******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/worm/fasta/RankLinear2.0_40/lsl-1.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrI:4895798-4895878 1.0000 80 chrIII:13173845-13173925 1.0000 80 chrII:14311111-14311191 1.0000 80 chrI:3870454-3870534 1.0000 80 chrV:17985990-17986070 1.0000 80 chrII:3350044-3350124 1.0000 80 chrII:4523403-4523483 1.0000 80 chrII:9974777-9974857 1.0000 80 chrIII:7893373-7893453 1.0000 80 chrII:1922848-1922928 1.0000 80 chrI:4185999-4186079 1.0000 80 chrV:18134569-18134649 1.0000 80 chrII:2032122-2032202 1.0000 80 chrI:3684148-3684228 1.0000 80 chrV:16405517-16405597 1.0000 80 chrV:10436815-10436895 1.0000 80 chrI:7504113-7504193 1.0000 80 chrV:6782395-6782475 1.0000 80 chrI:2307213-2307293 1.0000 80 chrI:9985689-9985769 1.0000 80 chrII:5188114-5188194 1.0000 80 chrV:17658312-17658392 1.0000 80 chrIII:13505669-13505749 1.0000 80 chrII:13122658-13122738 1.0000 80 chrIII:8793479-8793559 1.0000 80 chrV:15867434-15867514 1.0000 80 chrV:10969055-10969135 1.0000 80 chrV:18081916-18081996 1.0000 80 chrV:16921699-16921779 1.0000 80 chrV:11083128-11083208 1.0000 80 chrI:7588562-7588642 1.0000 80 chrV:15060738-15060818 1.0000 80 chrIII:3127317-3127397 1.0000 80 chrV:4552535-4552615 1.0000 80 chrV:18125480-18125560 1.0000 80 chrI:13368280-13368360 1.0000 80 chrIII:7853689-7853769 1.0000 80 chrIV:14786518-14786598 1.0000 80 chrIII:11974275-11974355 1.0000 80 chrV:8521202-8521282 1.0000 80 chrIV:11124822-11124902 1.0000 80 chrIV:5210777-5210857 1.0000 80 chrIII:4551626-4551706 1.0000 80 chrI:6063100-6063180 1.0000 80 chrI:4703852-4703932 1.0000 80 chrI:14711549-14711629 1.0000 80 chrII:11958969-11959049 1.0000 80 chrIII:8128947-8129027 1.0000 80 chrIV:1708078-1708158 1.0000 80 chrIII:10351046-10351126 1.0000 80 chrV:14597484-14597564 1.0000 80 chrIII:4987810-4987890 1.0000 80 chrIII:12444530-12444610 1.0000 80 chrV:17656740-17656820 1.0000 80 chrIII:11508984-11509064 1.0000 80 chrV:14698164-14698244 1.0000 80 chrII:1926110-1926190 1.0000 80 chrI:6758746-6758826 1.0000 80 chrIV:2893597-2893677 1.0000 80 chrIII:9106245-9106325 1.0000 80 chrV:18131232-18131312 1.0000 80 chrII:3345078-3345158 1.0000 80 chrII:3452513-3452593 1.0000 80 chrV:4195437-4195517 1.0000 80 chrII:3448939-3449019 1.0000 80 chrV:18137849-18137929 1.0000 80 chrIV:12804866-12804946 1.0000 80 chrII:7690549-7690629 1.0000 80 chrIV:12454435-12454515 1.0000 80 chrI:8412612-8412692 1.0000 80 chrII:3445496-3445576 1.0000 80 chrV:7803720-7803800 1.0000 80 chrIII:6283160-6283240 1.0000 80 chrI:10398234-10398314 1.0000 80 chrII:6923959-6924039 1.0000 80 chrV:687340-687420 1.0000 80 chrIV:11498338-11498418 1.0000 80 chrII:8593988-8594068 1.0000 80 chrIV:13356893-13356973 1.0000 80 chrV:14090751-14090831 1.0000 80 chrIII:9473532-9473612 1.0000 80 chrI:7218195-7218275 1.0000 80 chrIII:12353332-12353412 1.0000 80 chrIII:8831511-8831591 1.0000 80 chrIII:9488189-9488269 1.0000 80 chrV:17658993-17659073 1.0000 80 chrV:6510781-6510861 1.0000 80 chrI:12901961-12902041 1.0000 80 chrIII:4856262-4856342 1.0000 80 chrIII:1423656-1423736 1.0000 80 chrI:5511849-5511929 1.0000 80 chrI:10235796-10235876 1.0000 80 chrI:4824585-4824665 1.0000 80 chrV:11845661-11845741 1.0000 80 chrIV:10285491-10285571 1.0000 80 chrII:14813279-14813359 1.0000 80 chrIII:5543867-5543947 1.0000 80 chrIV:4046741-4046821 1.0000 80 chrIII:8492111-8492191 1.0000 80 chrII:2059430-2059510 1.0000 80 chrII:13758101-13758181 1.0000 80 chrV:102324-102404 1.0000 80 chrI:8918864-8918944 1.0000 80 chrII:14968427-14968507 1.0000 80 chrIV:8205801-8205881 1.0000 80 chrII:9842287-9842367 1.0000 80 chrI:2980500-2980580 1.0000 80 chrI:12907868-12907948 1.0000 80 chrV:4736060-4736140 1.0000 80 chrI:9658051-9658131 1.0000 80 chrI:6089457-6089537 1.0000 80 chrII:3342151-3342231 1.0000 80 chrI:6340799-6340879 1.0000 80 chrIII:8080482-8080562 1.0000 80 chrI:398507-398587 1.0000 80 chrI:4142972-4143052 1.0000 80 chrI:1445871-1445951 1.0000 80 chrII:3451169-3451249 1.0000 80 chrIV:2223266-2223346 1.0000 80 chrIV:13513200-13513280 1.0000 80 chrV:9703716-9703796 1.0000 80 chrV:1701745-1701825 1.0000 80 chrIII:5215693-5215773 1.0000 80 chrV:16789207-16789287 1.0000 80 chrV:6450274-6450354 1.0000 80 chrIII:2782017-2782097 1.0000 80 chrI:10808364-10808444 1.0000 80 chrIV:10546761-10546841 1.0000 80 chrIII:10083385-10083465 1.0000 80 chrI:8425813-8425893 1.0000 80 chrV:7064471-7064551 1.0000 80 chrIV:10357350-10357430 1.0000 80 chrIII:2101448-2101528 1.0000 80 chrV:19126761-19126841 1.0000 80 chrI:5563747-5563827 1.0000 80 chrII:3449931-3450011 1.0000 80 chrV:13560201-13560281 1.0000 80 chrV:15066039-15066119 1.0000 80 chrIV:9734052-9734132 1.0000 80 chrI:5411763-5411843 1.0000 80 chrIII:4932448-4932528 1.0000 80 chrII:3934242-3934322 1.0000 80 chrIV:7121489-7121569 1.0000 80 chrII:4566384-4566464 1.0000 80 chrV:5661145-5661225 1.0000 80 chrI:9127822-9127902 1.0000 80 chrIV:4743753-4743833 1.0000 80 chrIV:13880506-13880586 1.0000 80 chrII:10953366-10953446 1.0000 80 chrIII:3534326-3534406 1.0000 80 chrII:9274609-9274689 1.0000 80 chrV:5666494-5666574 1.0000 80 chrIV:6419301-6419381 1.0000 80 chrIII:5151680-5151760 1.0000 80 chrV:8178436-8178516 1.0000 80 chrI:318360-318440 1.0000 80 chrIII:9862624-9862704 1.0000 80 chrII:2045788-2045868 1.0000 80 chrV:185277-185357 1.0000 80 chrIII:4891167-4891247 1.0000 80 chrII:6597682-6597762 1.0000 80 chrII:6860199-6860279 1.0000 80 chrIII:13715072-13715152 1.0000 80 chrIV:8174424-8174504 1.0000 80 chrIV:1420733-1420813 1.0000 80 chrII:3808814-3808894 1.0000 80 chrIII:9832717-9832797 1.0000 80 chrIV:11022036-11022116 1.0000 80 chrII:11650198-11650278 1.0000 80 chrII:4320608-4320688 1.0000 80 chrIII:1427378-1427458 1.0000 80 chrII:12036225-12036305 1.0000 80 chrI:2905770-2905850 1.0000 80 chrII:4888612-4888692 1.0000 80 chrIV:11298306-11298386 1.0000 80 chrI:11612634-11612714 1.0000 80 chrII:11343150-11343230 1.0000 80 chrIV:13107052-13107132 1.0000 80 chrII:5906411-5906491 1.0000 80 chrI:9544482-9544562 1.0000 80 chrIV:16401580-16401660 1.0000 80 chrII:2815180-2815260 1.0000 80 chrII:12133089-12133169 1.0000 80 chrIII:2134084-2134164 1.0000 80 chrIII:13561408-13561488 1.0000 80 chrI:6858306-6858386 1.0000 80 chrIII:7377248-7377328 1.0000 80 chrIV:183697-183777 1.0000 80 chrIII:9566135-9566215 1.0000 80 chrV:13593770-13593850 1.0000 80 chrII:11536639-11536719 1.0000 80 chrIV:7954158-7954238 1.0000 80 chrI:2586768-2586848 1.0000 80 chrI:7984813-7984893 1.0000 80 chrI:9518926-9519006 1.0000 80 chrII:11261335-11261415 1.0000 80 chrV:16916839-16916919 1.0000 80 chrV:11483756-11483836 1.0000 80 chrV:12286455-12286535 1.0000 80 chrIII:5701634-5701714 1.0000 80 chrII:12945860-12945940 1.0000 80 chrI:10588075-10588155 1.0000 80 chrI:10750652-10750732 1.0000 80 chrIV:8133097-8133177 1.0000 80 chrII:1916511-1916591 1.0000 80 chrI:3212690-3212770 1.0000 80 chrIII:5963082-5963162 1.0000 80 chrV:11917332-11917412 1.0000 80 chrI:4653268-4653348 1.0000 80 chrI:8637426-8637506 1.0000 80 chrIV:13251517-13251597 1.0000 80 chrI:10634409-10634489 1.0000 80 chrI:9342747-9342827 1.0000 80 chrIV:4751984-4752064 1.0000 80 chrI:7352197-7352277 1.0000 80 chrI:3817379-3817459 1.0000 80 chrII:6091457-6091537 1.0000 80 chrIII:7776177-7776257 1.0000 80 chrV:6268136-6268216 1.0000 80 chrII:11680365-11680445 1.0000 80 chrII:8713733-8713813 1.0000 80 chrV:17983634-17983714 1.0000 80 chrII:4460484-4460564 1.0000 80 chrIII:5047911-5047991 1.0000 80 chrI:5573037-5573117 1.0000 80 chrII:3546677-3546757 1.0000 80 chrI:9853452-9853532 1.0000 80 chrI:11841749-11841829 1.0000 80 chrIV:14828374-14828454 1.0000 80 chrI:9901106-9901186 1.0000 80 chrIII:10330826-10330906 1.0000 80 chrI:7527624-7527704 1.0000 80 chrI:9583553-9583633 1.0000 80 chrIV:14755079-14755159 1.0000 80 chrIV:12127230-12127310 1.0000 80 chrII:13697030-13697110 1.0000 80 chrII:3806079-3806159 1.0000 80 chrIII:3471143-3471223 1.0000 80 chrI:10798382-10798462 1.0000 80 chrIV:10558400-10558480 1.0000 80 chrIII:10730678-10730758 1.0000 80 chrII:11974197-11974277 1.0000 80 chrIV:11176905-11176985 1.0000 80 chrII:14276569-14276649 1.0000 80 chrI:509593-509673 1.0000 80 chrII:11690137-11690217 1.0000 80 chrII:4474171-4474251 1.0000 80 chrV:16747135-16747215 1.0000 80 chrIV:4514316-4514396 1.0000 80 chrIII:8105241-8105321 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/worm/inference_raw/MEME/RankLinear2.0_40_lsl-1/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/worm/fasta/RankLinear2.0_40/lsl-1.