******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/worm/fasta/RankLinear2.0_40/mab-5.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrIII:7816556-7816636 1.0000 80 chrIII:7815126-7815206 1.0000 80 chrI:6506723-6506803 1.0000 80 chrIII:7788559-7788639 1.0000 80 chrIII:7780776-7780856 1.0000 80 chrIII:7814914-7814994 1.0000 80 chrI:2706289-2706369 1.0000 80 chrI:548133-548213 1.0000 80 chrI:5087944-5088024 1.0000 80 chrIII:7778675-7778755 1.0000 80 chrII:9299856-9299936 1.0000 80 chrIII:7815983-7816063 1.0000 80 chrIV:3765590-3765670 1.0000 80 chrV:4491890-4491970 1.0000 80 chrI:9303144-9303224 1.0000 80 chrV:20656777-20656857 1.0000 80 chrIII:4358497-4358577 1.0000 80 chrII:134005-134085 1.0000 80 chrI:4840963-4841043 1.0000 80 chrV:1060624-1060704 1.0000 80 chrX:4266364-4266444 1.0000 80 chrI:11666726-11666806 1.0000 80 chrI:295981-296061 1.0000 80 chrII:2995147-2995227 1.0000 80 chrIII:5210456-5210536 1.0000 80 chrX:10612545-10612625 1.0000 80 chrIV:13721166-13721246 1.0000 80 chrIV:3101373-3101453 1.0000 80 chrV:11307910-11307990 1.0000 80 chrII:5416387-5416467 1.0000 80 chrIV:11779173-11779253 1.0000 80 chrIV:740844-740924 1.0000 80 chrX:9841037-9841117 1.0000 80 chrX:6225065-6225145 1.0000 80 chrIII:7784292-7784372 1.0000 80 chrV:10720448-10720528 1.0000 80 chrIV:5535911-5535991 1.0000 80 chrX:2046263-2046343 1.0000 80 chrIII:3200757-3200837 1.0000 80 chrV:8252715-8252795 1.0000 80 chrI:2703302-2703382 1.0000 80 chrIII:7554836-7554916 1.0000 80 chrI:5776030-5776110 1.0000 80 chrI:7040881-7040961 1.0000 80 chrV:13346011-13346091 1.0000 80 chrII:6486424-6486504 1.0000 80 chrM:505-585 1.0000 80 chrII:5841248-5841328 1.0000 80 chrIII:7790632-7790712 1.0000 80 chrI:1102324-1102404 1.0000 80 chrV:13154316-13154396 1.0000 80 chrII:13004666-13004746 1.0000 80 chrII:9265119-9265199 1.0000 80 chrIII:9084480-9084560 1.0000 80 chrM:13176-13256 1.0000 80 chrIV:12637567-12637647 1.0000 80 chrM:3978-4058 1.0000 80 chrIII:7544342-7544422 1.0000 80 chrX:3455743-3455823 1.0000 80 chrIV:10957761-10957841 1.0000 80 chrIII:8926666-8926746 1.0000 80 chrIII:2132234-2132314 1.0000 80 chrM:10462-10542 1.0000 80 chrII:6825896-6825976 1.0000 80 chrI:435558-435638 1.0000 80 chrV:5995742-5995822 1.0000 80 chrI:9962983-9963063 1.0000 80 chrII:11830806-11830886 1.0000 80 chrI:293191-293271 1.0000 80 chrV:20021561-20021641 1.0000 80 chrIII:11454132-11454212 1.0000 80 chrV:7822842-7822922 1.0000 80 chrI:4431912-4431992 1.0000 80 chrII:14425979-14426059 1.0000 80 chrM:6673-6753 1.0000 80 chrI:11662759-11662839 1.0000 80 chrM:7815-7895 1.0000 80 chrIV:17269928-17270008 1.0000 80 chrM:7605-7685 1.0000 80 chrM:9696-9776 1.0000 80 chrIV:13695860-13695940 1.0000 80 chrII:13799331-13799411 1.0000 80 chrIV:6648714-6648794 1.0000 80 chrII:9308623-9308703 1.0000 80 chrI:4804465-4804545 1.0000 80 chrV:10917539-10917619 1.0000 80 chrII:603145-603225 1.0000 80 chrX:15149064-15149144 1.0000 80 chrII:10203311-10203391 1.0000 80 chrX:6894262-6894342 1.0000 80 chrII:7962320-7962400 1.0000 80 chrX:3689640-3689720 1.0000 80 chrX:9163295-9163375 1.0000 80 chrII:4736848-4736928 1.0000 80 chrII:5223057-5223137 1.0000 80 chrIV:5042048-5042128 1.0000 80 chrM:13601-13681 1.0000 80 chrV:11083881-11083961 1.0000 80 chrI:11105807-11105887 1.0000 80 chrM:2501-2581 1.0000 80 chrIV:13696059-13696139 1.0000 80 chrX:16392244-16392324 1.0000 80 chrV:18581930-18582010 1.0000 80 chrM:2705-2785 1.0000 80 chrI:8761535-8761615 1.0000 80 chrIV:11068436-11068516 1.0000 80 chrIII:3781855-3781935 1.0000 80 chrIV:13682904-13682984 1.0000 80 chrI:10583139-10583219 1.0000 80 chrM:5684-5764 1.0000 80 chrI:5579487-5579567 1.0000 80 chrIV:13826501-13826581 1.0000 80 chrV:10727828-10727908 1.0000 80 chrV:15078750-15078830 1.0000 80 chrIV:1108091-1108171 1.0000 80 chrX:5321240-5321320 1.0000 80 chrV:2672780-2672860 1.0000 80 chrM:6469-6549 1.0000 80 chrX:13329047-13329127 1.0000 80 chrV:9454114-9454194 1.0000 80 chrIV:13699593-13699673 1.0000 80 chrIV:16496632-16496712 1.0000 80 chrV:12222869-12222949 1.0000 80 chrII:9307059-9307139 1.0000 80 chrIV:11572687-11572767 1.0000 80 chrI:434555-434635 1.0000 80 chrIV:15433933-15434013 1.0000 80 chrII:7812410-7812490 1.0000 80 chrI:4224949-4225029 1.0000 80 chrII:2565060-2565140 1.0000 80 chrX:10907605-10907685 1.0000 80 chrM:3692-3772 1.0000 80 chrX:7715599-7715679 1.0000 80 chrII:6841218-6841298 1.0000 80 chrIII:1681121-1681201 1.0000 80 chrIII:6402441-6402521 1.0000 80 chrIII:3783226-3783306 1.0000 80 chrII:3661853-3661933 1.0000 80 chrIV:11480549-11480629 1.0000 80 chrI:2299708-2299788 1.0000 80 chrV:9958806-9958886 1.0000 80 chrIV:13694788-13694868 1.0000 80 chrI:6166739-6166819 1.0000 80 chrI:13495282-13495362 1.0000 80 chrIII:6744756-6744836 1.0000 80 chrI:10598544-10598624 1.0000 80 chrIV:7723750-7723830 1.0000 80 chrM:1317-1397 1.0000 80 chrIII:12688187-12688267 1.0000 80 chrM:11433-11513 1.0000 80 chrIV:1804756-1804836 1.0000 80 chrIII:9987021-9987101 1.0000 80 chrV:4502883-4502963 1.0000 80 chrX:14653591-14653671 1.0000 80 chrIII:12137246-12137326 1.0000 80 chrX:1120596-1120676 1.0000 80 chrM:10975-11055 1.0000 80 chrII:8481264-8481344 1.0000 80 chrIV:9104510-9104590 1.0000 80 chrV:728053-728133 1.0000 80 chrIII:6405349-6405429 1.0000 80 chrI:14862209-14862289 1.0000 80 chrI:3516418-3516498 1.0000 80 chrIV:16498198-16498278 1.0000 80 chrV:18723740-18723820 1.0000 80 chrI:7479432-7479512 1.0000 80 chrV:13176494-13176574 1.0000 80 chrM:12358-12438 1.0000 80 chrIV:3227566-3227646 1.0000 80 chrIII:6078261-6078341 1.0000 80 chrI:14523130-14523210 1.0000 80 chrV:9274361-9274441 1.0000 80 chrI:7129587-7129667 1.0000 80 chrX:8053231-8053311 1.0000 80 chrV:6017758-6017838 1.0000 80 chrIII:3279399-3279479 1.0000 80 chrIII:343843-343923 1.0000 80 chrIV:6646107-6646187 1.0000 80 chrIII:7766089-7766169 1.0000 80 chrIV:17268768-17268848 1.0000 80 chrIII:11938033-11938113 1.0000 80 chrI:6221021-6221101 1.0000 80 chrII:10370927-10371007 1.0000 80 chrM:9155-9235 1.0000 80 chrIV:8947212-8947292 1.0000 80 chrV:773371-773451 1.0000 80 chrX:12690489-12690569 1.0000 80 chrIII:4195852-4195932 1.0000 80 chrV:19897724-19897804 1.0000 80 chrIII:9483706-9483786 1.0000 80 chrX:14487427-14487507 1.0000 80 chrV:14848723-14848803 1.0000 80 chrIV:13704163-13704243 1.0000 80 chrIV:261777-261857 1.0000 80 chrX:3488178-3488258 1.0000 80 chrII:13872669-13872749 1.0000 80 chrII:3482364-3482444 1.0000 80 chrM:4692-4772 1.0000 80 chrII:8747953-8748033 1.0000 80 chrIII:5706360-5706440 1.0000 80 chrI:4974893-4974973 1.0000 80 chrV:1575927-1576007 1.0000 80 chrI:4773065-4773145 1.0000 80 chrM:2288-2368 1.0000 80 chrIII:10432340-10432420 1.0000 80 chrIII:131805-131885 1.0000 80 chrI:7961880-7961960 1.0000 80 chrIII:13061196-13061276 