******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/worm/fasta/RankLinear2.0_40/lsy-2.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrII:8992933-8993013 1.0000 80 chrIV:2666739-2666819 1.0000 80 chrI:4511229-4511309 1.0000 80 chrII:7699177-7699257 1.0000 80 chrV:8024926-8025006 1.0000 80 chrIII:8310365-8310445 1.0000 80 chrX:4818412-4818492 1.0000 80 chrIII:7525100-7525180 1.0000 80 chrIII:8331952-8332032 1.0000 80 chrII:11495512-11495592 1.0000 80 chrII:14563953-14564033 1.0000 80 chrIII:1777616-1777696 1.0000 80 chrV:10055030-10055110 1.0000 80 chrV:20068558-20068638 1.0000 80 chrII:2232594-2232674 1.0000 80 chrIV:10003524-10003604 1.0000 80 chrI:8702421-8702501 1.0000 80 chrI:2726682-2726762 1.0000 80 chrI:9751104-9751184 1.0000 80 chrII:11748020-11748100 1.0000 80 chrIII:11471509-11471589 1.0000 80 chrIII:7770141-7770221 1.0000 80 chrIII:3312259-3312339 1.0000 80 chrIV:9706858-9706938 1.0000 80 chrI:6447028-6447108 1.0000 80 chrI:10333169-10333249 1.0000 80 chrII:15208330-15208410 1.0000 80 chrV:6611653-6611733 1.0000 80 chrIV:5354289-5354369 1.0000 80 chrII:8483545-8483625 1.0000 80 chrII:12023651-12023731 1.0000 80 chrII:10416628-10416708 1.0000 80 chrX:17297563-17297643 1.0000 80 chrIII:6383321-6383401 1.0000 80 chrV:10680400-10680480 1.0000 80 chrV:1893079-1893159 1.0000 80 chrIV:10843158-10843238 1.0000 80 chrIII:11847790-11847870 1.0000 80 chrIV:13231544-13231624 1.0000 80 chrIV:13370488-13370568 1.0000 80 chrII:7631830-7631910 1.0000 80 chrIII:9542976-9543056 1.0000 80 chrII:8997623-8997703 1.0000 80 chrII:7132089-7132169 1.0000 80 chrIII:7122979-7123059 1.0000 80 chrII:5421093-5421173 1.0000 80 chrIII:9862630-9862710 1.0000 80 chrIII:5878358-5878438 1.0000 80 chrIV:5089808-5089888 1.0000 80 chrI:2895172-2895252 1.0000 80 chrV:4063713-4063793 1.0000 80 chrII:4518431-4518511 1.0000 80 chrIII:1818183-1818263 1.0000 80 chrIV:7509030-7509110 1.0000 80 chrIV:14656730-14656810 1.0000 80 chrIV:7149352-7149432 1.0000 80 chrIII:8461564-8461644 1.0000 80 chrII:11281345-11281425 1.0000 80 chrI:719942-720022 1.0000 80 chrI:2047215-2047295 1.0000 80 chrII:456491-456571 1.0000 80 chrI:7553642-7553722 1.0000 80 chrX:17434382-17434462 1.0000 80 chrI:3908555-3908635 1.0000 80 chrI:47119-47199 1.0000 80 chrIII:1436863-1436943 1.0000 80 chrV:12763613-12763693 1.0000 80 chrIV:12361837-12361917 1.0000 80 chrII:8884420-8884500 1.0000 80 chrI:3876895-3876975 1.0000 80 chrV:17981886-17981966 1.0000 80 chrV:5584543-5584623 1.0000 80 chrII:11106129-11106209 1.0000 80 chrIII:6009174-6009254 1.0000 80 chrIV:13539042-13539122 1.0000 80 chrV:9765788-9765868 1.0000 80 chrII:2059132-2059212 1.0000 80 chrII:11782676-11782756 1.0000 80 chrV:3578953-3579033 1.0000 80 chrIII:7778656-7778736 1.0000 80 chrV:20749238-20749318 1.0000 80 chrII:8143415-8143495 1.0000 80 chrI:9333231-9333311 1.0000 80 chrIV:3399211-3399291 1.0000 80 chrI:7099734-7099814 1.0000 80 chrII:10579025-10579105 1.0000 80 chrIII:7790695-7790775 1.0000 80 chrV:14813715-14813795 1.0000 80 chrII:8701210-8701290 1.0000 80 chrI:6769200-6769280 1.0000 80 chrV:8220-8300 1.0000 80 chrI:8692589-8692669 1.0000 80 chrV:14612340-14612420 1.0000 80 chrIV:1328764-1328844 1.0000 80 chrIII:3510062-3510142 1.0000 80 chrI:10653707-10653787 1.0000 80 chrIII:6968436-6968516 1.0000 80 chrI:10252869-10252949 1.0000 80 chrV:19644071-19644151 1.0000 80 chrII:11275652-11275732 1.0000 80 chrV:6101436-6101516 1.0000 80 chrX:4222378-4222458 1.0000 80 chrX:17427952-17428032 1.0000 80 chrX:1871144-1871224 1.0000 80 chrV:7983773-7983853 1.0000 80 chrI:11930648-11930728 1.0000 80 chrIV:12093553-12093633 1.0000 80 chrIII:3248822-3248902 1.0000 80 chrII:4094451-4094531 1.0000 80 chrIII:4456716-4456796 1.0000 80 chrIV:4720695-4720775 1.0000 80 chrI:534286-534366 1.0000 80 chrII:12919313-12919393 1.0000 80 chrIII:1616365-1616445 1.0000 80 chrIV:3055469-3055549 1.0000 80 chrV:4063923-4064003 1.0000 80 chrIII:7281310-7281390 1.0000 80 chrIII:10642943-10643023 1.0000 80 chrIII:7897933-7898013 1.0000 80 chrII:11916319-11916399 1.0000 80 chrIII:12020230-12020310 1.0000 80 chrII:9061290-9061370 1.0000 80 chrV:5619475-5619555 1.0000 80 chrII:7864360-7864440 1.0000 80 chrI:10622866-10622946 1.0000 80 chrI:3930581-3930661 1.0000 80 chrI:14405727-14405807 1.0000 80 chrIII:8490414-8490494 1.0000 80 chrI:13840059-13840139 1.0000 80 chrII:7356967-7357047 1.0000 80 chrI:8787810-8787890 1.0000 80 chrI:2642459-2642539 1.0000 80 chrIII:2780958-2781038 1.0000 80 chrIV:7948521-7948601 1.0000 80 chrI:6739545-6739625 1.0000 80 chrIII:1520088-1520168 1.0000 80 chrI:8502429-8502509 1.0000 80 chrII:7111789-7111869 1.0000 80 chrIII:12971980-12972060 1.0000 80 chrI:4788584-4788664 1.0000 80 chrII:8891234-8891314 1.0000 80 chrI:4805444-4805524 1.0000 80 chrIII:9827747-9827827 1.0000 80 chrII:7874138-7874218 1.0000 80 chrIII:3857112-3857192 1.0000 80 chrIII:910985-911065 1.0000 80 chrI:2064019-2064099 1.0000 80 chrIV:9447304-9447384 1.0000 80 chrII:10867353-10867433 1.0000 80 chrII:7870812-7870892 1.0000 80 chrX:9846088-9846168 1.0000 80 chrIV:9932215-9932295 1.0000 80 chrII:6197015-6197095 1.0000 80 chrIV:17461509-17461589 1.0000 80 chrII:9892585-9892665 1.0000 80 chrV:12970727-12970807 1.0000 80 chrI:3910641-3910721 1.0000 80 chrIII:9228353-9228433 1.0000 80 chrI:524650-524730 1.0000 80 chrIII:6342220-6342300 1.0000 80 chrX:16521886-16521966 1.0000 80 chrV:15069607-15069687 1.0000 80 chrI:4767840-4767920 1.0000 80 chrIII:8085493-8085573 1.0000 80 chrI:9721062-9721142 1.0000 80 chrIV:5805639-5805719 1.0000 80 chrII:12350858-12350938 1.0000 80 chrI:2620465-2620545 1.0000 80 chrII:8162411-8162491 1.0000 80 chrIV:5940064-5940144 1.0000 80 chrIII:13341036-13341116 1.0000 80 chrIII:5442988-5443068 1.0000 80 chrII:13664570-13664650 1.0000 80 chrII:6519870-6519950 1.0000 80 chrV:4499198-4499278 1.0000 80 chrI:9616383-9616463 1.0000 80 chrI:6850025-6850105 1.0000 80 chrIV:5807083-5807163 1.0000 80 chrIII:7381934-7382014 1.0000 80 chrIII:9747322-9747402 1.0000 80 chrV:2138426-2138506 1.0000 80 chrV:18710130-18710210 1.0000 80 chrIII:6988206-6988286 1.0000 80 chrI:10633214-10633294 1.0000 80 chrIII:3070171-3070251 1.0000 80 chrIII:12152289-12152369 1.0000 80 chrV:9690896-9690976 1.0000 80 chrIII:6929722-6929802 1.0000 80 chrIII:889151-889231 1.0000 80 chrI:10330582-10330662 1.0000 80 chrI:8751584-8751664 1.0000 80 chrII:13596721-13596801 1.0000 80 chrI:9150316-9150396 1.0000 80 chrI:6756513-6756593 1.0000 80 chrV:6231989-6232069 1.0000 80 chrIII:9457475-9457555 1.0000 80 chrII:11644819-11644899 1.0000 80 chrI:6061296-6061376 1.0000 80 chrIII:11039376-11039456 1.0000 80 chrII:8158137-8158217 1.0000 80 chrI:9210912-9210992 1.0000 80 chrIV:7478270-7478350 1.0000 80 chrI:10185744-10185824 1.0000 80 chrI:6038171-6038251 1.0000 80 chrIII:6961331-6961411 1.0000 80 chrII:7537803-7537883 1.0000 80 chrIII:8899868-8899948 1.0000 80 chrI:2727624-2727704 1.0000 80 chrIII:2815161-2815241 1.0000 80 chrIII:3855004-3855084 1.0000 80 chrX:9584553-9584633 1.0000 80 chrIII:8432301-8432381 1.0000 80 chrI:5454249-5454329 1.0000 80 chrI:5127655-5127735 1.0000 80 chrII:461418-461498 1.0000 80 chrII:10350627-10350707 1.0000 80 chrII:10146619-10146699 1.0000 80 chrI:6109752-6109832 1.0000 80 chrV:12184463-12184543 1.0000 80 chrIV:4357453-4357533 1.0000 80 chrIV:11068454-11068534 1.0000 80 chrIII:5405761-5405841 1.0000 80 chrIV:3018752-3018832 1.0000 80 chrIV:1904393-1904473 1.0000 80 chrIII:491257-491337 1.0000 80 chrIII:4704088-4704168 1.0000 80 chrV:13391078-13391158 1.0000 80 chrIII:5710803-5710883 1.0000 80 chrI:12426826-12426906 1.0000 80 chrX:7585784-7585864 1.0000 80 chrII:11440319-11440399 1.0000 80 chrIII:1905764-1905844 1.0000 80 chrII:11642263-11642343 1.0000 80 chrII:10100059-10100139 1.0000 80 chrIII:10646249-10646329 1.0000 80 chrI:10683124-10683204 1.0000 80 chrIII:7293237-7293317 1.0000 80 chrIII:7534847-7534927 1.0000 80 chrIII:12377421-12377501 1.0000 80 chrII:8821350-8821430 1.0000 80 chrIV:5091304-5091384 1.0000 80 chrIV:12451372-12451452 1.0000 80 chrII:10607712-10607792 1.0000 80 chrII:8959334-8959414 1.0000 80 chrX:15779714-15779794 1.0000 80 chrIII:5140635-5140715 1.0000 80 chrI:11497958-11498038 1.0000 80 chrIII:12085069-12085149 1.0000 80 chrI:3866003-3866083 1.0000 80 chrI:10435843-10435923 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/worm/inference_raw/MEME/RankLinear2.0_40_lsy-2/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/worm/fasta/RankLinear2.0_40/lsy-2.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.276 C 0.222 G 0.222 T 0.279 Background letter frequencies (from file dataset with add-one prior applied): A 0.276 C 0.222 G 0.222 T 0.279 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF TACSGTAV MEME-1 width = 8 sites = 163 llr = 1169 E-value = 6.7e-112 ******************************************************************************** -------------------------------------------------------------------------------- Motif TACSGTAV MEME-1 Description -------------------------------------------------------------------------------- Simplified A :a:1::82 pos.