******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/worm/fasta/RankLinear2.0_40/lsy-27.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrM:13158-13238 1.0000 80 chrM:168-248 1.0000 80 chrM:8688-8768 1.0000 80 chrX:16590421-16590501 1.0000 80 chrX:5451192-5451272 1.0000 80 chrM:9708-9788 1.0000 80 chrM:7804-7884 1.0000 80 chrV:11177029-11177109 1.0000 80 chrM:5748-5828 1.0000 80 chrX:8819997-8820077 1.0000 80 chrI:3198969-3199049 1.0000 80 chrM:11490-11570 1.0000 80 chrII:5701582-5701662 1.0000 80 chrIV:4880709-4880789 1.0000 80 chrIV:7316742-7316822 1.0000 80 chrM:1882-1962 1.0000 80 chrM:10297-10377 1.0000 80 chrIII:11353671-11353751 1.0000 80 chrM:3624-3704 1.0000 80 chrII:9713269-9713349 1.0000 80 chrM:2907-2987 1.0000 80 chrI:8487411-8487491 1.0000 80 chrX:13038864-13038944 1.0000 80 chrX:5485667-5485747 1.0000 80 chrI:12324773-12324853 1.0000 80 chrV:6551804-6551884 1.0000 80 chrIII:13016124-13016204 1.0000 80 chrX:14228854-14228934 1.0000 80 chrIV:14764850-14764930 1.0000 80 chrM:8209-8289 1.0000 80 chrX:3793498-3793578 1.0000 80 chrM:6414-6494 1.0000 80 chrI:6513880-6513960 1.0000 80 chrIII:9617061-9617141 1.0000 80 chrIV:7162696-7162776 1.0000 80 chrIV:991219-991299 1.0000 80 chrM:7028-7108 1.0000 80 chrX:7773780-7773860 1.0000 80 chrII:11968425-11968505 1.0000 80 chrX:14478888-14478968 1.0000 80 chrIV:15289656-15289736 1.0000 80 chrIV:15931279-15931359 1.0000 80 chrIV:15693429-15693509 1.0000 80 chrIV:15476416-15476496 1.0000 80 chrV:16225689-16225769 1.0000 80 chrIV:4347859-4347939 1.0000 80 chrX:16558969-16559049 1.0000 80 chrIII:4176347-4176427 1.0000 80 chrI:852181-852261 1.0000 80 chrM:998-1078 1.0000 80 chrV:16648730-16648810 1.0000 80 chrI:12065828-12065908 1.0000 80 chrM:7228-7308 1.0000 80 chrM:10862-10942 1.0000 80 chrIV:12417033-12417113 1.0000 80 chrX:6286245-6286325 1.0000 80 chrV:5667479-5667559 1.0000 80 chrIII:7891956-7892036 1.0000 80 chrV:10361943-10362023 1.0000 80 chrIV:14576627-14576707 1.0000 80 chrX:8608950-8609030 1.0000 80 chrII:5823677-5823757 1.0000 80 chrIV:16684386-16684466 1.0000 80 chrIV:867008-867088 1.0000 80 chrIII:2030854-2030934 1.0000 80 chrII:5714967-5715047 1.0000 80 chrIII:9104259-9104339 1.0000 80 chrIII:13224635-13224715 1.0000 80 chrIII:89317-89397 1.0000 80 chrIV:7275355-7275435 1.0000 80 chrII:13521420-13521500 1.0000 80 chrIII:1163342-1163422 1.0000 80 chrI:6164185-6164265 1.0000 80 chrM:9077-9157 1.0000 80 chrI:6756471-6756551 1.0000 80 chrV:19722970-19723050 1.0000 80 chrII:4904398-4904478 1.0000 80 chrX:15200780-15200860 1.0000 80 chrV:11412289-11412369 1.0000 80 chrX:13781621-13781701 1.0000 80 chrII:9054776-9054856 1.0000 80 chrV:15156699-15156779 1.0000 80 chrX:10148573-10148653 1.0000 80 chrI:11584776-11584856 1.0000 80 chrI:6135788-6135868 1.0000 80 chrM:2323-2403 1.0000 80 chrIV:14225084-14225164 1.0000 80 chrM:6214-6294 1.0000 80 chrIV:4650773-4650853 1.0000 80 chrI:8245631-8245711 1.0000 80 chrII:5873804-5873884 1.0000 80 chrM:4695-4775 1.0000 80 chrIII:2031373-2031453 1.0000 80 chrX:325799-325879 1.0000 80 chrM:12410-12490 1.0000 80 chrX:11872387-11872467 1.0000 80 chrM:5334-5414 1.0000 80 chrIV:14327128-14327208 1.0000 80 chrI:5127602-5127682 1.0000 80 chrIV:322636-322716 1.0000 80 chrII:12541757-12541837 1.0000 80 chrX:10132907-10132987 1.0000 80 chrII:6197011-6197091 1.0000 80 chrI:3852-3932 1.0000 80 chrX:7323759-7323839 1.0000 80 chrM:9276-9356 1.0000 80 chrX:9238850-9238930 1.0000 80 chrV:15554047-15554127 1.0000 80 chrI:6136606-6136686 1.0000 80 chrV:11534742-11534822 1.0000 80 chrI:5843056-5843136 1.0000 80 chrX:13442619-13442699 1.0000 80 chrV:53442-53522 1.0000 80 chrIII:6961334-6961414 1.0000 80 chrIV:991421-991501 1.0000 80 chrX:6220069-6220149 1.0000 80 chrX:12843668-12843748 1.0000 80 chrX:8971546-8971626 1.0000 80 chrI:4967583-4967663 1.0000 80 chrIII:4508507-4508587 1.0000 80 chrV:6229671-6229751 1.0000 80 chrIII:6280516-6280596 1.0000 80 chrV:12318255-12318335 1.0000 80 chrI:9327594-9327674 1.0000 80 chrIII:7336359-7336439 1.0000 80 chrX:10145272-10145352 1.0000 80 chrV:12780419-12780499 1.0000 80 chrIV:7654486-7654566 1.0000 80 chrIV:14013824-14013904 1.0000 80 chrIV:15039616-15039696 1.0000 80 chrIV:6481148-6481228 1.0000 80 chrII:10542113-10542193 1.0000 80 chrIV:2805648-2805728 1.0000 80 chrIII:7141357-7141437 1.0000 80 chrIII:1424514-1424594 1.0000 80 chrX:5713683-5713763 1.0000 80 chrII:5782120-5782200 1.0000 80 chrX:8646464-8646544 1.0000 80 chrIII:5706416-5706496 1.0000 80 chrIV:5334713-5334793 1.0000 80 chrX:4789095-4789175 1.0000 80 chrX:14115610-14115690 1.0000 80 chrII:14617053-14617133 1.0000 80 chrIV:16388421-16388501 1.0000 80 chrV:15511743-15511823 1.0000 80 chrV:16592293-16592373 1.0000 80 chrIV:2639746-2639826 1.0000 80 chrIII:11066953-11067033 1.0000 80 chrIII:9780787-9780867 1.0000 80 chrIII:4269725-4269805 1.0000 80 chrIII:9717369-9717449 1.0000 80 chrIII:7642169-7642249 1.0000 80 chrI:6220897-6220977 1.0000 80 chrI:8426790-8426870 1.0000 80 chrIV:11602298-11602378 1.0000 80 chrV:9318203-9318283 1.0000 80 chrI:2410100-2410180 1.0000 80 chrIV:12404294-12404374 1.0000 80 chrI:13653945-13654025 1.0000 80 chrX:16604623-16604703 1.0000 80 chrIII:6887710-6887790 1.0000 80 chrIV:4445918-4445998 1.0000 80 chrX:4444274-4444354 1.0000 80 chrIV:7845685-7845765 1.0000 80 chrI:7079641-7079721 1.0000 80 chrX:3697769-3697849 1.0000 80 chrV:12491247-12491327 1.0000 80 chrX:16377993-16378073 1.0000 80 chrV:2673982-2674062 1.0000 80 chrIII:2786011-2786091 1.0000 80 chrIV:9477693-9477773 1.0000 80 chrX:1880837-1880917 1.0000 80 chrI:4254195-4254275 1.0000 80 chrI:2514286-2514366 1.0000 80 chrX:12458123-12458203 1.0000 80 chrIII:1122369-1122449 1.0000 80 chrX:9091445-9091525 1.0000 80 chrIV:5364276-5364356 1.0000 80 chrIII:502707-502787 1.0000 80 chrII:15025899-15025979 1.0000 80 chrX:5707989-5708069 1.0000 80 chrI:9267123-9267203 1.0000 80 chrX:16590914-16590994 1.0000 80 chrIII:12250375-12250455 1.0000 80 chrIV:12086633-12086713 1.0000 80 chrI:11505510-11505590 1.0000 80 chrIII:7208035-7208115 1.0000 80 chrV:7237308-7237388 1.0000 80 chrX:353288-353368 1.0000 80 chrV:19643169-19643249 1.0000 80 chrIII:1604621-1604701 1.0000 80 chrX:2549482-2549562 1.0000 80 chrV:8228963-8229043 1.0000 80 chrIII:2768800-2768880 1.0000 80 chrI:9988962-9989042 1.0000 80 chrIV:11474177-11474257 1.0000 80 chrI:5165007-5165087 1.0000 80 chrI:6105757-6105837 