******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/worm/fasta/RankLinear2.0_40/madf-2.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrII:6926180-6926260 1.0000 80 chrIV:6704761-6704841 1.0000 80 chrX:5056378-5056458 1.0000 80 chrII:14248251-14248331 1.0000 80 chrII:14249644-14249724 1.0000 80 chrX:12205672-12205752 1.0000 80 chrI:933477-933557 1.0000 80 chrX:12452276-12452356 1.0000 80 chrIV:11522790-11522870 1.0000 80 chrIII:931564-931644 1.0000 80 chrIV:9048255-9048335 1.0000 80 chrIV:11071074-11071154 1.0000 80 chrII:2570701-2570781 1.0000 80 chrV:12510084-12510164 1.0000 80 chrV:3098930-3099010 1.0000 80 chrI:10948388-10948468 1.0000 80 chrIII:3499975-3500055 1.0000 80 chrII:13736404-13736484 1.0000 80 chrII:14244672-14244752 1.0000 80 chrIV:11524368-11524448 1.0000 80 chrV:1821432-1821512 1.0000 80 chrX:9999899-9999979 1.0000 80 chrI:11609164-11609244 1.0000 80 chrII:10744983-10745063 1.0000 80 chrX:3969488-3969568 1.0000 80 chrV:5284757-5284837 1.0000 80 chrX:8156138-8156218 1.0000 80 chrV:4648014-4648094 1.0000 80 chrIV:16684414-16684494 1.0000 80 chrIV:13029908-13029988 1.0000 80 chrX:16944151-16944231 1.0000 80 chrII:10202462-10202542 1.0000 80 chrI:3994629-3994709 1.0000 80 chrII:9740772-9740852 1.0000 80 chrV:6880813-6880893 1.0000 80 chrX:1018483-1018563 1.0000 80 chrX:3914468-3914548 1.0000 80 chrI:4320852-4320932 1.0000 80 chrIII:178107-178187 1.0000 80 chrII:9258490-9258570 1.0000 80 chrII:15264785-15264865 1.0000 80 chrI:9969527-9969607 1.0000 80 chrI:9249392-9249472 1.0000 80 chrII:66428-66508 1.0000 80 chrX:12407398-12407478 1.0000 80 chrIV:6645978-6646058 1.0000 80 chrIII:2576804-2576884 1.0000 80 chrV:7230997-7231077 1.0000 80 chrI:9855601-9855681 1.0000 80 chrIII:3664393-3664473 1.0000 80 chrI:3334553-3334633 1.0000 80 chrII:15218038-15218118 1.0000 80 chrII:13984942-13985022 1.0000 80 chrII:7001569-7001649 1.0000 80 chrI:3648103-3648183 1.0000 80 chrI:4633643-4633723 1.0000 80 chrX:3694358-3694438 1.0000 80 chrX:9296702-9296782 1.0000 80 chrX:2885438-2885518 1.0000 80 chrII:11676104-11676184 1.0000 80 chrIII:8650376-8650456 1.0000 80 chrX:10900222-10900302 1.0000 80 chrIV:7486363-7486443 1.0000 80 chrX:10197314-10197394 1.0000 80 chrV:7979036-7979116 1.0000 80 chrX:10435690-10435770 1.0000 80 chrIII:3271766-3271846 1.0000 80 chrIV:4781286-4781366 1.0000 80 chrIII:344118-344198 1.0000 80 chrII:9619605-9619685 1.0000 80 chrI:9807331-9807411 1.0000 80 chrI:7712818-7712898 1.0000 80 chrV:6709221-6709301 1.0000 80 chrV:13393371-13393451 1.0000 80 chrX:14908487-14908567 1.0000 80 chrII:4238044-4238124 1.0000 80 chrIV:2033185-2033265 1.0000 80 chrI:6136534-6136614 1.0000 80 chrV:14855784-14855864 1.0000 80 chrX:17610599-17610679 1.0000 80 chrX:15310449-15310529 1.0000 80 chrX:4016337-4016417 1.0000 80 chrV:12331954-12332034 1.0000 80 chrII:10384844-10384924 1.0000 80 chrIII:8971792-8971872 1.0000 80 chrII:18952-19032 1.0000 80 chrIII:1824688-1824768 1.0000 80 chrX:13584156-13584236 1.0000 80 chrV:14876369-14876449 1.0000 80 chrIII:7642172-7642252 1.0000 80 chrX:5407429-5407509 1.0000 80 chrIII:13061869-13061949 1.0000 80 chrIV:11310794-11310874 1.0000 80 chrI:7548332-7548412 1.0000 80 chrIII:10094668-10094748 1.0000 80 chrI:14181299-14181379 1.0000 80 chrX:10188659-10188739 1.0000 80 chrI:9077416-9077496 1.0000 80 chrV:4499235-4499315 1.0000 80 chrV:19343488-19343568 1.0000 80 chrX:12890300-12890380 1.0000 80 chrIV:3135198-3135278 1.0000 80 chrI:1741039-1741119 1.0000 80 chrI:10026063-10026143 1.0000 80 chrII:14250324-14250404 1.0000 80 chrIII:535315-535395 1.0000 80 chrI:9268900-9268980 1.0000 80 chrIII:9104174-9104254 1.0000 80 chrV:1154045-1154125 1.0000 80 chrV:9583094-9583174 1.0000 80 chrI:11323339-11323419 1.0000 80 chrIII:6137597-6137677 1.0000 80 chrI:7195018-7195098 1.0000 80 chrII:6347918-6347998 1.0000 80 chrII:7002991-7003071 1.0000 80 chrII:7708725-7708805 1.0000 80 chrIII:9817348-9817428 1.0000 80 chrI:5637889-5637969 1.0000 80 chrI:9448166-9448246 1.0000 80 chrV:14847426-14847506 1.0000 80 chrI:10469056-10469136 1.0000 80 chrI:1271165-1271245 1.0000 80 chrIV:8629887-8629967 1.0000 80 chrIV:13330054-13330134 1.0000 80 chrI:9611651-9611731 1.0000 80 chrIII:9112707-9112787 1.0000 80 chrX:8551854-8551934 1.0000 80 chrIII:1122426-1122506 1.0000 80 chrII:7676586-7676666 1.0000 80 chrIV:1108176-1108256 1.0000 80 chrI:3873927-3874007 1.0000 80 chrII:5017402-5017482 1.0000 80 chrIII:5769897-5769977 1.0000 80 chrIII:12616199-12616279 1.0000 80 chrIV:132271-132351 1.0000 80 chrIV:3232965-3233045 1.0000 80 chrI:14731709-14731789 1.0000 80 chrX:9932492-9932572 1.0000 80 chrIII:8250398-8250478 1.0000 80 chrIV:16398373-16398453 1.0000 80 chrI:13310396-13310476 1.0000 80 chrIII:3916775-3916855 1.0000 80 chrIII:433092-433172 1.0000 80 chrIII:10123735-10123815 1.0000 80 chrV:14038516-14038596 1.0000 80 chrV:6785252-6785332 1.0000 80 chrI:5164956-5165036 1.0000 80 chrX:5336686-5336766 1.0000 80 chrX:5686233-5686313 1.0000 80 chrI:1651333-1651413 1.0000 80 chrV:6246707-6246787 1.0000 80 chrI:7550356-7550436 1.0000 80 chrIII:3175137-3175217 1.0000 80 chrII:14635354-14635434 1.0000 80 chrIV:1388276-1388356 1.0000 80 chrX:993189-993269 1.0000 80 chrV:13176509-13176589 1.0000 80 chrIV:410535-410615 1.0000 80 chrX:10821309-10821389 1.0000 80 chrII:12339253-12339333 1.0000 80 chrI:9141732-9141812 1.0000 80 chrIV:16399185-16399265 1.0000 80 chrII:11635911-11635991 1.0000 80 chrV:12465495-12465575 1.0000 80 chrIII:7729727-7729807 1.0000 80 chrX:4389066-4389146 1.0000 80 chrI:1435579-1435659 1.0000 80 chrV:11029437-11029517 1.0000 80 chrII:5772889-5772969 1.0000 80 chrX:14636838-14636918 1.0000 80 chrII:4942457-4942537 1.0000 80 chrX:3348033-3348113 1.0000 80 chrV:19723031-19723111 1.0000 80 chrI:4175893-4175973 1.0000 80 chrX:3994609-3994689 1.0000 80 chrX:16928267-16928347 1.0000 80 chrX:10524629-10524709 1.0000 80 chrIII:7199005-7199085 1.0000 80 chrI:1175811-1175891 1.0000 80 chrIV:7402295-7402375 1.0000 80 chrII:11635182-11635262 1.0000 80 chrX:6220119-6220199 1.0000 80 chrX:14115633-14115713 1.0000 80 chrX:13969485-13969565 1.0000 80 chrX:10026417-10026497 1.0000 80 chrX:4444267-4444347 1.0000 80 chrIII:8106620-8106700 1.0000 80 chrX:7809710-7809790 1.0000 80 chrX:15173667-15173747 1.0000 80 chrII:11634460-11634540 1.0000 80 chrIV:842798-842878 1.0000 80 chrIII:6805551-6805631 1.0000 80 chrIII:5503350-5503430 1.0000 80 chrII:12042369-12042449 1.0000 80 chrII:13976320-13976400 1.0000 80 chrX:16604675-16604755 1.0000 80 chrII:9054730-9054810 