-specific C 1:a4::13 probability G :::3a:14 matrix T 8::1:a:2 bits 2.2 * * 2.0 ** * 1.7 ** ** 1.5 ** ** Relative 1.3 ** ** Entropy 1.1 ** ** (10.3 bits) 0.9 *** *** 0.7 *** *** 0.4 *** *** 0.2 ******** 0.0 -------- Multilevel TACCGTAG consensus G C sequence A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TACSGTAV MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrI:5454249-5454329 50 1.44e-05 cggacttgac taccgtag tccacataaa chrII:7537803-7537883 48 1.44e-05 ATAGTTAATT TACCGTAG TTTGATTCGC chrI:10252869-10252949 31 1.44e-05 CAAATTCAAT TACCGTAG TCCTTGAAAG chrIV:12361837-12361917 48 1.44e-05 ATTGAATGCA TACCGTAG TTAGATACGC chrX:17434382-17434462 24 1.44e-05 AAACGAGTGT TACCGTAG TGTATGCACC chrIV:7509030-7509110 11 1.44e-05 AAATAACCGT TACCGTAG TCTCGTTTCG chrI:10333169-10333249 58 1.44e-05 CGTACTTGTG TACCGTAG CGCTCTAAAA chrIII:7770141-7770221 43 1.44e-05 CACGATTGCT TACCGTAG ACTGCGGACA chrIII:12085069-12085149 36 4.32e-05 CCCACTTGTC TACCGTAC CCCTCTGACG chrIII:7293237-7293317 60 4.32e-05 GCAGATTGGT TACGGTAG TGGGCAGAAA chrII:10146619-10146699 18 4.32e-05 TGGTTTCGAT TACCGTAC TCGAGACTAT chrI:5127655-5127735 42 4.32e-05 CGGAGTCGCA TACCGTAC TTCGCAATCC chrI:9210912-9210992 26 4.32e-05 CATGGAAGAT TACGGTAG CTAATGGACA chrI:6756513-6756593 52 4.32e-05 ACCGATTGTT TACCGTAC TACGAACAAT chrI:9150316-9150396 42 4.32e-05 CGTGATTGCG TACCGTAC CCCACGAAAA chrIV:5940064-5940144 21 4.32e-05 TTCTGCTGGC TACGGTAG ACAATGCAGT chrI:2620465-2620545 42 4.32e-05 AAGTACGCTC TACCGTAC GAAGCCATTT chrX:9846088-9846168 57 4.32e-05 GGAGGAGGCA TACGGTAG TTAATTGTTT chrIII:9827747-9827827 48 4.32e-05 CGTACATGTG TACCGTAC CCACAAACAA chrIII:2780958-2781038 53 4.32e-05 CACTTTTGTC TACCGTAC CCACTCGAAa chrI:10622866-10622946 26 4.32e-05 CCCCAAGGTA TACGGTAG ACAAGTACGC chrII:9061290-9061370 72 4.32e-05 ATAGAAGGAC TACGGTAG A chrII:11916319-11916399 71 4.32e-05 CACTCTGGAG TACGGTAG TT chrIII:1616365-1616445 48 4.32e-05 cttttgaagc taccgtac cccaaaatgt chrX:17427952-17428032 12 4.32e-05 GACAGTGGAT TACGGTAG TCCATTGATG chrV:14813715-14813795 28 4.32e-05 TGAAACGGAC TACGGTAG ACGAAACAGT chrIII:7790695-7790775 62 4.32e-05 CCGCATGGGG TACGGTAG TCGACGGCGG chrV:3578953-3579033 35 4.32e-05 CGTACTCGCC TACCGTAC CCTCGGTGTT chrII:11782676-11782756 7 4.32e-05 TCCAAT TACCGTAC CCAGTTAGCG chrV:17981886-17981966 49 4.32e-05 TGTCGTCGTC TACCGTAC CCCGGCGTTG chrIII:8461564-8461644 39 4.32e-05 TCAACGGGTA TACGGTAG GCGGGGCGAG chrIV:5089808-5089888 29 4.32e-05 GTTATTAAAC TACGGTAG ACGAAAACAC chrIII:9862630-9862710 46 4.32e-05 GCGCACTGCT TACCGTAC TCGGTTACTG chrIV:13231544-13231624 46 4.32e-05 CGGACTTGCA TACCGTAC CCTAGGTTGT chrIV:5354289-5354369 16 4.32e-05 AAAAAAGGTG TACGGTAG ATTGGTGCAA chrIII:3312259-3312339 29 4.32e-05 TCCTGCTTTC TACCGTAC CCCTCAACTG chrIII:11471509-11471589 48 4.32e-05 CGCGCAAAAC TACCGTAC CCCAAGAAAT chrII:11748020-11748100 54 4.32e-05 TTGCAGAAAC TACGGTAG GCCAGCACAT chrI:8702421-8702501 51 4.32e-05 CGGACTTCCT TACCGTAC ACTTCAATTT chrIII:7525100-7525180 73 4.32e-05 GGGCACGGAT TACGGTAG chrIII:8310365-8310445 26 4.32e-05 CCCAATTTTC TACCGTAC CACTCTTATT chrIV:2666739-2666819 29 4.32e-05 TCTGTTCGGT TACGGTAG GCAATGCCGC chrIII:6961331-6961411 24 5.76e-05 CCCGGTGTGG TACGGTAC ACAAATGGTG chrII:13596721-13596801 37 5.76e-05 GCGCGTGGGG TACGGTAC GCAGTCCGCA chrI:8751584-8751664 33 5.76e-05 TGAAAAGGGG TACGGTAC GCCGCAAACA chrIV:9706858-9706938 24 5.76e-05 TGAAGAAGGG TACGGTAC GCAACGGTGT chrIII:1777616-1777696 24 5.76e-05 TCGTTCCAAC TACGGTAC GCAAGTACGC chrIV:5805639-5805719 52 7.55e-05 TCCCCTCAAC TACCGTAA TCCACGTTTA chrII:8891234-8891314 40 7.55e-05 TACATTCGCA TACCGTAA CCACACATAA chrII:4518431-4518511 26 7.55e-05 TGCTCAAACC TACCGTAA CCCGAATTGG chrII:7631830-7631910 50 7.55e-05 TGATATCGGT TACCGTAA CCCATGTGTG chrII:15208330-15208410 53 7.55e-05 CGGACTTGCA TACCGTAA CCCACGCGCA chrIII:5710803-5710883 36 1.12e-04 GTAAAAAGAG TACGGTAA CCTGGAAGTC chrI:6061296-6061376 31 1.12e-04 ttttgtgggt tacggtaa acaacgcggt chrV:6231989-6232069 45 1.12e-04 AATTCTACTT TACCGTAT ACCTAAGCTC chrIII:5442988-5443068 49 1.12e-04 CGGACTTGCA TACCGTAT CCTTTCCATA chrII:9892585-9892665 33 1.12e-04 CGCGTCGGGG TACGGTAA CACTCGTTTC chrIV:12093553-12093633 24 1.12e-04 ACTACACGAC TACGGTAA GCAACGGTGA chrII:11275652-11275732 52 1.12e-04 GTTGCACACC TACCGTAT CACCAATTGT chrIII:6968436-6968516 12 1.12e-04 AGTGTATATT TACGGTAA ACATGAGGCG chrII:8701210-8701290 14 1.12e-04 GATTTTTAGC TACGGTAA AGCATCACAT chrV:5584543-5584623 38 1.12e-04 CGCAATTGCT TACCGTAT ACCTGGCGGC chrI:3908555-3908635 13 1.12e-04 TAAAAGCACC TACCGTAT ACACATTCGT chrX:4818412-4818492 22 1.12e-04 TTTTTTAGAC TACGGTAA ACAAATGTCG chrIII:7381934-7382014 22 1.30e-04 AACAATAAAC TACGGTAT TCGATTGTAC chrIII:10642943-10643023 38 1.30e-04 TCCCGGGTGG TACGGTAT GCAATGTGTG chrI:7099734-7099814 34 1.30e-04 CGTTACCAAC TACGGTAT GTGTGGATGT chrIV:7149352-7149432 30 1.30e-04 CCGGGAAAAG TACGGTAT GCAAGTCCGC chrIII:6383321-6383401 27 1.30e-04 TTTGATTGGC TACGGTAT GCGAGTCCGC chrII:8821350-8821430 45 1.48e-04 AAGAATGGAA TACTGTAG TCTTCTGGGA chrII:11642263-11642343 64 1.48e-04 TTCCGGTGAT TACTGTAG CATAGAAAA chrIV:3018752-3018832 3 1.48e-04 AG TACTGTAG TTTCTCAATT chrII:461418-461498 33 1.48e-04 cgttttgggg tactgtag tcagtgtttg chrII:11644819-11644899 40 1.48e-04 GTGATTTGCC TACTGTAG TTTGTACCCG chrII:6519870-6519950 69 1.48e-04 TGCTGCGCAC TACTGTAG GCCG chrIII:13341036-13341116 3 1.48e-04 AC TACTGTAG CATCGAGTTT chrIII:8085493-8085573 22 1.48e-04 TGTTATAGAG TACTGTAG ACAATTGTGT chrIII:7897933-7898013 58 1.48e-04 AAATGTCAGA TACTGTAG TCATCACATG chrII:4094451-4094531 58 1.48e-04 actgtaggtg tactgtag gggtacttta chrX:4222378-4222458 49 1.48e-04 CACCCAGGCC TACTGTAG CTCTCATGAA chrIV:13539042-13539122 55 1.48e-04 CACGGACAAC TACTGTAG CCCACATGAA chrII:456491-456571 26 1.48e-04 tgttttgggg tactgtag tcggtgtttg chrIII:5878358-5878438 16 1.48e-04 ATGGCAGGGT TACTGTAG AAAATTTCAC chrII:5421093-5421173 28 1.48e-04 ATTTCAAGGG TACTGTAG TTTTTTTTAA chrX:9584553-9584633 47 1.66e-04 ACTTAATGGA TACTGTAC AGAAGGTGTA chrV:4499198-4499278 3 1.66e-04 TC TACTGTAC CGAATTGAGT chrX:16521886-16521966 56 1.95e-04 cgtacttgca caccgtag tTTCTGTTTT chrII:7870812-7870892 31 1.95e-04 CTTTAAATTC CACCGTAG TACTCCGCAA chrV:7983773-7983853 45 1.95e-04 CGGACTTGTC CACCGTAG TCCGTTGAAA chrII:7132089-7132169 47 1.95e-04 CGGACTTGTT TACAGTAG CTCGCAAAAT chrI:10330582-10330662 62 2.59e-04 AAACGAGTGT CACCGTAC CCCCACTTTT chrV:9690896-9690976 42 2.59e-04 CATTTGCGTA CACCGTAC TCACCTATTT chrII:12350858-12350938 21 2.59e-04 cagtaccccc tacagtac ccctaatgcc chrIII:6342220-6342300 59 2.59e-04 TCCGAATGCA CACCGTAC ATGCGATATT chrIII:1436863-1436943 4 2.59e-04 GTG TACAGTAC GCCCCACACG chrV:4063713-4063793 21 2.59e-04 AGAATTAATT cacggtag cacagaaact chrV:1893079-1893159 51 2.59e-04 GTGCGTCGCA CACCGTAC ATCCTCAGTG chrII:8483545-8483625 18 2.59e-04 TTAATAATAA TACAGTAC CCCGCAAAGA chrIV:10003524-10003604 13 2.59e-04 TCAAATGCAT CACCGTAC CCTTTGCCAC chrV:20068558-20068638 24 2.59e-04 GACACACAGC TACAGTAC CCCATGCCTG chrII:7699177-7699257 50 2.59e-04 CGTACTTGTC CACCGTAC TCCTATTCGA chrI:4511229-4511309 46 2.59e-04 CGGACTTGTA CACCGTAC TCGGCAGAAA chrII:6197015-6197095 30 3.06e-04 TGAAAAGGGG TACGGTCG AAAGTCTGCA chrI:2064019-2064099 23 3.06e-04 TTGCTGCAAC TACGGTCG ACAACTGTGC chrV:19644071-19644151 37 3.06e-04 ATGAGAGGGG TACGGTCG ACAAGTACGC chrIV:3399211-3399291 23 3.06e-04 CCCCAAAGAC TACGGTCG ACGAGCTTCT chrIII:11847790-11847870 18 3.06e-04 TCTGACGAGG TACGGTCG ACAATTCGGG chrV:10680400-10680480 26 3.06e-04 AGGAGCCTAG TACGGTGG TTTTTTGTGT chrV:6611653-6611733 50 3.06e-04 TACATTTTCT TACCGTGC CCACTTTTTC chrV:18710130-18710210 20 3.39e-04 GTAATTGGGT TACTGTAA TAATTCAAAT chrV:15069607-15069687 6 3.39e-04 AAGAG TACTGTAA GCGAATGTCT chrII:7864360-7864440 15 3.63e-04 TTTATGCTGC TACGGTGC GTAATGTGTG chrII:8143415-8143495 16 3.63e-04 TCGAAATGAG TACGGTGC ACAAATGTCG chrI:3876895-3876975 15 3.63e-04 CACACCAGAC TACGGTCC ACAATTGCGT chrII:10416628-10416708 33 3.63e-04 TTATTCTGGA TACGGTGC GCGAAATTCT chrI:2895172-2895252 61 3.85e-04 ACAATTTTCT TACTGTAT TTTTTTTGAA chrI:8502429-8502509 43 4.22e-04 CTCGTCTAGC CACCGTAA TCGTATAACC chrIII:1520088-1520168 34 4.22e-04 cttttggcgc tacagtaa cccggaaaat chrIII:12020230-12020310 50 4.22e-04 CTCTCAAGTG TACAGTAA CCAAGTGGCC chrII:12919313-12919393 60 4.22e-04 GAAAGTCACC TACAGTAA CCCAGAATTT chrIII:7778656-7778736 9 4.22e-04 CCATCAAA TACAGTAA TCCTATCCCA chrII:11106129-11106209 27 4.22e-04 TGTGATGCGT TACAGTAA TATCTGTGCG chrII:11281345-11281425 10 4.22e-04 TCATAAATC TACAGTAA TCTCGGAGCT chrIV:4720695-4720775 31 4.51e-04 gtttttgtga taccgtgA AGCAAAATTT chrV:13391078-13391158 39 5.02e-04 CCCACATACC TACAGTAT TCTTTCTTGG chrI:9721062-9721142 50 5.02e-04 CCGAATTGAA CACCGTAT CCATCAACAC chrI:6109752-6109832 47 5.71e-04 CCGCAATGTT TACCGTGT GTGTTTACGG chrI:11930648-11930728 19 5.71e-04 ACACAAAATC GACCGTAG TGCGGCACGT chrV:14612340-14612420 63 5.71e-04 GACTTTTGCT TACCGTGT TTTATCGAAA chrV:12763613-12763693 24 5.71e-04 TTAAATTCAC TACGGTCA ACAATGAATA chrI:2047215-2047295 28 5.71e-04 gagagcgagG TACGGTCA CACTCGTTTC chrIV:10843158-10843238 54 5.71e-04 CTTTTTTGCG GACCGTAG CATACCACCA chrI:6447028-6447108 15 5.71e-04 AATTATGAAC TACGGTCA CCAAATTGGT chrI:9751104-9751184 12 5.71e-04 ACAAATTGGC TACGGTCA ACAATTCAGC chrV:8024926-8025006 59 5.71e-04 CGAAGACGGT GACCGTAG TTCATGCGTC chrI:10435843-10435923 42 6.00e-04 ATGCATCGCG AACCGTAG TTATCGCTGC chrV:8220-8300 29 6.00e-04 AAACGAGTGT AACCGTAG TTTTTGTCGT chrIV:5091304-5091384 26 6.66e-04 ACGGAAAGGG TACGGTGT GCAATTGTGT chrIII:2815161-2815241 57 6.66e-04 GATGCTTGTC GACCGTAC CCCGCGAAAT chrII:7111789-7111869 28 6.66e-04 TAGTTTTGGT TACGGTGT GCAAAGGTAC chrI:14405727-14405807 22 6.66e-04 TTCCCCCTAC TACGGTCT GCAATCGGGT chrIII:3248822-3248902 64 6.66e-04 GGGGATTGAT GACCGTAC TCCAAGGAG chrII:2059132-2059212 24 6.66e-04 TTATTCTGAC TACGGTCT GCAAAAGTCC chrII:8884420-8884500 27 6.66e-04 CATTACTGTG TACGGTGT ACTGTCAACC chrII:8997623-8997703 22 6.66e-04 TTCTGAGAGG TACGgtgt gaaaatgtgt chrI:2726682-2726762 26 6.66e-04 ATTGTGTGAG TACGGTGT GCAAGCGTCT chrII:8992933-8993013 35 6.66e-04 TTTTATGGGT TACGGTGT ACAAATCTGC chrIV:17461509-17461589 54 7.24e-04 CACATTTTCC AACCGTAC TTTCATGCCG chrIV:13370488-13370568 26 7.24e-04 GAGGCTGGCC TACTGTCG AGGCGCGCGT chrV:10055030-10055110 54 7.24e-04 ACACGTGGGA AACCGTAC CCGTTAATCA chrI:4805444-4805524 35 8.07e-04 CGTTTGCTCA CACAGTAG TCCGACGTGG chrI:2642459-2642539 35 8.55e-04 gcgactgaac caccgtgG GGCGCATTAA chrI:8692589-8692669 49 9.67e-04 AGTCCGCAAA CACCGTGC CGCTCAACTG chrI:47119-47199 