1.0000 80 chrIII:12874867-12874947 1.0000 80 chrX:14804890-14804970 1.0000 80 chrI:1444144-1444224 1.0000 80 chrV:16370163-16370243 1.0000 80 chrIII:10460723-10460803 1.0000 80 chrX:12172026-12172106 1.0000 80 chrIV:6756620-6756700 1.0000 80 chrIV:8375525-8375605 1.0000 80 chrII:5661219-5661299 1.0000 80 chrX:3371425-3371505 1.0000 80 chrIII:6972017-6972097 1.0000 80 chrIII:4689734-4689814 1.0000 80 chrI:9619946-9620026 1.0000 80 chrIV:2408571-2408651 1.0000 80 chrII:3519162-3519242 1.0000 80 chrI:12652234-12652314 1.0000 80 chrIV:7574067-7574147 1.0000 80 chrI:1446986-1447066 1.0000 80 chrIV:1094359-1094439 1.0000 80 chrI:6212823-6212903 1.0000 80 chrI:5986364-5986444 1.0000 80 chrIV:2389053-2389133 1.0000 80 chrII:5032730-5032810 1.0000 80 chrV:15873900-15873980 1.0000 80 chrX:6593535-6593615 1.0000 80 chrIII:4237834-4237914 1.0000 80 chrIV:11179334-11179414 1.0000 80 chrX:13448839-13448919 1.0000 80 chrX:12890258-12890338 1.0000 80 chrV:15191044-15191124 1.0000 80 chrI:5706969-5707049 1.0000 80 chrX:13306976-13307056 1.0000 80 chrI:5429862-5429942 1.0000 80 chrIV:9191326-9191406 1.0000 80 chrIII:6158829-6158909 1.0000 80 chrII:10840233-10840313 1.0000 80 chrI:13297743-13297823 1.0000 80 chrI:9605806-9605886 1.0000 80 chrIII:13643698-13643778 1.0000 80 chrIII:12608743-12608823 1.0000 80 chrII:11484782-11484862 1.0000 80 chrX:12563727-12563807 1.0000 80 chrX:1345028-1345108 1.0000 80 chrV:15465156-15465236 1.0000 80 chrIV:11025981-11026061 1.0000 80 chrII:5661826-5661906 1.0000 80 chrI:6082788-6082868 1.0000 80 chrX:14169819-14169899 1.0000 80 chrII:13199824-13199904 1.0000 80 chrX:10963821-10963901 1.0000 80 chrX:16209766-16209846 1.0000 80 chrIV:5967146-5967226 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/worm/inference_raw/MEME/RankLinear2.0_40_lsy-27/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/worm/fasta/RankLinear2.0_40/lsy-27.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.261 C 0.228 G 0.238 T 0.273 Background letter frequencies (from file dataset with add-one prior applied): A 0.261 C 0.228 G 0.238 T 0.273 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF TCGAACCC MEME-1 width = 8 sites = 51 llr = 432 E-value = 8.2e-022 ******************************************************************************** -------------------------------------------------------------------------------- Motif TCGAACCC MEME-1 Description -------------------------------------------------------------------------------- Simplified A :::a7::1 pos.-specific C :8::1997 probability G ::a:2::: matrix T a2:::111 bits 2.1 * 1.9 * * 1.7 * ** * 1.5 * ** ** Relative 1.3 **** ** Entropy 1.1 **** ** (12.2 bits) 0.9 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TCGAACCC consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCGAACCC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrI:9605806-9605886 13 1.20e-05 CCGCGTAGGT TCGAACCC TGCTCGCTGC chrV:15873900-15873980 28 1.20e-05 ATCGCGCACA TCGAACCC GTGGCATGCC chrV:19643169-19643249 22 1.20e-05 TGGGTGGGAA TCGAACCC GGAAGCTGTG chrIII:6887710-6887790 33 1.20e-05 CCTAGGGGAC TCGAACCC CTGACCTTAA chrIII:7642169-7642249 4 1.20e-05 GAA TCGAACCC CGGCCTTATG chrIV:6481148-6481228 67 1.20e-05 GGTCGCCGGT TCGAACCC GGCCAG chrX:15200780-15200860 52 1.20e-05 TCGGGGGGAA TCGAACCC CCGTCGAATG chrIV:16684386-16684466 12 1.20e-05 TCGGGGGGAA TCGAACCC CGGTCGAATG chrIV:14576627-14576707 10 1.20e-05 CGGGGGGAA TCGAACCC CCGTCGAATG chrX:14478888-14478968 4 1.20e-05 GGC TCGAACCC GCGACAACCA chrX:5451192-5451272 27 1.20e-05 CCTAGGGGAC TCGAACCC CTGACCTTAA chrX:16590421-16590501 28 1.20e-05 GGTCGCCGGT TCGAACCC GGCCAGGACC chrIV:5967146-5967226 68 2.29e-05 TGTCGCGGGT TCGAGCCC CGCAT chrI:6136606-6136686 45 2.29e-05 TGTCGCGGGT TCGAGCCC CGCATTGGGC chrI:11584776-11584856 65 2.29e-05 TGTCGCGGGT TCGAGCCC CGCATTGG chrV:15156699-15156779 37 2.29e-05 GGTTGGTGGT TCGAGCCC ACCCGGGAGC chrX:13781621-13781701 73 2.29e-05 TGTCGCGGGT TCGAGCCC chrIII:11353671-11353751 11 2.29e-05 GGTCGGTGGT TCGAGCCC GCCCGAGATC chrV:15191044-15191124 58 3.72e-05 CGCTGAGGAG TTGAACCC GCGTCTGTTG chrX:12890258-12890338 42 3.72e-05 GCACGGGGAA TTGAACCC CGGACTTCTC chrX:12458123-12458203 68 3.72e-05 GTATGGGGAA TTGAACCC CAGCC chrI:2514286-2514366 28 3.72e-05 GGAGGCGGAA TTGAACCC GTGGTGTTGC chrIV:322636-322716 11 3.72e-05 cggccgggaa ttgaaccc gggtctcgca chrV:16648730-16648810 51 3.72e-05 cggccgggaa ttgaaccc gggtctcgca chrX:16209766-16209846 18 5.09e-05 CGAACCGGAT TCGAACCA GTGACCTAAG chrX:3371425-3371505 12 5.09e-05 CATGCTGGAA TCGAACCA GCGACCTTCT chrI:6105757-6105837 5 5.09e-05 GGGG TCGAACCA GCGACCCGCT chrX:2549482-2549562 61 5.09e-05 CCGGGTGGGC TCGAACCA CCAACCTTTC chrIII:2030854-2030934 71 5.09e-05 GTACGGGGAG TCGAACCA GG chrV:16370163-16370243 39 6.13e-05 GGGGTTCGGC TCGACCCC CGCTGCCGCA chrIV:12086633-12086713 58 6.13e-05 GCCCACGAGT TCGACCCC CACTGCTTGC chrI:6164185-6164265 61 6.13e-05 GGTCGCAGGT TCGACCCC TGCTGGCGGC chrIII:6158829-6158909 12 9.00e-05 CCGCGTAGGT TCGAATCC TGCTGACTGC chrIV:7574067-7574147 46 9.00e-05 TGGCCCAAGT TCGAATCC CAAGCAGTGA chrX:6220069-6220149 16 9.00e-05 ACGGCAGGAT TCGAACCT ACAATCTTCT chrI:5843056-5843136 42 9.00e-05 ACGGCAGGAT TCGAACCT GCAATCTTCT chrIII:1163342-1163422 27 9.00e-05 CCAGCAGGGG TCGAACCT GCGACCTTGG chrX:13448839-13448919 49 1.04e-04 AGGATGAGAT TCGAACTC ACGCGGGGAA chrIV:2408571-2408651 64 1.04e-04 TCACGGGGAA TCGAACTC GCGAGCGTC chrV:6551804-6551884 65 1.04e-04 AGGATGAGAT TCGAACTC ACGCGGGG chrI:6212823-6212903 12 1.46e-04 CACAGTGGGA TTGAACCA GAGACCTGCT chrIV:7162696-7162776 58 1.46e-04 AAAGATCCTT TTGAACCA CAAACAGCCA chrI:9267123-9267203 53 1.72e-04 GATTGCAGGT TCGAGTCC TGCCGTGGTC chrX:3697769-3697849 41 1.72e-04 GGTCGTGAGT TCGAGCCT CACCGGGAGC chrX:5713683-5713763 23 1.72e-04 GGTCAGGGGT TCGAGTCC CCTAGGTGGC chrX:16590914-16590994 32 1.97e-04 CTGGCCGGGT TCGAACCG GCGACCTTCT chrV:7237308-7237388 8 2.32e-04 TTAAGAT TTGAACCT GGCGCGCTTT chrIV:7275355-7275435 5 2.32e-04 GACT TTGAATCC TGCGACCCGA chrX:1880837-1880917 11 2.42e-04 CCGGGACCTC TCGCACCC GAAGCGAGAA chrI:6082788-6082868 22 3.01e-04 TGGCGTGGAG TTGAACTC GGGAGCGGCG chrIV:15289656-15289736 73 3.26e-04 GGTAGCGCGT TCGACTCC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCGAACCC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:9605806-9605886 1.2e-05 12_[+1]_60 chrV:15873900-15873980 1.2e-05 27_[+1]_45 chrV:19643169-19643249 1.2e-05 21_[+1]_51 chrIII:6887710-6887790 1.2e-05 