1.0000 80 chrI:3636540-3636620 1.0000 80 chrV:4731530-4731610 1.0000 80 chrIV:1738376-1738456 1.0000 80 chrIV:2704148-2704228 1.0000 80 chrX:14480430-14480510 1.0000 80 chrIII:4426849-4426929 1.0000 80 chrI:1575721-1575801 1.0000 80 chrX:8995603-8995683 1.0000 80 chrII:14358109-14358189 1.0000 80 chrIV:16865664-16865744 1.0000 80 chrX:2432645-2432725 1.0000 80 chrX:11262447-11262527 1.0000 80 chrIII:13717686-13717766 1.0000 80 chrII:10169569-10169649 1.0000 80 chrI:10642478-10642558 1.0000 80 chrIV:4650749-4650829 1.0000 80 chrIV:16490196-16490276 1.0000 80 chrX:9338004-9338084 1.0000 80 chrX:13781609-13781689 1.0000 80 chrII:4955529-4955609 1.0000 80 chrV:16552921-16553001 1.0000 80 chrI:7954910-7954990 1.0000 80 chrIII:5308444-5308524 1.0000 80 chrII:12798859-12798939 1.0000 80 chrI:11505487-11505567 1.0000 80 chrIII:4378768-4378848 1.0000 80 chrII:3521494-3521574 1.0000 80 chrII:8747434-8747514 1.0000 80 chrX:13950689-13950769 1.0000 80 chrIII:11243630-11243710 1.0000 80 chrX:11546770-11546850 1.0000 80 chrII:6783008-6783088 1.0000 80 chrV:13396520-13396600 1.0000 80 chrIII:11792784-11792864 1.0000 80 chrII:11157821-11157901 1.0000 80 chrIII:3505319-3505399 1.0000 80 chrII:6248626-6248706 1.0000 80 chrIII:10432235-10432315 1.0000 80 chrV:53434-53514 1.0000 80 chrV:5592471-5592551 1.0000 80 chrIV:16491726-16491806 1.0000 80 chrII:6913465-6913545 1.0000 80 chrX:13945667-13945747 1.0000 80 chrV:12780413-12780493 1.0000 80 chrX:8386139-8386219 1.0000 80 chrV:5917861-5917941 1.0000 80 chrX:1319878-1319958 1.0000 80 chrII:11634257-11634337 1.0000 80 chrIII:8768064-8768144 1.0000 80 chrI:13475568-13475648 1.0000 80 chrV:6879627-6879707 1.0000 80 chrI:14721592-14721672 1.0000 80 chrX:1858748-1858828 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/worm/inference_raw/MEME/RankLinear2.0_40_madf-2/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/worm/fasta/RankLinear2.0_40/madf-2.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.232 C 0.265 G 0.247 T 0.255 Background letter frequencies (from file dataset with add-one prior applied): A 0.232 C 0.265 G 0.247 T 0.255 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF RCAMAMAM MEME-1 width = 8 sites = 57 llr = 441 E-value = 1.7e-010 ******************************************************************************** -------------------------------------------------------------------------------- Motif RCAMAMAM MEME-1 Description -------------------------------------------------------------------------------- Simplified A 4:a6a4a5 pos.-specific C :a:4:6:3 probability G 5::::::1 matrix T 2::::::1 bits 2.1 * * * 1.9 ** * * 1.7 ** * * 1.5 ** * * Relative 1.3 ** * * Entropy 1.1 ****** (11.2 bits) 0.8 ****** 0.6 ******* 0.4 ******* 0.2 ******** 0.0 -------- Multilevel GCAAACAA consensus A C A C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCAMAMAM MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrII:7708725-7708805 15 1.17e-05 GGGGCTATCT GCAAACAA TGCAATGCGC chrX:2432645-2432725 54 2.19e-05 ATTGCAAAAC GCAAAAAA AGTGAATGAG chrI:3636540-3636620 24 2.19e-05 AATAAATCCG GCAAAAAA CAACAAAAAT chrI:4175893-4175973 6 2.19e-05 AAGAG GCAAAAAA GAGACGGGGA chrIII:9104174-9104254 22 2.19e-05 GTGAGTTTTT GCAAAAAA TTTCGCTCCC chrV:14876369-14876449 9 2.19e-05 TAGAATTT GCAAAAAA GAATGCCCCG chrI:4633643-4633723 61 2.19e-05 TGCCAGGGTT GCAAAAAA TCATTTTCGA chrX:16944151-16944231 32 2.19e-05 CCAAGAGCGT GCAAAAAA ACTTGCACAC chrII:2570701-2570781 27 2.19e-05 TAAAAAACCG GCAAAAAA TCTTTTTAAA chrIII:5503350-5503430 33 3.28e-05 ACTGGCCAGC ACAAACAA GACTGGTGAA chrIII:4426849-4426929 2 4.24e-05 C ACAAAAAA TTTGGAACGC chrII:9054730-9054810 3 4.24e-05 GC ACAAAAAA CATTTGCCGC chrX:10821309-10821389 6 4.24e-05 AAAAA ACAAAAAA TAACTTCCCA chrI:1741039-1741119 32 4.24e-05 acgttgatct acaaaaaa tgcgggaact chrX:10188659-10188739 21 4.24e-05 ATGAGGAGAC ACAAAAAA TGAGTGCCAC chrII:9740772-9740852 19 4.24e-05 CGCGTCTGCG ACAAAAAA GAGGCGGAGT chrI:9611651-9611731 9 5.57e-05 CTGCGTCT GCACACAA CATAATCTAC chrI:7195018-7195098 28 5.57e-05 ACCTCCTGCA GCACACAA TCCTCTATTA chrV:9583094-9583174 40 5.57e-05 CAAGGTTGTC GCACACAA TTGGGATATT chrI:3994629-3994709 66 5.57e-05 GGCCAAATGA GCACACAA CAGGCGA chrII:11634257-11634337 31 6.74e-05 CGAATCGCTC GCACAAAA CGTGCCCGGC chrIII:3916775-3916855 48 9.32e-05 CGGCGACTTT GCAAACAC TGCGCGCGCA chrI:1271165-1271245 2 9.32e-05 G GCAAACAC GAAAAACCGG chrIV:3135198-3135278 51 9.32e-05 acacacacac acacacaA TTCAATGGGA chrI:7548332-7548412 65 9.32e-05 actcacacac acacacaa ctcacaca chrX:3694358-3694438 72 9.32e-05 caaaacacaa acacacaa a chrV:4731530-4731610 62 1.16e-04 CGGGGACATT GCAAAAAC GCGCGCGCGC chrI:1175811-1175891 58 1.16e-04 CGGCACACTT GCAAAAAC CGTGCGCCCA chrIII:3271766-3271846 49 1.51e-04 tgcgtctcca tcaaacaa tgcactatct chrII:6783008-6783088 8 1.77e-04 CTCTATC GCACACAC ACACTCTCGG chrV:11029437-11029517 2 1.77e-04 T TCAAAAAA AAATTTATCC chrI:1435579-1435659 60 1.77e-04 CGGAGGTGCC TCAAAAAA CGCGCCCCAC chrX:10900222-10900302 21 1.77e-04 ACAGTTGTGT GCACACAC GGGACGCTAC chrX:1018483-1018563 41 1.77e-04 GCATCCCAac gcacacac attgcagcac chrV:1821432-1821512 49 1.77e-04 CGCAATCTGC GCACACAC TTTGGTTTCC chrIV:132271-132351 49 2.29e-04 tcaaccacac acacacac acacGTATAC chrX:17610599-17610679 40 2.29e-04 GCGGGAAAAG GCAAAAAT AATATATTTG chrV:13393371-13393451 21 2.29e-04 ATGGGAAGGG ACACACAC GGGAGGGAGA chrX:2885438-2885518 6 2.29e-04 cacac acacacac acgcacgctc chrI:3334553-3334633 26 2.29e-04 CCGcacacag acacacac gagagagaac chrII:14244672-14244752 70 2.29e-04 AGacacacac acacacac aca chrX:4389066-4389146 47 2.53e-04 TCGTCTATCC ACAAACAT ATGACGAAAC chrII:6248626-6248706 61 2.78e-04 CTATTGTCGC TCACACAA TGTAGGTTCG chrV:16552921-16553001 9 2.78e-04 GTAAAAAT ACAAAAAT AATACGTGCG chrV:12780413-12780493 69 3.30e-04 CATTTCAACA GCAAACAG GGCA chrX:9338004-9338084 24 3.30e-04 CGCGGTGTAC GCACACAT TCCGCTCGCT chrX:6220119-6220199 30 3.30e-04 GGCCACATTT TCAAACAC GTACACTCGA chrX:16604675-16604755 34 3.66e-04 AAGTTATTAG GCAAAAAG ATTCTCCCCG chrII:5772889-5772969 17 3.66e-04 TTCCGAATAC GCAAAAAG TTTAGCACGA chrI:10026063-10026143 44 3.66e-04 CTGCCAATTT TCAAAAAC GGAATTCTTT chrV:13396520-13396600 42 3.91e-04 CCATCCCCAT ACACACAT ACGCATACAC chrII:11634460-11634540 52 3.91e-04 CGGCCCCCCG ACACACAT ACACAGACAG chrX:11546770-11546850 58 4.44e-04 CCTCCGCGCC TCACACAC TCTCTCGTTC chrII:9619605-9619685 11 4.83e-04 CGCCAACGCA TCAAACAT TCGTTTCGTA chrX:11262447-11262527 1 5.08e-04 . ACACACAG CTCTCTCATC chrIII:7199005-7199085 62 5.08e-04 TGGCGGTAAT TCAAAAAT AATATTTTAA chrV:7979036-7979116 48 5.08e-04 TGGAGGACAT