4 9.67e-04 CAA AACCGTAA TCCCCTTCGC chrX:17297563-17297643 52 9.67e-04 TACAATTGTC AACCGTAA cacggcccgg chrV:6101436-6101516 52 1.01e-03 AATTGTGGTT GACCGTAT CACTCGTGAG chrIII:12152289-12152369 44 1.22e-03 GCTATTTTTA TACTGTCT GTTTTATCAA chrI:719942-720022 18 1.22e-03 GTTTTAATAG CACAGTAA TCCCCGAGCA chrIV:14656730-14656810 48 1.30e-03 TGTACGCAAA CACCGTGA CGACAAAATG chrIII:7122979-7123059 49 1.30e-03 TTAGTGCAAA CACCGTCA CGTCTCAATG chrII:12023651-12023731 52 1.30e-03 GGTGTGTGTA CACCGTCA CGTTACATTG chrIII:4704088-4704168 26 1.45e-03 CTGCGTTTTG TACAGTCT CTCGCCTGTA chrIV:3055469-3055549 18 1.75e-03 CGATTTTTAG AACTGTAA TTAGCCATGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TACSGTAV MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:5454249-5454329 1.4e-05 49_[+1]_23 chrII:7537803-7537883 1.4e-05 47_[+1]_25 chrI:10252869-10252949 1.4e-05 30_[+1]_42 chrIV:12361837-12361917 1.4e-05 47_[+1]_25 chrX:17434382-17434462 1.4e-05 23_[+1]_49 chrIV:7509030-7509110 1.4e-05 10_[+1]_62 chrI:10333169-10333249 1.4e-05 57_[+1]_15 chrIII:7770141-7770221 1.4e-05 42_[+1]_30 chrIII:12085069-12085149 4.3e-05 35_[+1]_37 chrIII:7293237-7293317 4.3e-05 59_[+1]_13 chrII:10146619-10146699 4.3e-05 17_[+1]_55 chrI:5127655-5127735 4.3e-05 41_[+1]_31 chrI:9210912-9210992 4.3e-05 25_[+1]_47 chrI:6756513-6756593 4.3e-05 51_[+1]_21 chrI:9150316-9150396 4.3e-05 41_[+1]_31 chrIV:5940064-5940144 4.3e-05 20_[+1]_52 chrI:2620465-2620545 4.3e-05 41_[+1]_31 chrX:9846088-9846168 4.3e-05 56_[+1]_16 chrIII:9827747-9827827 4.3e-05 47_[+1]_25 chrIII:2780958-2781038 4.3e-05 52_[+1]_20 chrI:10622866-10622946 4.3e-05 25_[+1]_47 chrII:9061290-9061370 4.3e-05 71_[+1]_1 chrII:11916319-11916399 4.3e-05 70_[+1]_2 chrIII:1616365-1616445 4.3e-05 47_[+1]_25 chrX:17427952-17428032 4.3e-05 11_[+1]_61 chrV:14813715-14813795 4.3e-05 27_[+1]_45 chrIII:7790695-7790775 4.3e-05 61_[+1]_11 chrV:3578953-3579033 4.3e-05 34_[+1]_38 chrII:11782676-11782756 4.3e-05 6_[+1]_66 chrV:17981886-17981966 4.3e-05 48_[+1]_24 chrIII:8461564-8461644 4.3e-05 38_[+1]_34 chrIV:5089808-5089888 4.3e-05 28_[+1]_44 chrIII:9862630-9862710 4.3e-05 45_[+1]_27 chrIV:13231544-13231624 4.3e-05 45_[+1]_27 chrIV:5354289-5354369 4.3e-05 15_[+1]_57 chrIII:3312259-3312339 4.3e-05 28_[+1]_44 chrIII:11471509-11471589 4.3e-05 47_[+1]_25 chrII:11748020-11748100 4.3e-05 53_[+1]_19 chrI:8702421-8702501 4.3e-05 50_[+1]_22 chrIII:7525100-7525180 4.3e-05 72_[+1] chrIII:8310365-8310445 4.3e-05 25_[+1]_47 chrIV:2666739-2666819 4.3e-05 28_[+1]_44 chrIII:6961331-6961411 5.8e-05 23_[+1]_49 chrII:13596721-13596801 5.8e-05 36_[+1]_36 chrI:8751584-8751664 5.8e-05 32_[+1]_40 chrIV:9706858-9706938 5.8e-05 23_[+1]_49 chrIII:1777616-1777696 5.8e-05 23_[+1]_49 chrIV:5805639-5805719 7.6e-05 51_[+1]_21 chrII:8891234-8891314 7.6e-05 39_[+1]_33 chrII:4518431-4518511 7.6e-05 25_[+1]_47 chrII:7631830-7631910 7.6e-05 49_[+1]_23 chrII:15208330-15208410 7.6e-05 52_[+1]_20 chrIII:5710803-5710883 0.00011 35_[+1]_37 chrI:6061296-6061376 0.00011 30_[+1]_42 chrV:6231989-6232069 0.00011 44_[+1]_28 chrIII:5442988-5443068 0.00011 48_[+1]_24 chrII:9892585-9892665 0.00011 32_[+1]_40 chrIV:12093553-12093633 0.00011 23_[+1]_49 chrII:11275652-11275732 0.00011 51_[+1]_21 chrIII:6968436-6968516 0.00011 11_[+1]_61 chrII:8701210-8701290 0.00011 13_[+1]_59 chrV:5584543-5584623 0.00011 37_[+1]_35 chrI:3908555-3908635 0.00011 12_[+1]_60 chrX:4818412-4818492 0.00011 21_[+1]_51 chrIII:7381934-7382014 0.00013 21_[+1]_51 chrIII:10642943-10643023 0.00013 37_[+1]_35 chrI:7099734-7099814 0.00013 33_[+1]_39 chrIV:7149352-7149432 0.00013 29_[+1]_43 chrIII:6383321-6383401 0.00013 26_[+1]_46 chrII:8821350-8821430 0.00015 44_[+1]_28 chrII:11642263-11642343 0.00015 63_[+1]_9 chrIV:3018752-3018832 0.00015 2_[+1]_70 chrII:461418-461498 0.00015 32_[+1]_40 chrII:11644819-11644899 0.00015 39_[+1]_33 chrII:6519870-6519950 0.00015 68_[+1]_4 chrIII:13341036-13341116 0.00015 2_[+1]_70 chrIII:8085493-8085573 0.00015 21_[+1]_51 chrIII:7897933-7898013 0.00015 57_[+1]_15 chrII:4094451-4094531 0.00015 57_[+1]_15 chrX:4222378-4222458 0.00015 48_[+1]_24 chrIV:13539042-13539122 0.00015 54_[+1]_18 chrII:456491-456571 0.00015 25_[+1]_47 chrIII:5878358-5878438 0.00015 15_[+1]_57 chrII:5421093-5421173 0.00015 27_[+1]_45 chrX:9584553-9584633 0.00017 46_[+1]_26 chrV:4499198-4499278 0.00017 2_[+1]_70 chrX:16521886-16521966 0.0002 55_[+1]_17 chrII:7870812-7870892 0.0002 30_[+1]_42 chrV:7983773-7983853 0.0002 44_[+1]_28 chrII:7132089-7132169 0.0002 46_[+1]_26 chrI:10330582-10330662 0.00026 61_[+1]_11 chrV:9690896-9690976 0.00026 41_[+1]_31 chrII:12350858-12350938 0.00026 20_[+1]_52 chrIII:6342220-6342300 0.00026 58_[+1]_14 chrIII:1436863-1436943 0.00026 3_[+1]_69 chrV:4063713-4063793 0.00026 20_[+1]_52 chrV:1893079-1893159 0.00026 50_[+1]_22 chrII:8483545-8483625 0.00026 17_[+1]_55 chrIV:10003524-10003604 0.00026 12_[+1]_60 chrV:20068558-20068638 0.00026 23_[+1]_49 chrII:7699177-7699257 0.00026 49_[+1]_23 chrI:4511229-4511309 0.00026 45_[+1]_27 chrII:6197015-6197095 0.00031 29_[+1]_43 chrI:2064019-2064099 0.00031 22_[+1]_50 chrV:19644071-19644151 0.00031 36_[+1]_36 chrIV:3399211-3399291 0.00031 22_[+1]_50 chrIII:11847790-11847870 0.00031 17_[+1]_55 chrV:10680400-10680480 0.00031 25_[+1]_47 chrV:6611653-6611733 0.00031 49_[+1]_23 chrV:18710130-18710210 0.00034 19_[+1]_53 chrV:15069607-15069687 0.00034 5_[+1]_67 chrII:7864360-7864440 0.00036 14_[+1]_58 chrII:8143415-8143495 0.00036 15_[+1]_57 chrI:3876895-3876975 0.00036 14_[+1]_58 chrII:10416628-10416708 0.00036 32_[+1]_40 chrI:2895172-2895252 0.00039 60_[+1]_12 chrI:8502429-8502509 0.00042 42_[+1]_30 chrIII:1520088-1520168 0.00042 33_[+1]_39 chrIII:12020230-12020310 0.00042 49_[+1]_23 chrII:12919313-12919393 0.00042 59_[+1]_13 chrIII:7778656-7778736 0.00042 8_[+1]_64 chrII:11106129-11106209 0.00042 26_[+1]_46 chrII:11281345-11281425 0.00042 9_[+1]_63 chrIV:4720695-4720775 0.00045 30_[+1]_42 chrV:13391078-13391158 0.0005 38_[+1]_34 chrI:9721062-9721142 0.0005 49_[+1]_23 chrI:6109752-6109832 0.00057 46_[+1]_26 chrI:11930648-11930728 0.00057 18_[+1]_54 chrV:14612340-14612420 0.00057 62_[+1]_10 chrV:12763613-12763693 0.00057 23_[+1]_49 chrI:2047215-2047295 0.00057 27_[+1]_45 chrIV:10843158-10843238 0.00057 53_[+1]_19 chrI:6447028-6447108 0.00057 14_[+1]_58 chrI:9751104-9751184 0.00057 11_[+1]_61 chrV:8024926-8025006 0.00057 58_[+1]_14 chrI:10435843-10435923 0.0006 41_[+1]_31 chrV:8220-8300 0.0006 28_[+1]_44 chrIV:5091304-5091384 0.00067 25_[+1]_47 chrIII:2815161-2815241 0.00067 56_[+1]_16 chrII:7111789-7111869 0.00067 27_[+1]_45 chrI:14405727-14405807 0.00067 21_[+1]_51 chrIII:3248822-3248902 0.00067 63_[+1]_9 chrII:2059132-2059212 0.00067 23_[+1]_49 chrII:8884420-8884500 0.00067 26_[+1]_46 chrII:8997623-8997703 0.00067 21_[+1]_51 chrI:2726682-2726762 0.00067 25_[+1]_47 chrII:8992933-8993013 0.00067 34_[+1]_38 chrIV:17461509-17461589 0.00072 53_[+1]_19 chrIV:13370488-13370568 0.00072 25_[+1]_47 chrV:10055030-10055110 0.00072 53_[+1]_19 chrI:4805444-4805524 0.00081 34_[+1]_38 chrI:2642459-2642539 0.00085 34_[+1]_38 chrI:8692589-8692669 0.00097 48_[+1]_24 chrI:47119-47199 0.00097 3_[+1]_69 chrX:17297563-17297643 0.00097 51_[+1]_21 chrV:6101436-6101516 0.001 51_[+1]_21 chrIII:12152289-12152369 0.0012 43_[+1]_29 chrI:719942-720022 0.0012 17_[+1]_55 chrIV:14656730-14656810 0.0013 47_[+1]_25 chrIII:7122979-7123059 0.0013 48_[+1]_24 chrII:12023651-12023731 0.0013 51_[+1]_21 chrIII:4704088-4704168 0.0014 25_[+1]_47 chrIV:3055469-3055549 0.0017 17_[+1]_55 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TACSGTAV MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TACSGTAV width=8 seqs=163 chrI:5454249-5454329 ( 50) TACCGTAG 1 chrII:7537803-7537883 ( 48) TACCGTAG 1 chrI:10252869-10252949 ( 31) TACCGTAG 1 chrIV:12361837-12361917 ( 48) TACCGTAG 1 chrX:17434382-17434462 ( 24) TACCGTAG 1 chrIV:7509030-7509110 ( 11) TACCGTAG 1 chrI:10333169-10333249 ( 58) TACCGTAG 1 chrIII:7770141-7770221 ( 43) TACCGTAG 1 chrIII:12085069-12085149 ( 36) TACCGTAC 1 chrIII:7293237-7293317 ( 60) TACGGTAG 1 chrII:10146619-10146699 ( 18) TACCGTAC 1 chrI:5127655-5127735 ( 42) TACCGTAC 1 chrI:9210912-9210992 ( 26) TACGGTAG 1 chrI:6756513-6756593 ( 52) TACCGTAC 1 chrI:9150316-9150396 ( 42) TACCGTAC 1 chrIV:5940064-5940144 ( 21) TACGGTAG 1 chrI:2620465-2620545 ( 42) TACCGTAC 1 chrX:9846088-9846168 ( 57) TACGGTAG 1 chrIII:9827747-9827827 ( 48) TACCGTAC 1 chrIII:2780958-2781038 ( 53) TACCGTAC 1 chrI:10622866-10622946 ( 26) TACGGTAG 1 chrII:9061290-9061370 ( 72) TACGGTAG 1 chrII:11916319-11916399 ( 71) TACGGTAG 1 chrIII:1616365-1616445 ( 48) TACCGTAC 1 chrX:17427952-17428032 ( 12) TACGGTAG 1 chrV:14813715-14813795 ( 28) TACGGTAG 1 chrIII:7790695-7790775 ( 62) TACGGTAG 1 chrV:3578953-3579033 ( 35) TACCGTAC 1 chrII:11782676-11782756 ( 7) TACCGTAC 1 chrV:17981886-17981966 ( 49) TACCGTAC 1 chrIII:8461564-8461644 ( 39) TACGGTAG 1 chrIV:5089808-5089888 ( 29) TACGGTAG 1 chrIII:9862630-9862710 ( 46) TACCGTAC 1 chrIV:13231544-13231624 ( 46) TACCGTAC 1 chrIV:5354289-5354369 ( 16) TACGGTAG 1 chrIII:3312259-3312339 ( 29) TACCGTAC 1 chrIII:11471509-11471589 ( 48) TACCGTAC 1 chrII:11748020-11748100 ( 54) TACGGTAG 1 chrI:8702421-8702501 ( 51) TACCGTAC 1 chrIII:7525100-7525180 ( 73) TACGGTAG 1 chrIII:8310365-8310445 ( 26) TACCGTAC 1 chrIV:2666739-2666819 ( 29) TACGGTAG 1 chrIII:6961331-6961411 ( 24) TACGGTAC 1 chrII:13596721-13596801 ( 37) TACGGTAC 1 chrI:8751584-8751664 ( 33) TACGGTAC 1 chrIV:9706858-9706938 ( 24) TACGGTAC 1 chrIII:1777616-1777696 ( 24) TACGGTAC 1 chrIV:5805639-5805719 ( 52) TACCGTAA 1 chrII:8891234-8891314 ( 40) TACCGTAA 1 chrII:4518431-4518511 ( 26) TACCGTAA 1 chrII:7631830-7631910 ( 50) TACCGTAA 1 chrII:15208330-15208410 ( 53) TACCGTAA 1 chrIII:5710803-5710883 ( 36) TACGGTAA 1 chrI:6061296-6061376 ( 31) TACGGTAA 1 chrV:6231989-6232069 ( 45) TACCGTAT 1 chrIII:5442988-5443068 ( 49) TACCGTAT 1 chrII:9892585-9892665 ( 33) TACGGTAA 1 chrIV:12093553-12093633 ( 24) TACGGTAA 1 chrII:11275652-11275732 ( 52) TACCGTAT 1 chrIII:6968436-6968516 ( 12) TACGGTAA 1 chrII:8701210-8701290 ( 14) TACGGTAA 1 chrV:5584543-5584623 ( 38) TACCGTAT 1 chrI:3908555-3908635 ( 13) TACCGTAT 1 chrX:4818412-4818492 ( 22) TACGGTAA 1 chrIII:7381934-7382014 ( 22) TACGGTAT 1 chrIII:10642943-10643023 ( 38) TACGGTAT 1 chrI:7099734-7099814 ( 34) TACGGTAT 1 chrIV:7149352-7149432 ( 30) TACGGTAT 1 chrIII:6383321-6383401 ( 27) TACGGTAT 1 chrII:8821350-8821430 ( 45) TACTGTAG 1 chrII:11642263-11642343 ( 64) TACTGTAG 1 chrIV:3018752-3018832 ( 3) TACTGTAG 1 chrII:461418-461498 ( 33) TACTGTAG 1 chrII:11644819-11644899 ( 40) TACTGTAG 1 chrII:6519870-6519950 ( 69) TACTGTAG 1 chrIII:13341036-13341116 ( 3) TACTGTAG 1 chrIII:8085493-8085573 ( 22) TACTGTAG 1 chrIII:7897933-7898013 ( 58) TACTGTAG 1 chrII:4094451-4094531 ( 58) TACTGTAG 1 chrX:4222378-4222458 ( 49) TACTGTAG 1 chrIV:13539042-13539122 ( 55) TACTGTAG 1 chrII:456491-456571 ( 26) TACTGTAG 1 chrIII:5878358-5878438 ( 16) TACTGTAG 1 chrII:5421093-5421173 ( 28) TACTGTAG 1 chrX:9584553-9584633 ( 47) TACTGTAC 1 chrV:4499198-4499278 ( 3) TACTGTAC 1 chrX:16521886-16521966 ( 56) CACCGTAG 1 chrII:7870812-7870892 ( 31) CACCGTAG 1 chrV:7983773-7983853 ( 45) CACCGTAG 1 chrII:7132089-7132169 ( 47) TACAGTAG 1 chrI:10330582-10330662 ( 62) CACCGTAC 1 chrV:9690896-9690976 ( 42) CACCGTAC 1 chrII:12350858-12350938 ( 21) TACAGTAC 1 chrIII:6342220-6342300 ( 59) CACCGTAC 1 chrIII:1436863-1436943 ( 4) TACAGTAC 1 chrV:4063713-4063793 ( 21) CACGGTAG 1 chrV:1893079-1893159 ( 51) CACCGTAC 1 chrII:8483545-8483625 ( 18) TACAGTAC 1 chrIV:10003524-10003604 ( 13) CACCGTAC 1 chrV:20068558-20068638 ( 24) TACAGTAC 1 chrII:7699177-7699257 ( 50) CACCGTAC 1 chrI:4511229-4511309 ( 46) CACCGTAC 1 chrII:6197015-6197095 ( 30) TACGGTCG 1 chrI:2064019-2064099 ( 23) TACGGTCG 1 chrV:19644071-19644151 ( 37) TACGGTCG 1 chrIV:3399211-3399291 ( 23) TACGGTCG 1 chrIII:11847790-11847870 ( 18) TACGGTCG 1 chrV:10680400-10680480 ( 26) TACGGTGG 1 chrV:6611653-6611733 ( 50) TACCGTGC 1 chrV:18710130-18710210 ( 20) TACTGTAA 1 chrV:15069607-15069687 ( 6) TACTGTAA 1 chrII:7864360-7864440 ( 15) TACGGTGC 1 chrII:8143415-8143495 ( 16) TACGGTGC 1 chrI:3876895-3876975 ( 15) TACGGTCC 1 chrII:10416628-10416708 ( 33) TACGGTGC 1 chrI:2895172-2895252 ( 61) TACTGTAT 1 chrI:8502429-8502509 ( 43) CACCGTAA 1 chrIII:1520088-1520168 ( 34) TACAGTAA 1 chrIII:12020230-12020310 ( 50) TACAGTAA 1 chrII:12919313-12919393 ( 60) TACAGTAA 1 chrIII:7778656-7778736 ( 9) TACAGTAA 1 chrII:11106129-11106209 ( 27) TACAGTAA 1 chrII:11281345-11281425 ( 10) TACAGTAA 1 chrIV:4720695-4720775 ( 31) TACCGTGA 1 chrV:13391078-13391158 ( 39) TACAGTAT 1 chrI:9721062-9721142 ( 50) CACCGTAT 1 chrI:6109752-6109832 ( 47) TACCGTGT 1 chrI:11930648-11930728 ( 19) GACCGTAG 1 chrV:14612340-14612420 ( 63) TACCGTGT 1 chrV:12763613-12763693 ( 24) TACGGTCA 1 chrI:2047215-2047295 ( 28) TACGGTCA 1 chrIV:10843158-10843238 ( 54) GACCGTAG 1 chrI:6447028-6447108 ( 15) TACGGTCA 1 chrI:9751104-9751184 ( 12) TACGGTCA 1 chrV:8024926-8025006 ( 59) GACCGTAG 1 chrI:10435843-10435923 ( 42) AACCGTAG 1 chrV:8220-8300 ( 29) AACCGTAG 1 chrIV:5091304-5091384 ( 26) TACGGTGT 1 chrIII:2815161-2815241 ( 57) GACCGTAC 1 chrII:7111789-7111869 ( 28) TACGGTGT 1 chrI:14405727-14405807 ( 22) TACGGTCT 1 chrIII:3248822-3248902 ( 64) GACCGTAC 1 chrII:2059132-2059212 ( 24) TACGGTCT 1 chrII:8884420-8884500 ( 27) TACGGTGT 1 chrII:8997623-8997703 ( 22) TACGGTGT 1 chrI:2726682-2726762 ( 26) TACGGTGT 1 chrII:8992933-8993013 ( 35) TACGGTGT 1 chrIV:17461509-17461589 ( 54) AACCGTAC 1 chrIV:13370488-13370568 ( 26) TACTGTCG 1 chrV:10055030-10055110 ( 54) AACCGTAC 1 chrI:4805444-4805524 ( 35) CACAGTAG 1 chrI:2642459-2642539 ( 35) CACCGTGG 1 chrI:8692589-8692669 ( 49) CACCGTGC 1 chrI:47119-47199 ( 4) AACCGTAA 1 chrX:17297563-17297643 ( 52) AACCGTAA 1 chrV:6101436-6101516 ( 52) GACCGTAT 1 chrIII:12152289-12152369 ( 44) TACTGTCT 1 chrI:719942-720022 ( 18) CACAGTAA 1 chrIV:14656730-14656810 ( 48) CACCGTGA 1 chrIII:7122979-7123059 ( 49) CACCGTCA 1 chrII:12023651-12023731 ( 52) CACCGTCA 1 chrIII:4704088-4704168 ( 26) TACAGTCT 1 chrIV:3055469-3055549 ( 18) AACTGTAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TACSGTAV MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 7.76009 E= 6.7e-112 -268 -86 -259 151 186 -1399 -1399 -1399 -1399 217 -1399 -1399 -159 93 63 -99 -1399 -1399 217 -1399 -1399 -1399 -1399 184 152 -109 -109 -1399 -45 34 68 -81 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TACSGTAV MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 163 E= 6.7e-112 0.042945 0.122699 0.036810 0.797546 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.092025 0.423313 0.343558 0.141104 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.791411 0.104294 0.104294 0.000000 0.202454 0.282209 0.355828 0.159509 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TACSGTAV MEME-1 regular expression -------------------------------------------------------------------------------- TAC[CG]GTA[GCA] -------------------------------------------------------------------------------- Time 6.72 secs. ******************************************************************************** ******************************************************************************** MOTIF TTGCGKAC MEME-2 width = 8 sites = 58 llr = 534 E-value = 4.2e-048 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTGCGKAC MEME-2 Description -------------------------------------------------------------------------------- Simplified A ::::2:9: pos.-specific C 1::a:2:a probability G ::a:831: matrix T 9a:::5:: bits 2.2 ** * 2.0 ** * 1.7 *** * 1.5 **** ** Relative 1.3 ***** ** Entropy 1.1 ***** ** (13.3 bits) 0.9 ***** ** 0.7 ***** ** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TTGCGTAC consensus G sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGCGKAC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrII:461418-461498 48 1.46e-05 tagtcagtgt ttgcgtac tcctggagct chrI:6061296-6061376 67 1.46e-05 acaatcaaaa ttgcgtac aatgcc chrV:15069607-15069687 48 1.46e-05 CGGCCGGTGT TTGCGTAC TCTAAAAATT chrX:16521886-16521966 43 1.46e-05 gccgcggtgt ttgcgtac ttgcacaccg chrIII:6342220-6342300 30 1.46e-05 TGTTCAGTGC TTGCGTAC AAAACGCTGT chrV:12970727-12970807 51 1.46e-05 CGCAGCGTGT TTGCGTAC TTAATTGATT chrIII:9827747-9827827 35 1.46e-05 GATTCGGTGT TTGCGTAC ATGTGTACCG chrII:8891234-8891314 25 1.46e-05 CGCAAAGTGT TTGCGTAC ATTCGCATAC chrI:6739545-6739625 38 1.46e-05 ATTTTCATAA TTGCGTAC ATTTGTTTTT chrI:13840059-13840139 34 1.46e-05 GATTTGGTGT TTGCGTAC AAAGCGCCAC chrIII:1616365-1616445 31 1.46e-05 ACTGcggtgt ttgcgtac ttttgaagct chrI:534286-534366 49 1.46e-05 GTCGTGGTGT TTGCGTAC CTCGGCGGGA chrIV:12093553-12093633 61 1.46e-05 TTTCAAATAA TTGCGTAC AAAGTTTCAA chrV:6101436-6101516 25 1.46e-05 TTTGCGTAAA TTGCGTAC TCTGGAGAAA chrV:3578953-3579033 22 1.46e-05 GCATCGGTGT TTGCGTAC TCGCCTACCG chrII:2059132-2059212 62 1.46e-05 CACGCGGTGG TTGCGTAC AAAGCGCCCG chrI:3876895-3876975 27 1.46e-05 CGGTCCACAA TTGCGTAC TCTTTCGGTC chrII:456491-456571 41 1.46e-05 tagtcggtgt ttgcgtac ttttggtgct chrIII:11847790-11847870 61 1.46e-05 GCAAAAGTGT TTGCGTAC ATTGTCAACC chrV:1893079-1893159 21 1.46e-05 CCGAGGATGA TTGCGTAC AAGTACGCAA chrI:10333169-10333249 45 1.46e-05 CCCTCGGTGT TTGCGTAC TTGTGTACCG chrI:6447028-6447108 60 1.46e-05 CGCGCCGTGT TTGCGTAC AACGAAATAA chrIV:9706858-9706938 71 1.46e-05 CGACGACAAC TTGCGTAC AG chrII:7699177-7699257 37 1.46e-05 TAATCGGTGT TTGCGTAC TTGTCCACCG chrI:5454249-5454329 37 2.61e-05 CGcgtggtgt ttgcggac ttgactaccg chrIII:6961331-6961411 43 2.61e-05 CAAATGGTGT TTGCGGAC TTGAAGGTGA chrI:8751584-8751664 68 2.61e-05 GCACGCACAA TTGCGGAC TTTCA chrIII:5442988-5443068 36 2.61e-05 TGCACGGTGT TTGCGGAC TTGCATACCG chrI:14405727-14405807 66 2.61e-05 TCACGCGCAA TTGCGGAC TCGCCCC chrIII:3248822-3248902 24 2.61e-05 GGTTTGACGT TTGCGGAC TCGAATGCGC chrV:7983773-7983853 32 2.61e-05 TGCGCGGTGT TTGCGGAC TTGTCCACCG chrV:19644071-19644151 63 2.61e-05 GCAAACACCG TTGCGGAC CAGGCATTTA chrV:14612340-14612420 48 2.61e-05 GGACTTGACA TTGCGGAC TTTTGCTTAC chrII:7132089-7132169 34 2.61e-05 TGTGCGGTGT TTGCGGAC TTGTTTACAG chrIV:13231544-13231624 33 2.61e-05 AGTTCGGTGT TTGCGGAC TTGCATACCG chrV:10680400-10680480 73 2.61e-05 TGAACAGTGT TTGCGGAC chrII:15208330-15208410 40 2.61e-05 CGTTCGGTGC TTGCGGAC TTGCATACCG chrI:8702421-8702501 38 2.61e-05 GGTGCAGTGT TTGCGGAC TTCCTTACCG chrI:4511229-4511309 33 2.61e-05 GTGATGGTGC TTGCGGAC TTGTACACCG chrIII:1520088-1520168 17 6.74e-05 accgcgggct ctgcgtac ttttggcgct chrV:6611653-6611733 35 6.74e-05 CGTCATGAGA CTGCGTAC ATTTTCTTAC chrV:8024926-8025006 31 6.74e-05 AACACCACAC CTGCGTAC AAATCGCGTT chrI:8692589-8692669 64 9.10e-05 TGCCGCTCAA CTGCGGAC AGCCTCGCT chrIII:7770141-7770221 52 9.10e-05 TTACCGTAGA CTGCGGAC ATCGCCTAAT chrIII:3855004-3855084 21 1.05e-04 AAATCGGTGT TTGCACAC AAAACACCGC chrIII:2815161-2815241 27 1.05e-04 CTACGACAAA TTGCACAC AAAACACCAC chrIV:17461509-17461589 39 1.05e-04 TCACGTCAGA TTGCACAC ATTTTCCAAC chrII:7111789-7111869 66 1.05e-04 CTACGCGCAG TTGCACAC AATCATT chrIII:2780958-2781038 38 1.05e-04 GTGGCGGTGT TTGCACAC TTTTGTCTAC chrI:10622866-10622946 61 1.05e-04 AACAACAATA TTGCACAC ATTACACAGA chrII:11275652-11275732 43 1.05e-04 TGACCAGTTG TTGCACAC CTACCGTATC chrII:5421093-5421173 60 1.05e-04 GTGCGCTCTA TTGCACAC CGCTGGAATA chrII:8997623-8997703 60 1.05e-04 gtcatggtgt ttgcacaC CATTTGTGTA chrIII:6383321-6383401 63 1.05e-04 GTCGCGGTGA TTGCACAC TTTTATCTTC chrII:6519870-6519950 61 1.15e-04 GGCGCGTTTG CTGCGCAC TACTGTAGGC chrI:11497958-11498038 31 1.26e-04 CTGGCGCATT