1.0000 80 chrIII:4005573-4005653 1.0000 80 chrII:3956983-3957063 1.0000 80 chrII:7814465-7814545 1.0000 80 chrV:9724257-9724337 1.0000 80 chrI:6238576-6238656 1.0000 80 chrX:10238364-10238444 1.0000 80 chrIII:10526090-10526170 1.0000 80 chrI:6175151-6175231 1.0000 80 chrII:8329122-8329202 1.0000 80 chrX:1103934-1104014 1.0000 80 chrIII:623958-624038 1.0000 80 chrI:9076287-9076367 1.0000 80 chrV:7735044-7735124 1.0000 80 chrI:5244258-5244338 1.0000 80 chrIV:16863630-16863710 1.0000 80 chrI:10197165-10197245 1.0000 80 chrII:13031128-13031208 1.0000 80 chrIII:13256769-13256849 1.0000 80 chrIV:15025542-15025622 1.0000 80 chrX:12184610-12184690 1.0000 80 chrX:1122359-1122439 1.0000 80 chrX:17479774-17479854 1.0000 80 chrI:1175841-1175921 1.0000 80 chrIV:14464184-14464264 1.0000 80 chrIII:2578717-2578797 1.0000 80 chrIII:8319277-8319357 1.0000 80 chrII:3808349-3808429 1.0000 80 chrIII:4542415-4542495 1.0000 80 chrI:9077428-9077508 1.0000 80 chrII:3502777-3502857 1.0000 80 chrV:18079310-18079390 1.0000 80 chrIII:10096731-10096811 1.0000 80 chrV:7728087-7728167 1.0000 80 chrIII:4171099-4171179 1.0000 80 chrX:13519294-13519374 1.0000 80 chrII:4238071-4238151 1.0000 80 chrIII:8447125-8447205 1.0000 80 chrX:14841195-14841275 1.0000 80 chrV:4731558-4731638 1.0000 80 chrII:7857563-7857643 1.0000 80 chrIV:14612684-14612764 1.0000 80 chrX:12693563-12693643 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/worm/inference_raw/MEME/RankLinear2.0_40_mab-5/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/worm/fasta/RankLinear2.0_40/mab-5.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.293 C 0.197 G 0.203 T 0.307 Background letter frequencies (from file dataset with add-one prior applied): A 0.293 C 0.197 G 0.203 T 0.307 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GAGAGARR MEME-1 width = 8 sites = 63 llr = 473 E-value = 1.2e-008 ******************************************************************************** -------------------------------------------------------------------------------- Motif GAGAGARR MEME-1 Description -------------------------------------------------------------------------------- Simplified A :8:93946 pos.-specific C ::::::1: probability G a:a17153 matrix T :2:::::: bits 2.3 * 2.1 * * 1.9 * * 1.6 * * Relative 1.4 * ** * Entropy 1.2 ****** (10.8 bits) 0.9 ****** * 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GAGAGAGA consensus A AG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGAGARR MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIV:14612684-14612764 69 1.25e-05 AATTgagaga gagagaga gaga chrI:10197165-10197245 7 1.25e-05 CCCGAT GAGAGAGA AAGTATGGAA chrI:9076287-9076367 4 1.25e-05 agt gagagaga tacagagaga chrI:6238576-6238656 25 1.25e-05 GTGCTGAATT GAGAGAGA TTTAGGCAAA chrIII:11938033-11938113 17 1.25e-05 aagagacgca gagagaga gTCGACCCAT chrIII:3279399-3279479 67 1.25e-05 GGTTGTCATG GAGAGAGA TATTAG chrIII:6078261-6078341 49 1.25e-05 TTGAATgaca gagagaga gagagagtaa chrIV:16498198-16498278 45 1.25e-05 GGCGGGAAAa gagagaga gagagagaga chrV:728053-728133 64 1.25e-05 ATCATTAGGA GAGAGAGA CAATTGATG chrI:13495282-13495362 16 1.25e-05 AAGCTTCTAa gagagaga ggggagagac chrIV:13704163-13704243 9 3.93e-05 GATGAGTG GAGAGAAA CCAACGTATG chrII:4736848-4736928 52 3.93e-05 AGCATGGCGT GAGAGAAA TAAAGAATTT chrIV:10957761-10957841 11 3.93e-05 ACATGGAACA GAGAGAAA AGAAGATAAA chrI:4773065-4773145 12 5.18e-05 AAAATGAAAT GAGAGAAG AATGTGAAGT chrI:7479432-7479512 67 5.18e-05 ATGTTTGATT GAGAGAAG AGAGGA chrV:2672780-2672860 55 5.18e-05 TTACGTGCAA GAGAGAAG AGATTTAGAG chrIV:13682904-13682984 63 5.18e-05 ATCTCTCACC GAGAGAAG ATATTATTTG chrIII:4171099-4171179 17 6.98e-05 GGAAATGTCG GAGAAAGA TTTGCGGTGA chrIV:3765590-3765670 5 6.98e-05 GGAA GAGAAAGA TATCAGAGAG chrIV:1804756-1804836 11 9.55e-05 GAAAGAGCAC GTGAGAGA GTAAGGGAAG chrIII:1681121-1681201 42 9.55e-05 ggaaagacag gtgagaga gtgacggggt chrIII:7790632-7790712 30 9.55e-05 GAGTGAGTGA GTGAGAGA ACATTAAAAC chrIII:10096731-10096811 51 1.22e-04 TGAGTATTTT GAGAAAAA AGAGACGGCC chrIV:15025542-15025622 1 1.22e-04 . GAGAAAAA AGCGAAAAGG chrIII:7766089-7766169 17 1.22e-04 AAGGACAGCG GAGAAAAA TTAATATATA chrV:15078750-15078830 45 1.22e-04 ATTGATTAGT GAGAAAAA GAAGAGATAT chrV:10727828-10727908 51 1.22e-04 TACATGCCTA GAGAAAAA GAAGAAAGAG chrM:6673-6753 23 1.22e-04 ATTGTTATTA GAGAAAAA AATAATAATT chrIII:2132234-2132314 26 1.22e-04 TAGAGACGCA GAGAAAAA TGGAGGATTT chrIII:9483706-9483786 12 1.30e-04 ATGTTGCTCC GAGGGAGA GCAATATATT chrIII:13061196-13061276 63 1.51e-04 GAAAATGATA GAGAGACA GAGAGCGCAT chrX:8053231-8053311 69 1.51e-04 AGAGAAAACA GAGAGACA GAGT chrX:10907605-10907685 14 1.51e-04 GAAAAGGTAG GTGAGAGG CAAATAAAAA chrII:7857563-7857643 47 1.88e-04 TAGCGGAGTT GAGAAAAG AGACTCAGTT chrIII:5706360-5706440 11 1.88e-04 TCACGCAAAA GAGAAAAG AGACCCACAC chrI:7129587-7129667 70 1.88e-04 TACTTCGTGG GTGAGAAA TGA chrII:10203311-10203391 55 1.88e-04 TGGGGAATAT GTGAGAAA TGAAGGAGAC chrII:5416387-5416467 66 1.88e-04 ACCCTTTAAA GTGAGAAA TATTATG chrV:11307910-11307990 7 1.88e-04 ATGATT GAGAAAAG AGCACAGGGT chrIII:8319277-8319357 72 2.03e-04 AAAGAAAACG GAGGGAGG T chrV:4502883-4502963 25 2.03e-04 ACACTTTTTC GAGGGAGG GGGATTGTAG chrIV:7723750-7723830 11 2.03e-04 ATGAAAAGAA GAGGGAGG AGTAGGAATC chrII:11830806-11830886 17 2.03e-04 CATTTTACAC GAGAGGGA GCGCGTGTCA chrI:4431912-4431992 46 2.37e-04 GTGTTTCAAT GTGAGAAG AAGCTCTCTC chrII:8329122-8329202 55 2.43e-04 GTTCAAATAC GAGAGGGG GAATGTGGCT chrIII:3200757-3200837 61 2.64e-04 TGATTTATTG GAGGGAAG GATGGAATGG chrIII:10526090-10526170 6 2.92e-04 CAGGC GAGAGAGC AAAGTGTTGT chrV:19897724-19897804 49 2.92e-04 TTGGAGCACA GAGAGAGC ACAACAGGTG chrX:1120596-1120676 8 3.00e-04 TGAAAGC GAGAGGAG GGACATGACG chrII:2565060-2565140 15 3.00e-04 CCACTTGTCC GAGAGGAG TACACGACAA chrM:2288-2368 64 3.44e-04 TTTTCTGAAG GTGAAAGG GAGTTAGTT chrM:3978-4058 38 3.44e-04 TTTATTAATT GAGAAACA ACATTAGTAT chrII:7814465-7814545 44 3.95e-04 AAAGCGGATA GAGACAGA CGATGAGCGA chrM:2705-2785 19 3.95e-04 AAATACTTTA GTGAAAAA ATTTCTTAAT chrI:293191-293271 32 4.25e-04 TCCTTCAAAT GTGGGAGA TGCCCCGTGT chrIII:8447125-8447205 17 4.68e-04 CCGAATATTC GAGAAACG TCTAGTACAT chrX:16392244-16392324 62 4.68e-04 TTGAGCAAAG GAGGAAAA GCAGCACAGT chrI:11666726-11666806 42 4.68e-04 CTGAGAAGAG GTGAGACA CCTGCTGTCA chrV:1575927-1576007 38 4.96e-04 TGGCGGTAAG GAGACAGG AAATGAGGCA chrV:20656777-20656857 26 5.58e-04 CACCTCTCAG GAGAAGGG CTGAGCACCT chrII:13031128-13031208 53 6.10e-04 GAAAAGAATT GAGAAGAA AATGAAGGCA chrIV:3101373-3101453 15 6.70e-04 ACTTGGAAGA CAGAGAGG CGCCGAGAAT chrV:9724257-9724337 26 7.22e-04 AAAATCTAAA CAGAGAAA ATGCAGTACA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGAGARR MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:14612684-14612764 1.3e-05 68_[+1]_4 chrI:10197165-10197245 