32_[+1]_40 chrIII:7642169-7642249 1.2e-05 3_[+1]_69 chrIV:6481148-6481228 1.2e-05 66_[+1]_6 chrX:15200780-15200860 1.2e-05 51_[+1]_21 chrIV:16684386-16684466 1.2e-05 11_[+1]_61 chrIV:14576627-14576707 1.2e-05 9_[+1]_63 chrX:14478888-14478968 1.2e-05 3_[+1]_69 chrX:5451192-5451272 1.2e-05 26_[+1]_46 chrX:16590421-16590501 1.2e-05 27_[+1]_45 chrIV:5967146-5967226 2.3e-05 67_[+1]_5 chrI:6136606-6136686 2.3e-05 44_[+1]_28 chrI:11584776-11584856 2.3e-05 64_[+1]_8 chrV:15156699-15156779 2.3e-05 36_[+1]_36 chrX:13781621-13781701 2.3e-05 72_[+1] chrIII:11353671-11353751 2.3e-05 10_[+1]_62 chrV:15191044-15191124 3.7e-05 57_[+1]_15 chrX:12890258-12890338 3.7e-05 41_[+1]_31 chrX:12458123-12458203 3.7e-05 67_[+1]_5 chrI:2514286-2514366 3.7e-05 27_[+1]_45 chrIV:322636-322716 3.7e-05 10_[+1]_62 chrV:16648730-16648810 3.7e-05 50_[+1]_22 chrX:16209766-16209846 5.1e-05 17_[+1]_55 chrX:3371425-3371505 5.1e-05 11_[+1]_61 chrI:6105757-6105837 5.1e-05 4_[+1]_68 chrX:2549482-2549562 5.1e-05 60_[+1]_12 chrIII:2030854-2030934 5.1e-05 70_[+1]_2 chrV:16370163-16370243 6.1e-05 38_[+1]_34 chrIV:12086633-12086713 6.1e-05 57_[+1]_15 chrI:6164185-6164265 6.1e-05 60_[+1]_12 chrIII:6158829-6158909 9e-05 11_[+1]_61 chrIV:7574067-7574147 9e-05 45_[+1]_27 chrX:6220069-6220149 9e-05 15_[+1]_57 chrI:5843056-5843136 9e-05 41_[+1]_31 chrIII:1163342-1163422 9e-05 26_[+1]_46 chrX:13448839-13448919 0.0001 48_[+1]_24 chrIV:2408571-2408651 0.0001 63_[+1]_9 chrV:6551804-6551884 0.0001 64_[+1]_8 chrI:6212823-6212903 0.00015 11_[+1]_61 chrIV:7162696-7162776 0.00015 57_[+1]_15 chrI:9267123-9267203 0.00017 52_[+1]_20 chrX:3697769-3697849 0.00017 40_[+1]_32 chrX:5713683-5713763 0.00017 22_[+1]_50 chrX:16590914-16590994 0.0002 31_[+1]_41 chrV:7237308-7237388 0.00023 7_[+1]_65 chrIV:7275355-7275435 0.00023 4_[+1]_68 chrX:1880837-1880917 0.00024 10_[+1]_62 chrI:6082788-6082868 0.0003 21_[+1]_51 chrIV:15289656-15289736 0.00033 72_[+1] -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCGAACCC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TCGAACCC width=8 seqs=51 chrI:9605806-9605886 ( 13) TCGAACCC 1 chrV:15873900-15873980 ( 28) TCGAACCC 1 chrV:19643169-19643249 ( 22) TCGAACCC 1 chrIII:6887710-6887790 ( 33) TCGAACCC 1 chrIII:7642169-7642249 ( 4) TCGAACCC 1 chrIV:6481148-6481228 ( 67) TCGAACCC 1 chrX:15200780-15200860 ( 52) TCGAACCC 1 chrIV:16684386-16684466 ( 12) TCGAACCC 1 chrIV:14576627-14576707 ( 10) TCGAACCC 1 chrX:14478888-14478968 ( 4) TCGAACCC 1 chrX:5451192-5451272 ( 27) TCGAACCC 1 chrX:16590421-16590501 ( 28) TCGAACCC 1 chrIV:5967146-5967226 ( 68) TCGAGCCC 1 chrI:6136606-6136686 ( 45) TCGAGCCC 1 chrI:11584776-11584856 ( 65) TCGAGCCC 1 chrV:15156699-15156779 ( 37) TCGAGCCC 1 chrX:13781621-13781701 ( 73) TCGAGCCC 1 chrIII:11353671-11353751 ( 11) TCGAGCCC 1 chrV:15191044-15191124 ( 58) TTGAACCC 1 chrX:12890258-12890338 ( 42) TTGAACCC 1 chrX:12458123-12458203 ( 68) TTGAACCC 1 chrI:2514286-2514366 ( 28) TTGAACCC 1 chrIV:322636-322716 ( 11) TTGAACCC 1 chrV:16648730-16648810 ( 51) TTGAACCC 1 chrX:16209766-16209846 ( 18) TCGAACCA 1 chrX:3371425-3371505 ( 12) TCGAACCA 1 chrI:6105757-6105837 ( 5) TCGAACCA 1 chrX:2549482-2549562 ( 61) TCGAACCA 1 chrIII:2030854-2030934 ( 71) TCGAACCA 1 chrV:16370163-16370243 ( 39) TCGACCCC 1 chrIV:12086633-12086713 ( 58) TCGACCCC 1 chrI:6164185-6164265 ( 61) TCGACCCC 1 chrIII:6158829-6158909 ( 12) TCGAATCC 1 chrIV:7574067-7574147 ( 46) TCGAATCC 1 chrX:6220069-6220149 ( 16) TCGAACCT 1 chrI:5843056-5843136 ( 42) TCGAACCT 1 chrIII:1163342-1163422 ( 27) TCGAACCT 1 chrX:13448839-13448919 ( 49) TCGAACTC 1 chrIV:2408571-2408651 ( 64) TCGAACTC 1 chrV:6551804-6551884 ( 65) TCGAACTC 1 chrI:6212823-6212903 ( 12) TTGAACCA 1 chrIV:7162696-7162776 ( 58) TTGAACCA 1 chrI:9267123-9267203 ( 53) TCGAGTCC 1 chrX:3697769-3697849 ( 41) TCGAGCCT 1 chrX:5713683-5713763 ( 23) TCGAGTCC 1 chrX:16590914-16590994 ( 32) TCGAACCG 1 chrV:7237308-7237388 ( 8) TTGAACCT 1 chrIV:7275355-7275435 ( 5) TTGAATCC 1 chrX:1880837-1880917 ( 11) TCGCACCC 1 chrI:6082788-6082868 ( 22) TTGAACTC 1 chrIV:15289656-15289736 ( 73) TCGACTCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCGAACCC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.1012 E= 8.2e-022 -1232 -1232 -1232 187 -1232 178 -1232 -34 -1232 -1232 207 -1232 191 -354 -1232 -1232 151 -154 -43 -1232 -1232 195 -1232 -121 -1232 201 -1232 -180 -93 171 -360 -148 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCGAACCC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 51 E= 8.2e-022 0.000000 0.000000 0.000000 1.000000 0.000000 0.784314 0.000000 0.215686 0.000000 0.000000 1.000000 0.000000 0.980392 0.019608 0.000000 0.000000 0.745098 0.078431 0.176471 0.000000 0.000000 0.882353 0.000000 0.117647 0.000000 0.921569 0.000000 0.078431 0.137255 0.745098 0.019608 0.098039 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCGAACCC MEME-1 regular expression -------------------------------------------------------------------------------- T[CT]GAACCC -------------------------------------------------------------------------------- Time 5.43 secs. ******************************************************************************** ******************************************************************************** MOTIF TAGCTCAG MEME-2 width = 8 sites = 21 llr = 206 E-value = 3.5e-006 ******************************************************************************** -------------------------------------------------------------------------------- Motif TAGCTCAG MEME-2 Description -------------------------------------------------------------------------------- Simplified A :7::::a: pos.