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.302 C 0.197 G 0.199 T 0.303 Background letter frequencies (from file dataset with add-one prior applied): A 0.302 C 0.197 G 0.199 T 0.303 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF TACNGTAG MEME-1 width = 8 sites = 181 llr = 1475 E-value = 9.5e-218 ******************************************************************************** -------------------------------------------------------------------------------- Motif TACNGTAG MEME-1 Description -------------------------------------------------------------------------------- Simplified A :a:2::a2 pos.-specific C ::a3:::2 probability G :::2a::5 matrix T a::3:a:1 bits 2.3 * * 2.1 * * 1.9 * * 1.6 *** ** Relative 1.4 *** *** Entropy 1.2 *** *** (11.8 bits) 0.9 *** *** 0.7 *** *** 0.5 *** **** 0.2 *** **** 0.0 -------- Multilevel TACTGTAG consensus C sequence A G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TACNGTAG MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIV:14755079-14755159 55 1.29e-05 CTTCGCCATC TACCGTAG TCAGATTATT chrIII:7776177-7776257 30 1.29e-05 CTCTCTCATC TACCGTAG TTCGCTGACT chrII:1916511-1916591 52 1.29e-05 CTTCCTCGCC TACCGTAG TTCGCTGGTT chrV:16916839-16916919 62 1.29e-05 GTTTACAAAC TACCGTAG TCCTTGAAAT chrII:5906411-5906491 15 1.29e-05 CGACACTCAA TACCGTAG TGAATGATTC chrII:2045788-2045868 36 1.29e-05 ttccattgct taccgtag tttgcaagaT chrII:4566384-4566464 36 1.29e-05 AAAAACCTGA TACCGTAG TCTTTAGAGG chrIII:4932448-4932528 70 1.29e-05 CCAACAGAAT TACCGTAG GAA chrII:3449931-3450011 50 1.29e-05 CTCCGCCACC TACCGTAG TTCCCTTGAA chrII:3451169-3451249 53 1.29e-05 CTCTGCCACC TACCGTAG TCCCCTTGAA chrI:10235796-10235876 49 1.29e-05 AATAGAGATC TACCGTAG TACTTTAAAT chrI:7218195-7218275 70 1.29e-05 TTATGTCGCC TACCGTAG TCC chrV:687340-687420 58 1.29e-05 CTTTTCCATT TACCGTAG TAAAACAGTT chrII:3445496-3445576 63 1.29e-05 CTTCCTCGTC TACCGTAG TTTCTTCGAA chrII:3448939-3449019 53 1.29e-05 CTCCGCCACC TACCGTAG TTTCCAATGA chrII:3345078-3345158 55 1.29e-05 CTTCACCGTC TACCGTAG TCAGATTAAA chrII:1926110-1926190 70 1.29e-05 CTTTTACGCT TACCGTAG TTT chrV:18081916-18081996 69 1.29e-05 CGGAGTTGTG TACCGTAG TCCG chrII:2032122-2032202 51 1.29e-05 CTTTTTCGCT TACCGTAG TTTTGCGAGA chrII:1922848-1922928 51 1.29e-05 CTTTTTCGCT TACCGTAG TTTGGAAATT chrII:3350044-3350124 73 1.29e-05 AACAAAAATC TACCGTAG chrI:10798382-10798462 72 2.59e-05 TTTAAGCAAT TACGGTAG T chrII:4460484-4460564 1 2.59e-05 . TACGGTAG CCAAAGCTTT chrII:8713733-8713813 33 2.59e-05 tttaaatgcc tacggtag cacctgtgtc chrI:10634409-10634489 40 2.59e-05 GGTTCTGGGT TACGGTAG CCGGCAATTT chrI:6858306-6858386 34 2.59e-05 TCCGGTGAAC TACGGTAG ACGACGAAGT chrII:12133089-12133169 30 2.59e-05 TGACAATGAC TACGGTAG ATGGCGGAGT chrIII:1427378-1427458 50 2.59e-05 TGTTTGCAAC TACGGTAG TTTTCAAAAT chrV:16789207-16789287 13 2.59e-05 AATCCAGGAC TACGGTAG ACTTTGAAAT chrI:9658051-9658131 58 2.59e-05 GCAAAAAAAC TACGGTAG TTGGAAAAAG chrI:12907868-12907948 47 2.59e-05 GTAGGGTCAC TACGGTAG TTCTCAATGT chrIV:8205801-8205881 46 2.59e-05 cctttaaggt tacggtag tcggaaaatt chrIV:2893597-2893677 62 2.59e-05 GAGCGCTGGT TACGGTAG CTTGGATATC chrV:14698164-14698244 56 2.59e-05 AATTGATGAC TACGGTAG ATTGCGAAGT chrII:11958969-11959049 23 2.59e-05 ACCCTCGGGG TACGGTAG CTGAAAATTT chrI:6063100-6063180 44 2.59e-05 TTCGCCAGAC TACGGTAG ATGTGAAACT chrIII:4551626-4551706 26 2.59e-05 AGTTATTGGG TACGGTAG ACGAGGCAAG chrIII:11974275-11974355 31 2.59e-05 TCGCATTGAC TACGGTAG GTAATTGTGT chrV:18125480-18125560 26 2.59e-05 GCATCGTGGG TACGGTAG ACGGCAGAGT chrI:7588562-7588642 31 2.59e-05 GTTAAAAGAG TACGGTAG TCGTTGCGAG chrV:15867434-15867514 10 2.59e-05 ATATCGGTG TACGGTAG TTCGCAAGCT chrII:13122658-13122738 49 2.59e-05 GTAGACGAAC TACGGTAG ACGACGAAGT chrV:17985990-17986070 17 2.59e-05 aattgccggg tacggtag gcgtcggtgt chrIV:4514316-4514396 67 4.57e-05 ctttaaagag tactgtag tctcaa chrII:4474171-4474251 26 4.57e-05 ACGGCTTGGT TACTGTAG TCTAAACATT chrII:3806079-3806159 48 4.57e-05 tttaaatgac tactgtag cgctggtgtc chrIII:10330826-10330906 65 4.57e-05 CGCGATCGCG TACTGTAG TCCCATTT chrI:11841749-11841829 60 4.57e-05 TACCCCCGAG TACTGTAG CTAAAAAGTT chrII:11680365-11680445 53 4.57e-05 ctttaaagag tactgtag cttcgaatgt chrV:12286455-12286535 7 4.57e-05 aatgac tactgtag cgctcgtgtc chrIII:9566135-9566215 3 4.57e-05 GT TACTGTAG GAGTGCGCGT chrIII:7377248-7377328 5 4.57e-05 tgtc tactgtag cgctggtgtc chrIII:13561408-13561488 50 4.57e-05 CTTTAAAGTG TACTGTAG TCATTAATGT chrIII:2134084-2134164 14 4.57e-05 TATTCTGGGG TACTGTAG TTCGCATTTT chrIV:13107052-13107132 11 4.57e-05 tttaaatgac tactgtag cgctggtgtc chrII:12036225-12036305 73 4.57e-05 ctttaaagat tactgtag chrIV:11022036-11022116 56 4.57e-05 CCTTTAGGAT TACTGTAG AGATTTTGCT chrIV:8174424-8174504 24 4.57e-05 TTCAAAAGGG TACTGTAG TGTTTGTTGT chrII:10953366-10953446 49 4.57e-05 GCGCAATGGT TACTGTAG TGAGAAAATT chrIV:9734052-9734132 27 4.57e-05 ACTTTTGGGT TACTGTAG TTCGCTAGAG chrV:7064471-7064551 28 4.57e-05 ttcaaagcat tactgtag ttttcgctac chrI:4142972-4143052 25 4.57e-05 tttaaatgag tactgtag cgcttgtgtc chrII:9842287-9842367 50 4.57e-05 CGAAATGGGG TACTGTAG CGAGTAATGT chrV:102324-102404 44 4.57e-05 tttaaagaat tactgtag ttttcgctac chrIV:10285491-10285571 6 4.57e-05 TTGAG TACTGTAG CGATTGGTCT chrI:4824585-4824665 15 4.57e-05 tttaaagaat tactgtag ttttcgcgac chrIII:1423656-1423736 40 4.57e-05 ttttctgggt tactgtag ttctaaaagt chrIII:4856262-4856342 70 4.57e-05 CGATAGCGCT TACTGTAG AAT chrV:6510781-6510861 38 4.57e-05 AGTAGAAGGC TACTGTAG TTGCAAATAT chrIV:13356893-13356973 5 4.57e-05 tgcc tactgtag tgtttgtttg chrII:8593988-8594068 71 4.57e-05 CCTTTCGTAT TACTGTAG CT chrIII:6283160-6283240 57 4.57e-05 cttacaatag tactgtag tttcaaactt chrIII:11508984-11509064 41 4.57e-05 AACGCCTGAC TACTGTAG CAGGATTTAC chrIII:12444530-12444610 23 4.57e-05 tttaaatgag tactgtag cgcatgtgtc chrIV:5210777-5210857 65 4.57e-05 tttaaagggt tactgtag ttttcgcc chrV:10969055-10969135 44 4.57e-05 tttaaaagac tactgtag agcttgtgtt chrIII:8793479-8793559 21 4.57e-05 CACCGTCGAG TACTGTAG AAATCAGAAT chrIII:13505669-13505749 32 4.57e-05 tgtaaatgac tactgtag cgctggtgtc chrV:16405517-16405597 38 4.57e-05 AATCTCAAGT TACTGTAG GCAATCTGCA chrV:18134569-18134649 24 4.57e-05 TCTTCCGAAG TACTGTAG ATTTCGAAAT chrI:4185999-4186079 55 4.57e-05 TGCGGAAGAT TACTGTAG ATGGAGCCGG chrIII:7893373-7893453 39 4.57e-05 ttgaaaggat tactgtag ttttcgctgc chrI:3870454-3870534 42 4.57e-05 tttaaagaat tactgtag ttttcgctac chrV:6268136-6268216 11 6.54e-05 TCGATTTTGC TACAGTAG TCATAATTTA chrII:2815180-2815260 53 6.54e-05 CTTTCACAGC TACAGTAG TCGACGAGAA chrIV:13513200-13513280 18 6.54e-05 tcgagaaaat tacagtag tcttttttta chrV:17656740-17656820 23 6.54e-05 AACATCTGGG TACAGTAG TCTGTCGTGT chrIII:8128947-8129027 48 6.54e-05 actcaagcgc tacagtag tcttttaaag chrIV:14828374-14828454 62 7.81e-05 ACTTTCCAGC TACCGTAC CTGTGGGTAC chrV:17983634-17983714 64 7.81e-05 TTGCGCTGTC TACCGTAC CCAATTGAT chrI:7352197-7352277 19 7.81e-05 AACTCCCGGC TACCGTAC CCTGATATAT chrI:9518926-9519006 64 7.81e-05 CAACGCAAAT TACCGTAC TTCAAAAAT chrII:6860199-6860279 16 7.81e-05 TTTCGAAAAC TACCGTAC TCCTTCATTC chrIII:9862624-9862704 52 7.81e-05 GCGCACTGCT TACCGTAC TCGGTTACTG chrIII:3534326-3534406 20 7.81e-05 ATCGTAAAAA TACCGTAC CCCGAACGTA chrV:13560201-13560281 50 7.81e-05 cattgcgttt taccgtac ttccgtgttc chrV:15060738-15060818 9 7.81e-05 ttagaaac taccgtac tcttcaaagg chrV:16921699-16921779 42 7.81e-05 GTTTACGAAC TACCGTAC TCTGAGGAAA chrI:9342747-9342827 64 9.10e-05 CTTTAAGGAT TACGGTAC GGTTCTCTA chrIV:11298306-11298386 23 9.10e-05 AAATTCGGGG TACGGTAC TTCTTTAAAG chrIV:2223266-2223346 71 9.10e-05 CCTTGGAGAC TACGGTAC CC chrI:2980500-2980580 16 9.10e-05 AATTAAGGAA TACGGTAC ACAATCGCGG chrI:10588075-10588155 30 1.11e-04 GGGAGTGGGT TACTGTAC ATCTTAAAGG chrV:13593770-13593850 61 1.11e-04 GAGTGggaac tactgtac ctttaaaggc chrIII:5215693-5215773 59 1.11e-04 CAGACTGGGT TACTGTAC AGGAAAACTT chrII:6091457-6091537 73 1.30e-04 TGTCATTGTC TACCGTAA chrII:11536639-11536719 15 1.30e-04 AATTTTTAAT TACCGTAA TCCTTTAAAG chrV:5661145-5661225 34 1.30e-04 CAACATCGCA TACCGTAA TCCTCCCGTC chrV:19126761-19126841 26 1.30e-04 CCTTTAAACC TACCGTAA CCTTTTAATT chrIII:9488189-9488269 46 1.30e-04 AATTTAGAGC TACCGTAA CCTTTTTTAC chrI:8412612-8412692 57 1.30e-04 CCTTTAAAAC TACCGTAA CCTGGAAGTT chrII:3452513-3452593 50 1.30e-04 CTCCGCCACC TACCGTAA TTCCCTGTGA chrIII:4987810-4987890 11 1.30e-04 TTTAAAATGT TACCGTAA CTTTGCTCGa chrV:8521202-8521282 73 1.30e-04 CCTTTACTAT TACCGTAA chrIII:8105241-8105321 8 1.69e-04 ccaaaaa tacagtac ccggtcttga chrI:509593-509673 13 1.69e-04 agtttgaaac tacagtac tccttaaagg chrII:11974197-11974277 19 1.69e-04 AAGATAAGGA TACGGTAA