TTGCGTGC TGGTGTATTT chrI:5127655-5127735 13 1.26e-04 ATGAGGTGCA TTGCGTGC TTTTGTGTTT chrII:11782676-11782756 42 1.45e-04 TCCACTGCGA TTGCGCGC AAAAATCGAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGCGKAC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:461418-461498 1.5e-05 47_[+2]_25 chrI:6061296-6061376 1.5e-05 66_[+2]_6 chrV:15069607-15069687 1.5e-05 47_[+2]_25 chrX:16521886-16521966 1.5e-05 42_[+2]_30 chrIII:6342220-6342300 1.5e-05 29_[+2]_43 chrV:12970727-12970807 1.5e-05 50_[+2]_22 chrIII:9827747-9827827 1.5e-05 34_[+2]_38 chrII:8891234-8891314 1.5e-05 24_[+2]_48 chrI:6739545-6739625 1.5e-05 37_[+2]_35 chrI:13840059-13840139 1.5e-05 33_[+2]_39 chrIII:1616365-1616445 1.5e-05 30_[+2]_42 chrI:534286-534366 1.5e-05 48_[+2]_24 chrIV:12093553-12093633 1.5e-05 60_[+2]_12 chrV:6101436-6101516 1.5e-05 24_[+2]_48 chrV:3578953-3579033 1.5e-05 21_[+2]_51 chrII:2059132-2059212 1.5e-05 61_[+2]_11 chrI:3876895-3876975 1.5e-05 26_[+2]_46 chrII:456491-456571 1.5e-05 40_[+2]_32 chrIII:11847790-11847870 1.5e-05 60_[+2]_12 chrV:1893079-1893159 1.5e-05 20_[+2]_52 chrI:10333169-10333249 1.5e-05 44_[+2]_28 chrI:6447028-6447108 1.5e-05 59_[+2]_13 chrIV:9706858-9706938 1.5e-05 70_[+2]_2 chrII:7699177-7699257 1.5e-05 36_[+2]_36 chrI:5454249-5454329 2.6e-05 36_[+2]_36 chrIII:6961331-6961411 2.6e-05 42_[+2]_30 chrI:8751584-8751664 2.6e-05 67_[+2]_5 chrIII:5442988-5443068 2.6e-05 35_[+2]_37 chrI:14405727-14405807 2.6e-05 65_[+2]_7 chrIII:3248822-3248902 2.6e-05 23_[+2]_49 chrV:7983773-7983853 2.6e-05 31_[+2]_41 chrV:19644071-19644151 2.6e-05 62_[+2]_10 chrV:14612340-14612420 2.6e-05 47_[+2]_25 chrII:7132089-7132169 2.6e-05 33_[+2]_39 chrIV:13231544-13231624 2.6e-05 32_[+2]_40 chrV:10680400-10680480 2.6e-05 72_[+2] chrII:15208330-15208410 2.6e-05 39_[+2]_33 chrI:8702421-8702501 2.6e-05 37_[+2]_35 chrI:4511229-4511309 2.6e-05 32_[+2]_40 chrIII:1520088-1520168 6.7e-05 16_[+2]_56 chrV:6611653-6611733 6.7e-05 34_[+2]_38 chrV:8024926-8025006 6.7e-05 30_[+2]_42 chrI:8692589-8692669 9.1e-05 63_[+2]_9 chrIII:7770141-7770221 9.1e-05 51_[+2]_21 chrIII:3855004-3855084 0.00011 20_[+2]_52 chrIII:2815161-2815241 0.00011 26_[+2]_46 chrIV:17461509-17461589 0.00011 38_[+2]_34 chrII:7111789-7111869 0.00011 65_[+2]_7 chrIII:2780958-2781038 0.00011 37_[+2]_35 chrI:10622866-10622946 0.00011 60_[+2]_12 chrII:11275652-11275732 0.00011 42_[+2]_30 chrII:5421093-5421173 0.00011 59_[+2]_13 chrII:8997623-8997703 0.00011 59_[+2]_13 chrIII:6383321-6383401 0.00011 62_[+2]_10 chrII:6519870-6519950 0.00011 60_[+2]_12 chrI:11497958-11498038 0.00013 30_[+2]_42 chrI:5127655-5127735 0.00013 12_[+2]_60 chrII:11782676-11782756 0.00015 41_[+2]_31 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGCGKAC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTGCGKAC width=8 seqs=58 chrII:461418-461498 ( 48) TTGCGTAC 1 chrI:6061296-6061376 ( 67) TTGCGTAC 1 chrV:15069607-15069687 ( 48) TTGCGTAC 1 chrX:16521886-16521966 ( 43) TTGCGTAC 1 chrIII:6342220-6342300 ( 30) TTGCGTAC 1 chrV:12970727-12970807 ( 51) TTGCGTAC 1 chrIII:9827747-9827827 ( 35) TTGCGTAC 1 chrII:8891234-8891314 ( 25) TTGCGTAC 1 chrI:6739545-6739625 ( 38) TTGCGTAC 1 chrI:13840059-13840139 ( 34) TTGCGTAC 1 chrIII:1616365-1616445 ( 31) TTGCGTAC 1 chrI:534286-534366 ( 49) TTGCGTAC 1 chrIV:12093553-12093633 ( 61) TTGCGTAC 1 chrV:6101436-6101516 ( 25) TTGCGTAC 1 chrV:3578953-3579033 ( 22) TTGCGTAC 1 chrII:2059132-2059212 ( 62) TTGCGTAC 1 chrI:3876895-3876975 ( 27) TTGCGTAC 1 chrII:456491-456571 ( 41) TTGCGTAC 1 chrIII:11847790-11847870 ( 61) TTGCGTAC 1 chrV:1893079-1893159 ( 21) TTGCGTAC 1 chrI:10333169-10333249 ( 45) TTGCGTAC 1 chrI:6447028-6447108 ( 60) TTGCGTAC 1 chrIV:9706858-9706938 ( 71) TTGCGTAC 1 chrII:7699177-7699257 ( 37) TTGCGTAC 1 chrI:5454249-5454329 ( 37) TTGCGGAC 1 chrIII:6961331-6961411 ( 43) TTGCGGAC 1 chrI:8751584-8751664 ( 68) TTGCGGAC 1 chrIII:5442988-5443068 ( 36) TTGCGGAC 1 chrI:14405727-14405807 ( 66) TTGCGGAC 1 chrIII:3248822-3248902 ( 24) TTGCGGAC 1 chrV:7983773-7983853 ( 32) TTGCGGAC 1 chrV:19644071-19644151 ( 63) TTGCGGAC 1 chrV:14612340-14612420 ( 48) TTGCGGAC 1 chrII:7132089-7132169 ( 34) TTGCGGAC 1 chrIV:13231544-13231624 ( 33) TTGCGGAC 1 chrV:10680400-10680480 ( 73) TTGCGGAC 1 chrII:15208330-15208410 ( 40) TTGCGGAC 1 chrI:8702421-8702501 ( 38) TTGCGGAC 1 chrI:4511229-4511309 ( 33) TTGCGGAC 1 chrIII:1520088-1520168 ( 17) CTGCGTAC 1 chrV:6611653-6611733 ( 35) CTGCGTAC 1 chrV:8024926-8025006 ( 31) CTGCGTAC 1 chrI:8692589-8692669 ( 64) CTGCGGAC 1 chrIII:7770141-7770221 ( 52) CTGCGGAC 1 chrIII:3855004-3855084 ( 21) TTGCACAC 1 chrIII:2815161-2815241 ( 27) TTGCACAC 1 chrIV:17461509-17461589 ( 39) TTGCACAC 1 chrII:7111789-7111869 ( 66) TTGCACAC 1 chrIII:2780958-2781038 ( 38) TTGCACAC 1 chrI:10622866-10622946 ( 61) TTGCACAC 1 chrII:11275652-11275732 ( 43) TTGCACAC 1 chrII:5421093-5421173 ( 60) TTGCACAC 1 chrII:8997623-8997703 ( 60) TTGCACAC 1 chrIII:6383321-6383401 ( 63) TTGCACAC 1 chrII:6519870-6519950 ( 61) CTGCGCAC 1 chrI:11497958-11498038 ( 31) TTGCGTGC 1 chrI:5127655-5127735 ( 13) TTGCGTGC 1 chrII:11782676-11782756 ( 42) TTGCGCGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGCGKAC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.54487 E= 4.2e-048 -1250 -110 -1250 168 -1250 -1250 -1250 184 -1250 -1250 217 -1250 -1250 217 -1250 -1250 -68 -1250 190 -1250 -1250 -10 40 84 178 -1250 -210 -1250 -1250 217 -1250 -1250 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGCGKAC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 58 E= 4.2e-048 0.000000 0.103448 0.000000 0.896552 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.172414 0.000000 0.827586 0.000000 0.000000 0.206897 0.293103 0.500000 0.948276 0.000000 0.051724 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGCGKAC MEME-2 regular expression -------------------------------------------------------------------------------- TTGCG[TGC]AC -------------------------------------------------------------------------------- Time 10.11 secs. ******************************************************************************** ******************************************************************************** MOTIF GCAAACAC MEME-3 width = 8 sites = 43 llr = 412 E-value = 5.2e-034 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCAAACAC MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::a8a:a: pos.-specific C :a:1:a:9 probability G a::::::: matrix T :::1:::1 bits 2.2 * 2.0 *** * 1.7 *** *** 1.5 *** **** Relative 1.3 *** **** Entropy 1.1 ******** (13.8 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GCAAACAC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAAACAC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIV:5091304-5091384 44 1.41e-05 GCAATTGTGT GCAAACAC CTCGACGGAA chrI:6756513-6756593 36 1.41e-05 TGCAGTGGTC GCAAACAC CGATTGTTTA chrII:13596721-13596801 52 1.41e-05 TACGCAGTCC GCAAACAC CGAATGCGAG chrI:10633214-10633294 28 1.41e-05 TGGGTCGGAT GCAAACAC GCTCCATGGT chrI:9721062-9721142 33 1.41e-05 TCTTTAGTGT GCAAACAC CGAATTGAAC chrIII:8085493-8085573 40 1.41e-05 ACAATTGTGT GCAAACAC TATGAGGGAT chrII:6197015-6197095 45 1.41e-05 TCGAAAGTCT GCAAACAC AGCGACGTCA chrI:2064019-2064099 39 1.41e-05 CGACAACTGT GCAAACAC CGCTGTGACA chrII:7111789-7111869 46 1.41e-05 GCAAAGGTAC GCAAACAC CACTACGCGC chrIII:1520088-1520168 1 1.41e-05 . gcaaacac cgcgggctct chrI:6739545-6739625 13 1.41e-05 AGTCAAGTCC GCAAACAC CAACCGCATT chrI:10622866-10622946 42 1.41e-05 AGACAAGTAC GCAAACAC CAACAACAAT chrIII:10642943-10643023 55 1.41e-05 TGCAATGTGT GCAAACAC CGTCGTGTAC chrV:19644071-19644151 53 1.41e-05 CGACAAGTAC GCAAACAC CGTTGCGGAC chrV:14813715-14813795 46 1.41e-05 ACGAAACAGT GCAAACAC CGCCACGTAA chrIII:7790695-7790775 11 1.41e-05 TAGAAAGACT GCAAACAC CAGAGAGACA chrIV:3399211-3399291 6 1.41e-05 TCCCT GCAAACAC CCCAAAGACT chrIV:13539042-13539122 24 1.41e-05 ATCATCGTGT GCAAACAC TGTGACGCAA chrV:6611653-6611733 17 1.41e-05 GTTCAAGTAC GCAAACAC CGTCATGAGA chrIII:7770141-7770221 28 1.41e-05 TACTCGGTGT GCAAACAC GATTGCTTAC chrI:9751104-9751184 44 1.41e-05 CGCCTAAGAC GCAAACAC CGTGTACACG chrV:10055030-10055110 7 1.41e-05 GAGTCT GCAAACAC TTCGCAGTAC chrIII:1777616-1777696 40 1.41e-05 ACGCAAGTAC GCAAACAC GGTCACGCGA chrIII:8331952-8332032 47 1.41e-05 ACAAATGTAC GCAAACAC CACTTACGGA chrV:8024926-8025006 18 1.41e-05 TCCACATTCC GCAAACAC CACACCTGCG chrIV:2666739-2666819 45 1.41e-05 AGGCAATGCC GCAAACAC CGAGTGAACT chrI:11497958-11498038 73 2.54e-05 TCCGCTTTCT GCACACAC chrV:9690896-9690976 11 2.54e-05 ACGCTTGTCT GCACACAC CAGACGCTAC chrI:10252869-10252949 12 2.54e-05 CCTTCCACAC GCACACAC ACAAATTCAA chrIII:3510062-3510142 58 3.97e-05 AGAAAAGTGT GCATACAC CGAATGCTGA chrV:5584543-5584623 9 3.97e-05 GCGAGTAC GCATACAC CACACTTTAC chrI:3876895-3876975 46 3.97e-05 CTTTCGGTCT GCATACAC CAGAACCGAC chrI:8751584-8751664 44 5.74e-05 ACGGTACGCC GCAAACAT CATACTGCAC chrIII:7381934-7382014 65 5.74e-05 TACTTTGTAC GCAAACAT GACACCTG chrIV:9932215-9932295 7 5.74e-05 TGAAAT GCAAACAT GCTCCAATGA chrI:3910641-3910721 53 9.26e-05 CACTCTCGTC TCAAACAC AACGCGGGAA chrIII:6968436-6968516 57 9.26e-05 TGTCGTAAAA GAAAACAC GCGGGAGACT chrIV:5089808-5089888 39 9.26e-05 TACGGTAGAC GAAAACAC TAAATTTTAC chrIII:9862630-9862710 18 9.26e-05 AAATTGCGTA TCAAACAC CCTACCTTAC chrV:12763613-12763693 54 1.04e-04 TGTGGTGTCC GCAGACAC GCTCACGACA chrI:12426826-12426906 63 1.27e-04 TGATGGTTTT GCAAACGC GCTCCGTTAA chrIV:17461509-17461589 19 1.27e-04 AAACGCGTAC GCAACCAC CGTCACGTCA chrII:8992933-8993013 51 1.41e-04 GTACAAATCT GCAAACAG CGCCACATAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAAACAC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:5091304-5091384 1.4e-05 43_[+3]_29 chrI:6756513-6756593 1.4e-05 35_[+3]_37 chrII:13596721-13596801 1.4e-05 51_[+3]_21 chrI:10633214-10633294 1.4e-05 27_[+3]_45 