-specific C :1:a:a:: probability G :1a:3::a matrix T a:::7::: bits 2.1 ** * * 1.9 * ** *** 1.7 * ** *** 1.5 * ** *** Relative 1.3 * ** *** Entropy 1.1 * ****** (14.1 bits) 0.9 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TAGCTCAG consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAGCTCAG MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIV:5967146-5967226 21 1.49e-05 GCCGCCCGGT TAGCTCAG TCGGTAGAGC chrX:12563727-12563807 68 1.49e-05 TGTGCCCTTA TAGCTCAG TGGTA chrX:6593535-6593615 68 1.49e-05 ACTGCCTCGA TAGCTCAG TTGGG chrII:5032730-5032810 47 1.49e-05 ATGGCCGCCA TAGCTCAG TCGGTTAGAG chrI:11505510-11505590 48 1.49e-05 ATCGGGGGTA TAGCTCAG TGGCAGAGCA chrV:9318203-9318283 6 1.49e-05 GGGTA TAGCTCAG GGGTAGAGCG chrX:4789095-4789175 44 1.49e-05 TGGGCCTCCT TAGCTCAG TTGGTAGAGC chrX:9238850-9238930 21 1.49e-05 AGCGGGGGTA TAGCTCAG TGGTAGAGCG chrX:7323759-7323839 1 1.49e-05 . TAGCTCAG TGGTAGAGCG chrI:6135788-6135868 49 1.49e-05 GTGCCGTCGA TAGCTCAG TTGGTAGAGC chrI:11584776-11584856 18 1.49e-05 GCCGCCCGGT TAGCTCAG TCGGTAGAGC chrX:13781621-13781701 26 1.49e-05 GCCGCCCGGT TAGCTCAG TCGGTAGAGC chrI:6164185-6164265 13 1.49e-05 TATGCCGCCA TAGCTCAG TCGGTTAGAG chrIV:12086633-12086713 11 2.80e-05 TCGTTCAGCG TAGCGCAG TTGGGTGTGC chrIII:1122369-1122449 72 2.80e-05 TGTTGCCGTT TAGCGCAG G chrI:3852-3932 15 4.10e-05 GCCATCCTTC TCGCTCAG AGAATGGATT chrV:2673982-2674062 35 5.47e-05 AGCGCCTCAT TGGCTCAG TGGCAGAGCG chrX:1345028-1345108 26 6.61e-05 ACAATGTCAT TCGCGCAG GGCAGCTGAG chrIII:2786011-2786091 68 6.61e-05 AGTGTGTGGC TCGCGCAG CGTCT chrIV:7574067-7574147 1 7.79e-05 . TGGCGCAG GCGGTTACTG chrI:2410100-2410180 31 7.79e-05 ACTGCGCGTC TGGCGCAG CCGGTTGGCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAGCTCAG MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:5967146-5967226 1.5e-05 20_[+2]_52 chrX:12563727-12563807 1.5e-05 67_[+2]_5 chrX:6593535-6593615 1.5e-05 67_[+2]_5 chrII:5032730-5032810 1.5e-05 46_[+2]_26 chrI:11505510-11505590 1.5e-05 47_[+2]_25 chrV:9318203-9318283 1.5e-05 5_[+2]_67 chrX:4789095-4789175 1.5e-05 43_[+2]_29 chrX:9238850-9238930 1.5e-05 20_[+2]_52 chrX:7323759-7323839 1.5e-05 [+2]_72 chrI:6135788-6135868 1.5e-05 48_[+2]_24 chrI:11584776-11584856 1.5e-05 17_[+2]_55 chrX:13781621-13781701 1.5e-05 25_[+2]_47 chrI:6164185-6164265 1.5e-05 12_[+2]_60 chrIV:12086633-12086713 2.8e-05 10_[+2]_62 chrIII:1122369-1122449 2.8e-05 71_[+2]_1 chrI:3852-3932 4.1e-05 14_[+2]_58 chrV:2673982-2674062 5.5e-05 34_[+2]_38 chrX:1345028-1345108 6.6e-05 25_[+2]_47 chrIII:2786011-2786091 6.6e-05 67_[+2]_5 chrIV:7574067-7574147 7.8e-05 [+2]_72 chrI:2410100-2410180 7.8e-05 30_[+2]_42 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAGCTCAG MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TAGCTCAG width=8 seqs=21 chrIV:5967146-5967226 ( 21) TAGCTCAG 1 chrX:12563727-12563807 ( 68) TAGCTCAG 1 chrX:6593535-6593615 ( 68) TAGCTCAG 1 chrII:5032730-5032810 ( 47) TAGCTCAG 1 chrI:11505510-11505590 ( 48) TAGCTCAG 1 chrV:9318203-9318283 ( 6) TAGCTCAG 1 chrX:4789095-4789175 ( 44) TAGCTCAG 1 chrX:9238850-9238930 ( 21) TAGCTCAG 1 chrX:7323759-7323839 ( 1) TAGCTCAG 1 chrI:6135788-6135868 ( 49) TAGCTCAG 1 chrI:11584776-11584856 ( 18) TAGCTCAG 1 chrX:13781621-13781701 ( 26) TAGCTCAG 1 chrI:6164185-6164265 ( 13) TAGCTCAG 1 chrIV:12086633-12086713 ( 11) TAGCGCAG 1 chrIII:1122369-1122449 ( 72) TAGCGCAG 1 chrI:3852-3932 ( 15) TCGCTCAG 1 chrV:2673982-2674062 ( 35) TGGCTCAG 1 chrX:1345028-1345108 ( 26) TCGCGCAG 1 chrIII:2786011-2786091 ( 68) TCGCGCAG 1 chrIV:7574067-7574147 ( 1) TGGCGCAG 1 chrI:2410100-2410180 ( 31) TGGCGCAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAGCTCAG MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.0668 E= 3.5e-006 -1104 -1104 -1104 187 145 -67 -73 -1104 -1104 -1104 207 -1104 -1104 213 -1104 -1104 -1104 -1104 26 139 -1104 213 -1104 -1104 194 -1104 -1104 -1104 -1104 -1104 207 -1104 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAGCTCAG MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 21 E= 3.5e-006 0.000000 0.000000 0.000000 1.000000 0.714286 0.142857 0.142857 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.285714 0.714286 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAGCTCAG MEME-2 regular expression -------------------------------------------------------------------------------- TAGC[TG]CAG -------------------------------------------------------------------------------- Time 9.24 secs. ******************************************************************************** ******************************************************************************** MOTIF GGTAGAGC MEME-3 width = 8 sites = 18 llr = 179 E-value = 1.1e-003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGTAGAGC MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::a:8:: pos.-specific C ::2::2:a probability G a9::a:a: matrix T :18::::: bits 2.1 * * ** 1.9 * ** ** 1.7 * ** ** 1.5 ** ** ** Relative 1.3 ** ***** Entropy 1.1 ******** (14.3 bits) 0.9 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GGTAGAGC consensus C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTAGAGC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIV:5967146-5967226 31 1.36e-05 TAGCTCAGTC GGTAGAGC ACCAGACTCT chrI:9619946-9620026 71 1.36e-05 TGCAAGGTAC GGTAGAGC AT chrV:9318203-9318283 15 1.36e-05 ATAGCTCAGG GGTAGAGC GCTCGCTTCG chrX:4789095-4789175 54 1.36e-05 TAGCTCAGTT GGTAGAGC GTGAGACTTT chrI:6136606-6136686 8 1.36e-05 CTCAGTC GGTAGAGC ACCAGACTCT chrX:9238850-9238930 30 1.36e-05 ATAGCTCAGT GGTAGAGC GCTCCCTTAG chrX:7323759-7323839 10 1.36e-05 TAGCTCAGT GGTAGAGC GCTCCCTTAG chrI:6135788-6135868 59 1.36e-05 TAGCTCAGTT GGTAGAGC GGAGGACTGT chrI:11584776-11584856 28 1.36e-05 TAGCTCAGTC GGTAGAGC ACCAGACTCT chrX:13781621-13781701 36 1.36e-05 TAGCTCAGTC GGTAGAGC ACCAGACTCT chrX:14804890-14804970 3 2.50e-05 GT GGCAGAGC ATTCGACTGC chrI:11505510-11505590 57 2.50e-05 ATAGCTCAGT GGCAGAGC ATTCGACTGC chrV:2673982-2674062 44 2.50e-05 TTGGCTCAGT GGCAGAGC GTCTGTCTAG chrII:14617053-14617133 44 3.69e-05 TGGCGCAGGC GGTAGCGC ATTTCGCTGT chrIV:15289656-15289736 63 3.69e-05 TTGGCGCAAT GGTAGCGC GTTCGACTCC chrII:5032730-5032810 58 5.25e-05 AGCTCAGTCG GTTAGAGC GTGGGTCTAA chrI:6164185-6164265 24 5.25e-05 AGCTCAGTCG GTTAGAGC GTGGGTCTAA chrX:3697769-3697849 4 6.24e-05 GTA GGCAGCGC GTCAGTCTCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTAGAGC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:5967146-5967226 1.4e-05 30_[+3]_42 chrI:9619946-9620026 1.4e-05 70_[+3]_2 chrV:9318203-9318283 1.4e-05 14_[+3]_58 chrX:4789095-4789175 1.4e-05 53_[+3]_19 chrI:6136606-6136686 1.4e-05 7_[+3]_65 chrX:9238850-9238930 1.4e-05 29_[+3]_43 chrX:7323759-7323839 1.4e-05 9_[+3]_63 chrI:6135788-6135868 1.4e-05 58_[+3]_14 chrI:11584776-11584856 1.4e-05 27_[+3]_45 chrX:13781621-13781701 1.4e-05 35_[+3]_37 chrX:14804890-14804970 2.5e-05 2_[+3]_70 chrI:11505510-11505590 2.5e-05 56_[+3]_16 chrV:2673982-2674062 2.5e-05 43_[+3]_29 chrII:14617053-14617133 3.7e-05 43_[+3]_29 chrIV:15289656-15289736 3.7e-05 62_[+3]_10 chrII:5032730-5032810 5.2e-05 57_[+3]_15 chrI:6164185-6164265 5.2e-05 23_[+3]_49 chrX:3697769-3697849 6.2e-05 3_[+3]_69 