CGGGGGGGAg chrIII:5963082-5963162 14 1.69e-04 agtttgaagt tacagtac tctttaaaTT chrIV:8133097-8133177 68 1.69e-04 agtttgaaat tacagtac tcttt chrIII:5701634-5701714 63 1.69e-04 TTTAAGTTTG TACAGTAC ACAACGCCGC chrII:11343150-11343230 44 1.69e-04 actacagtac tacagtac tctttgaagg chrI:11612634-11612714 69 1.69e-04 AAACAAGTGC TACAGTAC CCCT chrIV:13880506-13880586 64 1.69e-04 actttgaaat tacagtac actttcaag chrIV:4743753-4743833 26 1.69e-04 agtttaaaat tacagtac tctttaaagg chrI:5411763-5411843 65 1.69e-04 taaGTGATAT TACGGTAA ATATTGAT chrI:10808364-10808444 25 1.69e-04 GCCGACAGAC TACAGTAC TCAATTAGAA chrI:398507-398587 62 1.69e-04 TTAAACTGTG TACGGTAA CTATATTGAT chrI:6340799-6340879 36 1.69e-04 agttcgaggt tacagtac tctttaaagg chrII:14968427-14968507 32 1.69e-04 agtttgaaac tacagtac tctttaaagg chrII:13758101-13758181 29 1.69e-04 attttgaaac tacagtac tctttaaagg chrV:17658993-17659073 44 1.69e-04 CTTTGCCGCC TACAGTAC CCAATTTTTT chrIII:8831511-8831591 53 1.69e-04 GTCCCTTTAA TACAGTAC CCGGCAAAAG chrIII:12353332-12353412 23 1.69e-04 aatttaaaac tacagtac tctttaaagg chrIII:9473532-9473612 22 1.69e-04 GAAAAAACGG TACGGTAA GGAGTCGTAC chrV:18131232-18131312 48 1.69e-04 CTTCTTCAAC TACAGTAC CCCACACGAA chrV:4552535-4552615 71 1.69e-04 GTTAAATGGT TACGGTAA GT chrV:17658312-17658392 48 1.69e-04 CTTCGCTGAC TACAGTAC TCCAACGGAA chrIII:10730678-10730758 28 1.99e-04 GGTGTTGTAG TACTGTAA CACTCGTGAA chrIV:183697-183777 12 1.99e-04 TGAAAGAGAC TACTGTAA AAATTAAAGG chrII:14813279-14813359 31 1.99e-04 GTTTGCGGGT TACTGTAA CAGCGTTATT chrII:7690549-7690629 11 1.99e-04 TTAACACCGT TACTGTAA GTTTTAAAGA chrII:13697030-13697110 47 2.29e-04 agtttgacgc tacagtaa tcctgtaatc chrIV:12127230-12127310 7 2.29e-04 TTATTC TACAGTAA GATATTTCTA chrI:4653268-4653348 52 2.29e-04 CTTTAAAAAC TACAGTAA CCCTTGTCCG chrV:11917332-11917412 25 2.29e-04 GAAAATTATC TACAGTAA TCCTAAAGGC chrI:2905770-2905850 13 2.29e-04 AACATTCATG TACAGTAA CCTTAAAGGC chrV:8178436-8178516 10 2.29e-04 TTATGCTCG TACAGTAA CTTGTTATTT chrII:9274609-9274689 72 2.29e-04 acacaagcga tacagtaa t chrI:8425813-8425893 17 2.29e-04 TATGGTGCCT TACAGTAA TCCGAGTAGG chrI:8918864-8918944 58 2.29e-04 CTTTACCATC TACAGTAA CCTTCACTAA chrIV:4046741-4046821 29 2.29e-04 GACCACAGAC TACAGTAA CCCAAAACAC chrIV:12454435-12454515 46 2.29e-04 CAGAATTTTC TACAGTAA CCTTAAAGGC chrV:18137849-18137929 55 2.29e-04 CCTTTAAATT TACAGTAA TATTTGCGTG chrI:6758746-6758826 10 2.29e-04 TGCGCCTTC TACAGTAA TTTGTTCACG chrIV:14786518-14786598 4 2.29e-04 agc tacagtaa tctttaaagg chrIII:7853689-7853769 52 2.29e-04 tatttgaaat tacagtaa tctttaaagg chrII:11690137-11690217 28 2.49e-04 ATCATAAAAA TACCGTAT GAAAAACTTA chrIV:10558400-10558480 12 2.49e-04 TATTTCTTCC TACCGTAT ACTTTCAAGG chrI:10750652-10750732 48 2.49e-04 CATCGAGAAC TACCGTAT ACTCGCAGTT chrIII:4891167-4891247 47 2.49e-04 CCTTTAACAA TACCGTAT GCCGCGATTT chrIV:10357350-10357430 32 2.49e-04 CTGCATGAAC TACCGTAT CCGGCAGTAC chrIV:10546761-10546841 9 2.49e-04 TTTTCAAC TACCGTAT GCATTAAAGG chrV:6450274-6450354 14 2.49e-04 AATATAATCA TACCGTAT CCATTCAAAA chrI:5511849-5511929 68 2.49e-04 CGCTACGAAG TACCGTAT TGGCT chrI:9583553-9583633 50 2.69e-04 CAAAAATTTA TACGGTAT TTGCCTTCAA chrIV:16401580-16401660 36 2.69e-04 ATTTTCTGAC TACGGTAT GCAGCGGCGG chrIII:5151680-5151760 62 2.69e-04 cgagaccgga tacggtat tgttccctca chrIV:11498338-11498418 61 2.69e-04 AAAATTGACC TACGGTAT AGGCTACTTA chrV:10436815-10436895 37 2.69e-04 TCTGCCGGGT TACGGTAT ACAATTCTGT chrI:7984813-7984893 13 2.99e-04 TTCGTTCGAT TACTGTAT TCCATGCGAG chrII:5188114-5188194 68 2.99e-04 GAATTAGGAT TACTGTAT TCGCT chrII:9974777-9974857 61 2.99e-04 TACTCCGTAT TACTGTAT TTAATTAAAT chrIV:13251517-13251597 58 3.29e-04 agttcaaaat tacagtat actctttaaa chrI:9853452-9853532 37 3.63e-04 ATGCAGAAAC TACGGTGG GGAGCAATGT chrII:4888612-4888692 63 3.63e-04 TTTTATTAAT TACGGTCG GTTTAAAGGC chrII:3342151-3342231 63 3.63e-04 ATTCTTGGAG TACGGTGG ATTTTTTGCT chrIII:5047911-5047991 16 3.89e-04 CTTCGCCGAT TACTGTGG TTTTAAAGGA chrIV:4751984-4752064 66 4.15e-04 TCGTCACGAA TACAGTCG TTTCTTT chrII:12945860-12945940 52 5.51e-04 agttcaaaac tacagtcc tctttaaagg chrI:6089457-6089537 70 5.51e-04 TTTTAAATAC TACGGTCA CTT chrII:6923959-6924039 32 6.81e-04 CACTTGCTCG TACGGTGT GGTGCCCCGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TACNGTAG MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:14755079-14755159 1.3e-05 54_[+1]_18 chrIII:7776177-7776257 1.3e-05 29_[+1]_43 chrII:1916511-1916591 1.3e-05 51_[+1]_21 chrV:16916839-16916919 1.3e-05 61_[+1]_11 chrII:5906411-5906491 1.3e-05 14_[+1]_58 chrII:2045788-2045868 1.3e-05 35_[+1]_37 chrII:4566384-4566464 1.3e-05 35_[+1]_37 chrIII:4932448-4932528 1.3e-05 69_[+1]_3 chrII:3449931-3450011 1.3e-05 49_[+1]_23 chrII:3451169-3451249 1.3e-05 52_[+1]_20 chrI:10235796-10235876 1.3e-05 48_[+1]_24 chrI:7218195-7218275 1.3e-05 69_[+1]_3 chrV:687340-687420 1.3e-05 57_[+1]_15 chrII:3445496-3445576 1.3e-05 62_[+1]_10 chrII:3448939-3449019 1.3e-05 52_[+1]_20 chrII:3345078-3345158 1.3e-05 54_[+1]_18 chrII:1926110-1926190 1.3e-05 69_[+1]_3 chrV:18081916-18081996 1.3e-05 68_[+1]_4 chrII:2032122-2032202 1.3e-05 50_[+1]_22 chrII:1922848-1922928 1.3e-05 50_[+1]_22 chrII:3350044-3350124 1.3e-05 72_[+1] chrI:10798382-10798462 2.6e-05 71_[+1]_1 chrII:4460484-4460564 2.6e-05 [+1]_72 chrII:8713733-8713813 2.6e-05 32_[+1]_40 chrI:10634409-10634489 2.6e-05 39_[+1]_33 chrI:6858306-6858386 2.6e-05 33_[+1]_39 chrII:12133089-12133169 2.6e-05 29_[+1]_43 chrIII:1427378-1427458 2.6e-05 49_[+1]_23 chrV:16789207-16789287 2.6e-05 12_[+1]_60 chrI:9658051-9658131 2.6e-05 57_[+1]_15 chrI:12907868-12907948 2.6e-05 46_[+1]_26 chrIV:8205801-8205881 2.6e-05 45_[+1]_27 chrIV:2893597-2893677 2.6e-05 61_[+1]_11 chrV:14698164-14698244 2.6e-05 55_[+1]_17 chrII:11958969-11959049 2.6e-05 22_[+1]_50 chrI:6063100-6063180 2.6e-05 43_[+1]_29 chrIII:4551626-4551706 2.6e-05 25_[+1]_47 chrIII:11974275-11974355 2.6e-05 30_[+1]_42 chrV:18125480-18125560 2.6e-05 25_[+1]_47 chrI:7588562-7588642 2.6e-05 30_[+1]_42 chrV:15867434-15867514 2.6e-05 9_[+1]_63 chrII:13122658-13122738 2.6e-05 48_[+1]_24 chrV:17985990-17986070 2.6e-05 16_[+1]_56 chrIV:4514316-4514396 4.6e-05 66_[+1]_6 chrII:4474171-4474251 4.6e-05 25_[+1]_47 chrII:3806079-3806159 4.6e-05 47_[+1]_25 chrIII:10330826-10330906 4.6e-05 64_[+1]_8 chrI:11841749-11841829 4.6e-05 59_[+1]_13 chrII:11680365-11680445 4.6e-05 52_[+1]_20 chrV:12286455-12286535 4.6e-05 6_[+1]_66 chrIII:9566135-9566215 4.6e-05 2_[+1]_70 chrIII:7377248-7377328 4.6e-05 4_[+1]_68 chrIII:13561408-13561488 4.6e-05 49_[+1]_23 chrIII:2134084-2134164 4.6e-05 13_[+1]_59 chrIV:13107052-13107132 4.6e-05 10_[+1]_62 chrII:12036225-12036305 4.6e-05 72_[+1] chrIV:11022036-11022116 4.6e-05 55_[+1]_17 chrIV:8174424-8174504 4.6e-05 23_[+1]_49 chrII:10953366-10953446 4.6e-05 48_[+1]_24 chrIV:9734052-9734132 4.6e-05 26_[+1]_46 chrV:7064471-7064551 4.6e-05 27_[+1]_45 chrI:4142972-4143052 4.6e-05 24_[+1]_48 chrII:9842287-9842367 4.6e-05 49_[+1]_23 chrV:102324-102404 4.6e-05 43_[+1]_29 chrIV:10285491-10285571 4.6e-05 5_[+1]_67 chrI:4824585-4824665 4.6e-05 14_[+1]_58 chrIII:1423656-1423736 4.6e-05 39_[+1]_33 chrIII:4856262-4856342 4.6e-05 69_[+1]_3 chrV:6510781-6510861 4.6e-05 37_[+1]_35 chrIV:13356893-13356973 4.6e-05 4_[+1]_68 chrII:8593988-8594068 4.6e-05 70_[+1]_2 chrIII:6283160-6283240 4.6e-05 56_[+1]_16 chrIII:11508984-11509064 4.6e-05 40_[+1]_32 chrIII:12444530-12444610 4.6e-05 22_[+1]_50 chrIV:5210777-5210857 4.6e-05 64_[+1]_8 chrV:10969055-10969135 4.6e-05 43_[+1]_29 chrIII:8793479-8793559 4.6e-05 20_[+1]_52 chrIII:13505669-13505749 4.6e-05 31_[+1]_41 chrV:16405517-16405597 4.6e-05 37_[+1]_35 chrV:18134569-18134649 4.6e-05 23_[+1]_49 chrI:4185999-4186079 4.6e-05 54_[+1]_18 chrIII:7893373-7893453 4.6e-05 38_[+1]_34 chrI:3870454-3870534 4.6e-05 41_[+1]_31 chrV:6268136-6268216 6.5e-05 10_[+1]_62 chrII:2815180-2815260 6.5e-05 52_[+1]_20 chrIV:13513200-13513280 6.5e-05 17_[+1]_55 chrV:17656740-17656820 6.5e-05 22_[+1]_50 chrIII:8128947-8129027 6.5e-05 47_[+1]_25 chrIV:14828374-14828454 7.8e-05 61_[+1]_11 chrV:17983634-17983714 7.8e-05 63_[+1]_9 chrI:7352197-7352277 7.8e-05 18_[+1]_54 chrI:9518926-9519006 7.8e-05 63_[+1]_9 chrII:6860199-6860279 7.8e-05 15_[+1]_57 chrIII:9862624-9862704 7.8e-05 51_[+1]_21 chrIII:3534326-3534406 7.8e-05 19_[+1]_53 chrV:13560201-13560281 7.8e-05 49_[+1]_23 chrV:15060738-15060818 7.8e-05 8_[+1]_64 chrV:16921699-16921779 7.8e-05 41_[+1]_31 chrI:9342747-9342827 9.1e-05 63_[+1]_9 chrIV:11298306-11298386 9.1e-05 22_[+1]_50 chrIV:2223266-2223346 9.1e-05 70_[+1]_2 chrI:2980500-2980580 9.1e-05 15_[+1]_57 