ACACACAG TGAGGGACAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCAMAMAM MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:7708725-7708805 1.2e-05 14_[+1]_58 chrX:2432645-2432725 2.2e-05 53_[+1]_19 chrI:3636540-3636620 2.2e-05 23_[+1]_49 chrI:4175893-4175973 2.2e-05 5_[+1]_67 chrIII:9104174-9104254 2.2e-05 21_[+1]_51 chrV:14876369-14876449 2.2e-05 8_[+1]_64 chrI:4633643-4633723 2.2e-05 60_[+1]_12 chrX:16944151-16944231 2.2e-05 31_[+1]_41 chrII:2570701-2570781 2.2e-05 26_[+1]_46 chrIII:5503350-5503430 3.3e-05 32_[+1]_40 chrIII:4426849-4426929 4.2e-05 1_[+1]_71 chrII:9054730-9054810 4.2e-05 2_[+1]_70 chrX:10821309-10821389 4.2e-05 5_[+1]_67 chrI:1741039-1741119 4.2e-05 31_[+1]_41 chrX:10188659-10188739 4.2e-05 20_[+1]_52 chrII:9740772-9740852 4.2e-05 18_[+1]_54 chrI:9611651-9611731 5.6e-05 8_[+1]_64 chrI:7195018-7195098 5.6e-05 27_[+1]_45 chrV:9583094-9583174 5.6e-05 39_[+1]_33 chrI:3994629-3994709 5.6e-05 65_[+1]_7 chrII:11634257-11634337 6.7e-05 30_[+1]_42 chrIII:3916775-3916855 9.3e-05 47_[+1]_25 chrI:1271165-1271245 9.3e-05 1_[+1]_71 chrIV:3135198-3135278 9.3e-05 50_[+1]_22 chrI:7548332-7548412 9.3e-05 64_[+1]_8 chrX:3694358-3694438 9.3e-05 71_[+1]_1 chrV:4731530-4731610 0.00012 61_[+1]_11 chrI:1175811-1175891 0.00012 57_[+1]_15 chrIII:3271766-3271846 0.00015 48_[+1]_24 chrII:6783008-6783088 0.00018 7_[+1]_65 chrV:11029437-11029517 0.00018 1_[+1]_71 chrI:1435579-1435659 0.00018 59_[+1]_13 chrX:10900222-10900302 0.00018 20_[+1]_52 chrX:1018483-1018563 0.00018 40_[+1]_32 chrV:1821432-1821512 0.00018 48_[+1]_24 chrIV:132271-132351 0.00023 48_[+1]_24 chrX:17610599-17610679 0.00023 39_[+1]_33 chrV:13393371-13393451 0.00023 20_[+1]_52 chrX:2885438-2885518 0.00023 5_[+1]_67 chrI:3334553-3334633 0.00023 25_[+1]_47 chrII:14244672-14244752 0.00023 69_[+1]_3 chrX:4389066-4389146 0.00025 46_[+1]_26 chrII:6248626-6248706 0.00028 60_[+1]_12 chrV:16552921-16553001 0.00028 8_[+1]_64 chrV:12780413-12780493 0.00033 68_[+1]_4 chrX:9338004-9338084 0.00033 23_[+1]_49 chrX:6220119-6220199 0.00033 29_[+1]_43 chrX:16604675-16604755 0.00037 33_[+1]_39 chrII:5772889-5772969 0.00037 16_[+1]_56 chrI:10026063-10026143 0.00037 43_[+1]_29 chrV:13396520-13396600 0.00039 41_[+1]_31 chrII:11634460-11634540 0.00039 51_[+1]_21 chrX:11546770-11546850 0.00044 57_[+1]_15 chrII:9619605-9619685 0.00048 10_[+1]_62 chrX:11262447-11262527 0.00051 [+1]_72 chrIII:7199005-7199085 0.00051 61_[+1]_11 chrV:7979036-7979116 0.00051 47_[+1]_25 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCAMAMAM MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RCAMAMAM width=8 seqs=57 chrII:7708725-7708805 ( 15) GCAAACAA 1 chrX:2432645-2432725 ( 54) GCAAAAAA 1 chrI:3636540-3636620 ( 24) GCAAAAAA 1 chrI:4175893-4175973 ( 6) GCAAAAAA 1 chrIII:9104174-9104254 ( 22) GCAAAAAA 1 chrV:14876369-14876449 ( 9) GCAAAAAA 1 chrI:4633643-4633723 ( 61) GCAAAAAA 1 chrX:16944151-16944231 ( 32) GCAAAAAA 1 chrII:2570701-2570781 ( 27) GCAAAAAA 1 chrIII:5503350-5503430 ( 33) ACAAACAA 1 chrIII:4426849-4426929 ( 2) ACAAAAAA 1 chrII:9054730-9054810 ( 3) ACAAAAAA 1 chrX:10821309-10821389 ( 6) ACAAAAAA 1 chrI:1741039-1741119 ( 32) ACAAAAAA 1 chrX:10188659-10188739 ( 21) ACAAAAAA 1 chrII:9740772-9740852 ( 19) ACAAAAAA 1 chrI:9611651-9611731 ( 9) GCACACAA 1 chrI:7195018-7195098 ( 28) GCACACAA 1 chrV:9583094-9583174 ( 40) GCACACAA 1 chrI:3994629-3994709 ( 66) GCACACAA 1 chrII:11634257-11634337 ( 31) GCACAAAA 1 chrIII:3916775-3916855 ( 48) GCAAACAC 1 chrI:1271165-1271245 ( 2) GCAAACAC 1 chrIV:3135198-3135278 ( 51) ACACACAA 1 chrI:7548332-7548412 ( 65) ACACACAA 1 chrX:3694358-3694438 ( 72) ACACACAA 1 chrV:4731530-4731610 ( 62) GCAAAAAC 1 chrI:1175811-1175891 ( 58) GCAAAAAC 1 chrIII:3271766-3271846 ( 49) TCAAACAA 1 chrII:6783008-6783088 ( 8) GCACACAC 1 chrV:11029437-11029517 ( 2) TCAAAAAA 1 chrI:1435579-1435659 ( 60) TCAAAAAA 1 chrX:10900222-10900302 ( 21) GCACACAC 1 chrX:1018483-1018563 ( 41) GCACACAC 1 chrV:1821432-1821512 ( 49) GCACACAC 1 chrIV:132271-132351 ( 49) ACACACAC 1 chrX:17610599-17610679 ( 40) GCAAAAAT 1 chrV:13393371-13393451 ( 21) ACACACAC 1 chrX:2885438-2885518 ( 6) ACACACAC 1 chrI:3334553-3334633 ( 26) ACACACAC 1 chrII:14244672-14244752 ( 70) ACACACAC 1 chrX:4389066-4389146 ( 47) ACAAACAT 1 chrII:6248626-6248706 ( 61) TCACACAA 1 chrV:16552921-16553001 ( 9) ACAAAAAT 1 chrV:12780413-12780493 ( 69) GCAAACAG 1 chrX:9338004-9338084 ( 24) GCACACAT 1 chrX:6220119-6220199 ( 30) TCAAACAC 1 chrX:16604675-16604755 ( 34) GCAAAAAG 1 chrII:5772889-5772969 ( 17) GCAAAAAG 1 chrI:10026063-10026143 ( 44) TCAAAAAC 1 chrV:13396520-13396600 ( 42) ACACACAT 1 chrII:11634460-11634540 ( 52) ACACACAT 1 chrX:11546770-11546850 ( 58) TCACACAC 1 chrII:9619605-9619685 ( 11) TCAAACAT 1 chrX:11262447-11262527 ( 1) ACACACAG 1 chrIII:7199005-7199085 ( 62) TCAAAAAT 1 chrV:7979036-7979116 ( 48) ACACACAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCAMAMAM MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.0004 E= 1.7e-010 66 -1248 94 -69 -1248 191 -1248 -1248 210 -1248 -1248 -1248 132 67 -1248 -1248 210 -1248 -1248 -1248 92 108 -1248 -1248 210 -1248 -1248 -1248 108 8 -149 -86 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCAMAMAM MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 57 E= 1.7e-010 0.368421 0.000000 0.473684 0.157895 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.578947 0.421053 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.438596 0.561404 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.491228 0.280702 0.087719 0.140351 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCAMAMAM MEME-1 regular expression -------------------------------------------------------------------------------- [GA]CA[AC]A[CA]A[AC] -------------------------------------------------------------------------------- Time 5.14 secs. ******************************************************************************** ******************************************************************************** MOTIF AGWGWGWG MEME-2 width = 8 sites = 39 llr = 327 E-value = 2.2e-007 ******************************************************************************** -------------------------------------------------------------------------------- Motif AGWGWGWG MEME-2 Description -------------------------------------------------------------------------------- Simplified A 7:3:5:4: pos.