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTAGAGC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGTAGAGC width=8 seqs=18 chrIV:5967146-5967226 ( 31) GGTAGAGC 1 chrI:9619946-9620026 ( 71) GGTAGAGC 1 chrV:9318203-9318283 ( 15) GGTAGAGC 1 chrX:4789095-4789175 ( 54) GGTAGAGC 1 chrI:6136606-6136686 ( 8) GGTAGAGC 1 chrX:9238850-9238930 ( 30) GGTAGAGC 1 chrX:7323759-7323839 ( 10) GGTAGAGC 1 chrI:6135788-6135868 ( 59) GGTAGAGC 1 chrI:11584776-11584856 ( 28) GGTAGAGC 1 chrX:13781621-13781701 ( 36) GGTAGAGC 1 chrX:14804890-14804970 ( 3) GGCAGAGC 1 chrI:11505510-11505590 ( 57) GGCAGAGC 1 chrV:2673982-2674062 ( 44) GGCAGAGC 1 chrII:14617053-14617133 ( 44) GGTAGCGC 1 chrIV:15289656-15289736 ( 63) GGTAGCGC 1 chrII:5032730-5032810 ( 58) GTTAGAGC 1 chrI:6164185-6164265 ( 24) GTTAGAGC 1 chrX:3697769-3697849 ( 4) GGCAGCGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTAGAGC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.8329 E= 1.1e-003 -1081 -1081 207 -1081 -1081 -1081 190 -130 -1081 -4 -1081 151 194 -1081 -1081 -1081 -1081 -1081 207 -1081 167 -45 -1081 -1081 -1081 -1081 207 -1081 -1081 213 -1081 -1081 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTAGAGC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 18 E= 1.1e-003 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.888889 0.111111 0.000000 0.222222 0.000000 0.777778 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.833333 0.166667 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTAGAGC MEME-3 regular expression -------------------------------------------------------------------------------- GG[TC]AGAGC -------------------------------------------------------------------------------- Time 13.28 secs. ******************************************************************************** ******************************************************************************** MOTIF AGTGGTTA MEME-4 width = 8 sites = 14 llr = 147 E-value = 1.0e-002 ******************************************************************************** -------------------------------------------------------------------------------- Motif AGTGGTTA MEME-4 Description -------------------------------------------------------------------------------- Simplified A a::::::9 pos.-specific C :::::::: probability G :a:aa::1 matrix T ::a::aa: bits 2.1 * ** 1.9 ******* 1.7 ******* 1.5 ******* Relative 1.3 ******** Entropy 1.1 ******** (15.1 bits) 0.9 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AGTGGTTA consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGTGGTTA MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrII:10840233-10840313 28 1.87e-05 CGCGTGGTCT AGTGGTTA GCATGTGTGC chrX:13306976-13307056 71 1.87e-05 CCTATGGTGT AGTGGTTA TC chrX:5707989-5708069 52 1.87e-05 CAGGTGGCCG AGTGGTTA AGGCGATGGA chrX:4444274-4444354 1 1.87e-05 . AGTGGTTA GGATTCGTGG chrIV:16388421-16388501 48 1.87e-05 TGCGTAGTAT AGTGGTTA GTACTCCACG chrX:8646464-8646544 29 1.87e-05 CATGTGGTCT AGTGGTTA GGATTCGTGG chrIV:6481148-6481228 26 1.87e-05 CCTGTGGTGT AGTGGTTA TCACGTCTGC chrX:8971546-8971626 67 1.87e-05 GTCATGTCCG AGTGGTTA AGGAGA chrX:12843668-12843748 33 1.87e-05 CTCGTGGTGT AGTGGTTA TCACATCTGT chrV:53442-53522 47 1.87e-05 cgcatggccg agtggtta gtacgtatgc chrX:13442619-13442699 37 1.87e-05 CAGGTGGCCG AGTGGTTA AGGCGATGGA chrI:12065828-12065908 50 1.87e-05 CTCGTGGTGT AGTGGTTA TCACATCTGT chrI:5706969-5707049 27 3.57e-05 TTGCTGGCCG AGTGGTTG TGCGCCCGGT chrIII:502707-502787 35 3.57e-05 TGCGTGGATC AGTGGTTG TGGTCGCCGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGTGGTTA MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:10840233-10840313 1.9e-05 27_[+4]_45 chrX:13306976-13307056 1.9e-05 70_[+4]_2 chrX:5707989-5708069 1.9e-05 51_[+4]_21 chrX:4444274-4444354 1.9e-05 [+4]_72 chrIV:16388421-16388501 1.9e-05 47_[+4]_25 chrX:8646464-8646544 1.9e-05 28_[+4]_44 chrIV:6481148-6481228 1.9e-05 25_[+4]_47 chrX:8971546-8971626 1.9e-05 66_[+4]_6 chrX:12843668-12843748 1.9e-05 32_[+4]_40 chrV:53442-53522 1.9e-05 46_[+4]_26 chrX:13442619-13442699 1.9e-05 36_[+4]_36 chrI:12065828-12065908 1.9e-05 49_[+4]_23 chrI:5706969-5707049 3.6e-05 26_[+4]_46 chrIII:502707-502787 3.6e-05 34_[+4]_38 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGTGGTTA MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AGTGGTTA width=8 seqs=14 chrII:10840233-10840313 ( 28) AGTGGTTA 1 chrX:13306976-13307056 ( 71) AGTGGTTA 1 chrX:5707989-5708069 ( 52) AGTGGTTA 1 chrX:4444274-4444354 ( 1) AGTGGTTA 1 chrIV:16388421-16388501 ( 48) AGTGGTTA 1 chrX:8646464-8646544 ( 29) AGTGGTTA 1 chrIV:6481148-6481228 ( 26) AGTGGTTA 1 chrX:8971546-8971626 ( 67) AGTGGTTA 1 chrX:12843668-12843748 ( 33) AGTGGTTA 1 chrV:53442-53522 ( 47) AGTGGTTA 1 chrX:13442619-13442699 ( 37) AGTGGTTA 1 chrI:12065828-12065908 ( 50) AGTGGTTA 1 chrI:5706969-5707049 ( 27) AGTGGTTG 1 chrIII:502707-502787 ( 35) AGTGGTTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGTGGTTA MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.1909 E= 1.0e-002 194 -1045 -1045 -1045 -1045 -1045 207 -1045 -1045 -1045 -1045 187 -1045 -1045 207 -1045 -1045 -1045 207 -1045 -1045 -1045 -1045 187 -1045 -1045 -1045 187 171 -1045 -73 -1045 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGTGGTTA MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 14 E= 1.0e-002 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.857143 0.000000 0.142857 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGTGGTTA MEME-4 regular expression -------------------------------------------------------------------------------- AGTGGTTA -------------------------------------------------------------------------------- Time 17.00 secs. ******************************************************************************** ******************************************************************************** MOTIF TTTTTDTT MEME-5 width = 8 sites = 52 llr = 395 E-value = 1.0e-002 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTTTTDTT MEME-5 Description -------------------------------------------------------------------------------- Simplified A 1:2::41: pos.