chrI:10588075-10588155 0.00011 29_[+1]_43 chrV:13593770-13593850 0.00011 60_[+1]_12 chrIII:5215693-5215773 0.00011 58_[+1]_14 chrII:6091457-6091537 0.00013 72_[+1] chrII:11536639-11536719 0.00013 14_[+1]_58 chrV:5661145-5661225 0.00013 33_[+1]_39 chrV:19126761-19126841 0.00013 25_[+1]_47 chrIII:9488189-9488269 0.00013 45_[+1]_27 chrI:8412612-8412692 0.00013 56_[+1]_16 chrII:3452513-3452593 0.00013 49_[+1]_23 chrIII:4987810-4987890 0.00013 10_[+1]_62 chrV:8521202-8521282 0.00013 72_[+1] chrIII:8105241-8105321 0.00017 7_[+1]_65 chrI:509593-509673 0.00017 12_[+1]_60 chrII:11974197-11974277 0.00017 18_[+1]_54 chrIII:5963082-5963162 0.00017 13_[+1]_59 chrIV:8133097-8133177 0.00017 67_[+1]_5 chrIII:5701634-5701714 0.00017 62_[+1]_10 chrII:11343150-11343230 0.00017 43_[+1]_29 chrI:11612634-11612714 0.00017 68_[+1]_4 chrIV:13880506-13880586 0.00017 63_[+1]_9 chrIV:4743753-4743833 0.00017 25_[+1]_47 chrI:5411763-5411843 0.00017 64_[+1]_8 chrI:10808364-10808444 0.00017 24_[+1]_48 chrI:398507-398587 0.00017 61_[+1]_11 chrI:6340799-6340879 0.00017 35_[+1]_37 chrII:14968427-14968507 0.00017 31_[+1]_41 chrII:13758101-13758181 0.00017 28_[+1]_44 chrV:17658993-17659073 0.00017 43_[+1]_29 chrIII:8831511-8831591 0.00017 52_[+1]_20 chrIII:12353332-12353412 0.00017 22_[+1]_50 chrIII:9473532-9473612 0.00017 21_[+1]_51 chrV:18131232-18131312 0.00017 47_[+1]_25 chrV:4552535-4552615 0.00017 70_[+1]_2 chrV:17658312-17658392 0.00017 47_[+1]_25 chrIII:10730678-10730758 0.0002 27_[+1]_45 chrIV:183697-183777 0.0002 11_[+1]_61 chrII:14813279-14813359 0.0002 30_[+1]_42 chrII:7690549-7690629 0.0002 10_[+1]_62 chrII:13697030-13697110 0.00023 46_[+1]_26 chrIV:12127230-12127310 0.00023 6_[+1]_66 chrI:4653268-4653348 0.00023 51_[+1]_21 chrV:11917332-11917412 0.00023 24_[+1]_48 chrI:2905770-2905850 0.00023 12_[+1]_60 chrV:8178436-8178516 0.00023 9_[+1]_63 chrII:9274609-9274689 0.00023 71_[+1]_1 chrI:8425813-8425893 0.00023 16_[+1]_56 chrI:8918864-8918944 0.00023 57_[+1]_15 chrIV:4046741-4046821 0.00023 28_[+1]_44 chrIV:12454435-12454515 0.00023 45_[+1]_27 chrV:18137849-18137929 0.00023 54_[+1]_18 chrI:6758746-6758826 0.00023 9_[+1]_63 chrIV:14786518-14786598 0.00023 3_[+1]_69 chrIII:7853689-7853769 0.00023 51_[+1]_21 chrII:11690137-11690217 0.00025 27_[+1]_45 chrIV:10558400-10558480 0.00025 11_[+1]_61 chrI:10750652-10750732 0.00025 47_[+1]_25 chrIII:4891167-4891247 0.00025 46_[+1]_26 chrIV:10357350-10357430 0.00025 31_[+1]_41 chrIV:10546761-10546841 0.00025 8_[+1]_64 chrV:6450274-6450354 0.00025 13_[+1]_59 chrI:5511849-5511929 0.00025 67_[+1]_5 chrI:9583553-9583633 0.00027 49_[+1]_23 chrIV:16401580-16401660 0.00027 35_[+1]_37 chrIII:5151680-5151760 0.00027 61_[+1]_11 chrIV:11498338-11498418 0.00027 60_[+1]_12 chrV:10436815-10436895 0.00027 36_[+1]_36 chrI:7984813-7984893 0.0003 12_[+1]_60 chrII:5188114-5188194 0.0003 67_[+1]_5 chrII:9974777-9974857 0.0003 60_[+1]_12 chrIV:13251517-13251597 0.00033 57_[+1]_15 chrI:9853452-9853532 0.00036 36_[+1]_36 chrII:4888612-4888692 0.00036 62_[+1]_10 chrII:3342151-3342231 0.00036 62_[+1]_10 chrIII:5047911-5047991 0.00039 15_[+1]_57 chrIV:4751984-4752064 0.00041 65_[+1]_7 chrII:12945860-12945940 0.00055 51_[+1]_21 chrI:6089457-6089537 0.00055 69_[+1]_3 chrII:6923959-6924039 0.00068 31_[+1]_41 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TACNGTAG MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TACNGTAG width=8 seqs=181 chrIV:14755079-14755159 ( 55) TACCGTAG 1 chrIII:7776177-7776257 ( 30) TACCGTAG 1 chrII:1916511-1916591 ( 52) TACCGTAG 1 chrV:16916839-16916919 ( 62) TACCGTAG 1 chrII:5906411-5906491 ( 15) TACCGTAG 1 chrII:2045788-2045868 ( 36) TACCGTAG 1 chrII:4566384-4566464 ( 36) TACCGTAG 1 chrIII:4932448-4932528 ( 70) TACCGTAG 1 chrII:3449931-3450011 ( 50) TACCGTAG 1 chrII:3451169-3451249 ( 53) TACCGTAG 1 chrI:10235796-10235876 ( 49) TACCGTAG 1 chrI:7218195-7218275 ( 70) TACCGTAG 1 chrV:687340-687420 ( 58) TACCGTAG 1 chrII:3445496-3445576 ( 63) TACCGTAG 1 chrII:3448939-3449019 ( 53) TACCGTAG 1 chrII:3345078-3345158 ( 55) TACCGTAG 1 chrII:1926110-1926190 ( 70) TACCGTAG 1 chrV:18081916-18081996 ( 69) TACCGTAG 1 chrII:2032122-2032202 ( 51) TACCGTAG 1 chrII:1922848-1922928 ( 51) TACCGTAG 1 chrII:3350044-3350124 ( 73) TACCGTAG 1 chrI:10798382-10798462 ( 72) TACGGTAG 1 chrII:4460484-4460564 ( 1) TACGGTAG 1 chrII:8713733-8713813 ( 33) TACGGTAG 1 chrI:10634409-10634489 ( 40) TACGGTAG 1 chrI:6858306-6858386 ( 34) TACGGTAG 1 chrII:12133089-12133169 ( 30) TACGGTAG 1 chrIII:1427378-1427458 ( 50) TACGGTAG 1 chrV:16789207-16789287 ( 13) TACGGTAG 1 chrI:9658051-9658131 ( 58) TACGGTAG 1 chrI:12907868-12907948 ( 47) TACGGTAG 1 chrIV:8205801-8205881 ( 46) TACGGTAG 1 chrIV:2893597-2893677 ( 62) TACGGTAG 1 chrV:14698164-14698244 ( 56) TACGGTAG 1 chrII:11958969-11959049 ( 23) TACGGTAG 1 chrI:6063100-6063180 ( 44) TACGGTAG 1 chrIII:4551626-4551706 ( 26) TACGGTAG 1 chrIII:11974275-11974355 ( 31) TACGGTAG 1 chrV:18125480-18125560 ( 26) TACGGTAG 1 chrI:7588562-7588642 ( 31) TACGGTAG 1 chrV:15867434-15867514 ( 10) TACGGTAG 1 chrII:13122658-13122738 ( 49) TACGGTAG 1 chrV:17985990-17986070 ( 17) TACGGTAG 1 chrIV:4514316-4514396 ( 67) TACTGTAG 1 chrII:4474171-4474251 ( 26) TACTGTAG 1 chrII:3806079-3806159 ( 48) TACTGTAG 1 chrIII:10330826-10330906 ( 65) TACTGTAG 1 chrI:11841749-11841829 ( 60) TACTGTAG 1 chrII:11680365-11680445 ( 53) TACTGTAG 1 chrV:12286455-12286535 ( 7) TACTGTAG 1 chrIII:9566135-9566215 ( 3) TACTGTAG 1 chrIII:7377248-7377328 ( 5) TACTGTAG 1 chrIII:13561408-13561488 ( 50) TACTGTAG 1 chrIII:2134084-2134164 ( 14) TACTGTAG 1 chrIV:13107052-13107132 ( 11) TACTGTAG 1 chrII:12036225-12036305 ( 73) TACTGTAG 1 chrIV:11022036-11022116 ( 56) TACTGTAG 1 chrIV:8174424-8174504 ( 24) TACTGTAG 1 chrII:10953366-10953446 ( 49) TACTGTAG 1 chrIV:9734052-9734132 ( 27) TACTGTAG 1 chrV:7064471-7064551 ( 28) TACTGTAG 1 chrI:4142972-4143052 ( 25) TACTGTAG 1 chrII:9842287-9842367 ( 50) TACTGTAG 1 chrV:102324-102404 ( 44) TACTGTAG 1 chrIV:10285491-10285571 ( 6) TACTGTAG 1 chrI:4824585-4824665 ( 15) TACTGTAG 1 chrIII:1423656-1423736 ( 40) TACTGTAG 1 chrIII:4856262-4856342 ( 70) TACTGTAG 1 chrV:6510781-6510861 ( 38) TACTGTAG 1 chrIV:13356893-13356973 ( 5) TACTGTAG 1 chrII:8593988-8594068 ( 71) TACTGTAG 1 chrIII:6283160-6283240 ( 57) TACTGTAG 1 chrIII:11508984-11509064 ( 41) TACTGTAG 1 chrIII:12444530-12444610 ( 23) TACTGTAG 1 chrIV:5210777-5210857 ( 65) TACTGTAG 1 chrV:10969055-10969135 ( 44) TACTGTAG 1 chrIII:8793479-8793559 ( 21) TACTGTAG 1 chrIII:13505669-13505749 ( 32) TACTGTAG 1 chrV:16405517-16405597 ( 38) TACTGTAG 1 chrV:18134569-18134649 ( 24) TACTGTAG 1 chrI:4185999-4186079 ( 55) TACTGTAG 1 chrIII:7893373-7893453 ( 39) TACTGTAG 1 chrI:3870454-3870534 ( 42) TACTGTAG 1 chrV:6268136-6268216 ( 11) TACAGTAG 1 chrII:2815180-2815260 ( 53) TACAGTAG 1 chrIV:13513200-13513280 ( 18) TACAGTAG 1 chrV:17656740-17656820 ( 23) TACAGTAG 1 chrIII:8128947-8129027 ( 48) TACAGTAG 1 chrIV:14828374-14828454 ( 62) TACCGTAC 1 chrV:17983634-17983714 ( 64) TACCGTAC 1 chrI:7352197-7352277 ( 19) TACCGTAC 1 chrI:9518926-9519006 ( 64) TACCGTAC 1 chrII:6860199-6860279 ( 16) TACCGTAC 1 chrIII:9862624-9862704 ( 52) TACCGTAC 1 chrIII:3534326-3534406 ( 20) TACCGTAC 1 chrV:13560201-13560281 ( 50) TACCGTAC 1 chrV:15060738-15060818 ( 9) TACCGTAC 1 chrV:16921699-16921779 ( 42) TACCGTAC 1 chrI:9342747-9342827 ( 64) TACGGTAC 1 chrIV:11298306-11298386 ( 23) TACGGTAC 1 chrIV:2223266-2223346 ( 71) TACGGTAC 1 chrI:2980500-2980580 ( 16) TACGGTAC 1 chrI:10588075-10588155 ( 30) TACTGTAC 1 chrV:13593770-13593850 ( 61) TACTGTAC 1 chrIII:5215693-5215773 ( 59) TACTGTAC 1 chrII:6091457-6091537 ( 73) TACCGTAA 1 chrII:11536639-11536719 ( 15) TACCGTAA 1 chrV:5661145-5661225 ( 34) TACCGTAA 1 chrV:19126761-19126841 ( 26) TACCGTAA 1 chrIII:9488189-9488269 ( 46) TACCGTAA 1 chrI:8412612-8412692 ( 57) TACCGTAA 1 chrII:3452513-3452593 ( 50) TACCGTAA 1 chrIII:4987810-4987890 ( 11) TACCGTAA 1 chrV:8521202-8521282 ( 73) TACCGTAA 1 chrIII:8105241-8105321 ( 8) TACAGTAC 1 chrI:509593-509673 ( 13) TACAGTAC 1 chrII:11974197-11974277 ( 19) TACGGTAA 1 chrIII:5963082-5963162 ( 14) TACAGTAC 1 chrIV:8133097-8133177 ( 68) TACAGTAC 1 chrIII:5701634-5701714 ( 63) TACAGTAC 1 chrII:11343150-11343230 ( 44) TACAGTAC 1 chrI:11612634-11612714 ( 69) TACAGTAC 1 chrIV:13880506-13880586 ( 64) TACAGTAC 1 chrIV:4743753-4743833 ( 26) TACAGTAC 1 chrI:5411763-5411843 ( 65) TACGGTAA 1 chrI:10808364-10808444 ( 25) TACAGTAC 1 chrI:398507-398587 ( 62) TACGGTAA 1 chrI:6340799-6340879 ( 36) TACAGTAC 1 chrII:14968427-14968507 ( 