chrI:9721062-9721142 1.4e-05 32_[+3]_40 chrIII:8085493-8085573 1.4e-05 39_[+3]_33 chrII:6197015-6197095 1.4e-05 44_[+3]_28 chrI:2064019-2064099 1.4e-05 38_[+3]_34 chrII:7111789-7111869 1.4e-05 45_[+3]_27 chrIII:1520088-1520168 1.4e-05 [+3]_72 chrI:6739545-6739625 1.4e-05 12_[+3]_60 chrI:10622866-10622946 1.4e-05 41_[+3]_31 chrIII:10642943-10643023 1.4e-05 54_[+3]_18 chrV:19644071-19644151 1.4e-05 52_[+3]_20 chrV:14813715-14813795 1.4e-05 45_[+3]_27 chrIII:7790695-7790775 1.4e-05 10_[+3]_62 chrIV:3399211-3399291 1.4e-05 5_[+3]_67 chrIV:13539042-13539122 1.4e-05 23_[+3]_49 chrV:6611653-6611733 1.4e-05 16_[+3]_56 chrIII:7770141-7770221 1.4e-05 27_[+3]_45 chrI:9751104-9751184 1.4e-05 43_[+3]_29 chrV:10055030-10055110 1.4e-05 6_[+3]_66 chrIII:1777616-1777696 1.4e-05 39_[+3]_33 chrIII:8331952-8332032 1.4e-05 46_[+3]_26 chrV:8024926-8025006 1.4e-05 17_[+3]_55 chrIV:2666739-2666819 1.4e-05 44_[+3]_28 chrI:11497958-11498038 2.5e-05 72_[+3] chrV:9690896-9690976 2.5e-05 10_[+3]_62 chrI:10252869-10252949 2.5e-05 11_[+3]_61 chrIII:3510062-3510142 4e-05 57_[+3]_15 chrV:5584543-5584623 4e-05 8_[+3]_64 chrI:3876895-3876975 4e-05 45_[+3]_27 chrI:8751584-8751664 5.7e-05 43_[+3]_29 chrIII:7381934-7382014 5.7e-05 64_[+3]_8 chrIV:9932215-9932295 5.7e-05 6_[+3]_66 chrI:3910641-3910721 9.3e-05 52_[+3]_20 chrIII:6968436-6968516 9.3e-05 56_[+3]_16 chrIV:5089808-5089888 9.3e-05 38_[+3]_34 chrIII:9862630-9862710 9.3e-05 17_[+3]_55 chrV:12763613-12763693 0.0001 53_[+3]_19 chrI:12426826-12426906 0.00013 62_[+3]_10 chrIV:17461509-17461589 0.00013 18_[+3]_54 chrII:8992933-8993013 0.00014 50_[+3]_22 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAAACAC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCAAACAC width=8 seqs=43 chrIV:5091304-5091384 ( 44) GCAAACAC 1 chrI:6756513-6756593 ( 36) GCAAACAC 1 chrII:13596721-13596801 ( 52) GCAAACAC 1 chrI:10633214-10633294 ( 28) GCAAACAC 1 chrI:9721062-9721142 ( 33) GCAAACAC 1 chrIII:8085493-8085573 ( 40) GCAAACAC 1 chrII:6197015-6197095 ( 45) GCAAACAC 1 chrI:2064019-2064099 ( 39) GCAAACAC 1 chrII:7111789-7111869 ( 46) GCAAACAC 1 chrIII:1520088-1520168 ( 1) GCAAACAC 1 chrI:6739545-6739625 ( 13) GCAAACAC 1 chrI:10622866-10622946 ( 42) GCAAACAC 1 chrIII:10642943-10643023 ( 55) GCAAACAC 1 chrV:19644071-19644151 ( 53) GCAAACAC 1 chrV:14813715-14813795 ( 46) GCAAACAC 1 chrIII:7790695-7790775 ( 11) GCAAACAC 1 chrIV:3399211-3399291 ( 6) GCAAACAC 1 chrIV:13539042-13539122 ( 24) GCAAACAC 1 chrV:6611653-6611733 ( 17) GCAAACAC 1 chrIII:7770141-7770221 ( 28) GCAAACAC 1 chrI:9751104-9751184 ( 44) GCAAACAC 1 chrV:10055030-10055110 ( 7) GCAAACAC 1 chrIII:1777616-1777696 ( 40) GCAAACAC 1 chrIII:8331952-8332032 ( 47) GCAAACAC 1 chrV:8024926-8025006 ( 18) GCAAACAC 1 chrIV:2666739-2666819 ( 45) GCAAACAC 1 chrI:11497958-11498038 ( 73) GCACACAC 1 chrV:9690896-9690976 ( 11) GCACACAC 1 chrI:10252869-10252949 ( 12) GCACACAC 1 chrIII:3510062-3510142 ( 58) GCATACAC 1 chrV:5584543-5584623 ( 9) GCATACAC 1 chrI:3876895-3876975 ( 46) GCATACAC 1 chrI:8751584-8751664 ( 44) GCAAACAT 1 chrIII:7381934-7382014 ( 65) GCAAACAT 1 chrIV:9932215-9932295 ( 7) GCAAACAT 1 chrI:3910641-3910721 ( 53) TCAAACAC 1 chrIII:6968436-6968516 ( 57) GAAAACAC 1 chrIV:5089808-5089888 ( 39) GAAAACAC 1 chrIII:9862630-9862710 ( 18) TCAAACAC 1 chrV:12763613-12763693 ( 54) GCAGACAC 1 chrI:12426826-12426906 ( 63) GCAAACGC 1 chrIV:17461509-17461589 ( 19) GCAACCAC 1 chrII:8992933-8993013 ( 51) GCAAACAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAAACAC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.73438 E= 5.2e-034 -1207 -1207 210 -259 -257 210 -1207 -1207 186 -1207 -1207 -1207 160 -167 -325 -200 182 -325 -1207 -1207 -1207 217 -1207 -1207 182 -1207 -325 -1207 -1207 203 -325 -200 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAAACAC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 43 E= 5.2e-034 0.000000 0.000000 0.953488 0.046512 0.046512 0.953488 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.837209 0.069767 0.023256 0.069767 0.976744 0.023256 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.976744 0.000000 0.023256 0.000000 0.000000 0.906977 0.023256 0.069767 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAAACAC MEME-3 regular expression -------------------------------------------------------------------------------- GCAAACAC -------------------------------------------------------------------------------- Time 14.52 secs. ******************************************************************************** ******************************************************************************** MOTIF AKTGTCGT MEME-4 width = 8 sites = 30 llr = 272 E-value = 7.2e-008 ******************************************************************************** -------------------------------------------------------------------------------- Motif AKTGTCGT MEME-4 Description -------------------------------------------------------------------------------- Simplified A 91:::::: pos.-specific C :::::a:: probability G :4:9::a: matrix T 14a1a::a bits 2.2 ** 2.0 ** 1.7 * **** 1.5 ****** Relative 1.3 * ****** Entropy 1.1 * ****** (13.1 bits) 0.9 * ****** 0.7 * ****** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel ATTGTCGT consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AKTGTCGT MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIII:1905764-1905844 67 1.46e-05 GTTATTTCGG AGTGTCGT TGTGAC chrII:11440319-11440399 59 1.46e-05 GTTATTTCGG AGTGTCGT TTCTTTGCGC chrV:12184463-12184543 49 1.46e-05 GTTATATCGG AGTGTCGT AAGTGGCGGA chrII:461418-461498 6 1.46e-05 tcgca agtgtcgt aaaatcaggc chrI:6038171-6038251 53 1.46e-05 GGGATATCGG AGTGTCGT TGTTTATTTT chrIII:910985-911065 43 1.46e-05 GTTATAACGG AGTGTCGT TGACAAATAT chrII:7874138-7874218 57 1.46e-05 GTTCTGCTGG AGTGTCGT TGTTTGCTAA chrII:12919313-12919393 23 1.46e-05 GTTAAGGCGG AGTGTCGT TGTGCTCGGG chrIII:6968436-6968516 45 1.46e-05 GAAAGAACGG AGTGTCGT AAAAGAAAAC chrV:12970727-12970807 5 3.29e-05 TACA ATTGTCGT GATTTCTGGT chrIII:3857112-3857192 26 3.29e-05 atattgacga attgtcgt caaataaaat chrI:13840059-13840139 14 3.29e-05 GTTTTTTCAG ATTGTCGT CAGATTTGGT chrV:17981886-17981966 37 3.29e-05 GTCACGACGC ATTGTCGT CGTCTACCGT chrIII:7122979-7123059 7 3.29e-05 gaaGCA ATTGTCGT CAAATAGTGT chrI:6447028-6447108 35 3.29e-05 AAATTGGTTC ATTGTCGT GAAGAACCGC chrII:2232594-2232674 3 3.29e-05 TA ATTGTCGT GATAATGATT chrII:11495512-11495592 56 3.29e-05 TGTATGCAGA ATTGTCGT GAATTTCGAT chrIII:12971980-12972060 14 5.10e-05 AAGTCCGCAA AATGTCGT CAAATGTGGT chrII:8143415-8143495 27 5.10e-05 ACGGTGCACA AATGTCGT CAATTGTTAT chrIV:13370488-13370568 65 5.10e-05 CTCGTCGCGA AATGTCGT GTCCCTTT chrX:4818412-4818492 33 5.10e-05 ACGGTAAACA AATGTCGT AGAATTCTGC chrIII:1616365-1616445 9 8.42e-05 TTCTGCAT TTTGTCGT AAAAACTGcg chrV:8220-8300 39 8.42e-05 AACCGTAGTT TTTGTCGT TGCGAAGTAT chrI:2895172-2895252 12 8.42e-05 TTGTGTGCAT TTTGTCGT AGTCCGCAAT chrIV:10843158-10843238 17 8.42e-05 CGGTCCGCAA TTTGTCGT GATATTCGAT chrIV:12451372-12451452 43 1.02e-04 GGGAGACCGG AGTTTCGT AATGATGTTT chrII:7356967-7357047 60 1.02e-04 GTCATTTCGG AGTTTCGT TATTCAAGTT chrIII:8490414-8490494 34 1.02e-04 AAAAAATCGG AGTTTCGT AGTGCAAGTT chrI:8702421-8702501 71 1.25e-04 TTCAATTTTA ATTTTCGT TT chrIII:3312259-3312339 43 1.40e-04 GTACCCCTCA ACTGTCGT AAAATTCGGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AKTGTCGT MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:1905764-1905844 1.5e-05 66_[+4]_6 chrII:11440319-11440399 1.5e-05 58_[+4]_14 chrV:12184463-12184543 1.5e-05 48_[+4]_24 chrII:461418-461498 1.5e-05 5_[+4]_67 chrI:6038171-6038251 1.5e-05 52_[+4]_20 chrIII:910985-911065 1.5e-05 42_[+4]_30 chrII:7874138-7874218 1.5e-05 56_[+4]_16 chrII:12919313-12919393 1.5e-05 22_[+4]_50 chrIII:6968436-6968516 1.5e-05 44_[+4]_28 chrV:12970727-12970807 3.3e-05 4_[+4]_68 chrIII:3857112-3857192 3.3e-05 25_[+4]_47 chrI:13840059-13840139 3.3e-05 13_[+4]_59 chrV:17981886-17981966 3.3e-05 36_[+4]_36 chrIII:7122979-7123059 3.3e-05 6_[+4]_66 chrI:6447028-6447108 3.3e-05 34_[+4]_38 chrII:2232594-2232674 3.3e-05 2_[+4]_70 chrII:11495512-11495592 3.3e-05 55_[+4]_17 chrIII:12971980-12972060 5.1e-05 13_[+4]_59 chrII:8143415-8143495 5.1e-05 26_[+4]_46 chrIV:13370488-13370568 5.1e-05 64_[+4]_8 chrX:4818412-4818492 5.1e-05 32_[+4]_40 chrIII:1616365-1616445 8.4e-05 8_[+4]_64 chrV:8220-8300 8.4e-05 38_[+4]_34 chrI:2895172-2895252 8.4e-05 11_[+4]_61 chrIV:10843158-10843238 8.4e-05 16_[+4]_56 chrIV:12451372-12451452 0.0001 42_[+4]_30 chrII:7356967-7357047 0.0001 59_[+4]_13 chrIII:8490414-8490494 0.0001 33_[+4]_39 chrI:8702421-8702501 0.00013 70_[+4]_2 chrIII:3312259-3312339 0.00014 42_[+4]_30 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AKTGTCGT MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AKTGTCGT width=8 seqs=30 chrIII:1905764-1905844 ( 67) AGTGTCGT 1 chrII:11440319-11440399 ( 59) AGTGTCGT 1 chrV:12184463-12184543 ( 49) AGTGTCGT 1 chrII:461418-461498 ( 6) AGTGTCGT 1 chrI:6038171-6038251 ( 53) AGTGTCGT 1 chrIII:910985-911065 ( 43) AGTGTCGT 1 chrII:7874138-7874218 ( 57) AGTGTCGT 1 chrII:12919313-12919393 ( 23) AGTGTCGT 1 chrIII:6968436-6968516 ( 45) AGTGTCGT 1 chrV:12970727-12970807 ( 5) ATTGTCGT 1 chrIII:3857112-3857192 ( 26) ATTGTCGT 1 chrI:13840059-13840139 ( 14) ATTGTCGT 1 chrV:17981886-17981966 ( 37) ATTGTCGT 1 chrIII:7122979-7123059 ( 7) ATTGTCGT 1 chrI:6447028-6447108 ( 35) ATTGTCGT 1 chrII:2232594-2232674 ( 3) ATTGTCGT 1 chrII:11495512-11495592 ( 56) ATTGTCGT 1 chrIII:12971980-12972060 ( 14) AATGTCGT 1 chrII:8143415-8143495 ( 27) AATGTCGT 1 chrIV:13370488-13370568 ( 65) AATGTCGT 1 chrX:4818412-4818492 ( 33) AATGTCGT 1 chrIII:1616365-1616445 ( 9) TTTGTCGT 1 chrV:8220-8300 ( 39) TTTGTCGT 1 chrI:2895172-2895252 ( 12) TTTGTCGT 1 chrIV:10843158-10843238 ( 17) TTTGTCGT 1 