1.3e-05 6_[+1]_66 chrI:9076287-9076367 1.3e-05 3_[+1]_69 chrI:6238576-6238656 1.3e-05 24_[+1]_48 chrIII:11938033-11938113 1.3e-05 16_[+1]_56 chrIII:3279399-3279479 1.3e-05 66_[+1]_6 chrIII:6078261-6078341 1.3e-05 48_[+1]_24 chrIV:16498198-16498278 1.3e-05 44_[+1]_28 chrV:728053-728133 1.3e-05 63_[+1]_9 chrI:13495282-13495362 1.3e-05 15_[+1]_57 chrIV:13704163-13704243 3.9e-05 8_[+1]_64 chrII:4736848-4736928 3.9e-05 51_[+1]_21 chrIV:10957761-10957841 3.9e-05 10_[+1]_62 chrI:4773065-4773145 5.2e-05 11_[+1]_61 chrI:7479432-7479512 5.2e-05 66_[+1]_6 chrV:2672780-2672860 5.2e-05 54_[+1]_18 chrIV:13682904-13682984 5.2e-05 62_[+1]_10 chrIII:4171099-4171179 7e-05 16_[+1]_56 chrIV:3765590-3765670 7e-05 4_[+1]_68 chrIV:1804756-1804836 9.5e-05 10_[+1]_62 chrIII:1681121-1681201 9.5e-05 41_[+1]_31 chrIII:7790632-7790712 9.5e-05 29_[+1]_43 chrIII:10096731-10096811 0.00012 50_[+1]_22 chrIV:15025542-15025622 0.00012 [+1]_72 chrIII:7766089-7766169 0.00012 16_[+1]_56 chrV:15078750-15078830 0.00012 44_[+1]_28 chrV:10727828-10727908 0.00012 50_[+1]_22 chrM:6673-6753 0.00012 22_[+1]_50 chrIII:2132234-2132314 0.00012 25_[+1]_47 chrIII:9483706-9483786 0.00013 11_[+1]_61 chrIII:13061196-13061276 0.00015 62_[+1]_10 chrX:8053231-8053311 0.00015 68_[+1]_4 chrX:10907605-10907685 0.00015 13_[+1]_59 chrII:7857563-7857643 0.00019 46_[+1]_26 chrIII:5706360-5706440 0.00019 10_[+1]_62 chrI:7129587-7129667 0.00019 69_[+1]_3 chrII:10203311-10203391 0.00019 54_[+1]_18 chrII:5416387-5416467 0.00019 65_[+1]_7 chrV:11307910-11307990 0.00019 6_[+1]_66 chrIII:8319277-8319357 0.0002 71_[+1]_1 chrV:4502883-4502963 0.0002 24_[+1]_48 chrIV:7723750-7723830 0.0002 10_[+1]_62 chrII:11830806-11830886 0.0002 16_[+1]_56 chrI:4431912-4431992 0.00024 45_[+1]_27 chrII:8329122-8329202 0.00024 54_[+1]_18 chrIII:3200757-3200837 0.00026 60_[+1]_12 chrIII:10526090-10526170 0.00029 5_[+1]_67 chrV:19897724-19897804 0.00029 48_[+1]_24 chrX:1120596-1120676 0.0003 7_[+1]_65 chrII:2565060-2565140 0.0003 14_[+1]_58 chrM:2288-2368 0.00034 63_[+1]_9 chrM:3978-4058 0.00034 37_[+1]_35 chrII:7814465-7814545 0.0004 43_[+1]_29 chrM:2705-2785 0.0004 18_[+1]_54 chrI:293191-293271 0.00043 31_[+1]_41 chrIII:8447125-8447205 0.00047 16_[+1]_56 chrX:16392244-16392324 0.00047 61_[+1]_11 chrI:11666726-11666806 0.00047 41_[+1]_31 chrV:1575927-1576007 0.0005 37_[+1]_35 chrV:20656777-20656857 0.00056 25_[+1]_47 chrII:13031128-13031208 0.00061 52_[+1]_20 chrIV:3101373-3101453 0.00067 14_[+1]_58 chrV:9724257-9724337 0.00072 25_[+1]_47 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGAGARR MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GAGAGARR width=8 seqs=63 chrIV:14612684-14612764 ( 69) GAGAGAGA 1 chrI:10197165-10197245 ( 7) GAGAGAGA 1 chrI:9076287-9076367 ( 4) GAGAGAGA 1 chrI:6238576-6238656 ( 25) GAGAGAGA 1 chrIII:11938033-11938113 ( 17) GAGAGAGA 1 chrIII:3279399-3279479 ( 67) GAGAGAGA 1 chrIII:6078261-6078341 ( 49) GAGAGAGA 1 chrIV:16498198-16498278 ( 45) GAGAGAGA 1 chrV:728053-728133 ( 64) GAGAGAGA 1 chrI:13495282-13495362 ( 16) GAGAGAGA 1 chrIV:13704163-13704243 ( 9) GAGAGAAA 1 chrII:4736848-4736928 ( 52) GAGAGAAA 1 chrIV:10957761-10957841 ( 11) GAGAGAAA 1 chrI:4773065-4773145 ( 12) GAGAGAAG 1 chrI:7479432-7479512 ( 67) GAGAGAAG 1 chrV:2672780-2672860 ( 55) GAGAGAAG 1 chrIV:13682904-13682984 ( 63) GAGAGAAG 1 chrIII:4171099-4171179 ( 17) GAGAAAGA 1 chrIV:3765590-3765670 ( 5) GAGAAAGA 1 chrIV:1804756-1804836 ( 11) GTGAGAGA 1 chrIII:1681121-1681201 ( 42) GTGAGAGA 1 chrIII:7790632-7790712 ( 30) GTGAGAGA 1 chrIII:10096731-10096811 ( 51) GAGAAAAA 1 chrIV:15025542-15025622 ( 1) GAGAAAAA 1 chrIII:7766089-7766169 ( 17) GAGAAAAA 1 chrV:15078750-15078830 ( 45) GAGAAAAA 1 chrV:10727828-10727908 ( 51) GAGAAAAA 1 chrM:6673-6753 ( 23) GAGAAAAA 1 chrIII:2132234-2132314 ( 26) GAGAAAAA 1 chrIII:9483706-9483786 ( 12) GAGGGAGA 1 chrIII:13061196-13061276 ( 63) GAGAGACA 1 chrX:8053231-8053311 ( 69) GAGAGACA 1 chrX:10907605-10907685 ( 14) GTGAGAGG 1 chrII:7857563-7857643 ( 47) GAGAAAAG 1 chrIII:5706360-5706440 ( 11) GAGAAAAG 1 chrI:7129587-7129667 ( 70) GTGAGAAA 1 chrII:10203311-10203391 ( 55) GTGAGAAA 1 chrII:5416387-5416467 ( 66) GTGAGAAA 1 chrV:11307910-11307990 ( 7) GAGAAAAG 1 chrIII:8319277-8319357 ( 72) GAGGGAGG 1 chrV:4502883-4502963 ( 25) GAGGGAGG 1 chrIV:7723750-7723830 ( 11) GAGGGAGG 1 chrII:11830806-11830886 ( 17) GAGAGGGA 1 chrI:4431912-4431992 ( 46) GTGAGAAG 1 chrII:8329122-8329202 ( 55) GAGAGGGG 1 chrIII:3200757-3200837 ( 61) GAGGGAAG 1 chrIII:10526090-10526170 ( 6) GAGAGAGC 1 chrV:19897724-19897804 ( 49) GAGAGAGC 1 chrX:1120596-1120676 ( 8) GAGAGGAG 1 chrII:2565060-2565140 ( 15) GAGAGGAG 1 chrM:2288-2368 ( 64) GTGAAAGG 1 chrM:3978-4058 ( 38) GAGAAACA 1 chrII:7814465-7814545 ( 44) GAGACAGA 1 chrM:2705-2785 ( 19) GTGAAAAA 1 chrI:293191-293271 ( 32) GTGGGAGA 1 chrIII:8447125-8447205 ( 17) GAGAAACG 1 chrX:16392244-16392324 ( 62) GAGGAAAA 1 chrI:11666726-11666806 ( 42) GTGAGACA 1 chrV:1575927-1576007 ( 38) GAGACAGG 1 chrV:20656777-20656857 ( 26) GAGAAGGG 1 chrII:13031128-13031208 ( 53) GAGAAGAA 1 chrIV:3101373-3101453 ( 15) CAGAGAGG 1 chrV:9724257-9724337 ( 26) CAGAGAAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGAGARR MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.90618 E= 1.2e-008 -1262 -263 225 -1262 147 -1262 -1262 -69 -1262 -1262 230 -1262 160 -1262 -87 -1262 4 -263 171 -1262 163 -1262 -109 -1262 60 -131 123 -1262 111 -263 71 -1262 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGAGARR MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 63 E= 1.2e-008 0.000000 0.031746 0.968254 0.000000 0.809524 0.000000 0.000000 0.190476 0.000000 0.000000 1.000000 0.000000 0.888889 0.000000 0.111111 0.000000 0.301587 0.031746 0.666667 0.000000 0.904762 0.000000 0.095238 0.000000 0.444444 0.079365 0.476190 0.000000 0.634921 0.031746 0.333333 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGAGARR MEME-1 regular expression -------------------------------------------------------------------------------- GAGA[GA]A[GA][AG] -------------------------------------------------------------------------------- Time 7.53 secs. ******************************************************************************** ******************************************************************************** MOTIF GAGACGCA MEME-2 width = 8 sites = 17 llr = 174 E-value = 5.8e-005 ******************************************************************************** -------------------------------------------------------------------------------- Motif GAGACGCA MEME-2 Description -------------------------------------------------------------------------------- Simplified A :a:9::1a pos.