-specific C ::::::1: probability G :a:a:a:a matrix T 3:7:5:5: bits 2.1 * * * * 1.9 * * * * 1.7 * * * * 1.5 * * * * Relative 1.3 ** * * * Entropy 1.1 ****** * (12.1 bits) 0.8 ****** * 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AGTGTGTG consensus T A A A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGWGWGWG MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:13945667-13945747 38 2.73e-05 TTCTTGCCCC AGTGAGTG TGCGTGTGTC chrII:10169569-10169649 70 2.73e-05 gtgtggtgcg agtgtgtg tgt chrII:11635182-11635262 71 2.73e-05 GGGTGTGGTG AGTGAGTG TT chrIII:3916775-3916855 30 2.73e-05 GAAAACCTAA AGTGTGTG CGGCGACTTT chrI:14731709-14731789 17 2.73e-05 GGCTCGTCGC AGTGAGTG AAAATGTGCG chrIII:6137597-6137677 16 2.73e-05 CGTGTATGCG AGTGTGTG GGGCTCCAGG chrI:11323339-11323419 16 2.73e-05 GAAAATGTCA AGTGTGTG CGGCGGTTTG chrI:4633643-4633723 45 2.73e-05 TTTTGCATAA AGTGTGTG CCAGGGTTGC chrII:6347918-6347998 6 5.22e-05 GTGCA AGTGAGAG AGGGAGTGTG chrIII:7642172-7642252 19 5.22e-05 CGGCCTTATG AGTGAGAG CCATAAATCC chrV:13393371-13393451 45 5.22e-05 GAGATACAAG AGTGAGAG AGATACGAGG chrI:3648103-3648183 9 5.22e-05 aaagaaag agtgagag ttagagagag chrI:3994629-3994709 31 5.22e-05 GTGGGGGAAG AGTGAGAG AGAGTGCAAG chrII:10202462-10202542 34 5.22e-05 AGTGTGAAAG AGTGAGAG AATTCGAGAA chrIV:16490196-16490276 20 7.71e-05 aaagagagag agagagtg gcgagggagg chrIV:1388276-1388356 45 7.71e-05 TGCCTAGAGA AGAGTGTG CGGGAGGGGC chrX:8551854-8551934 46 7.71e-05 CTATGGGGAG AGAGTGTG CACTGAATTC chrII:13736404-13736484 58 7.71e-05 AGTACACgtc agagtgtg ttatttcggt chrI:13475568-13475648 62 9.97e-05 AACCAGAAGg agagagag agagagatac chrII:12798859-12798939 66 9.97e-05 CTCCCGTACG AGAGAGAG CCGCCGT chrX:7809710-7809790 7 9.97e-05 ggtgtA AGAGAGAG GGACATTTTC chrIV:410535-410615 2 9.97e-05 C AGAGAGAG ACACACCTAG chrIV:3135198-3135278 12 9.97e-05 ATCGACGAGA AGAGTGAG cacatacaca chrX:4016337-4016417 72 9.97e-05 tagtagtagc agAGAGAG A chrIII:931564-931644 37 9.97e-05 gtgggaagcc agagagag taaaatatgg chrIII:13717686-13717766 60 1.30e-04 GGTTGgtgtg tgtgtgtg tgtctgtgtg chrI:7550356-7550436 23 1.30e-04 TTtgtgtgtg tgtgtgtg tttgtgtgtg chrI:1651333-1651413 37 1.30e-04 agggtgtgtg tgtgtgtg tgCAGGATGG chrX:9932492-9932572 27 1.30e-04 TGTGCGTTTC TGTGTGTG AGTGAGCGTG chrI:7712818-7712898 28 1.30e-04 GAGTGCCTCC TGTGTGTG CGATTGTTGA chrI:9807331-9807411 28 1.30e-04 AATGTGTATG TGTGTGTG CCACAAGCTC chrII:11676104-11676184 35 1.30e-04 GACGCGTATG TGTGTGTG TTGGCGCACT chrX:12407398-12407478 63 1.30e-04 tgagtatgtg tgtgtgtg tatgtgtgtg chrI:7954910-7954990 50 1.57e-04 GAGAAAAAAA TGTGAGAG GAGAAGGGCA chrII:3521494-3521574 69 1.86e-04 GCAGGCCGAA AGTGTGCG CCAC chrX:3348033-3348113 30 1.86e-04 GTTGAGTGGT AGTGTGCG GTACTTCGGT chrIII:8250398-8250478 28 1.86e-04 AATTACTCGT AGTGTGCG TTCTACGGAA chrX:9338004-9338084 64 2.38e-04 TGGTGTCCTC TGAGAGAG GGCCGACGG chrIV:11522790-11522870 8 2.64e-04 GAGACTT AGAGAGCG CAACGTGTAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGWGWGWG MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:13945667-13945747 2.7e-05 37_[+2]_35 chrII:10169569-10169649 2.7e-05 69_[+2]_3 chrII:11635182-11635262 2.7e-05 70_[+2]_2 chrIII:3916775-3916855 2.7e-05 29_[+2]_43 chrI:14731709-14731789 2.7e-05 16_[+2]_56 chrIII:6137597-6137677 2.7e-05 15_[+2]_57 chrI:11323339-11323419 2.7e-05 15_[+2]_57 chrI:4633643-4633723 2.7e-05 44_[+2]_28 chrII:6347918-6347998 5.2e-05 5_[+2]_67 chrIII:7642172-7642252 5.2e-05 18_[+2]_54 chrV:13393371-13393451 5.2e-05 44_[+2]_28 chrI:3648103-3648183 5.2e-05 8_[+2]_64 chrI:3994629-3994709 5.2e-05 30_[+2]_42 chrII:10202462-10202542 5.2e-05 33_[+2]_39 chrIV:16490196-16490276 7.7e-05 19_[+2]_53 chrIV:1388276-1388356 7.7e-05 44_[+2]_28 chrX:8551854-8551934 7.7e-05 45_[+2]_27 chrII:13736404-13736484 7.7e-05 57_[+2]_15 chrI:13475568-13475648 0.0001 61_[+2]_11 chrII:12798859-12798939 0.0001 65_[+2]_7 chrX:7809710-7809790 0.0001 6_[+2]_66 chrIV:410535-410615 0.0001 1_[+2]_71 chrIV:3135198-3135278 0.0001 11_[+2]_61 chrX:4016337-4016417 0.0001 71_[+2]_1 chrIII:931564-931644 0.0001 36_[+2]_36 chrIII:13717686-13717766 0.00013 59_[+2]_13 chrI:7550356-7550436 0.00013 22_[+2]_50 chrI:1651333-1651413 0.00013 36_[+2]_36 chrX:9932492-9932572 0.00013 26_[+2]_46 chrI:7712818-7712898 0.00013 27_[+2]_45 chrI:9807331-9807411 0.00013 27_[+2]_45 chrII:11676104-11676184 0.00013 34_[+2]_38 chrX:12407398-12407478 0.00013 62_[+2]_10 chrI:7954910-7954990 0.00016 49_[+2]_23 chrII:3521494-3521574 0.00019 68_[+2]_4 chrX:3348033-3348113 0.00019 29_[+2]_43 chrIII:8250398-8250478 0.00019 27_[+2]_45 chrX:9338004-9338084 0.00024 63_[+2]_9 chrIV:11522790-11522870 0.00026 7_[+2]_65 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGWGWGWG MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AGWGWGWG width=8 seqs=39 chrX:13945667-13945747 ( 38) AGTGAGTG 1 chrII:10169569-10169649 ( 70) AGTGTGTG 1 chrII:11635182-11635262 ( 71) AGTGAGTG 1 chrIII:3916775-3916855 ( 30) AGTGTGTG 1 chrI:14731709-14731789 ( 17) AGTGAGTG 1 chrIII:6137597-6137677 ( 16) AGTGTGTG 1 chrI:11323339-11323419 ( 16) AGTGTGTG 1 chrI:4633643-4633723 ( 45) AGTGTGTG 1 chrII:6347918-6347998 ( 6) AGTGAGAG 1 chrIII:7642172-7642252 ( 19) AGTGAGAG 1 chrV:13393371-13393451 ( 45) AGTGAGAG 1 chrI:3648103-3648183 ( 9) AGTGAGAG 1 chrI:3994629-3994709 ( 31) AGTGAGAG 1 chrII:10202462-10202542 ( 34) AGTGAGAG 1 chrIV:16490196-16490276 ( 20) AGAGAGTG 1 chrIV:1388276-1388356 ( 45) AGAGTGTG 1 chrX:8551854-8551934 ( 46) AGAGTGTG 1 chrII:13736404-13736484 ( 58) AGAGTGTG 1 chrI:13475568-13475648 ( 62) AGAGAGAG 1 chrII:12798859-12798939 ( 66) AGAGAGAG 1 chrX:7809710-7809790 ( 7) AGAGAGAG 1 chrIV:410535-410615 ( 2) AGAGAGAG 1 chrIV:3135198-3135278 ( 12) AGAGTGAG 1 chrX:4016337-4016417 ( 72) AGAGAGAG 1 chrIII:931564-931644 ( 37) AGAGAGAG 1 chrIII:13717686-13717766 ( 60) TGTGTGTG 1 chrI:7550356-7550436 ( 23) TGTGTGTG 1 chrI:1651333-1651413 ( 37) TGTGTGTG 1 chrX:9932492-9932572 ( 27) TGTGTGTG 1 chrI:7712818-7712898 ( 28) TGTGTGTG 1 chrI:9807331-9807411 ( 28) TGTGTGTG 1 chrII:11676104-11676184 ( 35) TGTGTGTG 1 chrX:12407398-12407478 ( 63) TGTGTGTG 1 chrI:7954910-7954990 ( 50) TGTGAGAG 1 chrII:3521494-3521574 ( 69) AGTGTGCG 1 chrX:3348033-3348113 ( 30) AGTGTGCG 1 chrIII:8250398-8250478 ( 28) AGTGTGCG 1 chrX:9338004-9338084 ( 64) TGAGAGAG 1 chrIV:11522790-11522870 ( 8) AGAGAGCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGWGWGWG MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.3267 E= 2.2e-007 168 -1193 -1193 1 -1193 -1193 202 -1193 52 -1193 -1193 139 -1193 -1193 202 -1193 107 -1193 -1193 101 -1193 -1193 202 -1193 73 -137 -1193 101 -1193 -1193 202 -1193 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGWGWGWG MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 39 E= 2.2e-007 0.743590 0.000000 0.000000 0.256410 0.000000 0.000000 1.000000 0.000000 0.333333 0.000000 0.000000 0.666667 0.000000 0.000000 1.000000 0.000000 0.487179 0.000000 0.000000 0.512821 0.000000 0.000000 1.000000 0.000000 0.384615 0.102564 0.000000 0.512821 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGWGWGWG MEME-2 regular expression -------------------------------------------------------------------------------- [AT]G[TA]G[TA]G[TA]G -------------------------------------------------------------------------------- Time 8.78 secs. ******************************************************************************** ******************************************************************************** MOTIF TYTCTCTC MEME-3 width = 8 sites = 45 llr = 350 E-value = 5.0e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif TYTCTCTC MEME-3 Description -------------------------------------------------------------------------------- Simplified A 1:::1::: pos.