 chrV:13336009-13336089 ( 57) AGACGCAG 1 chrII:7287281-7287361 ( 54) AGACGCAG 1 chrII:7944638-7944718 ( 23) AGACGCAG 1 chrV:12096071-12096151 ( 58) AGACGCAG 1 chrV:2212086-2212166 ( 59) AGACGCAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGACGCAG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.3267 E= 3.4e+002 178 -945 -945 -945 -945 -945 220 -945 178 -945 -945 -945 -945 223 -945 -945 -945 -945 220 -945 -945 223 -945 -945 178 -945 -945 -945 -945 -945 220 -945 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGACGCAG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 3.4e+002 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGACGCAG MEME-5 regular expression -------------------------------------------------------------------------------- AGACGCAG -------------------------------------------------------------------------------- Time 21.33 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:11595720-11595800 1.94e-01 80 chrX:6729082-6729162 1.22e-01 80 chrX:6746918-6746998 9.20e-04 37_[+2(7.21e-05)]_21_[+3(6.00e-05)]_\ 6 chrI:2125272-2125352 4.75e-02 23_[+2(2.88e-05)]_[+2(2.88e-05)]_41 chrIV:8234314-8234394 1.95e-01 80 chrX:16161099-16161179 1.15e-01 23_[+1(3.72e-05)]_49 chrV:2212086-2212166 1.62e-03 3_[+1(8.87e-05)]_47_[+5(1.13e-05)]_\ 14 chrX:16163556-16163636 3.89e-02 43_[+1(1.57e-05)]_29 chrIV:12711216-12711296 7.17e-02 47_[+1(1.57e-05)]_25 chrX:10903567-10903647 3.33e-02 80 chrI:9598443-9598523 2.22e-03 80 chrIV:3258656-3258736 3.25e-01 80 chrV:19524810-19524890 7.18e-03 14_[+1(7.93e-06)]_58 chrI:1845033-1845113 2.57e-01 32_[+1(8.87e-05)]_40 chrX:5468013-5468093 1.65e-02 37_[+1(7.41e-05)]_5_[+1(5.60e-05)]_\ 22 chrX:6729744-6729824 1.59e-01 80 chrX:6747118-6747198 3.12e-02 80 chrIII:8732104-8732184 1.82e-02 43_[+1(1.57e-05)]_29 chrX:6745643-6745723 1.72e-01 80 chrIII:11040749-11040829 8.33e-02 51_[+1(5.60e-05)]_21 chrI:10766730-10766810 1.15e-02 12_[+4(6.58e-05)]_60 chrIV:17174283-17174363 1.86e-01 80 chrIII:3621781-3621861 3.65e-01 80 chrII:12053650-12053730 3.07e-02 80 chrIV:10682341-10682421 1.06e-01 8_[+1(8.87e-05)]_64 chrX:7129583-7129663 2.73e-04 17_[+1(7.41e-05)]_31_[+2(7.21e-05)]_\ 16 chrII:4726276-4726356 1.90e-01 80 chrV:10715303-10715383 1.26e-01 80 chrV:10247167-10247247 1.49e-02 80 chrII:10693791-10693871 3.42e-02 80 chrV:12096071-12096151 1.78e-02 57_[+5(1.13e-05)]_15 chrIII:3952240-3952320 2.09e-02 31_[+2(1.64e-05)]_41 chrX:2319782-2319862 8.11e-02 80 chrIII:10632781-10632861 5.78e-02 80 chrV:13839544-13839624 