-specific C 1::::::1 probability G :::::3:: matrix T 8a8aa399 bits 2.1 1.9 * ** 1.7 * ** 1.5 * ** ** Relative 1.3 * ** ** Entropy 1.1 **** ** (10.9 bits) 0.9 ***** ** 0.6 ***** ** 0.4 ***** ** 0.2 ******** 0.0 -------- Multilevel TTTTTATT consensus A T sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTDTT MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrV:7237308-7237388 59 2.95e-05 GCttttttgt tttttatt tgtttttttt chrX:16604623-16604703 7 2.95e-05 GAAACA TTTTTATT TATTCTAGGC chrX:5713683-5713763 46 2.95e-05 GTGGCTTGAC TTTTTATT GTTCCAAAGT chrIII:1424514-1424594 54 2.95e-05 ACGCAGAAAA TTTTTATT TTTCTTGTTT chrM:4695-4775 68 2.95e-05 GCCAGGTTAT TTTTTATT TTTTT chrM:6214-6294 33 2.95e-05 TTGGAAGGAT TTTTTATT TATCTACGGG chrV:5667479-5667559 59 2.95e-05 CATGATGGCT TTTTTATT TTCTTGTTAG chrM:7228-7308 46 2.95e-05 TCATATAAGG TTTTTATT ATTATCACTG chrX:14228854-14228934 21 2.95e-05 TGCAAGTATT TTTTTATT TCAATCATAC chrX:5485667-5485747 39 2.95e-05 TAAGAACATT TTTTTATT CTTTTGATCC chrM:3624-3704 11 2.95e-05 CTATTACAAT TTTTTATT ATTTTATTGA chrM:11490-11570 32 2.95e-05 AGAATTCATT tttttatt atgatattga chrM:7804-7884 14 2.95e-05 AAAAGTAAAA TTTTTATT TTAAGTATTC chrV:15465156-15465236 15 8.72e-05 ATTTTTTTGT TTTTTTTT TCATTGTTGA chrIII:2768800-2768880 66 8.72e-05 CGCACGTGGT TTTTTTTT AATTATT chrX:3697769-3697849 64 8.72e-05 GGAGCAATCT TTTTTGTT TTGTTTTTT chrX:4444274-4444354 65 8.72e-05 GGGAAGTTTC TTTTTGTT TATTTTTG chrX:14115610-14115690 44 8.72e-05 AGCCCCTCTT TTTTTGTT ATAGGCAAAC chrV:12318255-12318335 16 8.72e-05 GCAAAATAAT TTTTTTTT GAAAAAAAAA chrI:6136606-6136686 69 8.72e-05 GGGCTCATCT TTTTTGTT TTTT chrII:5873804-5873884 40 8.72e-05 GTCGCATTCG TTTTTGTT GCCGGAATCG chrM:9276-9356 44 1.15e-04 TAATTAGAGA TTATTATT CTAATAGAAG chrM:9077-9157 34 1.15e-04 AGTATTTATT TTATTATT TATTGGGGTA chrV:16648730-16648810 13 1.15e-04 TGACTATAGT TTATTATT TTTATCAAAA chrI:13653945-13654025 71 1.95e-04 CATACTTGCA TTATTTTT CT chrIII:5706416-5706496 65 1.95e-04 GCCAATCGAT TTATTTTT GATTTTGA chrIII:7141357-7141437 26 1.95e-04 CTGCTCGACA CTTTTATT GGTTTTAACC chrM:5334-5414 60 1.95e-04 TCGTAACATT TTATTTTT TTGCTTTAGT chrM:10862-10942 24 1.95e-04 ATAATTTGTG CTTTTATT GAGTTCCAGT chrM:2907-2987 19 1.95e-04 ACTTTGTTAA CTTTTATT TCAAGAGAAA chrM:5748-5828 48 1.95e-04 TACGAATTAT TTATTTTT ACACTATTTT chrM:9708-9788 61 1.95e-04 GTTTGTTACT TTATTGTT TGGATATTTA chrX:16590421-16590501 51 1.95e-04 GGACCTAGTT TTATTGTT GTTTTACATT chrM:13158-13238 18 1.95e-04 GGGGTACACC TTATTTTT AAGCAGTGGT chrIII:13224635-13224715 27 2.23e-04 GCTTTTTTAA ATTTTATT AAAATAAGCT chrIV:11602298-11602378 70 2.72e-04 ACTGAATTTT CTTTTTTT ACT chrI:4967583-4967663 12 2.72e-04 ATTATCCACG CTTTTTTT CAGAAATTTT chrX:11872387-11872467 24 2.72e-04 TGAGTGACAT CTTTTGTT AGCATATACA chrII:9713269-9713349 36 2.72e-04 GCGGTGGTGT CTTTTTTT CAAAATGCAT chrIV:11025981-11026061 9 3.53e-04 GCGCAAAG ATTTTGTT TGCTCCCAGA chrIII:6158829-6158909 57 3.53e-04 TTTTTCGCAC ATTTTTTT CGTTGTAACT chrI:5165007-5165087 73 3.53e-04 AGAGATCCTA ATTTTTTT chrII:11968425-11968505 73 3.53e-04 ATTTCGCTCA TTTTTCTT chrM:168-248 24 3.53e-04 AAAAGAAGTT TTTTTCTT ATCTTTTCAC chrX:2549482-2549562 28 4.29e-04 ATTTCTTACT TTTTTAAT CTAAAAATTT chrII:10542113-10542193 67 4.29e-04 AAAAAACATG TTTTTAAT CGAAGT chrII:13199824-13199904 8 5.04e-04 ACCGCCG TTTTTGTC CAGGAGAGCG chrI:5986364-5986444 46 5.04e-04 ATTTTGTGTC TTTTTGTC TTTTCTGTCG chrIV:991219-991299 16 5.04e-04 CGAAACCTCG TTTTTGTC GGCTGCGGGA chrX:15200780-15200860 19 6.06e-04 AAAGTAAAAA TTTTTGAT AAAAGGTTTC chrI:6756471-6756551 19 6.83e-04 AAAACAAAAA ATATTTTT CGATTTAAAC chrX:16558969-16559049 57 6.83e-04 ACTTTTTTGA ATATTTTT TCATGATTGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTDTT MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:7237308-7237388 2.9e-05 58_[+5]_14 chrX:16604623-16604703 2.9e-05 6_[+5]_66 chrX:5713683-5713763 2.9e-05 45_[+5]_27 chrIII:1424514-1424594 2.9e-05 53_[+5]_19 chrM:4695-4775 2.9e-05 67_[+5]_5 chrM:6214-6294 2.9e-05 32_[+5]_40 chrV:5667479-5667559 2.9e-05 58_[+5]_14 chrM:7228-7308 2.9e-05 45_[+5]_27 chrX:14228854-14228934 2.9e-05 20_[+5]_52 chrX:5485667-5485747 2.9e-05 38_[+5]_34 chrM:3624-3704 2.9e-05 10_[+5]_62 chrM:11490-11570 2.9e-05 31_[+5]_41 chrM:7804-7884 2.9e-05 13_[+5]_59 chrV:15465156-15465236 8.7e-05 14_[+5]_58 chrIII:2768800-2768880 8.7e-05 65_[+5]_7 chrX:3697769-3697849 8.7e-05 63_[+5]_9 chrX:4444274-4444354 8.7e-05 64_[+5]_8 chrX:14115610-14115690 8.7e-05 43_[+5]_29 chrV:12318255-12318335 8.7e-05 15_[+5]_57 chrI:6136606-6136686 8.7e-05 68_[+5]_4 chrII:5873804-5873884 8.7e-05 39_[+5]_33 chrM:9276-9356 0.00012 43_[+5]_29 chrM:9077-9157 0.00012 33_[+5]_39 chrV:16648730-16648810 0.00012 12_[+5]_60 chrI:13653945-13654025 0.0002 70_[+5]_2 chrIII:5706416-5706496 0.0002 64_[+5]_8 chrIII:7141357-7141437 0.0002 25_[+5]_47 chrM:5334-5414 0.0002 59_[+5]_13 chrM:10862-10942 0.0002 23_[+5]_49 chrM:2907-2987 0.0002 18_[+5]_54 chrM:5748-5828 0.0002 47_[+5]_25 chrM:9708-9788 0.0002 60_[+5]_12 chrX:16590421-16590501 0.0002 50_[+5]_22 chrM:13158-13238 0.0002 17_[+5]_55 chrIII:13224635-13224715 0.00022 26_[+5]_46 chrIV:11602298-11602378 0.00027 69_[+5]_3 chrI:4967583-4967663 0.00027 11_[+5]_61 chrX:11872387-11872467 0.00027 23_[+5]_49 chrII:9713269-9713349 0.00027 35_[+5]_37 chrIV:11025981-11026061 0.00035 8_[+5]_64 chrIII:6158829-6158909 0.00035 56_[+5]_16 chrI:5165007-5165087 0.00035 72_[+5] chrII:11968425-11968505 0.00035 72_[+5] chrM:168-248 0.00035 23_[+5]_49 chrX:2549482-2549562 0.00043 27_[+5]_45 chrII:10542113-10542193 0.00043 66_[+5]_6 chrII:13199824-13199904 0.0005 7_[+5]_65 chrI:5986364-5986444 0.0005 45_[+5]_27 chrIV:991219-991299 0.0005 15_[+5]_57 chrX:15200780-15200860 0.00061 18_[+5]_54 chrI:6756471-6756551 0.00068 18_[+5]_54 chrX:16558969-16559049 0.00068 56_[+5]_16 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTDTT MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTTTTDTT width=8 seqs=52 chrV:7237308-7237388 ( 59) TTTTTATT 1 chrX:16604623-16604703 ( 7) TTTTTATT 1 chrX:5713683-5713763 ( 46) TTTTTATT 1 chrIII:1424514-1424594 ( 54) TTTTTATT 1 chrM:4695-4775 ( 68) TTTTTATT 1 chrM:6214-6294 ( 33) TTTTTATT 1 chrV:5667479-5667559 ( 59) TTTTTATT 1 chrM:7228-7308 ( 46) TTTTTATT 1 chrX:14228854-14228934 ( 21) TTTTTATT 1 chrX:5485667-5485747 ( 39) TTTTTATT 1 chrM:3624-3704 ( 11) TTTTTATT 1 chrM:11490-11570 ( 32) TTTTTATT 1 chrM:7804-7884 ( 14) TTTTTATT 1 chrV:15465156-15465236 ( 15) TTTTTTTT 1 chrIII:2768800-2768880 ( 66) TTTTTTTT 1 chrX:3697769-3697849 ( 64) TTTTTGTT 1 chrX:4444274-4444354 ( 65) TTTTTGTT 1 chrX:14115610-14115690 ( 44) TTTTTGTT 1 chrV:12318255-12318335 ( 16) TTTTTTTT 1 chrI:6136606-6136686 ( 69) TTTTTGTT 1 chrII:5873804-5873884 ( 40) TTTTTGTT 1 chrM:9276-9356 ( 44) TTATTATT 1 chrM:9077-9157 ( 34) TTATTATT 1 