-specific C :4:919:8 probability G ::::1::: matrix T 96a171a2 bits 2.1 1.9 * * 1.7 * * * 1.5 * * ** Relative 1.3 * ** ** Entropy 1.1 **** *** (11.2 bits) 0.8 **** *** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TTTCTCTC consensus C T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TYTCTCTC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrV:6879627-6879707 33 2.01e-05 GGGGGCCCTC TTTCTCTC TCGGTACCCT chrX:13950689-13950769 34 2.01e-05 ACTCCGCGCG TTTCTCTC CCTTTCTCTC chrIV:132271-132351 3 2.01e-05 TC TTTCTCTC CATGTGCTCC chrIV:8629887-8629967 64 2.01e-05 TTTTTTCCTT TTTCTCTC TTTTCCTGA chrI:14181299-14181379 16 2.01e-05 TTTATTCATA TTTCTCTC CAGCCCGCCG chrII:10384844-10384924 24 2.01e-05 ctcttctctc tttctctc tctgtttcta chrX:10435690-10435770 68 2.01e-05 CGGGACTCTT TTTCTCTC TTCCT chrII:66428-66508 68 2.01e-05 ATACTCTTGT TTTCTCTC GGTCT chrI:933477-933557 34 2.01e-05 ACCAATTATC TTTCTCTC TGtggcttcc chrIV:7402295-7402375 15 4.09e-05 GCATCGGAGC TCTCTCTC GTTCTCTGAA chrII:11635911-11635991 44 4.09e-05 tctcgttgac tctctctc tctctcagtc chrIII:9817348-9817428 54 4.09e-05 TAGGATACAC TCTCTCTC ATGCTGTCCA chrI:7195018-7195098 9 4.09e-05 CACAACCA TCTCTCTC TACCTCCTGC chrV:4499235-4499315 24 4.09e-05 CGCAtcgctc tctctctc actcactcct chrIII:3271766-3271846 9 4.09e-05 GAGACctc tctctctc tctcctgcca chrIII:11243630-11243710 52 6.02e-05 CGTCCGCAGG TTTCTCTT CGCTTACACC chrX:10026417-10026497 40 6.02e-05 TCTTCTCCTC TTTCTCTT ACTCCCGCGA chrV:6246707-6246787 39 6.02e-05 GCCGCCTCGT TTTCTCTT GCGTCTCGTG chrX:13781609-13781689 14 7.85e-05 TAGTGTTGCA TTTCACTC GCTATCGCCG chrX:13945667-13945747 22 9.85e-05 CACTGCTTTA TCTCTCTT CTTGCCCCAG chrI:11505487-11505567 10 1.18e-04 GTCTCTTCT TTTTTCTC AACGCCGTAA chrI:10469056-10469136 29 1.18e-04 CCAAACCCTA TTTTTCTC GAAGAAAACG chrII:11634460-11634540 23 1.39e-04 TTCATCATCT TTTCCCTC CAAAACAGCG chrX:7809710-7809790 30 1.39e-04 TTTTCACCCT TTTCCCTC GTGTTTACTA chrI:1271165-1271245 43 1.39e-04 GAGGATCCGC TTTCCCTC TTCTCCCGCC chrV:53434-53514 27 1.96e-04 ttcctacatt tctcactc acacgtgttt chrX:11262447-11262527 25 1.96e-04 CATCCCACAA TTTCTTTC CAACTGAATG chrX:4389066-4389146 8 1.96e-04 CGTCTCT TCTCACTC TCTGCTCTCT chrIV:3232965-3233045 2 1.96e-04 c tctcactc CGCGCGCTCA chrIII:9104174-9104254 30 1.96e-04 TTGCAAAAAA TTTCGCTC CCGGGTGGGC chrV:12331954-12332034 8 1.96e-04 AAAAAAG TTTCGCTC CCGGGTGGGC chrI:9807331-9807411 60 1.96e-04 TTTTCACACT TTTCGCTC TTTTATGGTG chrV:12465495-12465575 40 2.35e-04 AGAGCACACT ATTCTCTC TGGACTCTCT chrII:7676586-7676666 61 2.35e-04 Ccttcttctt attctctc acatcttctt chrIII:10094668-10094748 42 2.74e-04 GTACTACCAC TCTCCCTC CATCCGTCCG chrI:14721592-14721672 72 2.93e-04 GTTGCCGTTA TTTTTCTT T chrX:4016337-4016417 14 2.93e-04 gcttcatctt tttttctt ctccttctct chrIII:344118-344198 33 2.93e-04 TGCTAAATAA TTTTTCTT GGGTCTGCTA chrV:6880813-6880893 50 2.93e-04 CTTCTACGTC TTTTTCTT CTTGTCCTCC chrX:9338004-9338084 41 3.33e-04 TTCCGCTCGC TCTCTTTC TTTTGTGGTG chrI:9077416-9077496 9 3.33e-04 ACGCGTAG TCTCTTTC GCACGCAACT chrI:4320852-4320932 20 3.72e-04 AACACATAGT ACTCTCTC CCCTTCTTAT chrIII:13717686-13717766 25 4.27e-04 TGTGTCTGCG TCTCACTT CTTCATCGGT chrX:4444267-4444347 68 4.27e-04 GCATGGGAAG TTTCTTTT TGTTT chrIII:2576804-2576884 39 4.27e-04 TGTGTTTCTG TCTCACTT GCCGACTCAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TYTCTCTC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:6879627-6879707 2e-05 32_[+3]_40 chrX:13950689-13950769 2e-05 33_[+3]_39 chrIV:132271-132351 2e-05 2_[+3]_70 chrIV:8629887-8629967 2e-05 63_[+3]_9 chrI:14181299-14181379 2e-05 15_[+3]_57 chrII:10384844-10384924 2e-05 23_[+3]_49 chrX:10435690-10435770 2e-05 67_[+3]_5 chrII:66428-66508 2e-05 67_[+3]_5 chrI:933477-933557 2e-05 33_[+3]_39 chrIV:7402295-7402375 4.1e-05 14_[+3]_58 chrII:11635911-11635991 4.1e-05 43_[+3]_29 chrIII:9817348-9817428 4.1e-05 53_[+3]_19 chrI:7195018-7195098 4.1e-05 8_[+3]_64 chrV:4499235-4499315 4.1e-05 23_[+3]_49 chrIII:3271766-3271846 4.1e-05 8_[+3]_64 chrIII:11243630-11243710 6e-05 51_[+3]_21 chrX:10026417-10026497 6e-05 39_[+3]_33 chrV:6246707-6246787 6e-05 38_[+3]_34 chrX:13781609-13781689 7.8e-05 13_[+3]_59 chrX:13945667-13945747 9.9e-05 21_[+3]_51 chrI:11505487-11505567 0.00012 9_[+3]_63 chrI:10469056-10469136 0.00012 28_[+3]_44 chrII:11634460-11634540 0.00014 22_[+3]_50 chrX:7809710-7809790 0.00014 29_[+3]_43 chrI:1271165-1271245 0.00014 42_[+3]_30 chrV:53434-53514 0.0002 26_[+3]_46 chrX:11262447-11262527 0.0002 24_[+3]_48 chrX:4389066-4389146 0.0002 7_[+3]_65 chrIV:3232965-3233045 0.0002 1_[+3]_71 chrIII:9104174-9104254 0.0002 29_[+3]_43 chrV:12331954-12332034 0.0002 7_[+3]_65 chrI:9807331-9807411 0.0002 59_[+3]_13 chrV:12465495-12465575 0.00023 39_[+3]_33 chrII:7676586-7676666 0.00023 60_[+3]_12 chrIII:10094668-10094748 0.00027 41_[+3]_31 chrI:14721592-14721672 0.00029 71_[+3]_1 chrX:4016337-4016417 0.00029 13_[+3]_59 chrIII:344118-344198 0.00029 32_[+3]_40 chrV:6880813-6880893 0.00029 49_[+3]_23 chrX:9338004-9338084 0.00033 40_[+3]_32 chrI:9077416-9077496 0.00033 8_[+3]_64 chrI:4320852-4320932 0.00037 19_[+3]_53 chrIII:13717686-13717766 0.00043 24_[+3]_48 chrX:4444267-4444347 0.00043 67_[+3]_5 chrIII:2576804-2576884 0.00043 38_[+3]_34 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TYTCTCTC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TYTCTCTC width=8 seqs=45 chrV:6879627-6879707 ( 33) TTTCTCTC 1 chrX:13950689-13950769 ( 34) TTTCTCTC 1 chrIV:132271-132351 ( 3) TTTCTCTC 1 chrIV:8629887-8629967 ( 64) TTTCTCTC 1 chrI:14181299-14181379 ( 16) TTTCTCTC 1 chrII:10384844-10384924 ( 24) TTTCTCTC 1 chrX:10435690-10435770 ( 