2.06e-02 13_[+3(1.73e-05)]_59 chrIV:15393374-15393454 2.69e-01 80 chrI:9736402-9736482 2.03e-02 21_[+3(7.97e-05)]_51 chrV:667578-667658 8.99e-03 31_[+5(9.40e-05)]_41 chrV:8603380-8603460 5.42e-02 12_[+1(1.57e-05)]_60 chrX:16324374-16324454 9.72e-03 80 chrV:10020103-10020183 1.24e-02 28_[+3(9.85e-06)]_44 chrX:5339458-5339538 3.22e-01 80 chrX:6739551-6739631 4.61e-02 35_[+1(5.60e-05)]_37 chrI:5626467-5626547 6.51e-05 58_[+2(2.88e-05)]_14 chrX:5645823-5645903 6.99e-02 80 chrV:6348290-6348370 1.01e-02 42_[+1(5.60e-05)]_30 chrII:13640374-13640454 3.74e-02 51_[+4(4.99e-05)]_21 chrIII:8926618-8926698 9.72e-03 22_[+1(2.63e-05)]_50 chrX:13147222-13147302 1.66e-01 52_[+1(5.60e-05)]_20 chrIII:6395847-6395927 3.79e-03 42_[+1(7.93e-06)]_30 chrI:4333898-4333978 2.94e-02 66_[+2(1.64e-05)]_6 chrII:2962679-2962759 7.31e-04 4_[+1(5.60e-05)]_34_[+3(9.85e-06)]_\ 26 chrIII:6216137-6216217 9.56e-01 80 chrI:9853119-9853199 6.62e-03 46_[+4(6.58e-05)]_26 chrX:8752701-8752781 3.03e-01 80 chrI:12540794-12540874 2.96e-01 80 chrIII:9698721-9698801 2.40e-03 17_[+4(9.44e-05)]_55 chrII:5142271-5142351 1.18e-01 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chrIV:11901318-11901398 4.82e-01 80 chrIII:4968330-4968410 3.84e-04 32_[+2(1.64e-05)]_40 chrV:3388500-3388580 8.79e-02 80 chrV:14212978-14213058 2.07e-02 80 chrII:12785550-12785630 7.61e-02 80 chrV:14948692-14948772 4.15e-02 80 chrX:8869401-8869481 1.03e-01 80 chrIV:302896-302976 7.22e-01 80 chrII:7944638-7944718 1.19e-04 22_[+5(1.13e-05)]_22_[+1(7.93e-06)]_\ 20 chrIV:16178558-16178638 1.66e-02 80 chrV:8403288-8403368 8.29e-01 80 chrV:15774083-15774163 6.83e-02 29_[+1(7.41e-05)]_43 chrV:11046896-11046976 2.72e-01 65_[+1(5.60e-05)]_7 chrII:13196868-13196948 3.15e-02 80 chrIV:5605451-5605531 7.31e-02 80 chrIV:132197-132277 2.87e-03 53_[+3(9.85e-06)]_19 chrX:5344119-5344199 6.49e-02 80 chrX:4143426-4143506 5.79e-04 26_[+1(1.57e-05)]_46 chrI:7116814-7116894 1.60e-02 80 chrIII:9827360-9827440 2.84e-02 80 chrX:13325135-13325215 4.67e-01 80 chrV:6411390-6411470 9.56e-01 80 chrX:17504639-17504719 1.34e-02 54_[+4(2.13e-05)]_18 chrV:10535556-10535636 3.89e-02 37_[+1(5.60e-05)]_35 chrII:9620308-9620388 1.92e-01 80 chrX:12915247-12915327 1.72e-02 57_[+1(5.60e-05)]_15 chrIV:1064509-1064589 1.91e-01 80 chrIII:9666844-9666924 1.94e-01 80 chrX:2116646-2116726 2.82e-01 80 chrII:7287281-7287361 2.68e-02 53_[+5(1.13e-05)]_19 chrV:13336009-13336089 4.35e-03 56_[+5(1.13e-05)]_16 chrIV:7166726-7166806 8.37e-03 34_[+3(9.85e-06)]_38 