chrV:16648730-16648810 ( 13) TTATTATT 1 chrI:13653945-13654025 ( 71) TTATTTTT 1 chrIII:5706416-5706496 ( 65) TTATTTTT 1 chrIII:7141357-7141437 ( 26) CTTTTATT 1 chrM:5334-5414 ( 60) TTATTTTT 1 chrM:10862-10942 ( 24) CTTTTATT 1 chrM:2907-2987 ( 19) CTTTTATT 1 chrM:5748-5828 ( 48) TTATTTTT 1 chrM:9708-9788 ( 61) TTATTGTT 1 chrX:16590421-16590501 ( 51) TTATTGTT 1 chrM:13158-13238 ( 18) TTATTTTT 1 chrIII:13224635-13224715 ( 27) ATTTTATT 1 chrIV:11602298-11602378 ( 70) CTTTTTTT 1 chrI:4967583-4967663 ( 12) CTTTTTTT 1 chrX:11872387-11872467 ( 24) CTTTTGTT 1 chrII:9713269-9713349 ( 36) CTTTTTTT 1 chrIV:11025981-11026061 ( 9) ATTTTGTT 1 chrIII:6158829-6158909 ( 57) ATTTTTTT 1 chrI:5165007-5165087 ( 73) ATTTTTTT 1 chrII:11968425-11968505 ( 73) TTTTTCTT 1 chrM:168-248 ( 24) TTTTTCTT 1 chrX:2549482-2549562 ( 28) TTTTTAAT 1 chrII:10542113-10542193 ( 67) TTTTTAAT 1 chrII:13199824-13199904 ( 8) TTTTTGTC 1 chrI:5986364-5986444 ( 46) TTTTTGTC 1 chrIV:991219-991299 ( 16) TTTTTGTC 1 chrX:15200780-15200860 ( 19) TTTTTGAT 1 chrI:6756471-6756551 ( 19) ATATTTTT 1 chrX:16558969-16559049 ( 57) ATATTTTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTDTT MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.61772 E= 1.0e-002 -118 -76 -1234 146 -1234 -1234 -1234 187 -18 -1234 -1234 149 -1234 -1234 -1234 187 -1234 -1234 -1234 187 70 -257 7 8 -218 -1234 -1234 179 -1234 -198 -1234 179 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTDTT MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 52 E= 1.0e-002 0.115385 0.134615 0.000000 0.750000 0.000000 0.000000 0.000000 1.000000 0.230769 0.000000 0.000000 0.769231 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.423077 0.038462 0.250000 0.288462 0.057692 0.000000 0.000000 0.942308 0.000000 0.057692 0.000000 0.942308 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTDTT MEME-5 regular expression -------------------------------------------------------------------------------- TT[TA]TT[ATG]TT -------------------------------------------------------------------------------- Time 20.71 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrM:13158-13238 8.05e-02 80 chrM:168-248 1.30e-01 80 chrM:8688-8768 1.94e-01 80 chrX:16590421-16590501 4.42e-03 27_[+1(1.20e-05)]_45 chrX:5451192-5451272 5.99e-02 26_[+1(1.20e-05)]_46 chrM:9708-9788 1.14e-01 80 chrM:7804-7884 1.92e-01 13_[+5(2.95e-05)]_59 chrV:11177029-11177109 5.33e-01 80 chrM:5748-5828 4.56e-01 80 chrX:8819997-8820077 9.02e-01 80 chrI:3198969-3199049 4.85e-01 80 chrM:11490-11570 9.05e-02 31_[+5(2.95e-05)]_41 chrII:5701582-5701662 7.09e-01 80 chrIV:4880709-4880789 1.25e-01 80 chrIV:7316742-7316822 8.16e-01 80 chrM:1882-1962 4.36e-01 80 chrM:10297-10377 4.91e-01 80 chrIII:11353671-11353751 1.02e-02 10_[+1(2.29e-05)]_62 chrM:3624-3704 6.39e-03 10_[+5(2.95e-05)]_62 chrII:9713269-9713349 3.23e-01 80 chrM:2907-2987 4.94e-01 80 chrI:8487411-8487491 5.32e-01 80 chrX:13038864-13038944 4.15e-01 80 chrX:5485667-5485747 7.78e-03 38_[+5(2.95e-05)]_34 chrI:12324773-12324853 6.93e-01 80 chrV:6551804-6551884 4.25e-02 80 chrIII:13016124-13016204 8.97e-01 80 chrX:14228854-14228934 1.27e-01 20_[+5(2.95e-05)]_52 chrIV:14764850-14764930 3.20e-01 80 chrM:8209-8289 7.20e-01 80 chrX:3793498-3793578 8.30e-01 80 chrM:6414-6494 3.75e-01 80 chrI:6513880-6513960 9.16e-01 80 chrIII:9617061-9617141 8.11e-01 80 chrIV:7162696-7162776 1.99e-01 80 chrIV:991219-991299 3.46e-01 80 chrM:7028-7108 4.08e-01 80 chrX:7773780-7773860 3.00e-01 80 chrII:11968425-11968505 6.42e-02 80 chrX:14478888-14478968 7.79e-02 3_[+1(1.20e-05)]_69 chrIV:15289656-15289736 4.31e-03 62_[+3(3.69e-05)]_10 chrIV:15931279-15931359 7.05e-01 80 chrIV:15693429-15693509 3.48e-02 80 chrIV:15476416-15476496 1.97e-01 80 chrV:16225689-16225769 3.54e-01 80 chrIV:4347859-4347939 6.15e-01 80 chrX:16558969-16559049 2.79e-01 80 chrIII:4176347-4176427 8.64e-01 80 chrI:852181-852261 8.60e-01 80 chrM:998-1078 3.67e-01 80 chrV:16648730-16648810 6.88e-03 50_[+1(3.72e-05)]_22 chrI:12065828-12065908 7.47e-02 49_[+4(1.87e-05)]_23 chrM:7228-7308 1.13e-01 45_[+5(2.95e-05)]_27 chrM:10862-10942 1.40e-02 80 chrIV:12417033-12417113 8.21e-01 80 chrX:6286245-6286325 5.64e-01 80 chrV:5667479-5667559 1.19e-02 58_[+5(2.95e-05)]_14 chrIII:7891956-7892036 8.84e-01 80 chrV:10361943-10362023 9.40e-01 80 chrIV:14576627-14576707 5.46e-02 9_[+1(1.20e-05)]_63 chrX:8608950-8609030 5.88e-01 80 chrII:5823677-5823757 3.93e-01 80 chrIV:16684386-16684466 7.31e-02 11_[+1(1.20e-05)]_61 chrIV:867008-867088 6.27e-02 80 chrIII:2030854-2030934 7.99e-02 70_[+1(5.09e-05)]_2 chrII:5714967-5715047 6.33e-01 80 chrIII:9104259-9104339 4.55e-01 80 chrIII:13224635-13224715 4.13e-01 80 chrIII:89317-89397 8.03e-01 80 chrIV:7275355-7275435 1.97e-01 80 chrII:13521420-13521500 8.05e-01 80 chrIII:1163342-1163422 9.06e-02 26_[+1(9.00e-05)]_46 chrI:6164185-6164265 5.78e-05 12_[+2(1.49e-05)]_3_[+3(5.25e-05)]_\ 29_[+1(6.13e-05)]_12 chrM:9077-9157 2.39e-01 80 chrI:6756471-6756551 6.13e-02 80 chrV:19722970-19723050 5.19e-01 80 chrII:4904398-4904478 7.08e-01 80 chrX:15200780-15200860 1.36e-02 51_[+1(1.20e-05)]_21 chrV:11412289-11412369 3.52e-01 80 chrX:13781621-13781701 3.11e-06 25_[+2(1.49e-05)]_2_[+3(1.36e-05)]_\ 29_[+1(2.29e-05)] chrII:9054776-9054856 5.32e-01 80 chrV:15156699-15156779 3.05e-03 36_[+1(2.29e-05)]_36 chrX:10148573-10148653 8.89e-01 80 chrI:11584776-11584856 3.11e-06 17_[+2(1.49e-05)]_2_[+3(1.36e-05)]_\ 29_[+1(2.29e-05)]_8 chrI:6135788-6135868 2.10e-05 48_[+2(1.49e-05)]_2_[+3(1.36e-05)]_\ 14 chrM:2323-2403 4.77e-01 80 chrIV:14225084-14225164 4.70e-01 80 chrM:6214-6294 8.67e-02 32_[+5(2.95e-05)]_40 chrIV:4650773-4650853 1.30e-01 80 chrI:8245631-8245711 8.23e-01 80 chrII:5873804-5873884 3.96e-02 39_[+5(8.72e-05)]_33 chrM:4695-4775 2.90e-02 67_[+5(2.95e-05)]_5 chrIII:2031373-2031453 5.29e-01 80 chrX:325799-325879 2.60e-01 80 chrM:12410-12490 2.04e-01 80 chrX:11872387-11872467 8.13e-02 80 chrM:5334-5414 2.04e-01 80 chrIV:14327128-14327208 5.89e-01 80 chrI:5127602-5127682 4.72e-01 80 chrIV:322636-322716 1.18e-01 10_[+1(3.72e-05)]_62 chrII:12541757-12541837 8.84e-01 80 chrX:10132907-10132987 5.71e-01 80 chrII:6197011-6197091 9.76e-01 80 chrI:3852-3932 5.38e-02 14_[+2(4.10e-05)]_58 chrX:7323759-7323839 6.40e-05 [+2(1.49e-05)]_1_[+3(1.36e-05)]_63 chrM:9276-9356 9.85e-02 80 chrX:9238850-9238930 1.33e-04 20_[+2(1.49e-05)]_1_[+3(1.36e-05)]_\ 43 chrV:15554047-15554127 4.79e-01 80 