-specific C 1::1a19: probability G 9:a1:8:: matrix T :::::1:: bits 2.3 * * 2.1 * * 1.9 *** * ** 1.6 *** * ** Relative 1.4 *** **** Entropy 1.2 ******** (14.7 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GAGACGCA consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGACGCA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIII:10096731-10096811 14 8.17e-06 GGAGAGAATT GAGACGCA GATTGTTAGA chrI:4773065-4773145 38 8.17e-06 GTACTCAAAA GAGACGCA GACGGTGAGA chrII:13872669-13872749 7 8.17e-06 AACGAG GAGACGCA GAGTTGGGTC chrIII:11938033-11938113 9 8.17e-06 gagagcaa gagacgca gagagagagT chrIV:1804756-1804836 33 8.17e-06 GGGAAGACGA GAGACGCA GGCGGTACAA chrI:13495282-13495362 29 8.17e-06 agagagggga gagacgca gagaaaagag chrIII:1681121-1681201 19 8.17e-06 CGGAAACGAa gagacgca gaatgggaaa chrIII:2132234-2132314 18 8.17e-06 ATGACCGCTA GAGACGCA GAGAAAAATG chrIII:8926666-8926746 53 8.17e-06 CAATGAGAGT GAGACGCA GACGGCGAGG chrII:13004666-13004746 53 8.17e-06 CGGAAGCGGT GAGACGCA GACACTGTGA chrV:7735044-7735124 57 1.37e-05 AGGACAGCTG GAGCcgca acgcgcgcac chrX:14841195-14841275 19 3.17e-05 TAAAAAGATG GAGACTCA TTTTTGTCTG chrX:1103934-1104014 16 3.17e-05 TTCACTTCAA GAGACTCA GAGGTCGTTT chrIII:3279399-3279479 12 3.17e-05 GAGAAAGAGA GAGGCGCA GACAGTAAGA chrIII:8447125-8447205 41 3.96e-05 ACATCGTTGC GAGACCCA TGTAAAATTC chrII:7962320-7962400 12 4.75e-05 ATACTTTCTC CAGACGCA CTGTGTCCAC chrII:10203311-10203391 68 5.97e-05 AGAAATGAAG GAGACGAA GAAAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGACGCA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:10096731-10096811 8.2e-06 13_[+2]_59 chrI:4773065-4773145 8.2e-06 37_[+2]_35 chrII:13872669-13872749 8.2e-06 6_[+2]_66 chrIII:11938033-11938113 8.2e-06 8_[+2]_64 chrIV:1804756-1804836 8.2e-06 32_[+2]_40 chrI:13495282-13495362 8.2e-06 28_[+2]_44 chrIII:1681121-1681201 8.2e-06 18_[+2]_54 chrIII:2132234-2132314 8.2e-06 17_[+2]_55 chrIII:8926666-8926746 8.2e-06 52_[+2]_20 chrII:13004666-13004746 8.2e-06 52_[+2]_20 chrV:7735044-7735124 1.4e-05 56_[+2]_16 chrX:14841195-14841275 3.2e-05 18_[+2]_54 chrX:1103934-1104014 3.2e-05 15_[+2]_57 chrIII:3279399-3279479 3.2e-05 11_[+2]_61 chrIII:8447125-8447205 4e-05 40_[+2]_32 chrII:7962320-7962400 4.8e-05 11_[+2]_61 chrII:10203311-10203391 6e-05 67_[+2]_5 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGACGCA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GAGACGCA width=8 seqs=17 chrIII:10096731-10096811 ( 14) GAGACGCA 1 chrI:4773065-4773145 ( 38) GAGACGCA 1 chrII:13872669-13872749 ( 7) GAGACGCA 1 chrIII:11938033-11938113 ( 9) GAGACGCA 1 chrIV:1804756-1804836 ( 33) GAGACGCA 1 chrI:13495282-13495362 ( 29) GAGACGCA 1 chrIII:1681121-1681201 ( 19) GAGACGCA 1 chrIII:2132234-2132314 ( 18) GAGACGCA 1 chrIII:8926666-8926746 ( 53) GAGACGCA 1 chrII:13004666-13004746 ( 53) GAGACGCA 1 chrV:7735044-7735124 ( 57) GAGCCGCA 1 chrX:14841195-14841275 ( 19) GAGACTCA 1 chrX:1103934-1104014 ( 16) GAGACTCA 1 chrIII:3279399-3279479 ( 12) GAGGCGCA 1 chrIII:8447125-8447205 ( 41) GAGACCCA 1 chrII:7962320-7962400 ( 12) CAGACGCA 1 chrII:10203311-10203391 ( 68) GAGACGAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGACGCA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.8621 E= 5.8e-005 -1073 -174 221 -1073 177 -1073 -1073 -1073 -1073 -1073 230 -1073 159 -174 -179 -1073 -1073 234 -1073 -1073 -1073 -174 202 -138 -231 226 -1073 -1073 177 -1073 -1073 -1073 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGACGCA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 17 E= 5.8e-005 0.000000 0.058824 0.941176 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.882353 0.058824 0.058824 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.058824 0.823529 0.117647 0.058824 0.941176 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGACGCA MEME-2 regular expression -------------------------------------------------------------------------------- GAGACGCA -------------------------------------------------------------------------------- Time 11.16 secs. ******************************************************************************** ******************************************************************************** MOTIF TGATTTAT MEME-3 width = 8 sites = 22 llr = 200 E-value = 1.9e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGATTTAT MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::a:::a: pos.-specific C :1:::::: probability G :9:::3:: matrix T a::aa7:a bits 2.3 2.1 1.9 * * 1.6 ***** ** Relative 1.4 ***** ** Entropy 1.2 ***** ** (13.1 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TGATTTAT consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGATTTAT MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:5321240-5321320 39 4.75e-05 AGATTCAATA TGATTTAT TTCGCACCGT chrI:8761535-8761615 53 4.75e-05 ACTCTCCCAT TGATTTAT TGCCCTTTGT chrV:10917539-10917619 53 4.75e-05 CTCTCGTCAG TGATTTAT TGCAAGTCAA chrII:11830806-11830886 62 4.75e-05 GTGTCCTTGA TGATTTAT TGATAGTTTT chrI:9962983-9963063 23 4.75e-05 CCATTCACCT TGATTTAT GGCGCCGCCT chrII:9265119-9265199 69 4.75e-05 AACAGAGCAA TGATTTAT CACT chrI:1102324-1102404 46 4.75e-05 AAATTTCCAA TGATTTAT TACATGATTT chrIII:7554836-7554916 32 4.75e-05 TCCACCAAAA TGATTTAT TACTTTTTCC chrIII:3200757-3200837 51 4.75e-05 CTCAGAAAGC TGATTTAT TGGAGGGAAG chrX:2046263-2046343 41 4.75e-05 ACACGCAGAA TGATTTAT AGCCTCGACA chrV:10720448-10720528 40 4.75e-05 CAATACCCTT TGATTTAT TACTTTGGTC chrII:2995147-2995227 26 4.75e-05 GTCTCAATAA TGATTTAT TATGGGAACA chrV:20656777-20656857 73 4.75e-05 TCGGGAGAAG TGATTTAT chrIV:16496632-16496712 41 7.90e-05 CATTGCCATC TGATTGAT CTTATTGCCT chrV:15078750-15078830 33 7.90e-05 AGCTGTGTGT TGATTGAT TAGTGAGAAA chrX:15149064-15149144 54 7.90e-05 AATCGGGAAA TGATTGAT GGGCATAGAG chrX:6225065-6225145 53 7.90e-05 CATGTTATAA TGATTGAT GTTTTTGTCT chrX:9841037-9841117 14 7.90e-05 TGTTTTAGCG TGATTGAT TGGCTGTGTA chrIII:7788559-7788639 71 7.90e-05 TCATGAAAAG TGATTGAT TT chrX:1120596-1120676 73 1.25e-04 ATGATAGATC TCATTTAT chrIII:9084480-9084560 10 1.25e-04 GGGACCCCA TCATTTAT CAAGGAGCCG chrI:11666726-11666806 20 1.25e-04 TGTCAAAAGG TCATTTAT CTTCCTGAGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGATTTAT MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:5321240-5321320 4.8e-05 38_[+3]_34 chrI:8761535-8761615 4.8e-05 52_[+3]_20 chrV:10917539-10917619 4.8e-05 52_[+3]_20 chrII:11830806-11830886 4.8e-05 61_[+3]_11 chrI:9962983-9963063 4.8e-05 22_[+3]_50 chrII:9265119-9265199 4.8e-05 68_[+3]_4 chrI:1102324-1102404 4.8e-05 45_[+3]_27 chrIII:7554836-7554916 4.8e-05 31_[+3]_41 chrIII:3200757-3200837 4.8e-05 50_[+3]_22 chrX:2046263-2046343 4.8e-05 40_[+3]_32 chrV:10720448-10720528 4.8e-05 39_[+3]_33 chrII:2995147-2995227 4.8e-05 25_[+3]_47 chrV:20656777-20656857 4.8e-05 72_[+3] chrIV:16496632-16496712 7.9e-05 40_[+3]_32 chrV:15078750-15078830 7.9e-05 32_[+3]_40 chrX:15149064-15149144 7.9e-05 