chrIV:12451372-12451452 ( 43) AGTTTCGT 1 chrII:7356967-7357047 ( 60) AGTTTCGT 1 chrIII:8490414-8490494 ( 34) AGTTTCGT 1 chrI:8702421-8702501 ( 71) ATTTTCGT 1 chrIII:3312259-3312339 ( 43) ACTGTCGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AKTGTCGT MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.17126 E= 7.2e-008 165 -1155 -1155 -107 -105 -273 85 63 -1155 -1155 -1155 184 -1155 -1155 196 -107 -1155 -1155 -1155 184 -1155 217 -1155 -1155 -1155 -1155 217 -1155 -1155 -1155 -1155 184 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AKTGTCGT MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 30 E= 7.2e-008 0.866667 0.000000 0.000000 0.133333 0.133333 0.033333 0.400000 0.433333 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.866667 0.133333 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AKTGTCGT MEME-4 regular expression -------------------------------------------------------------------------------- A[TG]TGTCGT -------------------------------------------------------------------------------- Time 17.73 secs. ******************************************************************************** ******************************************************************************** MOTIF GTMCGCAA MEME-5 width = 8 sites = 27 llr = 250 E-value = 4.4e-007 ******************************************************************************** -------------------------------------------------------------------------------- Motif GTMCGCAA MEME-5 Description -------------------------------------------------------------------------------- Simplified A ::41:1a9 pos.-specific C ::69:9:: probability G 9:::a::1 matrix T 1a:::::: bits 2.2 * 2.0 * * 1.7 * **** 1.5 ** ***** Relative 1.3 ** ***** Entropy 1.1 ******** (13.3 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GTCCGCAA consensus A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTMCGCAA MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrI:6109752-6109832 35 1.15e-05 TTTTCAACGA GTCCGCAA TGTTTACCGT chrIII:12971980-12972060 6 1.15e-05 AAAAA GTCCGCAA AATGTCGTCA chrI:8692589-8692669 40 1.15e-05 GTTTGTAAAA GTCCGCAA ACACCGTGCC chrII:2059132-2059212 38 1.15e-05 GTCTGCAAAA GTCCGCAA TCTTCGCACG chrV:17981886-17981966 7 1.15e-05 ACCGAG GTCCGCAA GCATCATTCG chrIV:7149352-7149432 42 1.15e-05 CGGTATGCAA GTCCGCAA TCGTCGCAAA chrI:2895172-2895252 21 1.15e-05 TTTTGTCGTA GTCCGCAA TACCAAAACC chrIV:10843158-10843238 9 1.15e-05 GGCCTTCG GTCCGCAA TTTGTCGTGA chrIII:6383321-6383401 39 1.15e-05 CGGTATGCGA GTCCGCAA TAGTCCGTCG chrX:17297563-17297643 16 1.15e-05 TTTTTGCGCG GTCCGCAA TAGTTCGTCG chrI:5454249-5454329 8 2.57e-05 AACAAAT GTACGCAA TTATGAAAAT chrIII:3857112-3857192 57 2.57e-05 cgtacgcaaa gtacgcaa tagtgtacaa chrV:7983773-7983853 8 2.57e-05 TCCTAAA GTACGCAA GTTTAGTGCG chrIV:3399211-3399291 60 2.57e-05 CCGGCGTTTT GTACGCAA ACACCGCGAC chrIV:14656730-14656810 39 2.57e-05 TGTGTGTTTT GTACGCAA ACACCGTGAC chrIII:11847790-11847870 47 2.57e-05 AGGGCGCTTT GTACGCAA AAGTGTTTGC chrV:1893079-1893159 31 2.57e-05 TTGCGTACAA GTACGCAA TTGTGCGTCG chrII:6519870-6519950 42 4.92e-05 GAAATAATTA GTCCGAAA GGGCGCGTTT chrII:4518431-4518511 57 4.92e-05 GAGCCAAAGG GTCCGAAA CAGTGCACCA chrII:8158137-8158217 23 7.78e-05 CAAAACGTGC GTCAGCAA AGGTAAGTGC chrIV:9447304-9447384 32 7.78e-05 CACCTGGGTG GTCAGCAA GTCCCAAATC chrIII:10642943-10643023 69 1.07e-04 ACACCGTCGT GTACGCAG AGAG chrIV:7509030-7509110 29 1.07e-04 TCTCGTTTCG GTACGAAA CCTTCACACT chrV:10055030-10055110 21 1.07e-04 ACACTTCGCA GTACGCAG ACGTCGTATC chrIV:5940064-5940144 53 1.54e-04 ACCTCAGACT TTACGCAA AAATGCAGAC chrII:7870812-7870892 41 1.54e-04 CACCGTAGTA CTCCGCAA AGCCAGGCGC chrIII:7281310-7281390 47 1.54e-04 CACTCCGTTC TTACGCAA CGCATGCTGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTMCGCAA MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:6109752-6109832 1.1e-05 34_[+5]_38 chrIII:12971980-12972060 1.1e-05 5_[+5]_67 chrI:8692589-8692669 1.1e-05 39_[+5]_33 chrII:2059132-2059212 1.1e-05 37_[+5]_35 chrV:17981886-17981966 1.1e-05 6_[+5]_66 chrIV:7149352-7149432 1.1e-05 41_[+5]_31 chrI:2895172-2895252 1.1e-05 20_[+5]_52 chrIV:10843158-10843238 1.1e-05 8_[+5]_64 chrIII:6383321-6383401 1.1e-05 38_[+5]_34 chrX:17297563-17297643 1.1e-05 15_[+5]_57 chrI:5454249-5454329 2.6e-05 7_[+5]_65 chrIII:3857112-3857192 2.6e-05 56_[+5]_16 chrV:7983773-7983853 2.6e-05 7_[+5]_65 chrIV:3399211-3399291 2.6e-05 59_[+5]_13 chrIV:14656730-14656810 2.6e-05 38_[+5]_34 chrIII:11847790-11847870 2.6e-05 46_[+5]_26 chrV:1893079-1893159 2.6e-05 30_[+5]_42 chrII:6519870-6519950 4.9e-05 41_[+5]_31 chrII:4518431-4518511 4.9e-05 56_[+5]_16 chrII:8158137-8158217 7.8e-05 22_[+5]_50 chrIV:9447304-9447384 7.8e-05 31_[+5]_41 chrIII:10642943-10643023 0.00011 68_[+5]_4 chrIV:7509030-7509110 0.00011 28_[+5]_44 chrV:10055030-10055110 0.00011 20_[+5]_52 chrIV:5940064-5940144 0.00015 52_[+5]_20 chrII:7870812-7870892 0.00015 40_[+5]_32 chrIII:7281310-7281390 0.00015 46_[+5]_26 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTMCGCAA MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GTMCGCAA width=8 seqs=27 chrI:6109752-6109832 ( 35) GTCCGCAA 1 chrIII:12971980-12972060 ( 6) GTCCGCAA 1 chrI:8692589-8692669 ( 40) GTCCGCAA 1 chrII:2059132-2059212 ( 38) GTCCGCAA 1 chrV:17981886-17981966 ( 7) GTCCGCAA 1 chrIV:7149352-7149432 ( 42) GTCCGCAA 1 chrI:2895172-2895252 ( 21) GTCCGCAA 1 chrIV:10843158-10843238 ( 9) GTCCGCAA 1 chrIII:6383321-6383401 ( 39) GTCCGCAA 1 chrX:17297563-17297643 ( 16) GTCCGCAA 1 chrI:5454249-5454329 ( 8) GTACGCAA 1 chrIII:3857112-3857192 ( 57) GTACGCAA 1 chrV:7983773-7983853 ( 8) GTACGCAA 1 chrIV:3399211-3399291 ( 60) GTACGCAA 1 chrIV:14656730-14656810 ( 39) GTACGCAA 1 chrIII:11847790-11847870 ( 47) GTACGCAA 1 chrV:1893079-1893159 ( 31) GTACGCAA 1 chrII:6519870-6519950 ( 42) GTCCGAAA 1 chrII:4518431-4518511 ( 57) GTCCGAAA 1 chrII:8158137-8158217 ( 23) GTCAGCAA 1 chrIV:9447304-9447384 ( 32) GTCAGCAA 1 chrIII:10642943-10643023 ( 69) GTACGCAG 1 chrIV:7509030-7509110 ( 29) GTACGAAA 1 chrV:10055030-10055110 ( 21) GTACGCAG 1 chrIV:5940064-5940144 ( 53) TTACGCAA 1 chrII:7870812-7870892 ( 41) CTCCGCAA 1 chrIII:7281310-7281390 ( 47) TTACGCAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTMCGCAA MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.9683 E= 4.4e-007 -1140 -258 200 -191 -1140 -1140 -1140 184 69 132 -1140 -1140 -190 206 -1140 -1140 -1140 -1140 217 -1140 -131 200 -1140 -1140 186 -1140 -1140 -1140 175 -1140 -158 -1140 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTMCGCAA MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 27 E= 4.4e-007 0.000000 0.037037 0.888889 0.074074 0.000000 0.000000 0.000000 1.000000 0.444444 0.555556 0.000000 0.000000 0.074074 0.925926 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.111111 0.888889 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.925926 0.000000 0.074074 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTMCGCAA MEME-5 regular expression -------------------------------------------------------------------------------- GT[CA]CGCAA -------------------------------------------------------------------------------- Time 20.88 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:8992933-8993013 2.33e-03 80 chrIV:2666739-2666819 2.96e-04 28_[+1(4.32e-05)]_8_[+3(1.41e-05)]_\ 28 chrI:4511229-4511309 1.36e-03 32_[+2(2.61e-05)]_40 chrII:7699177-7699257 3.82e-03 36_[+2(1.46e-05)]_36 chrV:8024926-8025006 6.65e-06 17_[+3(1.41e-05)]_5_[+2(6.74e-05)]_\ 42 chrIII:8310365-8310445 4.81e-02 25_[+1(4.32e-05)]_47 chrX:4818412-4818492 7.45e-04 32_[+4(5.10e-05)]_40 chrIII:7525100-7525180 7.59e-03 72_[+1(4.32e-05)] chrIII:8331952-8332032 1.02e-04 46_[+3(1.41e-05)]_26 chrII:11495512-11495592 1.13e-02 55_[+4(3.29e-05)]_17 chrII:14563953-14564033 7.19e-01 80 chrIII:1777616-1777696 1.24e-07 27_[+5(2.57e-05)]_4_[+3(1.41e-05)]_\ 33 chrV:10055030-10055110 1.73e-04 6_[+3(1.41e-05)]_66 chrV:20068558-20068638 2.80e-01 80 chrII:2232594-2232674 2.04e-02 2_[+4(3.29e-05)]_70 chrIV:10003524-10003604 2.00e-02 80 chrI:8702421-8702501 1.69e-04 37_[+2(2.61e-05)]_5_[+1(4.32e-05)]_\ 22 chrI:2726682-2726762 1.14e-02 80 chrI:9751104-9751184 3.32e-04 43_[+3(1.41e-05)]_29 chrII:11748020-11748100 3.48e-03 53_[+1(4.32e-05)]_19 chrIII:11471509-11471589 1.77e-03 47_[+1(4.32e-05)]_25 chrIII:7770141-7770221 1.98e-05 27_[+3(1.41e-05)]_7_[+1(1.44e-05)]_\ 1_[+2(9.10e-05)]_21 chrIII:3312259-3312339 9.14e-04 28_[+1(4.32e-05)]_44 chrIV:9706858-9706938 8.66e-06 27_[+5(2.57e-05)]_6_[+2(2.61e-05)]_\ 21_[+2(1.46e-05)]_2 chrI:6447028-6447108 7.88e-05 34_[+4(3.29e-05)]_17_[+2(1.46e-05)]_\ 13 chrI:10333169-10333249 3.64e-04 44_[+2(1.46e-05)]_5_[+1(1.44e-05)]_\ 15 chrII:15208330-15208410 7.52e-04 39_[+2(2.61e-05)]_[+2(5.58e-05)]_25 chrV:6611653-6611733 5.82e-07 16_[+3(1.41e-05)]_10_[+2(6.74e-05)]_\ 38 chrIV:5354289-5354369 6.51e-02 15_[+1(4.32e-05)]_57 chrII:8483545-8483625 1.20e-01 80 chrII:12023651-12023731 3.37e-01 80 chrII:10416628-10416708 2.39e-01 80 chrX:17297563-17297643 1.61e-03 15_[+5(1.15e-05)]_57 chrIII:6383321-6383401 7.02e-05 38_[+5(1.15e-05)]_34 chrV:10680400-10680480 5.31e-03 72_[+2(2.61e-05)] chrV:1893079-1893159 4.59e-05 20_[+2(1.46e-05)]_2_[+5(2.57e-05)]_\ 42 chrIV:10843158-10843238 3.81e-06 8_[+5(1.15e-05)]_[+4(8.42e-05)]_24_\ [+2(2.61e-05)]_24 chrIII:11847790-11847870 3.44e-05 46_[+5(2.57e-05)]_6_[+2(1.46e-05)]_\ 12 chrIV:13231544-13231624 1.85e-03 32_[+2(2.61e-05)]_5_[+1(4.32e-05)]_\ 27 chrIV:13370488-13370568 2.78e-02 64_[+4(5.10e-05)]_8 chrII:7631830-7631910 1.40e-01 49_[+1(7.55e-05)]_23 chrIII:9542976-9543056 5.39e-01 80 chrII:8997623-8997703 4.81e-02 80 chrII:7132089-7132169 5.94e-03 33_[+2(2.61e-05)]_39 chrIII:7122979-7123059 2.74e-04 6_[+4(3.29e-05)]_29_[+3(1.41e-05)]_\ 29 chrII:5421093-5421173 1.03e-03 80 chrIII:9862630-9862710 