32) TACAGTAC 1 chrII:13758101-13758181 ( 29) TACAGTAC 1 chrV:17658993-17659073 ( 44) TACAGTAC 1 chrIII:8831511-8831591 ( 53) TACAGTAC 1 chrIII:12353332-12353412 ( 23) TACAGTAC 1 chrIII:9473532-9473612 ( 22) TACGGTAA 1 chrV:18131232-18131312 ( 48) TACAGTAC 1 chrV:4552535-4552615 ( 71) TACGGTAA 1 chrV:17658312-17658392 ( 48) TACAGTAC 1 chrIII:10730678-10730758 ( 28) TACTGTAA 1 chrIV:183697-183777 ( 12) TACTGTAA 1 chrII:14813279-14813359 ( 31) TACTGTAA 1 chrII:7690549-7690629 ( 11) TACTGTAA 1 chrII:13697030-13697110 ( 47) TACAGTAA 1 chrIV:12127230-12127310 ( 7) TACAGTAA 1 chrI:4653268-4653348 ( 52) TACAGTAA 1 chrV:11917332-11917412 ( 25) TACAGTAA 1 chrI:2905770-2905850 ( 13) TACAGTAA 1 chrV:8178436-8178516 ( 10) TACAGTAA 1 chrII:9274609-9274689 ( 72) TACAGTAA 1 chrI:8425813-8425893 ( 17) TACAGTAA 1 chrI:8918864-8918944 ( 58) TACAGTAA 1 chrIV:4046741-4046821 ( 29) TACAGTAA 1 chrIV:12454435-12454515 ( 46) TACAGTAA 1 chrV:18137849-18137929 ( 55) TACAGTAA 1 chrI:6758746-6758826 ( 10) TACAGTAA 1 chrIV:14786518-14786598 ( 4) TACAGTAA 1 chrIII:7853689-7853769 ( 52) TACAGTAA 1 chrII:11690137-11690217 ( 28) TACCGTAT 1 chrIV:10558400-10558480 ( 12) TACCGTAT 1 chrI:10750652-10750732 ( 48) TACCGTAT 1 chrIII:4891167-4891247 ( 47) TACCGTAT 1 chrIV:10357350-10357430 ( 32) TACCGTAT 1 chrIV:10546761-10546841 ( 9) TACCGTAT 1 chrV:6450274-6450354 ( 14) TACCGTAT 1 chrI:5511849-5511929 ( 68) TACCGTAT 1 chrI:9583553-9583633 ( 50) TACGGTAT 1 chrIV:16401580-16401660 ( 36) TACGGTAT 1 chrIII:5151680-5151760 ( 62) TACGGTAT 1 chrIV:11498338-11498418 ( 61) TACGGTAT 1 chrV:10436815-10436895 ( 37) TACGGTAT 1 chrI:7984813-7984893 ( 13) TACTGTAT 1 chrII:5188114-5188194 ( 68) TACTGTAT 1 chrII:9974777-9974857 ( 61) TACTGTAT 1 chrIV:13251517-13251597 ( 58) TACAGTAT 1 chrI:9853452-9853532 ( 37) TACGGTGG 1 chrII:4888612-4888692 ( 63) TACGGTCG 1 chrII:3342151-3342231 ( 63) TACGGTGG 1 chrIII:5047911-5047991 ( 16) TACTGTGG 1 chrIV:4751984-4752064 ( 66) TACAGTCG 1 chrII:12945860-12945940 ( 52) TACAGTCC 1 chrI:6089457-6089537 ( 70) TACGGTCA 1 chrII:6923959-6924039 ( 32) TACGGTGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TACNGTAG MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 7.69912 E= 9.5e-218 -1414 -1414 -1414 172 173 -1414 -1414 -1414 -1414 235 -1414 -1414 -42 43 19 -10 -1414 -1414 233 -1414 -1414 -1414 -1414 172 166 -315 -317 -1414 -69 2 137 -161 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TACNGTAG MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 181 E= 9.5e-218 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.226519 0.265193 0.226519 0.281768 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.955801 0.022099 0.022099 0.000000 0.187845 0.198895 0.513812 0.099448 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TACNGTAG MEME-1 regular expression -------------------------------------------------------------------------------- TAC[TCAG]GTAG -------------------------------------------------------------------------------- Time 6.70 secs. ******************************************************************************** ******************************************************************************** MOTIF WKGCGCAY MEME-2 width = 8 sites = 140 llr = 986 E-value = 4.7e-071 ******************************************************************************** -------------------------------------------------------------------------------- Motif WKGCGCAY MEME-2 Description -------------------------------------------------------------------------------- Simplified A 6:::::6: pos.-specific C :::a:834 probability G 14a:a11: matrix T 36:::2:5 bits 2.3 * 2.1 *** 1.9 *** 1.6 *** Relative 1.4 **** Entropy 1.2 **** (10.2 bits) 0.9 **** 0.7 ***** * 0.5 ******** 0.2 ******** 0.0 -------- Multilevel ATGCGCAT consensus TG CC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WKGCGCAY MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrI:509593-509673 28 1.39e-05 tactccttaa aggcgcac acactctttc chrII:13697030-13697110 70 1.39e-05 taatccttaa aggcgcac acc chrV:11917332-11917412 39 1.39e-05 GTAATCCTAA AGGCGCAC ACACAAAAAG chrI:10588075-10588155 45 1.39e-05 TACATCTTAA AGGCGCAC ACCTTTTTGA chrII:11536639-11536719 31 1.39e-05 AATCCTTTAA AGGCGCAC ACCTCTTTTT chrII:11343150-11343230 59 1.39e-05 tactctttga aggcgcac accttttctg chrI:2905770-2905850 27 1.39e-05 GTAACCTTAA AGGCGCAC GCCTTGAAAT chrV:185277-185357 9 1.39e-05 ctctctaa aggcgcac acacttttgg chrIII:5151680-5151760 12 1.39e-05 tactctttaa aggcgcac agcatttcga chrV:5666494-5666574 18 1.39e-05 taatctttaa aggcgcac aggtttattc chrIV:4743753-4743833 41 1.39e-05 tactctttaa aggcgcac gcctctttgc chrV:1701745-1701825 2 1.39e-05 A AGGCGCAC ACACAAAAGT chrIV:13513200-13513280 37 1.39e-05 ctttttttaa aggcgcac gtattttcgc chrI:6340799-6340879 51 1.39e-05 tactctttaa aggcgcac acccattcac chrII:14968427-14968507 47 1.39e-05 tactctttaa aggcgcac atatttttca chrII:13758101-13758181 44 1.39e-05 tactctttaa aggcgcac acTCCTTCTC chrIII:12353332-12353412 38 1.39e-05 tactctttaa aggcgcac acttttttgt chrIV:12454435-12454515 60 1.39e-05 GTAACCTTAA AGGCGCAC ATACGAAATC chrIV:12804866-12804946 48 1.39e-05 tatcctttaa aggcgcac accttttcga chrIII:7853689-7853769 67 1.39e-05 taatctttaa aggcgcac tctcgt chrIII:10330826-10330906 21 3.52e-05 ATAAATTTAA AGGCGCAT ATGTTATTCT chrII:12945860-12945940 67 3.52e-05 tcctctttaa aggcgcat gccttt chrV:8178436-8178516 42 3.52e-05 GTTTAATTAA AGGCGCAT TACTGATGCG chrIII:3534326-3534406 39 3.52e-05 CCGAACGTAA AGGCGCAT CCCTAATTAA chrII:4566384-4566464 51 3.52e-05 TAGTCTTTAG AGGCGCAT AGTTCAAGCT chrIII:4932448-4932528 25 3.52e-05 TGAGAATTAA AGGCGCAT GTCTGGAGTC chrI:5563747-5563827 29 3.52e-05 GTAAGCTTAA AGGCGCAT AACGCTTATT chrIV:10546761-10546841 24 3.52e-05 TATGCATTAA AGGCGCAT CACACATTTG chrI:6089457-6089537 16 3.52e-05 GTTTGAAAAA AGGCGCAT GCCACTATCT chrI:5511849-5511929 26 3.52e-05 TCCTATTTAA AGGCGCAT ACGGTCAATG chrV:7803720-7803800 21 3.52e-05 ATAATCTTAA AGGCGCAT GCAAAGAAAA chrV:18131232-18131312 24 3.52e-05 CGGGTACGCA ATGCGCAT TGCGTACTTC chrIV:2893597-2893677 14 3.52e-05 GTTGCTTTAA AGGCGCAT ACACCATCAA chrII:1926110-1926190 37 3.52e-05 GCGTCAATTC ATGCGCAT TGTGTTCATT chrV:11083128-11083208 27 3.52e-05 gtcttattga aggcgcat ttattgattc chrII:4523403-4523483 61 3.52e-05 AAATAATTCA AGGCGCAT CACTTTATCT chrII:4474171-4474251 6 7.20e-05 atGGA ATGCGCCT TTACGGCTTG chrI:3817379-3817459 58 7.20e-05 AAGGTGAGGC ATGCGCCT TTAAGTGTTC chrI:9342747-9342827 48 7.20e-05 CCAACCGACT ATGCGCCT TTAAGGATTA chrI:4653268-4653348 36 7.20e-05 AAATCGAGGC ATGCGCCT TTAAAAACTA chrI:3212690-3212770 36 7.20e-05 ACTTTTTAGC ATGCGCCT TTAAAATATT chrV:11483756-11483836 13 7.20e-05 ACTAAAGTCG ATGCGCCT TTAAGCTGGC chrIII:9566135-9566215 48 7.20e-05 GGAGTATGCA ATGCGCCT TTAATTTTGC chrIII:13561408-13561488 34 7.20e-05 ACTTTGAGCG ATGCGCCT TTAAAGTGTA chrII:3808814-3808894 58 7.20e-05 TTTTTAGGTT ATGCGCCT TTAATTTGCT chrV:19126761-19126841 11 7.20e-05 AATTTGTGTG ATGCGCCT TTAAACCTAC chrV:9703716-9703796 60 7.20e-05 TTTTTGACGC ATGCGCCT TTAAGTGTAC chrIV:2223266-2223346 1 7.20e-05 . AGGCGCCT TTTCTCGGGC chrI:12907868-12907948 72 7.20e-05 TGTACGCAAG TTGCGCAC A chrIV:8205801-8205881 31 7.20e-05 gaaaaattgc atgcgcct ttaaggttac chrV:14090751-14090831 45 7.20e-05 GTTTTGCGAT ATGCGCCT TTAAGATCGT chrII:8593988-8594068 56 7.20e-05 TCATTCCGAC ATGCGCCT TTCGTATTAC chrV:7064471-7064551 54 9.34e-05 acgagatatt ttgcgcat caaatatgtt chrI:9985689-9985769 48 9.34e-05 ggcgagaccc ttgcgcat taacgcgcct chrV:17983634-17983714 43 1.12e-04 tttgcgtaca atgcGCGC GCATTGCGCT chrIV:14786518-14786598 19 1.12e-04 taatctttaa aggcgcgc gtcttttttc chrI:2980500-2980580 59 1.35e-04 CAAATGACCC TTGCGCCT TTAAAATATT chrII:11690137-11690217 47 1.49e-04 AAAAACTTAA AGGCGCGT GCGTAAATAA chrV:6268136-6268216 30 1.49e-04 CATAATTTAA AGGCGCGT GAGCGAAAAC chrI:7352197-7352277 41 1.49e-04 ATATATTTAA AGGCGCGT GTTTTTAATC chrII:3445496-3445576 10 1.49e-04 ATATGAGCA ATGCGCGT CATTTGCAAT chrIII:8105241-8105321 55 1.87e-04 acaaacggaa gtgcgcct ttaaagagta chrIV:4514316-4514396 51 1.87e-04 gcaaaaaggt gtgcgcct ttaaagagta chrI:10798382-10798462 55 1.87e-04 TAGAAAATGT GTGCGCCT TTAAGCAATT chrII:11680365-11680445 37 1.87e-04 acaacagtgt gtgcgcct ttaaagagta chrI:2586768-2586848 73 1.87e-04 AAGGGaaggc gtgcgcct chrII:12036225-12036305 57 1.87e-04 ttaaaaagat gtgcgcct ttaaagatta chrIV:11022036-11022116 41 1.87e-04 AAAATGTTGT GTGCGCCT TTAGGATTAC chrII:6597682-6597762 65 1.87e-04 ATCTTGGTGT GTGCGCCT TTAAGATT chrIII:10083385-10083465 62 1.87e-04 taaaaaatct gtgcgcct ttaatCTATG chrI:398507-398587 44 1.87e-04 AAAAGAAGTC GTGCGCCT TTAAACTGTG