53_[+3]_19 chrX:6225065-6225145 7.9e-05 52_[+3]_20 chrX:9841037-9841117 7.9e-05 13_[+3]_59 chrIII:7788559-7788639 7.9e-05 70_[+3]_2 chrX:1120596-1120676 0.00013 72_[+3] chrIII:9084480-9084560 0.00013 9_[+3]_63 chrI:11666726-11666806 0.00013 19_[+3]_53 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGATTTAT MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGATTTAT width=8 seqs=22 chrX:5321240-5321320 ( 39) TGATTTAT 1 chrI:8761535-8761615 ( 53) TGATTTAT 1 chrV:10917539-10917619 ( 53) TGATTTAT 1 chrII:11830806-11830886 ( 62) TGATTTAT 1 chrI:9962983-9963063 ( 23) TGATTTAT 1 chrII:9265119-9265199 ( 69) TGATTTAT 1 chrI:1102324-1102404 ( 46) TGATTTAT 1 chrIII:7554836-7554916 ( 32) TGATTTAT 1 chrIII:3200757-3200837 ( 51) TGATTTAT 1 chrX:2046263-2046343 ( 41) TGATTTAT 1 chrV:10720448-10720528 ( 40) TGATTTAT 1 chrII:2995147-2995227 ( 26) TGATTTAT 1 chrV:20656777-20656857 ( 73) TGATTTAT 1 chrIV:16496632-16496712 ( 41) TGATTGAT 1 chrV:15078750-15078830 ( 33) TGATTGAT 1 chrX:15149064-15149144 ( 54) TGATTGAT 1 chrX:6225065-6225145 ( 53) TGATTGAT 1 chrX:9841037-9841117 ( 14) TGATTGAT 1 chrIII:7788559-7788639 ( 71) TGATTGAT 1 chrX:1120596-1120676 ( 73) TCATTTAT 1 chrIII:9084480-9084560 ( 10) TCATTTAT 1 chrI:11666726-11666806 ( 20) TCATTTAT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGATTTAT MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.35419 E= 1.9e+000 -1110 -1110 -1110 171 -1110 -53 209 -1110 177 -1110 -1110 -1110 -1110 -1110 -1110 171 -1110 -1110 -1110 171 -1110 -1110 42 125 177 -1110 -1110 -1110 -1110 -1110 -1110 171 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGATTTAT MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 22 E= 1.9e+000 0.000000 0.000000 0.000000 1.000000 0.000000 0.136364 0.863636 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.272727 0.727273 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGATTTAT MEME-3 regular expression -------------------------------------------------------------------------------- TGATT[TG]AT -------------------------------------------------------------------------------- Time 14.76 secs. ******************************************************************************** ******************************************************************************** MOTIF CTSTCTSY MEME-4 width = 8 sites = 49 llr = 366 E-value = 1.2e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTSTCTSY MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C 816:9:54 probability G 214:1:52 matrix T :8:a:a:5 bits 2.3 2.1 1.9 1.6 * ** Relative 1.4 * ***** Entropy 1.2 * ***** (10.8 bits) 0.9 ******* 0.7 ******* 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CTCTCTCT consensus G GC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTSTCTSY MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrV:773371-773451 53 8.59e-06 TTCTCTGCGT CTCTCTCC TTCGCACACT chrX:12184610-12184690 12 1.74e-05 TTAATTTAAG CTCTCTGC TGGTTGCAAC chrIV:3227566-3227646 10 1.74e-05 CTTTCTCTT CTCTCTGC ACATTTTCTC chrIV:6648714-6648794 3 1.74e-05 TT CTCTCTGC GTCTCCTCAT chrIII:11454132-11454212 26 1.74e-05 TAAATCTTAT CTCTCTGC TCTCTTTTCC chrIII:4358497-4358577 22 1.74e-05 ACACTTGTTG CTCTCTGC CACTTTTACA chrIII:9483706-9483786 73 3.08e-05 CTCTATACTT CTCTCTCT chrI:11662759-11662839 2 3.08e-05 T CTCTCTCT CATTCATCTC chrI:4431912-4431992 61 3.08e-05 AAGAAGCTCT CTCTCTCT CTGGTTGTGT chrIV:16496632-16496712 21 4.46e-05 AGCTTGCTTG CTCTCTGT CTCATTGCCA chrI:548133-548213 67 4.46e-05 CTGTCTGCGT CTCTCTGT ACCCCC chrX:5321240-5321320 67 5.34e-05 TGTTTTCTTT CTGTCTCC TATCCT chrI:6166739-6166819 64 6.26e-05 CTGTCTATGA CTGTCTGC GTATCTTCC chrI:2299708-2299788 29 7.63e-05 TATGCAGAGG CTGTCTCT TTTGCTCTCG chrI:14523130-14523210 4 9.94e-05 ACA CTCTCTCG CGACCATTAA chrV:18723740-18723820 63 9.94e-05 CATTTCTGCA CTCTCTCG CCTACTTACT chrX:13329047-13329127 15 9.94e-05 CCACTCTCTA CTCTCTCG TCAGTGCAAA chrIV:13696059-13696139 30 9.94e-05 CGTTCATTAG CTGTCTGT CACTTTGAGA chrII:603145-603225 26 9.94e-05 TCATCTCTAA CTGTCTGT CACTCTCTCA chrII:6486424-6486504 69 9.94e-05 AATGGGACCA CTGTCTGT TTCG chrIII:6405349-6405429 21 1.18e-04 AAGAAGCCAA CTGTCTCG TTGATAATCT chrI:7961880-7961960 46 1.27e-04 CTGCACTTTT CTGTCTGG ATTCTCATTC chrI:295981-296061 46 1.36e-04 TCAGTCTGTC GTCTCTCC GATCAGTGCG chrV:18079310-18079390 53 1.94e-04 GTTTTCTCTC GTCTCTCT CAGCTCTCAA chrI:4974893-4974973 54 1.94e-04 AGCTGCCTGC GTCTCTCT GATCTCAATC chrIV:6646107-6646187 73 1.94e-04 ATAGAAGATT GTCTCTCT chrII:8481264-8481344 66 1.94e-04 CTAATCTGTT CTCTGTGC TCATTTG chrI:8761535-8761615 71 1.94e-04 TGCCCTTTGT CTCTGTGC GT chrII:6825896-6825976 71 1.94e-04 TGACCACTAG CCctctcc ct chrIII:7554836-7554916 72 1.94e-04 ATCGGATGGT GTCTCTCT C chrI:2703302-2703382 66 2.23e-04 GCGATTCGTA CGCTCTCT GACCCCG chrII:3482364-3482444 53 2.55e-04 GGTGCAAGTG CGCTCTGT TGCGGATTTT chrV:9958806-9958886 23 2.55e-04 TTTGTTGTTT GTGTCTCC GCTTTCTCTC chrV:2672780-2672860 35 2.55e-04 TGTGCAAACG CGCTCTGT GGTTACGTGC chrIII:623958-624038 56 2.93e-04 CGTTGTCGGT GTGTCTGC GTATCTCTTT chrII:7962320-7962400 20 3.17e-04 TCCAGACGCA CTGTGTCC ACTTTGTGCT chrI:4224949-4225029 61 3.46e-04 TAATATGTCT CCGTCTCC TCTCTATGCC chrV:7728087-7728167 72 3.85e-04 AAATTGAAAT CGGTCTCT G chrIII:131805-131885 57 3.85e-04 TTCAATTTCA CCGTCTGC GCCTCTATTG chrI:10598544-10598624 28 3.85e-04 CATGTTCTGC GTCTCTCG TCAATGCACG chrI:5087944-5088024 15 3.85e-04 TTTTGTTCTG GTGTCTGT CACGAGCATA chrIII:4005573-4005653 45 4.23e-04 ACATGAACCC CTGTGTCT GTTGTCTCGT chrII:10370927-10371007 7 4.62e-04 TTGCCG CTGTGTGT TTAGAAAGAT chrV:6017758-6017838 42 4.62e-04 AATGCAAGCG CGCTCTGG TGAGAACTAA chrV:15078750-15078830 25 4.62e-04 AGAATATCAG CTGTGTGT TGATTGATTA chrV:20021561-20021641 37 4.62e-04 ATAATGTCGT CTGTGTGT TATTATTGCA chrII:3956983-3957063 29 4.92e-04 AAACTCTTTT CTCCCTCC GCTGACATAC chrV:10917539-10917619 41 4.92e-04 TTACACATCA CCCTCTCG TCAGTGATTT chrI:6506723-6506803 69 5.37e-04 GCTGGTGATC CTCCCTCT CAAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTSTCTSY MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:773371-773451 8.6e-06 52_[+4]_20 chrX:12184610-12184690 1.7e-05 11_[+4]_61 chrIV:3227566-3227646 1.7e-05 9_[+4]_63 chrIV:6648714-6648794 1.7e-05 2_[+4]_70 chrIII:11454132-11454212 1.7e-05 25_[+4]_47 chrIII:4358497-4358577 1.7e-05 21_[+4]_51 chrIII:9483706-9483786 3.1e-05 72_[+4] chrI:11662759-11662839 3.1e-05 1_[+4]_71 chrI:4431912-4431992 3.1e-05 60_[+4]_12 chrIV:16496632-16496712 4.5e-05 20_[+4]_52 chrI:548133-548213 4.5e-05 66_[+4]_6 chrX:5321240-5321320 5.3e-05 66_[+4]_6 chrI:6166739-6166819 6.3e-05 63_[+4]_9 chrI:2299708-2299788 7.6e-05 28_[+4]_44 chrI:14523130-14523210 9.9e-05 3_[+4]_69 chrV:18723740-18723820 9.9e-05 62_[+4]_10 chrX:13329047-13329127 9.9e-05 14_[+4]_58 chrIV:13696059-13696139 9.9e-05 29_[+4]_43 chrII:603145-603225 