chrI:6136606-6136686 9.42e-06 7_[+3(1.36e-05)]_29_[+1(2.29e-05)]_\ 16_[+5(8.72e-05)]_4 chrV:11534742-11534822 2.18e-01 80 chrI:5843056-5843136 2.30e-01 41_[+1(9.00e-05)]_31 chrX:13442619-13442699 6.40e-02 36_[+4(1.87e-05)]_36 chrV:53442-53522 3.19e-02 46_[+4(1.87e-05)]_26 chrIII:6961334-6961414 7.22e-01 80 chrIV:991421-991501 9.64e-01 80 chrX:6220069-6220149 2.08e-01 15_[+1(9.00e-05)]_57 chrX:12843668-12843748 2.61e-03 32_[+4(1.87e-05)]_40 chrX:8971546-8971626 8.64e-02 66_[+4(1.87e-05)]_6 chrI:4967583-4967663 9.27e-02 80 chrIII:4508507-4508587 1.00e+00 80 chrV:6229671-6229751 6.50e-01 80 chrIII:6280516-6280596 8.72e-01 80 chrV:12318255-12318335 4.28e-02 14_[+5(8.72e-05)]_58 chrI:9327594-9327674 7.83e-01 80 chrIII:7336359-7336439 2.65e-01 80 chrX:10145272-10145352 9.58e-01 80 chrV:12780419-12780499 6.98e-01 80 chrIV:7654486-7654566 6.41e-01 80 chrIV:14013824-14013904 2.61e-01 80 chrIV:15039616-15039696 7.98e-01 80 chrIV:6481148-6481228 9.73e-04 25_[+4(1.87e-05)]_33_[+1(1.20e-05)]_\ 6 chrII:10542113-10542193 4.17e-01 80 chrIV:2805648-2805728 9.92e-01 80 chrIII:7141357-7141437 3.56e-02 80 chrIII:1424514-1424594 4.02e-02 53_[+5(2.95e-05)]_19 chrX:5713683-5713763 6.66e-04 45_[+5(2.95e-05)]_27 chrII:5782120-5782200 8.04e-01 80 chrX:8646464-8646544 5.77e-02 28_[+4(1.87e-05)]_44 chrIII:5706416-5706496 1.21e-01 80 chrIV:5334713-5334793 6.37e-02 80 chrX:4789095-4789175 6.18e-05 43_[+2(1.49e-05)]_2_[+3(1.36e-05)]_\ 19 chrX:14115610-14115690 9.28e-02 43_[+5(8.72e-05)]_29 chrII:14617053-14617133 5.44e-03 33_[+2(7.79e-05)]_2_[+3(3.69e-05)]_\ 29 chrIV:16388421-16388501 8.60e-02 47_[+4(1.87e-05)]_25 chrV:15511743-15511823 8.91e-01 80 chrV:16592293-16592373 6.09e-01 80 chrIV:2639746-2639826 7.43e-01 80 chrIII:11066953-11067033 9.79e-01 80 chrIII:9780787-9780867 5.09e-01 80 chrIII:4269725-4269805 4.19e-01 80 chrIII:9717369-9717449 8.17e-02 80 chrIII:7642169-7642249 1.08e-02 3_[+1(1.20e-05)]_69 chrI:6220897-6220977 9.40e-01 80 chrI:8426790-8426870 8.25e-01 80 chrIV:11602298-11602378 3.18e-02 80 chrV:9318203-9318283 6.29e-04 5_[+2(1.49e-05)]_1_[+3(1.36e-05)]_\ 58 chrI:2410100-2410180 3.13e-02 30_[+2(7.79e-05)]_42 chrIV:12404294-12404374 1.19e-01 80 chrI:13653945-13654025 2.07e-01 80 chrX:16604623-16604703 7.52e-02 6_[+5(2.95e-05)]_66 chrIII:6887710-6887790 1.38e-01 32_[+1(1.20e-05)]_40 chrIV:4445918-4445998 6.27e-01 80 chrX:4444274-4444354 2.96e-03 [+4(1.87e-05)]_56_[+5(8.72e-05)]_8 chrIV:7845685-7845765 6.07e-01 80 chrI:7079641-7079721 4.53e-01 80 chrX:3697769-3697849 7.88e-04 3_[+3(6.24e-05)]_52_[+5(8.72e-05)]_\ 9 chrV:12491247-12491327 9.71e-01 80 chrX:16377993-16378073 7.57e-01 80 chrV:2673982-2674062 3.84e-04 34_[+2(5.47e-05)]_1_[+3(2.50e-05)]_\ 29 chrIII:2786011-2786091 1.01e-01 67_[+2(6.61e-05)]_5 chrIV:9477693-9477773 2.84e-01 80 chrX:1880837-1880917 3.28e-01 80 chrI:4254195-4254275 8.66e-01 80 chrI:2514286-2514366 1.73e-01 27_[+1(3.72e-05)]_45 chrX:12458123-12458203 1.37e-01 67_[+1(3.72e-05)]_5 chrIII:1122369-1122449 7.15e-03 71_[+2(2.80e-05)]_1 chrX:9091445-9091525 9.96e-01 80 chrIV:5364276-5364356 9.80e-01 80 chrIII:502707-502787 2.02e-02 34_[+4(3.57e-05)]_38 chrII:15025899-15025979 8.89e-01 80 chrX:5707989-5708069 6.14e-03 51_[+4(1.87e-05)]_21 chrI:9267123-9267203 1.71e-01 80 chrX:16590914-16590994 3.44e-01 80 chrIII:12250375-12250455 4.26e-01 80 chrIV:12086633-12086713 6.51e-04 10_[+2(2.80e-05)]_39_[+1(6.13e-05)]_\ 15 chrI:11505510-11505590 5.45e-04 47_[+2(1.49e-05)]_1_[+3(2.50e-05)]_\ 16 chrIII:7208035-7208115 7.76e-01 80 chrV:7237308-7237388 4.12e-03 58_[+5(2.95e-05)]_2_[+5(8.72e-05)]_\ 4 chrX:353288-353368 2.76e-01 80 chrV:19643169-19643249 4.05e-02 21_[+1(1.20e-05)]_51 chrIII:1604621-1604701 1.41e-01 80 chrX:2549482-2549562 2.54e-02 60_[+1(5.09e-05)]_12 chrV:8228963-8229043 5.21e-01 80 chrIII:2768800-2768880 8.79e-02 64_[+5(8.72e-05)]_8 chrI:9988962-9989042 9.45e-01 80 chrIV:11474177-11474257 7.02e-01 80 chrI:5165007-5165087 3.74e-01 80 chrI:6105757-6105837 1.23e-01 4_[+1(5.09e-05)]_68 chrIII:12874867-12874947 4.50e-01 80 chrX:14804890-14804970 4.28e-02 2_[+3(2.50e-05)]_70 chrI:1444144-1444224 7.08e-01 80 chrV:16370163-16370243 4.60e-02 38_[+1(6.13e-05)]_34 chrIII:10460723-10460803 9.66e-01 80 chrX:12172026-12172106 9.96e-02 80 chrIV:6756620-6756700 3.12e-01 80 chrIV:8375525-8375605 7.75e-01 80 chrII:5661219-5661299 8.50e-01 80 chrX:3371425-3371505 1.21e-01 11_[+1(5.09e-05)]_61 chrIII:6972017-6972097 9.64e-01 80 chrIII:4689734-4689814 2.74e-01 80 chrI:9619946-9620026 2.93e-02 70_[+3(1.36e-05)]_2 chrIV:2408571-2408651 1.26e-01 80 chrII:3519162-3519242 5.79e-01 80 chrI:12652234-12652314 9.95e-01 80 chrIV:7574067-7574147 1.90e-03 [+2(7.79e-05)]_37_[+1(9.00e-05)]_27 chrI:1446986-1447066 2.86e-01 80 chrIV:1094359-1094439 5.71e-01 80 chrI:6212823-6212903 2.15e-01 80 chrI:5986364-5986444 7.72e-03 80 chrIV:2389053-2389133 8.92e-01 80 chrII:5032730-5032810 1.45e-03 46_[+2(1.49e-05)]_3_[+3(5.25e-05)]_\ 15 chrV:15873900-15873980 1.68e-02 27_[+1(1.20e-05)]_45 chrX:6593535-6593615 4.02e-02 67_[+2(1.49e-05)]_5 chrIII:4237834-4237914 7.13e-01 80 chrIV:11179334-11179414 9.20e-01 80 chrX:13448839-13448919 5.71e-02 80 chrX:12890258-12890338 1.03e-01 41_[+1(3.72e-05)]_31 chrV:15191044-15191124 5.20e-02 57_[+1(3.72e-05)]_15 chrI:5706969-5707049 3.60e-02 26_[+4(3.57e-05)]_46 chrX:13306976-13307056 5.90e-02 70_[+4(1.87e-05)]_2 chrI:5429862-5429942 5.15e-01 80 chrIV:9191326-9191406 8.78e-01 80 chrIII:6158829-6158909 3.37e-02 11_[+1(9.00e-05)]_61 chrII:10840233-10840313 3.19e-02 27_[+4(1.87e-05)]_45 chrI:13297743-13297823 7.40e-01 80 chrI:9605806-9605886 3.14e-03 12_[+1(1.20e-05)]_60 chrIII:13643698-13643778 5.30e-01 80 chrIII:12608743-12608823 3.11e-01 80 chrII:11484782-11484862 6.07e-01 80 chrX:12563727-12563807 2.90e-02 67_[+2(1.49e-05)]_5 chrX:1345028-1345108 4.79e-02 25_[+2(6.61e-05)]_47 chrV:15465156-15465236 1.26e-01 7_[+5(8.72e-05)]_[+5(8.72e-05)]_57 chrIV:11025981-11026061 3.15e-01 80 chrII:5661826-5661906 5.59e-01 80 chrI:6082788-6082868 2.96e-01 80 chrX:14169819-14169899 8.93e-01 80 chrII:13199824-13199904 5.84e-02 80 chrX:10963821-10963901 6.62e-01 80 chrX:16209766-16209846 3.00e-01 17_[+1(5.09e-05)]_55 chrIV:5967146-5967226 3.11e-06 20_[+2(1.49e-05)]_2_[+3(1.36e-05)]_\ 29_[+1(2.29e-05)]_5 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c22n09.farnam.hpc.yale.internal ********************************************************************************