chrV:11845661-11845741 62 1.87e-04 CTTCTTTATC GTGCGCCT TCAAATCTAA chrI:12901961-12902041 57 1.87e-04 gagtaattcc gtgcgcct ttaggaagAA chrIII:13173845-13173925 70 1.87e-04 gctaaaggat gtgcgcct ttg chrV:102324-102404 70 2.01e-04 acgagatatt ttgcgcgt caa chrI:4824585-4824665 57 2.01e-04 ttcaaatatg ttgcgcgt ttctcagaac chrII:2032122-2032202 4 2.01e-04 GGA TTGCGCGT CAATTCAGGT chrII:1922848-1922928 4 2.01e-04 TAA TTGCGCGT CAATTAATGT chrIII:7893373-7893453 65 2.01e-04 gcgaaatatt ttgcgcgt caaatatg chrII:3350044-3350124 20 2.01e-04 AGTGCGAGAA TTGCGCGT GGAGTGAAGT chrII:9842287-9842367 71 2.29e-04 GTAATGTTTC AGGCGTAC GA chrI:8918864-8918944 41 2.29e-04 CACTGGAGAA ATGCGTAC TTTACCATCT chrII:11261335-11261415 24 2.71e-04 GACGCATGAG GGGCGCGT CGCGTGCGCT chrIII:9862624-9862704 40 3.04e-04 ACCCTACCTT ACGCGCAC TGCTTACCGT chrIV:14755079-14755159 38 3.68e-04 CAGTTGTGTA TTGCGTAC TTCGCCATCT chrIII:7776177-7776257 13 3.68e-04 ATTATGTTCA TTGCGTAC TCTCTCATCT chrII:6091457-6091537 53 3.68e-04 ACTCTGGTGT TTGCGTAC TTTGTCATTG chrIV:4751984-4752064 26 3.68e-04 GTCTCTTTAA AGGCGCAA CCGAAAAAAG chrII:1916511-1916591 35 3.68e-04 TTGTGTGCAC TTGCGTAC TTCCTCGCCT chrIII:2134084-2134164 46 3.68e-04 GTAAACACCG TTGCGTAC CCGGCGCCTA chrII:12133089-12133169 60 3.68e-04 GCAGAGGTTT TTGCGTAC TTTGCATCAT chrII:2815180-2815260 26 3.68e-04 CGGTTCACCG TTGCGTAC TGCTGCACAC chrII:2045788-2045868 18 3.68e-04 cttgtgtgca ttgcgtac ttccattgct chrII:10953366-10953446 37 3.68e-04 GGAATTTTAA AGGCGCAA TGGTTACTGT chrII:3449931-3450011 33 3.68e-04 CGCAAACACG TTGCGTAC TCCGCCACCT chrV:17658993-17659073 27 3.68e-04 TGCCCCGATA TTGCGTAC TTTGCCGCCT chrII:3448939-3449019 36 3.68e-04 TGCAAACACG TTGCGTAC TCCGCCACCT chrII:3345078-3345158 38 3.68e-04 CAGTTGTGTA TTGCGTAC TTCACCGTCT chrV:18125480-18125560 60 3.68e-04 TGGCAAGTGT TTGCGTAC ATAGCAGTGT chrV:15060738-15060818 24 3.68e-04 tactcttcaa aggcgcaa acacttttgc chrV:17658312-17658392 31 3.68e-04 ACACTAGTCA TTGCGTAC TTCGCTGACT chrV:18134569-18134649 53 3.68e-04 CGCAAGGTGG TTGCGTAC TCGACATTCA chrIII:9832717-9832797 41 4.57e-04 CTTCGAGTGT TTGCGTAT CCACGTTGTT chrIV:11498338-11498418 24 4.57e-04 GTCGAGACCG ATGCGCAG ATATTCAGTG chrI:9853452-9853532 13 4.85e-04 TCTCGCCACG ATGCGCCA GAAGTAATGC chrIV:183697-183777 31 4.85e-04 AATTAAAGGG AGGCGCCA CATCTCTTCC chrIII:5963082-5963162 69 5.38e-04 acttctgtta ttgcggac tttg chrIV:8174424-8174504 70 5.38e-04 TTACGACAAA TTGCGGAC TTC chrV:5661145-5661225 16 5.38e-04 GTGGCGGTGT TTGCGGAC CAACATCGCA chrI:8425813-8425893 41 5.38e-04 TAGGGAGAGA TTGCGGAC CTGGTGCCGG chrII:3451169-3451249 36 5.38e-04 TGCGAACACG TTGCGGAC TCTGCCACCT chrI:7218195-7218275 41 5.38e-04 CTAAGAGTGT TTGCGGAC TTTAGTTCAT chrI:7588562-7588642 70 5.38e-04 GCGAAACTCA ACGCGCCT TTA chrIII:8793479-8793559 56 5.38e-04 CTGGCGGTGT TTGCGGAC TTTTGATGAC chrII:9974777-9974857 22 5.38e-04 CTCATGGTGT TTGCGGAC AACTGCGGAC chrI:9583553-9583633 1 7.83e-04 . AGGCACAC GGAGATGTAG chrIII:1423656-1423736 69 7.83e-04 cgcaaacact tggcgcca cgta chrII:13122658-13122738 72 7.83e-04 GAAGTACGTA ATGCACAC A chrI:9127822-9127902 46 8.65e-04 ACTACTACAA AAGCGCAC AGTGAACTCC chrI:10235796-10235876 6 8.65e-04 CGTTT TTGCGTGC ATTTGTCCGT chrV:18137849-18137929 66 8.65e-04 ACAGTAATAT TTGCGTGC ATTTTCG chrV:14597484-14597564 54 8.65e-04 AATCCCACAA GCGCGCAC CTTTAATTGT chrII:5188114-5188194 26 8.65e-04 AATAATGCAA ATGCGCTC CAGCGGACTT chrIV:10558400-10558480 27 9.87e-04 TATACTTTCA AGGCACAT TATACTTTTG chrI:10750652-10750732 7 9.87e-04 GAGGTA TGGCGCCG CATACGCAAA chrIII:4856262-4856342 23 9.87e-04 CCTTCAAGGG AGGTGCAT TCATGCGGAA chrII:3452513-3452593 11 9.87e-04 GCGTATTTTC AGGTGCAT AGTCCGCAAA chrIII:4551626-4551706 67 9.87e-04 TCACGTCAGA ATGCACAT CTTCGC chrV:18081916-18081996 16 9.87e-04 TTTTTTTTTA TTGCGCCG TACTACGGTA chrI:3684148-3684228 9 9.87e-04 GAGATTAA AGGTGCAT TGAGTTTTTG chrI:3870454-3870534 68 1.10e-03 acgggatact ttgcgtgt caaat chrIII:5701634-5701714 46 1.23e-03 CATTTAATGC ATGCACCT TTAAGTTTGT chrII:6923959-6924039 71 1.23e-03 GCAATCACCG TTGCACAC CG chrV:14698164-14698244 22 1.23e-03 CGACATGTTG TCGCGCGC GACTGACAAA chrV:4552535-4552615 51 1.30e-03 TTAAACAAGT AAGCGCCT TTGTTAAATG chrII:6860199-6860279 55 1.39e-03 CGAGACCATT TGGTGCAT TTAGTCAAAA chrII:14813279-14813359 23 1.39e-03 ATCTGCAGGT TTGCGGGT TACTGTAACA chrIII:3471143-3471223 55 1.47e-03 TAGATTTTAC TTGTGCCC CTTTAGAGGT chrIII:4891167-4891247 63 1.47e-03 ATGCCGCGAT TTGCGCTT TTCAAGTTTT chrIII:11974275-11974355 45 1.60e-03 GTAGGTAATT GTGTGCAC TTTTGCGTGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WKGCGCAY MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:509593-509673 1.4e-05 27_[+2]_45 chrII:13697030-13697110 1.4e-05 69_[+2]_3 chrV:11917332-11917412 1.4e-05 38_[+2]_34 chrI:10588075-10588155 1.4e-05 44_[+2]_28 chrII:11536639-11536719 1.4e-05 30_[+2]_42 chrII:11343150-11343230 1.4e-05 58_[+2]_14 chrI:2905770-2905850 1.4e-05 26_[+2]_46 chrV:185277-185357 1.4e-05 8_[+2]_64 chrIII:5151680-5151760 1.4e-05 11_[+2]_61 chrV:5666494-5666574 1.4e-05 17_[+2]_55 chrIV:4743753-4743833 1.4e-05 40_[+2]_32 chrV:1701745-1701825 1.4e-05 1_[+2]_71 chrIV:13513200-13513280 1.4e-05 36_[+2]_36 chrI:6340799-6340879 1.4e-05 50_[+2]_22 chrII:14968427-14968507 1.4e-05 46_[+2]_26 chrII:13758101-13758181 1.4e-05 43_[+2]_29 chrIII:12353332-12353412 1.4e-05 37_[+2]_35 chrIV:12454435-12454515 1.4e-05 59_[+2]_13 chrIV:12804866-12804946 1.4e-05 47_[+2]_25 chrIII:7853689-7853769 1.4e-05 66_[+2]_6 chrIII:10330826-10330906 3.5e-05 20_[+2]_52 chrII:12945860-12945940 3.5e-05 66_[+2]_6 chrV:8178436-8178516 3.5e-05 41_[+2]_31 chrIII:3534326-3534406 3.5e-05 38_[+2]_34 chrII:4566384-4566464 3.5e-05 50_[+2]_22 chrIII:4932448-4932528 3.5e-05 24_[+2]_48 chrI:5563747-5563827 3.5e-05 28_[+2]_44 chrIV:10546761-10546841 3.5e-05 23_[+2]_49 chrI:6089457-6089537 3.5e-05 15_[+2]_57 chrI:5511849-5511929 3.5e-05 25_[+2]_47 chrV:7803720-7803800 3.5e-05 20_[+2]_52 chrV:18131232-18131312 3.5e-05 23_[+2]_49 chrIV:2893597-2893677 3.5e-05 13_[+2]_59 chrII:1926110-1926190 3.5e-05 36_[+2]_36 chrV:11083128-11083208 3.5e-05 26_[+2]_46 chrII:4523403-4523483 3.5e-05 60_[+2]_12 chrII:4474171-4474251 7.2e-05 5_[+2]_67 chrI:3817379-3817459 7.2e-05 57_[+2]_15 chrI:9342747-9342827 7.2e-05 47_[+2]_25 chrI:4653268-4653348 7.2e-05 35_[+2]_37 chrI:3212690-3212770 7.2e-05 35_[+2]_37 chrV:11483756-11483836 7.2e-05 12_[+2]_60 chrIII:9566135-9566215 7.2e-05 47_[+2]_25 chrIII:13561408-13561488 7.2e-05 33_[+2]_39 chrII:3808814-3808894 7.2e-05 57_[+2]_15 chrV:19126761-19126841 7.2e-05 10_[+2]_62 chrV:9703716-9703796 7.2e-05 59_[+2]_13 chrIV:2223266-2223346 7.2e-05 [+2]_72 chrI:12907868-12907948 7.2e-05 71_[+2]_1 chrIV:8205801-8205881 7.2e-05 30_[+2]_42 chrV:14090751-14090831 7.2e-05 44_[+2]_28 chrII:8593988-8594068 7.2e-05 55_[+2]_17 chrV:7064471-7064551 9.3e-05 53_[+2]_19 chrI:9985689-9985769 9.3e-05 47_[+2]_25 chrV:17983634-17983714 0.00011 42_[+2]_30 chrIV:14786518-14786598 0.00011 18_[+2]_54 chrI:2980500-2980580 0.00013 58_[+2]_14 chrII:11690137-11690217 0.00015 46_[+2]_26 chrV:6268136-6268216 0.00015 29_[+2]_43 chrI:7352197-7352277 0.00015 40_[+2]_32 chrII:3445496-3445576 0.00015 9_[+2]_63 chrIII:8105241-8105321 0.00019 54_[+2]_18 chrIV:4514316-4514396 0.00019 50_[+2]_22 chrI:10798382-10798462 0.00019 54_[+2]_18 chrII:11680365-11680445 0.00019 36_[+2]_36 chrI:2586768-2586848 0.00019 72_[+2] chrII:12036225-12036305 0.00019 56_[+2]_16 chrIV:11022036-11022116 0.00019 40_[+2]_32 chrII:6597682-6597762 0.00019 64_[+2]_8 chrIII:10083385-10083465 0.00019 61_[+2]_11 chrI:398507-398587 0.00019 43_[+2]_29 chrV:11845661-11845741 0.00019 61_[+2]_11 chrI:12901961-12902041 0.00019 56_[+2]_16 chrIII:13173845-13173925 0.00019 69_[+2]_3 chrV:102324-102404 0.0002 69_[+2]_3 chrI:4824585-4824665 0.0002 56_[+2]_16 chrII:2032122-2032202 0.0002 3_[+2]_69 chrII:1922848-1922928 0.0002 3_[+2]_69 chrIII:7893373-7893453 0.0002 64_[+2]_8 chrII:3350044-3350124 0.0002 19_[+2]_53 chrII:9842287-9842367 0.00023 70_[+2]_2 chrI:8918864-8918944 0.00023 40_[+2]_32 chrII:11261335-11261415 0.00027 23_[+2]_49 chrIII:9862624-9862704 0.0003 39_[+2]_33 chrIV:14755079-14755159 0.00037 37_[+2]_35 chrIII:7776177-7776257 0.00037 12_[+2]_60 chrII:6091457-6091537 0.00037 52_[+2]_20 chrIV:4751984-4752064 0.00037 25_[+2]_47 chrII:1916511-1916591 0.00037 34_[+2]_38 chrIII:2134084-2134164 0.00037 45_[+2]_27 chrII:12133089-12133169 0.00037 59_[+2]_13 chrII:2815180-2815260 0.00037 25_[+2]_47 chrII:2045788-2045868 0.00037 17_[+2]_55 chrII:10953366-10953446 0.00037 36_[+2]_36 chrII:3449931-3450011 0.00037 32_[+2]_40 chrV:17658993-17659073 0.00037 26_[+2]_46 chrII:3448939-3449019 