9.9e-05 25_[+4]_47 chrII:6486424-6486504 9.9e-05 68_[+4]_4 chrIII:6405349-6405429 0.00012 20_[+4]_52 chrI:7961880-7961960 0.00013 45_[+4]_27 chrI:295981-296061 0.00014 45_[+4]_27 chrV:18079310-18079390 0.00019 52_[+4]_20 chrI:4974893-4974973 0.00019 53_[+4]_19 chrIV:6646107-6646187 0.00019 72_[+4] chrII:8481264-8481344 0.00019 65_[+4]_7 chrI:8761535-8761615 0.00019 70_[+4]_2 chrII:6825896-6825976 0.00019 70_[+4]_2 chrIII:7554836-7554916 0.00019 71_[+4]_1 chrI:2703302-2703382 0.00022 65_[+4]_7 chrII:3482364-3482444 0.00025 52_[+4]_20 chrV:9958806-9958886 0.00025 22_[+4]_50 chrV:2672780-2672860 0.00025 34_[+4]_38 chrIII:623958-624038 0.00029 55_[+4]_17 chrII:7962320-7962400 0.00032 19_[+4]_53 chrI:4224949-4225029 0.00035 60_[+4]_12 chrV:7728087-7728167 0.00038 71_[+4]_1 chrIII:131805-131885 0.00038 56_[+4]_16 chrI:10598544-10598624 0.00038 27_[+4]_45 chrI:5087944-5088024 0.00038 14_[+4]_58 chrIII:4005573-4005653 0.00042 44_[+4]_28 chrII:10370927-10371007 0.00046 6_[+4]_66 chrV:6017758-6017838 0.00046 41_[+4]_31 chrV:15078750-15078830 0.00046 24_[+4]_48 chrV:20021561-20021641 0.00046 36_[+4]_36 chrII:3956983-3957063 0.00049 28_[+4]_44 chrV:10917539-10917619 0.00049 40_[+4]_32 chrI:6506723-6506803 0.00054 68_[+4]_4 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTSTCTSY MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTSTCTSY width=8 seqs=49 chrV:773371-773451 ( 53) CTCTCTCC 1 chrX:12184610-12184690 ( 12) CTCTCTGC 1 chrIV:3227566-3227646 ( 10) CTCTCTGC 1 chrIV:6648714-6648794 ( 3) CTCTCTGC 1 chrIII:11454132-11454212 ( 26) CTCTCTGC 1 chrIII:4358497-4358577 ( 22) CTCTCTGC 1 chrIII:9483706-9483786 ( 73) CTCTCTCT 1 chrI:11662759-11662839 ( 2) CTCTCTCT 1 chrI:4431912-4431992 ( 61) CTCTCTCT 1 chrIV:16496632-16496712 ( 21) CTCTCTGT 1 chrI:548133-548213 ( 67) CTCTCTGT 1 chrX:5321240-5321320 ( 67) CTGTCTCC 1 chrI:6166739-6166819 ( 64) CTGTCTGC 1 chrI:2299708-2299788 ( 29) CTGTCTCT 1 chrI:14523130-14523210 ( 4) CTCTCTCG 1 chrV:18723740-18723820 ( 63) CTCTCTCG 1 chrX:13329047-13329127 ( 15) CTCTCTCG 1 chrIV:13696059-13696139 ( 30) CTGTCTGT 1 chrII:603145-603225 ( 26) CTGTCTGT 1 chrII:6486424-6486504 ( 69) CTGTCTGT 1 chrIII:6405349-6405429 ( 21) CTGTCTCG 1 chrI:7961880-7961960 ( 46) CTGTCTGG 1 chrI:295981-296061 ( 46) GTCTCTCC 1 chrV:18079310-18079390 ( 53) GTCTCTCT 1 chrI:4974893-4974973 ( 54) GTCTCTCT 1 chrIV:6646107-6646187 ( 73) GTCTCTCT 1 chrII:8481264-8481344 ( 66) CTCTGTGC 1 chrI:8761535-8761615 ( 71) CTCTGTGC 1 chrII:6825896-6825976 ( 71) CCCTCTCC 1 chrIII:7554836-7554916 ( 72) GTCTCTCT 1 chrI:2703302-2703382 ( 66) CGCTCTCT 1 chrII:3482364-3482444 ( 53) CGCTCTGT 1 chrV:9958806-9958886 ( 23) GTGTCTCC 1 chrV:2672780-2672860 ( 35) CGCTCTGT 1 chrIII:623958-624038 ( 56) GTGTCTGC 1 chrII:7962320-7962400 ( 20) CTGTGTCC 1 chrI:4224949-4225029 ( 61) CCGTCTCC 1 chrV:7728087-7728167 ( 72) CGGTCTCT 1 chrIII:131805-131885 ( 57) CCGTCTGC 1 chrI:10598544-10598624 ( 28) GTCTCTCG 1 chrI:5087944-5088024 ( 15) GTGTCTGT 1 chrIII:4005573-4005653 ( 45) CTGTGTCT 1 chrII:10370927-10371007 ( 7) CTGTGTGT 1 chrV:6017758-6017838 ( 42) CGCTCTGG 1 chrV:15078750-15078830 ( 25) CTGTGTGT 1 chrV:20021561-20021641 ( 37) CTGTGTGT 1 chrII:3956983-3957063 ( 29) CTCCCTCC 1 chrV:10917539-10917619 ( 41) CCCTCTCG 1 chrI:6506723-6506803 ( 69) CTCCCTCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTSTCTSY MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.1364 E= 1.2e+003 -1226 205 -15 -1226 -1226 -127 -99 141 -1226 164 93 -1226 -1226 -227 -1226 165 -1226 212 -51 -1226 -1226 -1226 -1226 171 -1226 143 121 -1226 -1226 90 -32 61 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTSTCTSY MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 49 E= 1.2e+003 0.000000 0.816327 0.183673 0.000000 0.000000 0.081633 0.102041 0.816327 0.000000 0.612245 0.387755 0.000000 0.000000 0.040816 0.000000 0.959184 0.000000 0.857143 0.142857 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.530612 0.469388 0.000000 0.000000 0.367347 0.163265 0.469388 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTSTCTSY MEME-4 regular expression -------------------------------------------------------------------------------- CT[CG]TCT[CG][TC] -------------------------------------------------------------------------------- Time 18.34 secs. ******************************************************************************** ******************************************************************************** MOTIF MATAAATC MEME-5 width = 8 sites = 23 llr = 207 E-value = 7.0e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif MATAAATC MEME-5 Description -------------------------------------------------------------------------------- Simplified A 3a:7aa:: pos.-specific C 7::3:::a probability G :::::::: matrix T ::a1::a: bits 2.3 * 2.1 * 1.9 * ** * 1.6 ** **** Relative 1.4 ** **** Entropy 1.2 *** **** (13.0 bits) 0.9 *** **** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CATAAATC consensus A C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MATAAATC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIV:3227566-3227646 29 2.70e-05 CATTTTCTCT CATAAATC AAATGCCCTT chrIV:13694788-13694868 9 2.70e-05 TCCGCACT CATAAATC ATAGCCCTAC chrIII:11454132-11454212 14 2.70e-05 AATTCCACGT CATAAATC TTATCTCTCT chrIII:7544342-7544422 42 2.70e-05 TAATGGCACC CATAAATC TCAACTCTCA chrII:13004666-13004746 7 2.70e-05 AACGGT CATAAATC AAATAGGGAA chrIV:5535911-5535991 65 2.70e-05 GCTCAATTGT CATAAATC AACTGACA chrIV:3765590-3765670 43 2.70e-05 AGATAAGACT CATAAATC AGGCAGCGTG chrI:5087944-5088024 29 2.70e-05 CTGTCACGAG CATAAATC ATGTTGCAGC chrI:6506723-6506803 35 2.70e-05 CTTCTATGAT CATAAATC AAAATGTCAG chrI:434555-434635 34 4.51e-05 GCCTCAAAGT CATCAATC AGCTAGTTGT chrIV:13699593-13699673 22 4.51e-05 CCGACACACT CATCAATC TCCGCGTCTT chrX:13329047-13329127 59 4.51e-05 TAAAATGACG CATCAATC ACTCTGTCGG chrIV:6648714-6648794 39 4.51e-05 CTATCTCCCA CATCAATC TATTATATTA chrIII:3783226-3783306 29 8.52e-05 CAAACAAGTA AATAAATC TTGATGTGAT chrI:293191-293271 16 8.52e-05 ACAAAAAAGT AATAAATC CTTCAAATGT chrX:9841037-9841117 51 8.52e-05 TCGAAAAGAA AATAAATC AAATATCTGG chrIII:5210456-5210536 21 8.52e-05 CACACAAAGA AATAAATC ATCTATTACG chrI:2706289-2706369 49 8.52e-05 CGAAGAACCT AATAAATC AAGACATTAA chrIII:7780776-7780856 58 8.52e-05 GTCAAAAATG AATAAATC AATTGACAAT chrIII:10526090-10526170 24 1.12e-04 AAAGTGTTGT AATCAATC TATTCGCTGG chrIV:13695860-13695940 33 1.12e-04 TAACATGAGT AATCAATC TTCGTTGCAA chrIV:11779173-11779253 39 1.40e-04 ACGCGCCTTC CATTAATC ATTTTGTCAC chrIV:13721166-13721246 28 1.40e-04 CTTTGTAACC CATTAATC ATTGTTGAAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MATAAATC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:3227566-3227646 2.7e-05 28_[+5]_44 chrIV:13694788-13694868 