1.76e-04 17_[+3(9.26e-05)]_20_[+1(4.32e-05)]_\ 27 chrIII:5878358-5878438 2.28e-01 80 chrIV:5089808-5089888 9.11e-04 28_[+1(4.32e-05)]_2_[+3(9.26e-05)]_\ 34 chrI:2895172-2895252 1.13e-04 11_[+4(8.42e-05)]_1_[+5(1.15e-05)]_\ 52 chrV:4063713-4063793 4.23e-02 80 chrII:4518431-4518511 7.14e-03 25_[+1(7.55e-05)]_23_[+5(4.92e-05)]_\ 16 chrIII:1818183-1818263 1.88e-01 80 chrIV:7509030-7509110 1.65e-04 10_[+1(1.44e-05)]_62 chrIV:14656730-14656810 3.79e-05 42_[+3(1.41e-05)]_30 chrIV:7149352-7149432 1.33e-03 41_[+5(1.15e-05)]_31 chrIII:8461564-8461644 1.06e-01 38_[+1(4.32e-05)]_34 chrII:11281345-11281425 2.45e-01 80 chrI:719942-720022 3.25e-01 80 chrI:2047215-2047295 2.92e-01 80 chrII:456491-456571 2.40e-03 40_[+2(1.46e-05)]_32 chrI:7553642-7553722 4.57e-01 80 chrX:17434382-17434462 3.34e-03 23_[+1(1.44e-05)]_49 chrI:3908555-3908635 8.48e-03 80 chrI:47119-47199 1.53e-01 80 chrIII:1436863-1436943 7.56e-02 80 chrV:12763613-12763693 1.42e-04 49_[+5(4.92e-05)]_23 chrIV:12361837-12361917 4.84e-04 47_[+1(1.44e-05)]_25 chrII:8884420-8884500 2.76e-02 80 chrI:3876895-3876975 1.01e-05 26_[+2(1.46e-05)]_11_[+3(3.97e-05)]_\ 27 chrV:17981886-17981966 4.48e-06 6_[+5(1.15e-05)]_22_[+4(3.29e-05)]_\ 4_[+1(4.32e-05)]_24 chrV:5584543-5584623 1.78e-04 8_[+3(3.97e-05)]_64 chrII:11106129-11106209 1.56e-02 80 chrIII:6009174-6009254 2.56e-01 80 chrIV:13539042-13539122 1.07e-03 23_[+3(1.41e-05)]_49 chrV:9765788-9765868 5.65e-01 80 chrII:2059132-2059212 3.07e-05 37_[+5(1.15e-05)]_16_[+2(1.46e-05)]_\ 11 chrII:11782676-11782756 1.06e-03 6_[+1(4.32e-05)]_66 chrV:3578953-3579033 8.81e-04 21_[+2(1.46e-05)]_5_[+1(4.32e-05)]_\ 38 chrIII:7778656-7778736 4.26e-02 80 chrV:20749238-20749318 6.14e-01 80 chrII:8143415-8143495 3.79e-03 26_[+4(5.10e-05)]_46 chrI:9333231-9333311 8.55e-01 80 chrIV:3399211-3399291 3.54e-05 5_[+3(1.41e-05)]_50_[+3(1.41e-05)]_\ 9 chrI:7099734-7099814 6.19e-02 80 chrII:10579025-10579105 7.08e-01 80 chrIII:7790695-7790775 7.55e-04 10_[+3(1.41e-05)]_43_[+1(4.32e-05)]_\ 11 chrV:14813715-14813795 6.29e-04 27_[+1(4.32e-05)]_10_[+3(1.41e-05)]_\ 27 chrII:8701210-8701290 1.62e-02 80 chrI:6769200-6769280 8.16e-01 80 chrV:8220-8300 2.78e-03 38_[+4(8.42e-05)]_34 chrI:8692589-8692669 4.14e-06 39_[+5(1.15e-05)]_16_[+2(9.10e-05)]_\ 9 chrV:14612340-14612420 8.21e-03 33_[+2(2.61e-05)]_6_[+2(2.61e-05)]_\ 25 chrIV:1328764-1328844 7.36e-01 80 chrIII:3510062-3510142 3.47e-02 57_[+3(3.97e-05)]_15 chrI:10653707-10653787 4.96e-01 80 chrIII:6968436-6968516 1.68e-04 44_[+4(1.46e-05)]_4_[+3(9.26e-05)]_\ 16 chrI:10252869-10252949 2.35e-04 11_[+3(2.54e-05)]_11_[+1(1.44e-05)]_\ 42 chrV:19644071-19644151 9.79e-07 52_[+3(1.41e-05)]_2_[+2(2.61e-05)]_\ 10 chrII:11275652-11275732 8.29e-03 80 chrV:6101436-6101516 4.21e-03 24_[+2(1.46e-05)]_48 chrX:4222378-4222458 4.42e-02 80 chrX:17427952-17428032 1.93e-01 11_[+1(4.32e-05)]_61 chrX:1871144-1871224 7.26e-01 80 chrV:7983773-7983853 9.36e-06 7_[+5(2.57e-05)]_16_[+2(2.61e-05)]_\ 41 chrI:11930648-11930728 3.84e-01 80 chrIV:12093553-12093633 3.92e-05 60_[+2(1.46e-05)]_12 chrIII:3248822-3248902 5.63e-03 23_[+2(2.61e-05)]_49 chrII:4094451-4094531 4.61e-01 80 chrIII:4456716-4456796 9.89e-01 80 chrIV:4720695-4720775 2.40e-01 80 chrI:534286-534366 8.90e-03 48_[+2(1.46e-05)]_24 chrII:12919313-12919393 5.49e-03 22_[+4(1.46e-05)]_50 chrIII:1616365-1616445 5.70e-05 8_[+4(8.42e-05)]_14_[+2(1.46e-05)]_\ 9_[+1(4.32e-05)]_25 chrIV:3055469-3055549 1.35e-01 80 chrV:4063923-4064003 3.95e-01 80 chrIII:7281310-7281390 3.81e-02 80 chrIII:10642943-10643023 3.64e-05 54_[+3(1.41e-05)]_18 chrIII:7897933-7898013 3.29e-02 80 chrII:11916319-11916399 9.58e-02 70_[+1(4.32e-05)]_2 chrIII:12020230-12020310 4.47e-02 80 chrII:9061290-9061370 9.83e-03 71_[+1(4.32e-05)]_1 chrV:5619475-5619555 1.97e-01 80 chrII:7864360-7864440 9.50e-02 80 chrI:10622866-10622946 2.08e-07 25_[+1(4.32e-05)]_8_[+3(1.41e-05)]_\ 31 chrI:3930581-3930661 2.40e-01 80 chrI:14405727-14405807 4.00e-03 65_[+2(2.61e-05)]_7 chrIII:8490414-8490494 8.08e-02 80 chrI:13840059-13840139 3.54e-04 13_[+4(3.29e-05)]_12_[+2(1.46e-05)]_\ 39 chrII:7356967-7357047 2.20e-02 80 chrI:8787810-8787890 7.75e-01 80 chrI:2642459-2642539 4.86e-01 80 chrIII:2780958-2781038 2.00e-03 52_[+1(4.32e-05)]_20 chrIV:7948521-7948601 1.87e-01 80 chrI:6739545-6739625 1.47e-06 8_[+5(1.15e-05)]_21_[+2(1.46e-05)]_\ 35 chrIII:1520088-1520168 3.40e-04 [+3(1.41e-05)]_8_[+2(6.74e-05)]_56 chrI:8502429-8502509 3.12e-01 80 chrII:7111789-7111869 5.47e-06 45_[+3(1.41e-05)]_27 chrIII:12971980-12972060 7.70e-04 5_[+5(1.15e-05)]_[+4(5.10e-05)]_59 chrI:4788584-4788664 8.92e-01 80 chrII:8891234-8891314 9.01e-05 24_[+2(1.46e-05)]_7_[+1(7.55e-05)]_\ 33 chrI:4805444-4805524 1.63e-02 80 chrIII:9827747-9827827 1.56e-04 34_[+2(1.46e-05)]_5_[+1(4.32e-05)]_\ 25 chrII:7874138-7874218 2.13e-02 56_[+4(1.46e-05)]_16 chrIII:3857112-3857192 5.60e-04 25_[+4(3.29e-05)]_14_[+5(2.57e-05)]_\ 1_[+5(2.57e-05)]_16 chrIII:910985-911065 3.43e-03 42_[+4(1.46e-05)]_30 chrI:2064019-2064099 7.13e-03 38_[+3(1.41e-05)]_18_[+3(9.26e-05)]_\ 8 chrIV:9447304-9447384 1.39e-01 31_[+5(7.78e-05)]_41 chrII:10867353-10867433 9.94e-01 80 chrII:7870812-7870892 4.52e-03 80 chrX:9846088-9846168 9.33e-03 56_[+1(4.32e-05)]_16 chrIV:9932215-9932295 1.08e-01 6_[+3(5.74e-05)]_66 chrII:6197015-6197095 1.62e-04 44_[+3(1.41e-05)]_28 chrIV:17461509-17461589 1.62e-05 14_[+5(2.57e-05)]_58 chrII:9892585-9892665 1.35e-01 80 chrV:12970727-12970807 7.00e-04 4_[+4(3.29e-05)]_38_[+2(1.46e-05)]_\ 22 chrI:3910641-3910721 8.17e-03 52_[+3(9.26e-05)]_20 chrIII:9228353-9228433 9.13e-01 80 chrI:524650-524730 7.19e-01 80 chrIII:6342220-6342300 9.11e-04 29_[+2(1.46e-05)]_43 chrX:16521886-16521966 2.28e-03 42_[+2(1.46e-05)]_30 chrV:15069607-15069687 1.96e-03 47_[+2(1.46e-05)]_25 chrI:4767840-4767920 3.10e-01 80 chrIII:8085493-8085573 1.65e-03 39_[+3(1.41e-05)]_33 chrI:9721062-9721142 2.00e-03 32_[+3(1.41e-05)]_40 chrIV:5805639-5805719 9.69e-02 51_[+1(7.55e-05)]_21 chrII:12350858-12350938 3.40e-01 80 chrI:2620465-2620545 1.50e-03 41_[+1(4.32e-05)]_31 chrII:8162411-8162491 1.13e-01 80 chrIV:5940064-5940144 1.00e-03 20_[+1(4.32e-05)]_52 chrIII:13341036-13341116 1.62e-02 80 chrIII:5442988-5443068 4.62e-03 35_[+2(2.61e-05)]_[+2(5.58e-05)]_29 chrII:13664570-13664650 8.38e-01 80 chrII:6519870-6519950 7.31e-04 41_[+5(4.92e-05)]_31 chrV:4499198-4499278 6.48e-02 80 chrI:9616383-9616463 4.98e-02 80 chrI:6850025-6850105 7.09e-01 80 chrIV:5807083-5807163 6.45e-01 80 chrIII:7381934-7382014 9.44e-05 60_[+5(2.57e-05)]_12 chrIII:9747322-9747402 8.80e-02 80 chrV:2138426-2138506 6.68e-01 80 chrV:18710130-18710210 6.29e-02 80 chrIII:6988206-6988286 5.32e-01 80 chrI:10633214-10633294 6.24e-02 27_[+3(1.41e-05)]_45 chrIII:3070171-3070251 8.50e-01 80 chrIII:12152289-12152369 7.42e-01 80 chrV:9690896-9690976 2.29e-05 10_[+3(2.54e-05)]_16_[+2(1.46e-05)]_\ 38 chrIII:6929722-6929802 8.25e-01 80 chrIII:889151-889231 3.12e-01 80 chrI:10330582-10330662 1.79e-01 80 chrI:8751584-8751664 4.69e-06 32_[+1(5.76e-05)]_3_[+3(5.74e-05)]_\ 16_[+2(2.61e-05)]_5 chrII:13596721-13596801 1.59e-06 36_[+1(5.76e-05)]_3_[+5(1.15e-05)]_\ 25 chrI:9150316-9150396 1.32e-04 36_[+2(1.46e-05)]_36 chrI:6756513-6756593 5.03e-04 35_[+3(1.41e-05)]_8_[+1(4.32e-05)]_\ 21 chrV:6231989-6232069 1.29e-01 80 chrIII:9457475-9457555 8.96e-01 80 chrII:11644819-11644899 1.96e-02 80 chrI:6061296-6061376 6.43e-04 50_[+2(1.46e-05)]_8_[+2(1.46e-05)]_\ 6 chrIII:11039376-11039456 5.80e-01 80 chrII:8158137-8158217 4.55e-02 22_[+5(7.78e-05)]_50 chrI:9210912-9210992 2.04e-02 25_[+1(4.32e-05)]_47 chrIV:7478270-7478350 1.94e-01 80 chrI:10185744-10185824 8.36e-01 80 chrI:6038171-6038251 1.44e-02 52_[+4(1.46e-05)]_20 chrIII:6961331-6961411 4.23e-04 23_[+1(5.76e-05)]_11_[+2(2.61e-05)]_\ 30 chrII:7537803-7537883 3.89e-02 47_[+1(1.44e-05)]_25 chrIII:8899868-8899948 6.86e-01 80 chrI:2727624-2727704 4.54e-01 80 chrIII:2815161-2815241 7.74e-03 80 chrIII:3855004-3855084 5.48e-02 80 chrX:9584553-9584633 3.27e-01 80 chrIII:8432301-8432381 8.44e-02 80 chrI:5454249-5454329 1.30e-05 7_[+5(2.57e-05)]_21_[+2(2.61e-05)]_\ 5_[+1(1.44e-05)]_23 chrI:5127655-5127735 1.04e-03 41_[+1(4.32e-05)]_31 chrII:461418-461498 4.10e-05 5_[+4(1.46e-05)]_34_[+2(1.46e-05)]_\ 25 chrII:10350627-10350707 5.29e-01 80 chrII:10146619-10146699 3.71e-02 17_[+1(4.32e-05)]_55 chrI:6109752-6109832 5.69e-04 34_[+5(1.15e-05)]_38 chrV:12184463-12184543 5.90e-02 48_[+4(1.46e-05)]_24 chrIV:4357453-4357533 7.28e-01 80 chrIV:11068454-11068534 8.38e-01 80 chrIII:5405761-5405841 8.44e-01 80 chrIV:3018752-3018832 9.82e-02 80 chrIV:1904393-1904473 9.85e-01 80 chrIII:491257-491337 3.32e-01 80 chrIII:4704088-4704168 2.50e-01 80 chrV:13391078-13391158 1.90e-01 80 chrIII:5710803-5710883 2.23e-02 80 chrI:12426826-12426906 5.05e-02 80 chrX:7585784-7585864 6.69e-02 80 chrII:11440319-11440399 1.21e-02 58_[+4(1.46e-05)]_14 chrIII:1905764-1905844 3.42e-03 66_[+4(1.46e-05)]_6 chrII:11642263-11642343 1.12e-01 80 chrII:10100059-10100139 1.71e-01 80 chrIII:10646249-10646329 8.71e-01 80 chrI:10683124-10683204 2.30e-01 80 chrIII:7293237-7293317 2.73e-03 59_[+1(4.32e-05)]_13 chrIII:7534847-7534927 8.82e-01 80 chrIII:12377421-12377501 8.10e-01 80 chrII:8821350-8821430 5.94e-02 80 chrIV:5091304-5091384 5.42e-03 43_[+3(1.41e-05)]_29 chrIV:12451372-12451452 1.43e-01 80 chrII:10607712-10607792 8.39e-01 80 chrII:8959334-8959414 8.57e-01 80 chrX:15779714-15779794 6.98e-01 80 chrIII:5140635-5140715 6.13e-01 80 chrI:11497958-11498038 4.54e-03 72_[+3(2.54e-05)] chrIII:12085069-12085149 6.28e-02 35_[+1(4.32e-05)]_37 chrI:3866003-3866083 9.18e-01 80 chrI:10435843-10435923 3.08e-01 80 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n06.farnam.hpc.yale.internal ********************************************************************************