0.00037 35_[+2]_37 chrII:3345078-3345158 0.00037 37_[+2]_35 chrV:18125480-18125560 0.00037 59_[+2]_13 chrV:15060738-15060818 0.00037 23_[+2]_49 chrV:17658312-17658392 0.00037 30_[+2]_42 chrV:18134569-18134649 0.00037 52_[+2]_20 chrIII:9832717-9832797 0.00046 40_[+2]_32 chrIV:11498338-11498418 0.00046 23_[+2]_49 chrI:9853452-9853532 0.00049 12_[+2]_60 chrIV:183697-183777 0.00049 30_[+2]_42 chrIII:5963082-5963162 0.00054 68_[+2]_4 chrIV:8174424-8174504 0.00054 69_[+2]_3 chrV:5661145-5661225 0.00054 15_[+2]_57 chrI:8425813-8425893 0.00054 40_[+2]_32 chrII:3451169-3451249 0.00054 35_[+2]_37 chrI:7218195-7218275 0.00054 40_[+2]_32 chrI:7588562-7588642 0.00054 69_[+2]_3 chrIII:8793479-8793559 0.00054 55_[+2]_17 chrII:9974777-9974857 0.00054 21_[+2]_51 chrI:9583553-9583633 0.00078 [+2]_72 chrIII:1423656-1423736 0.00078 68_[+2]_4 chrII:13122658-13122738 0.00078 71_[+2]_1 chrI:9127822-9127902 0.00087 45_[+2]_27 chrI:10235796-10235876 0.00087 5_[+2]_67 chrV:18137849-18137929 0.00087 65_[+2]_7 chrV:14597484-14597564 0.00087 53_[+2]_19 chrII:5188114-5188194 0.00087 25_[+2]_47 chrIV:10558400-10558480 0.00099 26_[+2]_46 chrI:10750652-10750732 0.00099 6_[+2]_66 chrIII:4856262-4856342 0.00099 22_[+2]_50 chrII:3452513-3452593 0.00099 10_[+2]_62 chrIII:4551626-4551706 0.00099 66_[+2]_6 chrV:18081916-18081996 0.00099 15_[+2]_57 chrI:3684148-3684228 0.00099 8_[+2]_64 chrI:3870454-3870534 0.0011 67_[+2]_5 chrIII:5701634-5701714 0.0012 45_[+2]_27 chrII:6923959-6924039 0.0012 70_[+2]_2 chrV:14698164-14698244 0.0012 21_[+2]_51 chrV:4552535-4552615 0.0013 50_[+2]_22 chrII:6860199-6860279 0.0014 54_[+2]_18 chrII:14813279-14813359 0.0014 22_[+2]_50 chrIII:3471143-3471223 0.0015 54_[+2]_18 chrIII:4891167-4891247 0.0015 62_[+2]_10 chrIII:11974275-11974355 0.0016 44_[+2]_28 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WKGCGCAY MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF WKGCGCAY width=8 seqs=140 chrI:509593-509673 ( 28) AGGCGCAC 1 chrII:13697030-13697110 ( 70) AGGCGCAC 1 chrV:11917332-11917412 ( 39) AGGCGCAC 1 chrI:10588075-10588155 ( 45) AGGCGCAC 1 chrII:11536639-11536719 ( 31) AGGCGCAC 1 chrII:11343150-11343230 ( 59) AGGCGCAC 1 chrI:2905770-2905850 ( 27) AGGCGCAC 1 chrV:185277-185357 ( 9) AGGCGCAC 1 chrIII:5151680-5151760 ( 12) AGGCGCAC 1 chrV:5666494-5666574 ( 18) AGGCGCAC 1 chrIV:4743753-4743833 ( 41) AGGCGCAC 1 chrV:1701745-1701825 ( 2) AGGCGCAC 1 chrIV:13513200-13513280 ( 37) AGGCGCAC 1 chrI:6340799-6340879 ( 51) AGGCGCAC 1 chrII:14968427-14968507 ( 47) AGGCGCAC 1 chrII:13758101-13758181 ( 44) AGGCGCAC 1 chrIII:12353332-12353412 ( 38) AGGCGCAC 1 chrIV:12454435-12454515 ( 60) AGGCGCAC 1 chrIV:12804866-12804946 ( 48) AGGCGCAC 1 chrIII:7853689-7853769 ( 67) AGGCGCAC 1 chrIII:10330826-10330906 ( 21) AGGCGCAT 1 chrII:12945860-12945940 ( 67) AGGCGCAT 1 chrV:8178436-8178516 ( 42) AGGCGCAT 1 chrIII:3534326-3534406 ( 39) AGGCGCAT 1 chrII:4566384-4566464 ( 51) AGGCGCAT 1 chrIII:4932448-4932528 ( 25) AGGCGCAT 1 chrI:5563747-5563827 ( 29) AGGCGCAT 1 chrIV:10546761-10546841 ( 24) AGGCGCAT 1 chrI:6089457-6089537 ( 16) AGGCGCAT 1 chrI:5511849-5511929 ( 26) AGGCGCAT 1 chrV:7803720-7803800 ( 21) AGGCGCAT 1 chrV:18131232-18131312 ( 24) ATGCGCAT 1 chrIV:2893597-2893677 ( 14) AGGCGCAT 1 chrII:1926110-1926190 ( 37) ATGCGCAT 1 chrV:11083128-11083208 ( 27) AGGCGCAT 1 chrII:4523403-4523483 ( 61) AGGCGCAT 1 chrII:4474171-4474251 ( 6) ATGCGCCT 1 chrI:3817379-3817459 ( 58) ATGCGCCT 1 chrI:9342747-9342827 ( 48) ATGCGCCT 1 chrI:4653268-4653348 ( 36) ATGCGCCT 1 chrI:3212690-3212770 ( 36) ATGCGCCT 1 chrV:11483756-11483836 ( 13) ATGCGCCT 1 chrIII:9566135-9566215 ( 48) ATGCGCCT 1 chrIII:13561408-13561488 ( 34) ATGCGCCT 1 chrII:3808814-3808894 ( 58) ATGCGCCT 1 chrV:19126761-19126841 ( 11) ATGCGCCT 1 chrV:9703716-9703796 ( 60) ATGCGCCT 1 chrIV:2223266-2223346 ( 1) AGGCGCCT 1 chrI:12907868-12907948 ( 72) TTGCGCAC 1 chrIV:8205801-8205881 ( 31) ATGCGCCT 1 chrV:14090751-14090831 ( 45) ATGCGCCT 1 chrII:8593988-8594068 ( 56) ATGCGCCT 1 chrV:7064471-7064551 ( 54) TTGCGCAT 1 chrI:9985689-9985769 ( 48) TTGCGCAT 1 chrV:17983634-17983714 ( 43) ATGCGCGC 1 chrIV:14786518-14786598 ( 19) AGGCGCGC 1 chrI:2980500-2980580 ( 59) TTGCGCCT 1 chrII:11690137-11690217 ( 47) AGGCGCGT 1 chrV:6268136-6268216 ( 30) AGGCGCGT 1 chrI:7352197-7352277 ( 41) AGGCGCGT 1 chrII:3445496-3445576 ( 10) ATGCGCGT 1 chrIII:8105241-8105321 ( 55) GTGCGCCT 1 chrIV:4514316-4514396 ( 51) GTGCGCCT 1 chrI:10798382-10798462 ( 55) GTGCGCCT 1 chrII:11680365-11680445 ( 37) GTGCGCCT 1 chrI:2586768-2586848 ( 73) GTGCGCCT 1 chrII:12036225-12036305 ( 57) GTGCGCCT 1 chrIV:11022036-11022116 ( 41) GTGCGCCT 1 chrII:6597682-6597762 ( 65) GTGCGCCT 1 chrIII:10083385-10083465 ( 62) GTGCGCCT 1 chrI:398507-398587 ( 44) GTGCGCCT 1 chrV:11845661-11845741 ( 62) GTGCGCCT 1 chrI:12901961-12902041 ( 57) GTGCGCCT 1 chrIII:13173845-13173925 ( 70) GTGCGCCT 1 chrV:102324-102404 ( 70) TTGCGCGT 1 chrI:4824585-4824665 ( 57) TTGCGCGT 1 chrII:2032122-2032202 ( 4) TTGCGCGT 1 chrII:1922848-1922928 ( 4) TTGCGCGT 1 chrIII:7893373-7893453 ( 65) TTGCGCGT 1 chrII:3350044-3350124 ( 20) TTGCGCGT 1 chrII:9842287-9842367 ( 71) AGGCGTAC 1 chrI:8918864-8918944 ( 41) ATGCGTAC 1 chrII:11261335-11261415 ( 24) GGGCGCGT 1 chrIII:9862624-9862704 ( 40) ACGCGCAC 1 chrIV:14755079-14755159 ( 38) TTGCGTAC 1 chrIII:7776177-7776257 ( 13) TTGCGTAC 1 chrII:6091457-6091537 ( 53) TTGCGTAC 1 chrIV:4751984-4752064 ( 26) AGGCGCAA 1 chrII:1916511-1916591 ( 35) TTGCGTAC 1 chrIII:2134084-2134164 ( 46) TTGCGTAC 1 chrII:12133089-12133169 ( 60) TTGCGTAC 1 chrII:2815180-2815260 ( 26) TTGCGTAC 1 chrII:2045788-2045868 ( 18) TTGCGTAC 1 chrII:10953366-10953446 ( 37) AGGCGCAA 1 chrII:3449931-3450011 ( 33) TTGCGTAC 1 chrV:17658993-17659073 ( 27) TTGCGTAC 1 chrII:3448939-3449019 ( 36) TTGCGTAC 1 chrII:3345078-3345158 ( 38) TTGCGTAC 1 chrV:18125480-18125560 ( 60) TTGCGTAC 1 chrV:15060738-15060818 ( 24) AGGCGCAA 1 chrV:17658312-17658392 ( 31) TTGCGTAC 1 chrV:18134569-18134649 ( 53) TTGCGTAC 1 chrIII:9832717-9832797 ( 41) TTGCGTAT 1 chrIV:11498338-11498418 ( 24) ATGCGCAG 1 chrI:9853452-9853532 ( 13) ATGCGCCA 1 chrIV:183697-183777 ( 31) AGGCGCCA 1 chrIII:5963082-5963162 ( 69) TTGCGGAC 1 chrIV:8174424-8174504 ( 70) TTGCGGAC 1 chrV:5661145-5661225 ( 16) TTGCGGAC 1 chrI:8425813-8425893 ( 41) TTGCGGAC 1 chrII:3451169-3451249 ( 36) TTGCGGAC 1 chrI:7218195-7218275 ( 41) TTGCGGAC 1 chrI:7588562-7588642 ( 70) ACGCGCCT 1 chrIII:8793479-8793559 ( 56) TTGCGGAC 1 chrII:9974777-9974857 ( 22) TTGCGGAC 1 chrI:9583553-9583633 ( 1) AGGCACAC 1 chrIII:1423656-1423736 ( 69) TGGCGCCA 1 chrII:13122658-13122738 ( 72) ATGCACAC 1 chrI:9127822-9127902 ( 46) AAGCGCAC 1 chrI:10235796-10235876 ( 6) TTGCGTGC 1 chrV:18137849-18137929 ( 66) TTGCGTGC 1 chrV:14597484-14597564 ( 54) GCGCGCAC 1 chrII:5188114-5188194 ( 26) ATGCGCTC 1 chrIV:10558400-10558480 ( 27) AGGCACAT 1 chrI:10750652-10750732 ( 7) TGGCGCCG 1 chrIII:4856262-4856342 ( 23) AGGTGCAT 1 chrII:3452513-3452593 ( 11) AGGTGCAT 1 chrIII:4551626-4551706 ( 67) ATGCACAT 1 chrV:18081916-18081996 ( 16) TTGCGCCG 1 chrI:3684148-3684228 ( 9) AGGTGCAT 1 chrI:3870454-3870534 ( 68) TTGCGTGT 1 chrIII:5701634-5701714 ( 46) ATGCACCT 1 chrII:6923959-6924039 ( 71) TTGCACAC 1 chrV:14698164-14698244 ( 22) TCGCGCGC 1 chrV:4552535-4552615 ( 51) AAGCGCCT 1 chrII:6860199-6860279 ( 55) TGGTGCAT 1 chrII:14813279-14813359 ( 23) TTGCGGGT 1 chrIII:3471143-3471223 ( 55) TTGTGCCC 1 chrIII:4891167-4891247 ( 63) TTGCGCTT 1 chrIII:11974275-11974355 ( 45) GTGTGCAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WKGCGCAY MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 7.11846 E= 4.7e-071 88 -1377 -80 12 -440 -278 93 93 -1377 -1377 233 -1377 -1377 228 -1377 -282 -282 -1377 227 -1377 -1377 200 -163 -101 95 47 -63 -440 -282 112 -321 74 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WKGCGCAY MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 140 E= 4.7e-071 0.557143 0.000000 0.114286 0.328571 0.014286 0.028571 0.378571 0.578571 0.000000 0.000000 1.000000 0.000000 0.000000 0.957143 0.000000 0.042857 0.042857 0.000000 0.957143 0.000000 0.000000 0.785714 0.064286 0.150000 0.585714 0.271429 0.128571 0.014286 0.042857 0.428571 0.021429 0.507143 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WKGCGCAY MEME-2 regular expression -------------------------------------------------------------------------------- [AT][TG]GCGC[AC][TC] -------------------------------------------------------------------------------- Time 10.14 secs. ******************************************************************************** ******************************************************************************** MOTIF TCGYBGCG MEME-3 width = 8 sites = 83 llr = 659 E-value = 5.2e-045 ******************************************************************************** -------------------------------------------------------------------------------- Motif TCGYBGCG MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::::12:: pos.