chrIV:8146394-8146474 2.37e-01 80 chrIV:10007878-10007958 5.07e-04 30_[+3(2.48e-05)]_42 chrI:10765767-10765847 1.84e-01 80 chrX:4504419-4504499 4.58e-03 41_[+1(1.57e-05)]_31 chrV:11739962-11740042 3.86e-01 80 chrIII:3637355-3637435 5.75e-02 30_[+2(7.21e-05)]_42 chrIV:11016030-11016110 1.28e-01 80 chrII:7343051-7343131 1.00e-01 80 chrX:17236328-17236408 6.18e-01 80 chrX:10231018-10231098 1.61e-03 65_[+1(2.63e-05)]_7 chrIV:8366424-8366504 3.49e-02 80 chrIV:9737305-9737385 1.34e-01 80 chrV:14324664-14324744 6.29e-01 80 chrV:10432743-10432823 1.37e-01 80 chrV:4820772-4820852 9.74e-04 41_[+1(7.93e-06)]_31 chrX:9540593-9540673 4.18e-01 80 chrX:6121930-6122010 3.50e-02 80 chrX:348304-348384 3.43e-03 2_[+3(9.85e-06)]_70 chrIII:12446117-12446197 2.37e-01 80 chrX:16290730-16290810 1.74e-02 19_[+1(2.63e-05)]_53 chrII:5307320-5307400 8.99e-01 80 chrV:11217541-11217621 7.81e-01 80 chrX:15497113-15497193 4.55e-04 23_[+2(2.88e-05)]_22_[+1(7.93e-06)]_\ 19 chrIII:7273816-7273896 7.89e-02 80 chrIII:10399096-10399176 2.94e-02 80 chrII:2804443-2804523 3.12e-03 22_[+2(1.64e-05)]_50 chrI:6260344-6260424 1.54e-03 51_[+5(1.13e-05)]_21 chrIII:8983961-8984041 3.95e-01 80 chrX:17058460-17058540 8.93e-03 69_[+4(2.13e-05)]_3 chrIII:8922141-8922221 3.70e-03 51_[+1(5.60e-05)]_21 chrX:3020178-3020258 1.73e-01 80 chrV:8026506-8026586 6.36e-03 23_[+1(5.60e-05)]_23_[+1(1.57e-05)]_\ 18 chrV:10723396-10723476 2.06e-03 46_[+3(9.85e-06)]_26 chrIII:6180413-6180493 4.39e-01 80 chrI:10577258-10577338 5.71e-02 80 chrV:5687752-5687832 1.50e-01 80 chrI:3103239-3103319 2.45e-03 42_[+3(7.97e-05)]_4_[+2(7.21e-05)]_\ 18 chrIV:7982203-7982283 3.19e-02 7_[+3(9.46e-05)]_65 chrI:2659741-2659821 7.59e-04 4_[+1(7.93e-06)]_33_[+2(7.21e-05)]_\ 27 chrI:14320487-14320567 1.31e-02 80 chrII:8650829-8650909 5.21e-03 10_[+2(1.64e-05)]_19_[+3(5.27e-05)]_\ 35 chrX:14740111-14740191 1.28e-01 48_[+1(5.60e-05)]_24 chrX:16559586-16559666 4.83e-01 80 chrX:4498204-4498284 3.54e-01 80 chrIV:5089120-5089200 1.74e-01 16_[+1(8.87e-05)]_56 chrV:16354823-16354903 2.60e-01 80 chrIV:13109902-13109982 7.18e-03 58_[+4(4.99e-05)]_1_[+1(3.72e-05)]_\ 5 chrV:10161137-10161217 6.23e-01 80 chrII:14404387-14404467 1.96e-01 80 chrII:9344186-9344266 2.39e-01 80 chrX:2316311-2316391 4.02e-01 80 chrX:14145828-14145908 3.15e-01 80 chrIV:4212790-4212870 2.24e-01 80 chrIII:5623592-5623672 4.06e-02 80 chrII:12064790-12064870 3.21e-01 80 chrIV:9516947-9517027 2.65e-01 80 chrIV:8481458-8481538 7.80e-01 80 chrV:903646-903726 