68) TTTCTCTC 1 chrII:66428-66508 ( 68) TTTCTCTC 1 chrI:933477-933557 ( 34) TTTCTCTC 1 chrIV:7402295-7402375 ( 15) TCTCTCTC 1 chrII:11635911-11635991 ( 44) TCTCTCTC 1 chrIII:9817348-9817428 ( 54) TCTCTCTC 1 chrI:7195018-7195098 ( 9) TCTCTCTC 1 chrV:4499235-4499315 ( 24) TCTCTCTC 1 chrIII:3271766-3271846 ( 9) TCTCTCTC 1 chrIII:11243630-11243710 ( 52) TTTCTCTT 1 chrX:10026417-10026497 ( 40) TTTCTCTT 1 chrV:6246707-6246787 ( 39) TTTCTCTT 1 chrX:13781609-13781689 ( 14) TTTCACTC 1 chrX:13945667-13945747 ( 22) TCTCTCTT 1 chrI:11505487-11505567 ( 10) TTTTTCTC 1 chrI:10469056-10469136 ( 29) TTTTTCTC 1 chrII:11634460-11634540 ( 23) TTTCCCTC 1 chrX:7809710-7809790 ( 30) TTTCCCTC 1 chrI:1271165-1271245 ( 43) TTTCCCTC 1 chrV:53434-53514 ( 27) TCTCACTC 1 chrX:11262447-11262527 ( 25) TTTCTTTC 1 chrX:4389066-4389146 ( 8) TCTCACTC 1 chrIV:3232965-3233045 ( 2) TCTCACTC 1 chrIII:9104174-9104254 ( 30) TTTCGCTC 1 chrV:12331954-12332034 ( 8) TTTCGCTC 1 chrI:9807331-9807411 ( 60) TTTCGCTC 1 chrV:12465495-12465575 ( 40) ATTCTCTC 1 chrII:7676586-7676666 ( 61) ATTCTCTC 1 chrIII:10094668-10094748 ( 42) TCTCCCTC 1 chrI:14721592-14721672 ( 72) TTTTTCTT 1 chrX:4016337-4016417 ( 14) TTTTTCTT 1 chrIII:344118-344198 ( 33) TTTTTCTT 1 chrV:6880813-6880893 ( 50) TTTTTCTT 1 chrX:9338004-9338084 ( 41) TCTCTTTC 1 chrI:9077416-9077496 ( 9) TCTCTTTC 1 chrI:4320852-4320932 ( 20) ACTCTCTC 1 chrIII:13717686-13717766 ( 25) TCTCACTT 1 chrX:4444267-4444347 ( 68) TTTCTTTT 1 chrIII:2576804-2576884 ( 39) TCTCACTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TYTCTCTC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.2095 E= 5.0e-001 -180 -1214 -1214 187 -1214 42 -1214 134 -1214 -1214 -1214 197 -1214 171 -1214 -94 -80 -158 -189 148 -1214 178 -1214 -152 -1214 -1214 -1214 197 -1214 151 -1214 -6 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TYTCTCTC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 45 E= 5.0e-001 0.066667 0.000000 0.000000 0.933333 0.000000 0.355556 0.000000 0.644444 0.000000 0.000000 0.000000 1.000000 0.000000 0.866667 0.000000 0.133333 0.133333 0.088889 0.066667 0.711111 0.000000 0.911111 0.000000 0.088889 0.000000 0.000000 0.000000 1.000000 0.000000 0.755556 0.000000 0.244444 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TYTCTCTC MEME-3 regular expression -------------------------------------------------------------------------------- T[TC]TCTCT[CT] -------------------------------------------------------------------------------- Time 12.40 secs. ******************************************************************************** ******************************************************************************** MOTIF AATYGAAC MEME-4 width = 8 sites = 10 llr = 106 E-value = 1.1e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif AATYGAAC MEME-4 Description -------------------------------------------------------------------------------- Simplified A aa:::aa: pos.-specific C :::6:::a probability G ::::a::: matrix T ::a4:::: bits 2.1 ** *** 1.9 *** **** 1.7 *** **** 1.5 *** **** Relative 1.3 *** **** Entropy 1.1 ******** (15.3 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AATCGAAC consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AATYGAAC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrII:3521494-3521574 6 1.28e-05 GCTGG AATCGAAC CAGCGTCGCC chrX:16928267-16928347 17 1.28e-05 atcgaccggg aatcgaac ccgggccgcc chrII:4942457-4942537 67 1.28e-05 GTGCATTGAG AATCGAAC TGGTGG chrX:10821309-10821389 31 1.28e-05 CCATGCCGGG AATCGAAC CCGGGCCGCG chrX:10197314-10197394 21 1.28e-05 AATTGTTACC AATCGAAC ATCTTTTCTA chrIII:8650376-8650456 18 1.28e-05 CCGAACCGGG AATCGAAC CCGGGACCTC chrIII:4378768-4378848 65 2.51e-05 TTGAGCAATA AATTGAAC AATATTTT chrX:16604675-16604755 58 2.51e-05 CCCGGCCGGG AATTGAAC CCGGGTCTCG chrIII:7199005-7199085 1 2.51e-05 . AATTGAAC CATTGGCCTA chrII:7002991-7003071 15 2.51e-05 AGGTATGGGG AATTGAAC CCCAGCCCTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AATYGAAC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:3521494-3521574 1.3e-05 5_[+4]_67 chrX:16928267-16928347 1.3e-05 16_[+4]_56 chrII:4942457-4942537 1.3e-05 66_[+4]_6 chrX:10821309-10821389 1.3e-05 30_[+4]_42 chrX:10197314-10197394 1.3e-05 20_[+4]_52 chrIII:8650376-8650456 1.3e-05 17_[+4]_55 chrIII:4378768-4378848 2.5e-05 64_[+4]_8 chrX:16604675-16604755 2.5e-05 57_[+4]_15 chrIII:7199005-7199085 2.5e-05 [+4]_72 chrII:7002991-7003071 2.5e-05 14_[+4]_58 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AATYGAAC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AATYGAAC width=8 seqs=10 chrII:3521494-3521574 ( 6) AATCGAAC 1 chrX:16928267-16928347 ( 17) AATCGAAC 1 chrII:4942457-4942537 ( 67) AATCGAAC 1 chrX:10821309-10821389 ( 31) AATCGAAC 1 chrX:10197314-10197394 ( 21) AATCGAAC 1 chrIII:8650376-8650456 ( 18) AATCGAAC 1 chrIII:4378768-4378848 ( 65) AATTGAAC 1 chrX:16604675-16604755 ( 58) AATTGAAC 1 chrIII:7199005-7199085 ( 1) AATTGAAC 1 chrII:7002991-7003071 ( 15) AATTGAAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AATYGAAC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.2669 E= 1.1e+002 210 -997 -997 -997 210 -997 -997 -997 -997 -997 -997 197 -997 118 -997 65 -997 -997 202 -997 210 -997 -997 -997 210 -997 -997 -997 -997 191 -997 -997 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AATYGAAC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 10 E= 1.1e+002 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.600000 0.000000 0.400000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AATYGAAC MEME-4 regular expression -------------------------------------------------------------------------------- AAT[CT]GAAC -------------------------------------------------------------------------------- Time 16.18 secs. ******************************************************************************** ******************************************************************************** MOTIF TAGCTCAG MEME-5 width = 8 sites = 9 llr = 95 E-value = 2.8e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif TAGCTCAG MEME-5 Description -------------------------------------------------------------------------------- Simplified A :a::::a: pos.