2.7e-05 8_[+5]_64 chrIII:11454132-11454212 2.7e-05 13_[+5]_59 chrIII:7544342-7544422 2.7e-05 41_[+5]_31 chrII:13004666-13004746 2.7e-05 6_[+5]_66 chrIV:5535911-5535991 2.7e-05 64_[+5]_8 chrIV:3765590-3765670 2.7e-05 42_[+5]_30 chrI:5087944-5088024 2.7e-05 28_[+5]_44 chrI:6506723-6506803 2.7e-05 34_[+5]_38 chrI:434555-434635 4.5e-05 33_[+5]_39 chrIV:13699593-13699673 4.5e-05 21_[+5]_51 chrX:13329047-13329127 4.5e-05 58_[+5]_14 chrIV:6648714-6648794 4.5e-05 38_[+5]_34 chrIII:3783226-3783306 8.5e-05 28_[+5]_44 chrI:293191-293271 8.5e-05 15_[+5]_57 chrX:9841037-9841117 8.5e-05 50_[+5]_22 chrIII:5210456-5210536 8.5e-05 20_[+5]_52 chrI:2706289-2706369 8.5e-05 48_[+5]_24 chrIII:7780776-7780856 8.5e-05 57_[+5]_15 chrIII:10526090-10526170 0.00011 23_[+5]_49 chrIV:13695860-13695940 0.00011 32_[+5]_40 chrIV:11779173-11779253 0.00014 38_[+5]_34 chrIV:13721166-13721246 0.00014 27_[+5]_45 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MATAAATC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF MATAAATC width=8 seqs=23 chrIV:3227566-3227646 ( 29) CATAAATC 1 chrIV:13694788-13694868 ( 9) CATAAATC 1 chrIII:11454132-11454212 ( 14) CATAAATC 1 chrIII:7544342-7544422 ( 42) CATAAATC 1 chrII:13004666-13004746 ( 7) CATAAATC 1 chrIV:5535911-5535991 ( 65) CATAAATC 1 chrIV:3765590-3765670 ( 43) CATAAATC 1 chrI:5087944-5088024 ( 29) CATAAATC 1 chrI:6506723-6506803 ( 35) CATAAATC 1 chrI:434555-434635 ( 34) CATCAATC 1 chrIV:13699593-13699673 ( 22) CATCAATC 1 chrX:13329047-13329127 ( 59) CATCAATC 1 chrIV:6648714-6648794 ( 39) CATCAATC 1 chrIII:3783226-3783306 ( 29) AATAAATC 1 chrI:293191-293271 ( 16) AATAAATC 1 chrX:9841037-9841117 ( 51) AATAAATC 1 chrIII:5210456-5210536 ( 21) AATAAATC 1 chrI:2706289-2706369 ( 49) AATAAATC 1 chrIII:7780776-7780856 ( 58) AATAAATC 1 chrIII:10526090-10526170 ( 24) AATCAATC 1 chrIV:13695860-13695940 ( 33) AATCAATC 1 chrIV:11779173-11779253 ( 39) CATTAATC 1 chrIV:13721166-13721246 ( 28) CATTAATC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MATAAATC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.23674 E= 7.0e+000 25 173 -1117 -1117 177 -1117 -1117 -1117 -1117 -1117 -1117 171 115 40 -1117 -182 177 -1117 -1117 -1117 177 -1117 -1117 -1117 -1117 -1117 -1117 171 -1117 234 -1117 -1117 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MATAAATC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 23 E= 7.0e+000 0.347826 0.652174 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.652174 0.260870 0.000000 0.086957 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MATAAATC MEME-5 regular expression -------------------------------------------------------------------------------- [CA]AT[AC]AATC -------------------------------------------------------------------------------- Time 21.84 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:7816556-7816636 7.92e-01 80 chrIII:7815126-7815206 9.43e-01 80 chrI:6506723-6506803 2.15e-02 34_[+5(2.70e-05)]_38 chrIII:7788559-7788639 9.55e-02 70_[+3(7.90e-05)]_2 chrIII:7780776-7780856 6.77e-02 57_[+5(8.52e-05)]_15 chrIII:7814914-7814994 9.40e-01 80 chrI:2706289-2706369 2.71e-02 48_[+5(8.52e-05)]_24 chrI:548133-548213 2.22e-01 56_[+4(6.26e-05)]_2_[+4(4.46e-05)]_\ 6 chrI:5087944-5088024 6.61e-03 28_[+5(2.70e-05)]_44 chrIII:7778675-7778755 2.05e-01 80 chrII:9299856-9299936 3.21e-01 80 chrIII:7815983-7816063 5.76e-01 80 chrIV:3765590-3765670 8.04e-04 4_[+1(6.98e-05)]_30_[+5(2.70e-05)]_\ 30 chrV:4491890-4491970 7.14e-01 80 chrI:9303144-9303224 1.38e-01 80 chrV:20656777-20656857 9.58e-03 72_[+3(4.75e-05)] chrIII:4358497-4358577 1.02e-02 21_[+4(1.74e-05)]_51 chrII:134005-134085 2.50e-02 80 chrI:4840963-4841043 2.43e-01 80 chrV:1060624-1060704 4.47e-01 80 chrX:4266364-4266444 7.63e-01 80 chrI:11666726-11666806 7.19e-03 80 chrI:295981-296061 1.89e-01 80 chrII:2995147-2995227 4.48e-02 25_[+3(4.75e-05)]_47 chrIII:5210456-5210536 6.46e-03 20_[+5(8.52e-05)]_52 chrX:10612545-10612625 1.22e-01 2_[+3(4.75e-05)]_20_[+3(4.75e-05)]_\ 42 chrIV:13721166-13721246 1.50e-02 80 chrIV:3101373-3101453 2.63e-01 80 chrV:11307910-11307990 2.99e-02 80 chrII:5416387-5416467 3.21e-01 80 chrIV:11779173-11779253 1.91e-01 80 chrIV:740844-740924 3.67e-02 80 chrX:9841037-9841117 1.23e-03 13_[+3(7.90e-05)]_29_[+5(8.52e-05)]_\ 22 chrX:6225065-6225145 4.88e-02 52_[+3(7.90e-05)]_20 chrIII:7784292-7784372 6.67e-01 80 chrV:10720448-10720528 2.82e-02 39_[+3(4.75e-05)]_33 chrIV:5535911-5535991 5.47e-02 64_[+5(2.70e-05)]_8 chrX:2046263-2046343 1.59e-01 40_[+3(4.75e-05)]_32 chrIII:3200757-3200837 4.29e-04 50_[+3(4.75e-05)]_22 chrV:8252715-8252795 6.54e-01 80 chrI:2703302-2703382 6.81e-02 80 chrIII:7554836-7554916 2.94e-02 31_[+3(4.75e-05)]_41 chrI:5776030-5776110 7.81e-01 80 chrI:7040881-7040961 7.25e-02 80 chrV:13346011-13346091 5.76e-01 80 chrII:6486424-6486504 1.39e-01 68_[+4(9.94e-05)]_4 chrM:505-585 8.02e-01 80 chrII:5841248-5841328 2.73e-01 80 chrIII:7790632-7790712 6.13e-02 29_[+1(9.55e-05)]_43 chrI:1102324-1102404 1.89e-02 45_[+3(4.75e-05)]_27 chrV:13154316-13154396 1.80e-01 80 chrII:13004666-13004746 8.37e-05 6_[+5(2.70e-05)]_38_[+2(8.17e-06)]_\ 20 chrII:9265119-9265199 7.39e-03 68_[+3(4.75e-05)]_4 chrIII:9084480-9084560 4.20e-02 80 chrM:13176-13256 9.94e-01 80 chrIV:12637567-12637647 9.57e-01 80 chrM:3978-4058 2.76e-01 80 chrIII:7544342-7544422 2.08e-03 41_[+5(2.70e-05)]_31 chrX:3455743-3455823 4.39e-01 80 chrIV:10957761-10957841 1.21e-01 10_[+1(3.93e-05)]_38_[+1(6.98e-05)]_\ 16 chrIII:8926666-8926746 4.00e-03 52_[+2(8.17e-06)]_20 chrIII:2132234-2132314 2.93e-03 17_[+2(8.17e-06)]_55 chrM:10462-10542 6.97e-01 80 chrII:6825896-6825976 1.12e-01 80 chrI:435558-435638 1.01e-01 34_[+4(3.08e-05)]_[+4(3.08e-05)]_\ [+4(3.08e-05)]_22 chrV:5995742-5995822 7.12e-02 80 chrI:9962983-9963063 6.84e-03 22_[+3(4.75e-05)]_50 chrII:11830806-11830886 2.27e-03 61_[+3(4.75e-05)]_11 chrI:293191-293271 8.40e-03 15_[+5(8.52e-05)]_57 chrV:20021561-20021641 1.60e-02 80 chrIII:11454132-11454212 9.34e-04 13_[+5(2.70e-05)]_4_[+4(1.74e-05)]_\ 47 chrV:7822842-7822922 5.96e-02 80 chrI:4431912-4431992 3.78e-03 56_[+4(3.08e-05)]_16 chrII:14425979-14426059 5.56e-02 80 chrM:6673-6753 8.72e-02 80 chrI:11662759-11662839 1.63e-02 1_[+4(3.08e-05)]_71 chrM:7815-7895 2.49e-01 80 chrIV:17269928-17270008 4.75e-02 80 chrM:7605-7685 9.44e-01 80 chrM:9696-9776 7.33e-01 80 chrIV:13695860-13695940 3.30e-03 6_[+3(7.90e-05)]_66 chrII:13799331-13799411 1.01e-01 80 chrIV:6648714-6648794 4.44e-03 2_[+4(1.74e-05)]_28_[+5(4.51e-05)]_\ 34 chrII:9308623-9308703 1.86e-01 80 chrI:4804465-4804545 5.64e-01 80 chrV:10917539-10917619 1.41e-02 52_[+3(4.75e-05)]_20 chrII:603145-603225 2.22e-01 25_[+4(9.94e-05)]_47 chrX:15149064-15149144 1.04e-01 53_[+3(7.90e-05)]_19 chrII:10203311-10203391 2.23e-02 67_[+2(5.97e-05)]_5 