8.27e-03 22_[+5(1.13e-05)]_50 chrV:13333929-13334009 6.35e-01 80 chrX:12870241-12870321 4.15e-02 80 chrII:6345974-6346054 4.07e-02 80 chrII:11830769-11830849 1.85e-02 80 chrIII:5948551-5948631 3.88e-01 80 chrIV:4216308-4216388 1.39e-01 80 chrX:17421526-17421606 2.41e-02 42_[+3(4.00e-05)]_30 chrI:9401886-9401966 2.72e-02 41_[+1(5.60e-05)]_31 chrX:17515341-17515421 1.10e-01 80 chrX:8485559-8485639 5.56e-01 80 chrX:3102372-3102452 5.93e-01 80 chrV:13878351-13878431 8.87e-01 80 chrII:12050800-12050880 1.84e-03 26_[+4(2.13e-05)]_25_[+1(1.57e-05)]_\ 13 chrIII:12843014-12843094 5.31e-02 80 chrV:11859255-11859335 1.15e-01 80 chrIII:13101260-13101340 1.77e-01 80 chrX:4139935-4140015 1.58e-01 80 chrIV:4471552-4471632 4.51e-04 12_[+1(5.60e-05)]_60 chrII:5020809-5020889 4.29e-03 17_[+4(4.99e-05)]_33_[+5(9.40e-05)]_\ 14 chrIII:6144598-6144678 1.89e-02 10_[+1(8.87e-05)]_62 chrX:13748197-13748277 1.30e-02 14_[+1(2.63e-05)]_58 chrIV:17441458-17441538 2.35e-01 80 chrIV:14609955-14610035 3.16e-01 80 chrV:9085899-9085979 2.29e-01 80 chrX:12234505-12234585 9.16e-01 80 chrI:8351209-8351289 7.12e-04 80 chrX:6932178-6932258 2.95e-03 80 chrX:14500025-14500105 3.19e-02 51_[+3(9.46e-05)]_21 chrII:9291774-9291854 5.14e-02 80 chrX:17631828-17631908 8.16e-02 21_[+3(2.48e-05)]_51 chrI:5384210-5384290 3.26e-01 80 chrV:12637974-12638054 1.33e-02 58_[+4(4.99e-05)]_14 chrX:5628584-5628664 3.68e-01 80 chrIV:11814029-11814109 1.18e-03 46_[+4(9.44e-05)]_26 chrV:6238467-6238547 2.63e-01 80 chrIII:8986118-8986198 6.10e-01 80 chrI:8344512-8344592 1.17e-02 16_[+1(1.57e-05)]_56 chrII:7413425-7413505 1.43e-02 41_[+3(9.85e-06)]_31 chrV:11885226-11885306 6.58e-02 46_[+4(2.13e-05)]_26 chrX:6740670-6740750 3.05e-01 80 chrI:5540810-5540890 4.37e-02 5_[+2(2.88e-05)]_67 chrX:7654148-7654228 7.84e-02 80 chrIII:5472913-5472993 3.26e-02 14_[+2(2.88e-05)]_58 chrIII:12839088-12839168 4.91e-02 43_[+1(3.72e-05)]_29 chrV:7225116-7225196 1.93e-02 3_[+3(9.85e-06)]_69 chrV:6213355-6213435 3.62e-01 80 chrIII:5077277-5077357 2.33e-01 80 chrV:19212468-19212548 1.16e-02 43_[+4(6.58e-05)]_29 chrX:17540136-17540216 2.58e-01 80 chrIII:9391114-9391194 1.20e-03 11_[+3(9.85e-06)]_61 chrI:14075682-14075762 1.17e-02 36_[+1(7.41e-05)]_36 chrX:4244673-4244753 2.97e-01 80 chrX:16130313-16130393 2.83e-01 80 chrIII:1682428-1682508 8.62e-02 46_[+1(2.63e-05)]_26 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n06.farnam.hpc.yale.internal ********************************************************************************