-specific C :::a:a:: probability G ::a:2::a matrix T a:::8::: bits 2.1 ** ** 1.9 **** *** 1.7 **** *** 1.5 **** *** Relative 1.3 ******** Entropy 1.1 ******** (15.3 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TAGCTCAG consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAGCTCAG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIII:11792784-11792864 5 1.50e-05 CGTA TAGCTCAG TGGCAGAGCG chrI:11505487-11505567 71 1.50e-05 ATCGGGGGTA TAGCTCAG TG chrX:13781609-13781689 38 1.50e-05 GCCGCCCGGT TAGCTCAG TCGGTAGAGC chrIV:16399185-16399265 6 1.50e-05 GGGTA TAGCTCAG TGGTAGAGCG chrIV:16398373-16398453 18 1.50e-05 TGCGGGGGTA TAGCTCAG TGGTAGAGCG chrI:6136534-6136614 70 1.50e-05 GCCGCCCGGT TAGCTCAG TCG chrII:7001569-7001649 65 1.50e-05 GTTACCTGTG TAGCTCAG GGGTAGAG chrIII:8106620-8106700 40 2.95e-05 GCCGCTTCCG TAGCGCAG TAGGCAGCGC chrIII:1122426-1122506 15 2.95e-05 TGTTGCCGTT TAGCGCAG GCGGGAGTGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAGCTCAG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:11792784-11792864 1.5e-05 4_[+5]_68 chrI:11505487-11505567 1.5e-05 70_[+5]_2 chrX:13781609-13781689 1.5e-05 37_[+5]_35 chrIV:16399185-16399265 1.5e-05 5_[+5]_67 chrIV:16398373-16398453 1.5e-05 17_[+5]_55 chrI:6136534-6136614 1.5e-05 69_[+5]_3 chrII:7001569-7001649 1.5e-05 64_[+5]_8 chrIII:8106620-8106700 3e-05 39_[+5]_33 chrIII:1122426-1122506 3e-05 14_[+5]_58 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAGCTCAG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TAGCTCAG width=8 seqs=9 chrIII:11792784-11792864 ( 5) TAGCTCAG 1 chrI:11505487-11505567 ( 71) TAGCTCAG 1 chrX:13781609-13781689 ( 38) TAGCTCAG 1 chrIV:16399185-16399265 ( 6) TAGCTCAG 1 chrIV:16398373-16398453 ( 18) TAGCTCAG 1 chrI:6136534-6136614 ( 70) TAGCTCAG 1 chrII:7001569-7001649 ( 65) TAGCTCAG 1 chrIII:8106620-8106700 ( 40) TAGCGCAG 1 chrIII:1122426-1122506 ( 15) TAGCGCAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAGCTCAG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.1193 E= 2.8e+003 -982 -982 -982 197 210 -982 -982 -982 -982 -982 202 -982 -982 191 -982 -982 -982 -982 -15 161 -982 191 -982 -982 210 -982 -982 -982 -982 -982 202 -982 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAGCTCAG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 9 E= 2.8e+003 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.222222 0.777778 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAGCTCAG MEME-5 regular expression -------------------------------------------------------------------------------- TAGC[TG]CAG -------------------------------------------------------------------------------- Time 19.64 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:6926180-6926260 2.53e-01 80 chrIV:6704761-6704841 7.97e-01 80 chrX:5056378-5056458 6.78e-01 80 chrII:14248251-14248331 5.62e-01 80 chrII:14249644-14249724 4.47e-01 80 chrX:12205672-12205752 4.74e-01 80 chrI:933477-933557 1.23e-01 33_[+3(2.01e-05)]_39 chrX:12452276-12452356 6.71e-01 80 chrIV:11522790-11522870 3.00e-01 80 chrIII:931564-931644 3.73e-01 36_[+2(9.97e-05)]_36 chrIV:9048255-9048335 7.06e-01 80 chrIV:11071074-11071154 9.91e-01 80 chrII:2570701-2570781 1.11e-01 26_[+1(2.19e-05)]_46 chrV:12510084-12510164 8.37e-01 80 chrV:3098930-3099010 6.90e-01 80 chrI:10948388-10948468 1.56e-01 80 chrIII:3499975-3500055 2.71e-01 80 chrII:13736404-13736484 9.31e-02 57_[+2(7.71e-05)]_15 chrII:14244672-14244752 8.75e-02 80 chrIV:11524368-11524448 6.77e-01 80 chrV:1821432-1821512 1.95e-01 80 chrX:9999899-9999979 1.96e-01 80 chrI:11609164-11609244 2.34e-01 80 chrII:10744983-10745063 7.13e-01 80 chrX:3969488-3969568 6.69e-01 80 chrV:5284757-5284837 9.70e-01 80 chrX:8156138-8156218 1.80e-01 80 chrV:4648014-4648094 8.24e-01 80 chrIV:16684414-16684494 5.59e-01 80 chrIV:13029908-13029988 7.05e-01 80 chrX:16944151-16944231 8.21e-03 31_[+1(2.19e-05)]_41 chrII:10202462-10202542 8.11e-02 33_[+2(5.22e-05)]_39 chrI:3994629-3994709 3.38e-03 30_[+2(5.22e-05)]_27_[+1(5.57e-05)]_\ 7 chrII:9740772-9740852 5.10e-02 18_[+1(4.24e-05)]_54 chrV:6880813-6880893 6.47e-01 80 chrX:1018483-1018563 1.48e-01 80 chrX:3914468-3914548 1.24e-01 80 chrI:4320852-4320932 9.78e-02 80 chrIII:178107-178187 1.16e-01 7_[+4(4.83e-05)]_65 chrII:9258490-9258570 3.82e-01 80 chrII:15264785-15264865 3.58e-01 80 chrI:9969527-9969607 8.25e-01 80 chrI:9249392-9249472 8.00e-01 80 chrII:66428-66508 9.01e-02 67_[+3(2.01e-05)]_5 chrX:12407398-12407478 5.66e-02 80 chrIV:6645978-6646058 6.20e-01 80 chrIII:2576804-2576884 2.48e-02 14_[+4(8.38e-05)]_58 chrV:7230997-7231077 4.40e-01 80 chrI:9855601-9855681 1.67e-01 80 chrIII:3664393-3664473 9.56e-01 80 chrI:3334553-3334633 2.83e-02 80 chrII:15218038-15218118 9.28e-01 80 chrII:13984942-13985022 8.94e-01 80 chrII:7001569-7001649 2.17e-02 64_[+5(1.50e-05)]_8 chrI:3648103-3648183 9.44e-02 8_[+2(5.22e-05)]_2_[+2(9.97e-05)]_\ 54 chrI:4633643-4633723 2.62e-03 44_[+2(2.73e-05)]_8_[+1(2.19e-05)]_\ 12 chrX:3694358-3694438 1.46e-01 71_[+1(9.32e-05)]_1 chrX:9296702-9296782 8.85e-01 80 chrX:2885438-2885518 2.79e-01 80 chrII:11676104-11676184 7.19e-02 80 chrIII:8650376-8650456 3.61e-02 17_[+4(1.28e-05)]_55 chrX:10900222-10900302 6.77e-02 80 chrIV:7486363-7486443 8.33e-01 80 chrX:10197314-10197394 1.18e-02 20_[+4(1.28e-05)]_52 chrV:7979036-7979116 7.70e-02 80 chrX:10435690-10435770 7.79e-03 67_[+3(2.01e-05)]_5 chrIII:3271766-3271846 2.78e-03 6_[+3(4.09e-05)]_58_[+3(4.09e-05)] chrIV:4781286-4781366 2.81e-01 80 chrIII:344118-344198 3.42e-01 80 chrII:9619605-9619685 8.49e-02 80 chrI:9807331-9807411 4.07e-03 80 chrI:7712818-7712898 3.85e-01 80 chrV:6709221-6709301 7.22e-01 80 chrV:13393371-13393451 3.07e-02 44_[+2(5.22e-05)]_28 chrX:14908487-14908567 5.05e-01 80 chrII:4238044-4238124 6.37e-01 80 chrIV:2033185-2033265 7.98e-01 80 chrI:6136534-6136614 4.19e-03 69_[+5(1.50e-05)]_3 chrV:14855784-14855864 4.90e-01 80 chrX:17610599-17610679 1.87e-01 80 chrX:15310449-15310529 9.29e-01 80 chrX:4016337-4016417 5.38e-03 71_[+2(9.97e-05)]_1 chrV:12331954-12332034 2.30e-01 80 chrII:10384844-10384924 9.22e-02 23_[+3(2.01e-05)]_14_[+3(6.02e-05)]_\ 27 chrIII:8971792-8971872 2.63e-01 80 chrII:18952-19032 4.83e-01 80 chrIII:1824688-1824768 4.33e-01 80 chrX:13584156-13584236 7.82e-01 80 chrV:14876369-14876449 1.17e-02 8_[+1(2.19e-05)]_64 chrIII:7642172-7642252 1.21e-01 18_[+2(5.22e-05)]_54 chrX:5407429-5407509 7.47e-01 80 chrIII:13061869-13061949 9.73e-01 80 chrIV:11310794-11310874 3.66e-02 80 chrI:7548332-7548412 2.88e-01 37_[+1(9.32e-05)]_2_[+1(9.32e-05)]_\ 9_[+1(9.32e-05)]_8 chrIII:10094668-10094748 1.12e-01 80 chrI:14181299-14181379 3.54e-02 15_[+3(2.01e-05)]_57 chrX:10188659-10188739 4.08e-02 20_[+1(4.24e-05)]_52 chrI:9077416-9077496 2.29e-01 80 chrV:4499235-4499315 2.55e-02 21_[+3(4.09e-05)]_51 chrV:19343488-19343568 9.13e-01 80 chrX:12890300-12890380 3.45e-01 80 chrIV:3135198-3135278 7.98e-03 11_[+2(9.97e-05)]_31_[+1(9.32e-05)]_\ 22 