chrX:6894262-6894342 3.86e-01 80 chrII:7962320-7962400 1.57e-02 11_[+2(4.75e-05)]_61 chrX:3689640-3689720 2.10e-01 80 chrX:9163295-9163375 1.88e-01 80 chrII:4736848-4736928 8.74e-02 51_[+1(3.93e-05)]_21 chrII:5223057-5223137 3.61e-01 80 chrIV:5042048-5042128 1.41e-01 80 chrM:13601-13681 7.51e-01 80 chrV:11083881-11083961 8.51e-01 80 chrI:11105807-11105887 3.66e-01 80 chrM:2501-2581 6.88e-01 80 chrIV:13696059-13696139 2.09e-01 29_[+4(9.94e-05)]_43 chrX:16392244-16392324 7.48e-02 80 chrV:18581930-18582010 2.54e-01 80 chrM:2705-2785 5.99e-01 80 chrI:8761535-8761615 4.81e-03 52_[+3(4.75e-05)]_20 chrIV:11068436-11068516 9.94e-01 80 chrIII:3781855-3781935 6.24e-01 80 chrIV:13682904-13682984 1.01e-03 62_[+1(5.18e-05)]_10 chrI:10583139-10583219 9.26e-01 80 chrM:5684-5764 3.66e-01 80 chrI:5579487-5579567 7.36e-01 80 chrIV:13826501-13826581 6.84e-01 80 chrV:10727828-10727908 1.70e-02 80 chrV:15078750-15078830 1.41e-03 32_[+3(7.90e-05)]_40 chrIV:1108091-1108171 9.53e-02 80 chrX:5321240-5321320 9.04e-04 38_[+3(4.75e-05)]_20_[+4(5.34e-05)]_\ 6 chrV:2672780-2672860 9.04e-03 54_[+1(5.18e-05)]_18 chrM:6469-6549 9.84e-01 80 chrX:13329047-13329127 4.72e-03 14_[+4(9.94e-05)]_36_[+5(4.51e-05)]_\ 14 chrV:9454114-9454194 7.55e-01 80 chrIV:13699593-13699673 8.97e-03 21_[+5(4.51e-05)]_51 chrIV:16496632-16496712 1.04e-02 20_[+4(4.46e-05)]_12_[+3(7.90e-05)]_\ 32 chrV:12222869-12222949 2.11e-01 80 chrII:9307059-9307139 2.64e-01 80 chrIV:11572687-11572767 1.25e-01 80 chrI:434555-434635 1.51e-01 33_[+5(4.51e-05)]_39 chrIV:15433933-15434013 9.39e-01 80 chrII:7812410-7812490 4.91e-01 80 chrI:4224949-4225029 4.92e-01 80 chrII:2565060-2565140 2.28e-01 80 chrX:10907605-10907685 8.68e-03 80 chrM:3692-3772 9.61e-01 80 chrX:7715599-7715679 9.24e-01 80 chrII:6841218-6841298 8.95e-02 80 chrIII:1681121-1681201 5.25e-03 18_[+2(8.17e-06)]_15_[+1(9.55e-05)]_\ 31 chrIII:6402441-6402521 4.81e-01 80 chrIII:3783226-3783306 5.25e-02 28_[+5(8.52e-05)]_44 chrII:3661853-3661933 3.71e-01 80 chrIV:11480549-11480629 1.69e-01 80 chrI:2299708-2299788 1.60e-01 28_[+4(7.63e-05)]_44 chrV:9958806-9958886 2.62e-01 80 chrIV:13694788-13694868 2.28e-02 8_[+5(2.70e-05)]_64 chrI:6166739-6166819 8.64e-02 63_[+4(6.26e-05)]_9 chrI:13495282-13495362 4.94e-04 15_[+1(1.25e-05)]_5_[+2(8.17e-06)]_\ 7_[+1(3.93e-05)]_29 chrIII:6744756-6744836 9.43e-01 80 chrI:10598544-10598624 4.87e-01 80 chrIV:7723750-7723830 7.69e-02 80 chrM:1317-1397 7.81e-01 80 chrIII:12688187-12688267 4.84e-01 80 chrM:11433-11513 9.42e-01 80 chrIV:1804756-1804836 4.13e-03 10_[+1(9.55e-05)]_14_[+2(8.17e-06)]_\ 40 chrIII:9987021-9987101 1.13e-01 80 chrV:4502883-4502963 2.38e-01 80 chrX:14653591-14653671 5.32e-01 80 chrIII:12137246-12137326 7.27e-01 80 chrX:1120596-1120676 1.22e-02 80 chrM:10975-11055 8.36e-01 80 chrII:8481264-8481344 1.19e-01 80 chrIV:9104510-9104590 9.49e-01 80 chrV:728053-728133 3.72e-02 61_[+1(1.25e-05)]_11 chrIII:6405349-6405429 1.22e-02 80 chrI:14862209-14862289 2.29e-01 80 chrI:3516418-3516498 9.06e-01 80 chrIV:16498198-16498278 6.27e-03 44_[+1(1.25e-05)]_[+1(1.25e-05)]_20 chrV:18723740-18723820 3.04e-01 62_[+4(9.94e-05)]_10 chrI:7479432-7479512 2.95e-02 66_[+1(5.18e-05)]_6 chrV:13176494-13176574 5.57e-01 80 chrM:12358-12438 9.45e-01 80 chrIV:3227566-3227646 2.71e-03 9_[+4(1.74e-05)]_11_[+5(2.70e-05)]_\ 44 chrIII:6078261-6078341 2.69e-02 48_[+1(1.25e-05)]_24 chrI:14523130-14523210 1.12e-01 3_[+4(9.94e-05)]_69 chrV:9274361-9274441 5.22e-01 80 chrI:7129587-7129667 1.08e-01 80 chrX:8053231-8053311 7.48e-02 80 chrV:6017758-6017838 2.46e-02 80 chrIII:3279399-3279479 2.90e-03 7_[+1(2.12e-05)]_51_[+1(1.25e-05)]_\ 6 chrIII:343843-343923 9.60e-01 80 chrIV:6646107-6646187 8.41e-03 80 chrIII:7766089-7766169 1.07e-01 80 chrIV:17268768-17268848 6.07e-01 80 chrIII:11938033-11938113 9.53e-04 8_[+2(8.17e-06)]_[+1(1.25e-05)]_56 chrI:6221021-6221101 8.84e-01 80 chrII:10370927-10371007 1.32e-01 80 chrM:9155-9235 8.90e-01 80 chrIV:8947212-8947292 5.80e-01 80 chrV:773371-773451 6.45e-02 52_[+4(8.59e-06)]_8_[+4(1.74e-05)]_\ 4 chrX:12690489-12690569 5.07e-01 80 chrIII:4195852-4195932 5.07e-01 80 chrV:19897724-19897804 5.62e-02 80 chrIII:9483706-9483786 1.08e-03 72_[+4(3.08e-05)] chrX:14487427-14487507 9.47e-01 80 chrV:14848723-14848803 1.00e-02 80 chrIV:13704163-13704243 2.98e-02 8_[+1(3.93e-05)]_64 chrIV:261777-261857 4.69e-01 80 chrX:3488178-3488258 8.24e-01 80 chrII:13872669-13872749 1.47e-02 6_[+2(8.17e-06)]_66 chrII:3482364-3482444 2.90e-01 80 chrM:4692-4772 9.16e-01 80 chrII:8747953-8748033 5.85e-01 80 chrIII:5706360-5706440 5.98e-03 17_[+2(3.96e-05)]_55 chrI:4974893-4974973 5.67e-02 80 chrV:1575927-1576007 1.29e-01 80 chrI:4773065-4773145 1.60e-03 11_[+1(5.18e-05)]_18_[+2(8.17e-06)]_\ 35 chrM:2288-2368 1.68e-01 80 chrIII:10432340-10432420 3.97e-01 80 chrIII:131805-131885 4.70e-01 80 chrI:7961880-7961960 2.48e-01 80 chrIII:13061196-13061276 1.97e-01 80 chrIII:4005573-4005653 6.23e-02 80 chrII:3956983-3957063 3.21e-01 80 chrII:7814465-7814545 2.79e-01 80 chrV:9724257-9724337 1.36e-01 80 chrI:6238576-6238656 3.39e-02 24_[+1(1.25e-05)]_48 chrX:10238364-10238444 4.13e-01 80 chrIII:10526090-10526170 2.26e-02 80 chrI:6175151-6175231 8.29e-02 80 chrII:8329122-8329202 3.29e-01 80 chrX:1103934-1104014 9.63e-02 15_[+2(3.17e-05)]_57 chrIII:623958-624038 1.60e-01 80 chrI:9076287-9076367 6.13e-03 3_[+1(1.25e-05)]_4_[+1(3.93e-05)]_\ 57 chrV:7735044-7735124 1.04e-02 56_[+2(1.37e-05)]_16 chrI:5244258-5244338 4.23e-01 80 chrIV:16863630-16863710 5.51e-01 80 chrI:10197165-10197245 8.20e-02 6_[+1(1.25e-05)]_66 chrII:13031128-13031208 2.00e-01 80 chrIII:13256769-13256849 4.99e-01 80 chrIV:15025542-15025622 1.55e-01 80 chrX:12184610-12184690 1.09e-01 11_[+4(1.74e-05)]_61 chrX:1122359-1122439 4.13e-01 80 chrX:17479774-17479854 2.01e-01 80 chrI:1175841-1175921 3.74e-01 80 chrIV:14464184-14464264 6.67e-01 80 chrIII:2578717-2578797 1.34e-01 80 chrIII:8319277-8319357 1.32e-01 80 chrII:3808349-3808429 7.45e-01 80 chrIII:4542415-4542495 4.30e-01 80 chrI:9077428-9077508 6.77e-01 80 chrII:3502777-3502857 8.80e-01 80 chrV:18079310-18079390 4.62e-02 80 chrIII:10096731-10096811 4.57e-03 13_[+2(8.17e-06)]_59 chrV:7728087-7728167 1.37e-01 80 chrIII:4171099-4171179 1.81e-01 16_[+1(6.98e-05)]_56 chrX:13519294-13519374 8.30e-01 80 chrII:4238071-4238151 9.28e-01 80 chrIII:8447125-8447205 3.06e-02 40_[+2(3.96e-05)]_32 chrX:14841195-14841275 1.44e-02 18_[+2(3.17e-05)]_54 chrV:4731558-4731638 7.56e-01 80 chrII:7857563-7857643 3.97e-03 53_[+2(3.17e-05)]_19 chrIV:14612684-14612764 1.50e-02 62_[+1(1.25e-05)]_[+1(1.25e-05)]_2 chrX:12693563-12693643 4.57e-01 80 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n12.farnam.hpc.yale.internal ********************************************************************************