chrI:1741039-1741119 6.64e-02 31_[+1(4.24e-05)]_41 chrI:10026063-10026143 7.83e-02 80 chrII:14250324-14250404 1.35e-01 80 chrIII:535315-535395 9.99e-01 80 chrI:9268900-9268980 2.14e-01 80 chrIII:9104174-9104254 9.48e-04 21_[+1(2.19e-05)]_51 chrV:1154045-1154125 5.90e-01 80 chrV:9583094-9583174 1.03e-01 39_[+1(5.57e-05)]_33 chrI:11323339-11323419 1.13e-02 15_[+2(2.73e-05)]_57 chrIII:6137597-6137677 6.10e-02 15_[+2(2.73e-05)]_57 chrI:7195018-7195098 7.90e-03 8_[+3(4.09e-05)]_11_[+1(5.57e-05)]_\ 45 chrII:6347918-6347998 1.57e-01 5_[+2(5.22e-05)]_67 chrII:7002991-7003071 4.39e-02 14_[+4(2.51e-05)]_58 chrII:7708725-7708805 3.58e-02 14_[+1(1.17e-05)]_58 chrIII:9817348-9817428 7.41e-02 53_[+3(4.09e-05)]_19 chrI:5637889-5637969 6.06e-01 80 chrI:9448166-9448246 9.89e-01 80 chrV:14847426-14847506 6.61e-01 80 chrI:10469056-10469136 2.07e-01 80 chrI:1271165-1271245 2.64e-02 1_[+1(9.32e-05)]_71 chrIV:8629887-8629967 5.28e-02 63_[+3(2.01e-05)]_9 chrIV:13330054-13330134 4.62e-01 80 chrI:9611651-9611731 1.28e-01 8_[+1(5.57e-05)]_64 chrIII:9112707-9112787 2.81e-01 80 chrX:8551854-8551934 6.52e-03 43_[+2(7.71e-05)]_29 chrIII:1122426-1122506 1.15e-01 14_[+5(2.95e-05)]_58 chrII:7676586-7676666 1.54e-01 80 chrIV:1108176-1108256 5.19e-01 80 chrI:3873927-3874007 7.79e-01 80 chrII:5017402-5017482 4.43e-01 80 chrIII:5769897-5769977 7.04e-01 80 chrIII:12616199-12616279 9.32e-01 80 chrIV:132271-132351 1.43e-02 2_[+3(2.01e-05)]_70 chrIV:3232965-3233045 4.75e-01 80 chrI:14731709-14731789 1.72e-01 16_[+2(2.73e-05)]_56 chrX:9932492-9932572 3.42e-01 80 chrIII:8250398-8250478 1.39e-01 80 chrIV:16398373-16398453 3.97e-02 17_[+5(1.50e-05)]_55 chrI:13310396-13310476 7.60e-01 80 chrIII:3916775-3916855 4.71e-04 29_[+2(2.73e-05)]_10_[+1(9.32e-05)]_\ 25 chrIII:433092-433172 1.95e-01 2_[+3(4.09e-05)]_[+3(4.09e-05)]_\ [+3(4.09e-05)]_[+3(4.09e-05)]_[+3(4.09e-05)]_[+3(4.09e-05)]_30 chrIII:10123735-10123815 6.63e-01 80 chrV:14038516-14038596 3.23e-01 80 chrV:6785252-6785332 8.21e-01 80 chrI:5164956-5165036 5.81e-01 80 chrX:5336686-5336766 3.53e-01 80 chrX:5686233-5686313 7.48e-01 80 chrI:1651333-1651413 2.59e-01 80 chrV:6246707-6246787 2.28e-01 38_[+3(6.02e-05)]_34 chrI:7550356-7550436 2.43e-01 80 chrIII:3175137-3175217 7.17e-01 80 chrII:14635354-14635434 9.23e-01 80 chrIV:1388276-1388356 1.57e-01 44_[+2(7.71e-05)]_28 chrX:993189-993269 3.59e-01 80 chrV:13176509-13176589 7.42e-01 80 chrIV:410535-410615 1.11e-02 1_[+2(9.97e-05)]_71 chrX:10821309-10821389 2.01e-03 5_[+1(4.24e-05)]_17_[+4(1.28e-05)]_\ 42 chrII:12339253-12339333 5.32e-01 80 chrI:9141732-9141812 1.34e-01 80 chrIV:16399185-16399265 3.89e-02 5_[+5(1.50e-05)]_67 chrII:11635911-11635991 1.56e-02 43_[+3(4.09e-05)]_29 chrV:12465495-12465575 5.16e-02 80 chrIII:7729727-7729807 7.12e-01 80 chrX:4389066-4389146 6.47e-02 80 chrI:1435579-1435659 1.00e-01 80 chrV:11029437-11029517 1.46e-01 80 chrII:5772889-5772969 1.29e-01 80 chrX:14636838-14636918 8.71e-02 80 chrII:4942457-4942537 4.49e-03 66_[+4(1.28e-05)]_6 chrX:3348033-3348113 1.91e-01 80 chrV:19723031-19723111 6.74e-01 80 chrI:4175893-4175973 1.20e-01 5_[+1(2.19e-05)]_67 chrX:3994609-3994689 6.08e-01 80 chrX:16928267-16928347 1.27e-01 16_[+4(1.28e-05)]_56 chrX:10524629-10524709 8.96e-01 80 chrIII:7199005-7199085 9.25e-03 [+4(2.51e-05)]_72 chrI:1175811-1175891 1.57e-01 80 chrIV:7402295-7402375 1.88e-01 14_[+3(4.09e-05)]_58 chrII:11635182-11635262 1.08e-01 70_[+2(2.73e-05)]_2 chrX:6220119-6220199 2.96e-01 80 chrX:14115633-14115713 1.50e-01 80 chrX:13969485-13969565 2.50e-01 80 chrX:10026417-10026497 3.25e-01 39_[+3(6.02e-05)]_33 chrX:4444267-4444347 5.48e-01 80 chrIII:8106620-8106700 1.71e-01 39_[+5(2.95e-05)]_33 chrX:7809710-7809790 1.71e-02 6_[+2(9.97e-05)]_66 chrX:15173667-15173747 3.07e-01 80 chrII:11634460-11634540 7.33e-02 80 chrIV:842798-842878 9.09e-01 80 chrIII:6805551-6805631 6.71e-01 80 chrIII:5503350-5503430 2.69e-02 32_[+1(3.28e-05)]_40 chrII:12042369-12042449 8.90e-01 80 chrII:13976320-13976400 7.67e-01 80 chrX:16604675-16604755 3.64e-03 57_[+4(2.51e-05)]_15 chrII:9054730-9054810 6.55e-02 2_[+1(4.24e-05)]_28_[+1(9.32e-05)]_\ 34 chrI:3636540-3636620 7.30e-02 23_[+1(2.19e-05)]_49 chrV:4731530-4731610 1.01e-01 80 chrIV:1738376-1738456 2.99e-01 80 chrIV:2704148-2704228 7.07e-01 80 chrX:14480430-14480510 3.89e-01 80 chrIII:4426849-4426929 2.33e-02 1_[+1(4.24e-05)]_71 chrI:1575721-1575801 7.54e-01 80 chrX:8995603-8995683 7.07e-01 80 chrII:14358109-14358189 2.90e-01 80 chrIV:16865664-16865744 7.43e-01 80 chrX:2432645-2432725 1.06e-02 53_[+1(2.19e-05)]_19 chrX:11262447-11262527 1.11e-02 80 chrIII:13717686-13717766 6.88e-02 80 chrII:10169569-10169649 1.81e-01 26_[+2(2.73e-05)]_[+2(7.71e-05)]_12_\ [+2(2.73e-05)]_7_[+2(2.73e-05)]_3 chrI:10642478-10642558 6.29e-01 80 chrIV:4650749-4650829 7.14e-01 80 chrIV:16490196-16490276 8.85e-02 11_[+2(9.97e-05)]_[+2(7.71e-05)]_53 chrX:9338004-9338084 9.46e-03 80 chrX:13781609-13781689 5.55e-03 13_[+3(7.85e-05)]_16_[+5(1.50e-05)]_\ 35 chrII:4955529-4955609 4.34e-01 80 chrV:16552921-16553001 4.71e-02 80 chrI:7954910-7954990 4.34e-03 80 chrIII:5308444-5308524 5.79e-01 80 chrII:12798859-12798939 2.32e-01 65_[+2(9.97e-05)]_7 chrI:11505487-11505567 9.34e-03 70_[+5(1.50e-05)]_2 chrIII:4378768-4378848 3.21e-02 64_[+4(2.51e-05)]_8 chrII:3521494-3521574 9.39e-03 5_[+4(1.28e-05)]_67 chrII:8747434-8747514 7.38e-01 80 chrX:13950689-13950769 4.65e-02 33_[+3(2.01e-05)]_2_[+3(2.01e-05)]_\ 29 chrIII:11243630-11243710 8.63e-02 51_[+3(6.02e-05)]_21 chrX:11546770-11546850 1.76e-02 80 chrII:6783008-6783088 7.30e-02 80 chrV:13396520-13396600 9.03e-02 80 chrIII:11792784-11792864 1.12e-02 4_[+5(1.50e-05)]_68 chrII:11157821-11157901 5.33e-01 80 chrIII:3505319-3505399 3.24e-01 80 chrII:6248626-6248706 5.64e-02 80 chrIII:10432235-10432315 1.76e-01 80 chrV:53434-53514 1.51e-01 80 chrV:5592471-5592551 2.22e-01 80 chrIV:16491726-16491806 1.52e-01 80 chrII:6913465-6913545 2.32e-01 80 chrX:13945667-13945747 8.32e-03 21_[+3(9.85e-05)]_8_[+2(2.73e-05)]_\ 35 chrV:12780413-12780493 2.08e-01 80 chrX:8386139-8386219 4.18e-01 80 chrV:5917861-5917941 7.08e-01 80 chrX:1319878-1319958 7.45e-01 80 chrII:11634257-11634337 9.92e-03 30_[+1(6.74e-05)]_42 chrIII:8768064-8768144 4.52e-01 80 chrI:13475568-13475648 1.53e-01 61_[+2(9.97e-05)]_11 chrV:6879627-6879707 6.92e-03 32_[+3(2.01e-05)]_40 chrI:14721592-14721672 4.07e-01 80 chrX:1858748-1858828 9.00e-01 80 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n10.farnam.hpc.yale.internal ********************************************************************************