-specific C :a:62:a: probability G 1:9:45:a matrix T 8:1432:: bits 2.3 * * 2.1 * ** 1.9 ** ** 1.6 ** ** Relative 1.4 ** ** Entropy 1.2 **** ** (11.5 bits) 0.9 **** ** 0.7 **** ** 0.5 **** *** 0.2 ******** 0.0 -------- Multilevel TCGCGGCG consensus TTA sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCGYBGCG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrV:18137849-18137929 8 3.63e-06 ACACACA TCGCGGCG AGACCCGTGC chrIII:10330826-10330906 51 1.28e-05 GAGATGGGCA TCGCCGCG ATCGCGTACT chrII:5906411-5906491 31 1.28e-05 AGTGAATGAT TCGCTGCG AGACCCAACC chrII:6860199-6860279 39 1.28e-05 CATTCGCATA TCGCTGCG AGACCATTTG chrII:6597682-6597762 30 1.28e-05 cggaatggtc tcgccgcg cgcaccGATT chrIII:8492111-8492191 26 1.28e-05 TTCATGGGTC TCGCCGCG AAATAAGTAA chrIII:7893373-7893453 50 1.28e-05 actgtagttt tcgctgcg aaatattttg chrI:3817379-3817459 32 1.83e-05 GGGAAGTGGA TCGTGGCG AGACCCTGAA chrIII:11508984-11509064 17 1.83e-05 TGCGGCATGA TCGTGGCG AGACCCAACG chrIII:3471143-3471223 25 3.79e-05 TAGTAGTAGT TCGTTGCG AGACCCATCA chrV:6268136-6268216 55 3.79e-05 AACATTGCAA TCGTCGCG GGACCTTTAT chrIII:13561408-13561488 2 3.79e-05 T TCGCGACG AGACCTGATT chrII:4320608-4320688 41 3.79e-05 AACTACTCAA TCGTTGCG AAACCCGTGC chrII:3934242-3934322 44 3.79e-05 AATATGCAAA TCGTTGCG AGACCCATTG chrIII:4932448-4932528 49 3.79e-05 AGTCCAGCTT TCGTTGCG AGACCAACAG chrIV:10546761-10546841 51 3.79e-05 GGCTGGGGTC TCGCGACG ACCAGTCCTT chrI:4824585-4824665 26 3.79e-05 actgtagttt tcgcgacg agatattttg chrIII:8831511-8831591 9 3.79e-05 GTCAAATA TCGTTGCG AGAGTTTCTC chrV:14090751-14090831 14 3.79e-05 ACAAAGCAAG TCGTTGCG ATACCATCTT chrV:4195437-4195517 48 3.79e-05 CTGATGGTTT TCGTTGCG AGACCCGGGC chrV:14597484-14597564 25 3.79e-05 AAGACTCTAG TCGTTGCG AGACCATTGG chrI:6063100-6063180 20 3.79e-05 AAATTCCCTT TCGTTGCG AGACCATTCG chrI:7588562-7588642 39 3.79e-05 AGTACGGTAG TCGTTGCG AGATATCCCG chrI:5411763-5411843 16 4.58e-05 taaaccactt tcgcgtcg agacccatta chrIV:13513200-13513280 71 4.58e-05 caaaaatttg tcgcgtcg ag chrII:14968427-14968507 73 4.58e-05 caaaaatttg tcgcgtcg chrIV:11498338-11498418 10 4.58e-05 ATTTATGAG TCGCGTCG AGACCGATGC chrI:9583553-9583633 31 5.97e-05 CAAGCGGGTC TCGCCACG ACAAAAATTT chrI:9853452-9853532 5 5.97e-05 GGTC TCGCCACG ATGCGCCAGA chrV:16916839-16916919 22 5.97e-05 actgtagatt tcgctacg agatattcta chrIV:11022036-11022116 5 5.97e-05 ggtc tcgccacg cgTTGCAAAT chrI:5563747-5563827 59 5.97e-05 GTTATTGGTC TCGCCACG TCCGACTACC chrV:7064471-7064551 39 5.97e-05 actgtagttt tcgctacg agatattttg chrV:102324-102404 55 5.97e-05 actgtagttt tcgctacg agatattttg chrI:5511849-5511929 57 5.97e-05 CTAGCTGGTT TCGCTACG AAGTACCGTA chrI:3870454-3870534 53 5.97e-05 actgtagttt tcgctacg ggatactttg chrIII:13173845-13173925 41 5.97e-05 TCCCAATAtt tcgccacg ttttgttaaa chrII:11261335-11261415 37 6.57e-05 CGCGTCGCGT GCGCTGCG TGCTTGCGGA chrI:8918864-8918944 15 6.57e-05 CGAAACACGC GCGCTGCG TCTGCAAACA chrI:8412612-8412692 11 6.57e-05 TGAACCATAT GCGCTGCG AGACCCAAAG chrV:16405517-16405597 61 6.57e-05 CTGCAAATTT GCGCCGCG GTGTTTGCGG chrI:2905770-2905850 51 8.80e-05 AAATGTGTTT TCGCTTCG AGACCATCCG chrI:12901961-12902041 29 8.80e-05 aaactttttc tcgcttcg agacccattc chrIII:12353332-12353412 72 8.80e-05 caaaaatttg tcgcttcg a chrIII:5047911-5047991 60 9.36e-05 GATTGAGGTC TCGCAGCG AGCTGGGTAT chrIV:10285491-10285571 23 9.36e-05 GCGATTGGTC TCGCAGCG ATGTTAATTT chrIII:4856262-4856342 46 9.36e-05 CGGAAGAGTC TCGCAGCG AAAACGCGAT chrV:11917332-11917412 71 9.72e-05 TTTTCAAAAc gcgtggcg ag chrIII:11974275-11974355 57 9.72e-05 GTGCACTTTT GCGTGGCG GTGTATGCAC chrI:9985689-9985769 34 9.72e-05 aatgggtttc gcgtggcg agacccttgc chrI:509593-509673 70 1.06e-04 caaaaggttg tcgtgtcg aga chrV:12286455-12286535 18 1.06e-04 actgtagcgc tcgtgtcg atttacgggc chrIII:5151680-5151760 46 1.06e-04 caaaaatgta tcgtgtcg agaccggata chrIV:12804866-12804946 73 1.06e-04 cgaaaatgtg tcgtgtcg chrIV:14786518-14786598 53 1.06e-04 caaaatgttg tcgtgtcg agacctgcag chrIV:4751984-4752064 56 1.27e-04 CGCGCAGGTC TCGTCACG AATACAGTCG chrI:9342747-9342827 16 1.27e-04 GTGTTGGGTC TCGTCACG AACACAAAAT chrIII:4891167-4891247 4 1.40e-04 CGA GCGTTGCG AGACCTCATC chrV:6450274-6450354 40 1.40e-04 AACTTCCTGA GCGTTGCG AGACCTGTCC chrIV:11176905-11176985 12 1.70e-04 ACGTTTTCAT TCGTTTCG TAGTAATATT chrI:3212690-3212770 6 1.70e-04 GGAGA TCGCGCCG AGACCCGCTC chrIII:5701634-5701714 7 1.70e-04 GTTGGG TCTCGGCG GGAGAACTTA chrV:4552535-4552615 20 1.70e-04 ACCCACTCAA TCGTTTCG AGACCCAACG chrV:11083128-11083208 52 1.70e-04 ttcagatggg tctcggcg tgcaaaaaag chrI:8425813-8425893 69 1.79e-04 CCGATTTTGA TCGTAGCG ACCT chrV:10969055-10969135 10 1.79e-04 caaaatatc tcgtagcg aaaactacag chrI:10634409-10634489 73 2.17e-04 TTACCATTTA TCTCCGCG chrV:9703716-9703796 34 2.17e-04 CGATTGGGTG TCGCCCCG CGAACTATTT chrV:16921699-16921779 22 2.17e-04 GTCCGCAAAT TCTCTGCG GAGTTTACGA chrIV:11298306-11298386 69 2.25e-04 TTTTTGGGTT TCGCAACG AGTT chrIV:7121489-7121569 46 2.40e-04 GTGAAACATT GCGTGACG GTGTTTGCAC chrV:185277-185357 46 2.58e-04 aaaaaaaatg tcgtgccg agaccggggc chrV:5666494-5666574 43 2.58e-04 ttccaatggg tcttggcg cgaacaaaaa chrIV:16401580-16401660 64 2.72e-04 TGTTTGCAGA CCGCCGCG CGGGAAAGT chrV:1701745-1701825 28 2.78e-04 GTGTCCGTGA GCGTGTCG ATACCACTCA chrIII:10083385-10083465 32 2.97e-04 aacttttttc tcgcggtg agaccaatcc chrI:10808364-10808444 43 2.97e-04 TCAATTAGAA TCGCGGTG AGACCCAGTG chrI:2980500-2980580 28 2.97e-04 CGGTACACAA TCGCGGTG AGACCCGAAA chrI:10235796-10235876 20 3.44e-04 GTGCATTTGT CCGTGGCG GTGTTTGCAC chrII:3546677-3546757 67 4.52e-04 TCTGATTTTT TCTCCACG AAAACA chrIII:9832717-9832797 58 4.52e-04 TCCACGTTGT TCTCCACG TGGACAAAAC chrV:8178436-8178516 69 4.52e-04 GATTTGGGTC TCTCCACG ATTG chrI:5573037-5573117 68 4.56e-04 ATCAAACATT TGGCGGCG CTTCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCGYBGCG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:18137849-18137929 3.6e-06 7_[+3]_65 chrIII:10330826-10330906 1.3e-05 50_[+3]_22 chrII:5906411-5906491 1.3e-05 30_[+3]_42 chrII:6860199-6860279 1.3e-05 38_[+3]_34 chrII:6597682-6597762 1.3e-05 29_[+3]_43 chrIII:8492111-8492191 1.3e-05 25_[+3]_47 chrIII:7893373-7893453 1.3e-05 49_[+3]_23 chrI:3817379-3817459 1.8e-05 31_[+3]_41 chrIII:11508984-11509064 1.8e-05 16_[+3]_56 chrIII:3471143-3471223 3.8e-05 24_[+3]_48 chrV:6268136-6268216 3.8e-05 54_[+3]_18 chrIII:13561408-13561488 3.8e-05 1_[+3]_71 chrII:4320608-4320688 3.8e-05 40_[+3]_32 chrII:3934242-3934322 3.8e-05 43_[+3]_29 chrIII:4932448-4932528 3.8e-05 48_[+3]_24 chrIV:10546761-10546841 3.8e-05 50_[+3]_22 chrI:4824585-4824665 3.8e-05 25_[+3]_47 chrIII:8831511-8831591 3.8e-05 8_[+3]_64 chrV:14090751-14090831 3.8e-05 13_[+3]_59 chrV:4195437-4195517 3.8e-05 47_[+3]_25 chrV:14597484-14597564 3.8e-05 24_[+3]_48 chrI:6063100-6063180 3.8e-05 19_[+3]_53 chrI:7588562-7588642 3.8e-05 38_[+3]_34 chrI:5411763-5411843 4.6e-05 15_[+3]_57 chrIV:13513200-13513280 4.6e-05 70_[+3]_2 chrII:14968427-14968507 4.6e-05 72_[+3] chrIV:11498338-11498418 4.6e-05 9_[+3]_63 chrI:9583553-9583633 6e-05 30_[+3]_42 chrI:9853452-9853532 6e-05 4_[+3]_68 chrV:16916839-16916919 6e-05 21_[+3]_51 chrIV:11022036-11022116 6e-05 4_[+3]_68 chrI:5563747-5563827 6e-05 58_[+3]_14 chrV:7064471-7064551 6e-05 38_[+3]_34 chrV:102324-102404 6e-05 54_[+3]_18 chrI:5511849-5511929 6e-05 56_[+3]_16 chrI:3870454-3870534 6e-05 52_[+3]_20 chrIII:13173845-13173925 6e-05 40_[+3]_32 chrII:11261335-11261415 6.6e-05 36_[+3]_36 chrI:8918864-8918944 6.6e-05 14_[+3]_58 chrI:8412612-8412692 6.6e-05 10_[+3]_62 chrV:16405517-16405597 6.6e-05 60_[+3]_12 chrI:2905770-2905850 8.8e-05 50_[+3]_22 chrI:12901961-12902041 8.8e-05 28_[+3]_44 chrIII:12353332-12353412 8.8e-05 71_[+3]_1 chrIII:5047911-5047991 9.4e-05 59_[+3]_13 chrIV:10285491-10285571 9.4e-05 22_[+3]_50 chrIII:4856262-4856342 9.4e-05 45_[+3]_27 chrV:11917332-11917412 9.7e-05 70_[+3]_2 chrIII:11974275-11974355 9.7e-05 56_[+3]_16 chrI:9985689-9985769 9.7e-05 33_[+3]_39 chrI:509593-509673 0.00011 69_[+3]_3 chrV:12286455-12286535 0.00011 17_[+3]_55 chrIII:5151680-5151760 0.00011 45_[+3]_27 chrIV:12804866-12804946 0.00011 72_[+3] chrIV:14786518-14786598 0.00011 52_[+3]_20 chrIV:4751984-4752064 0.00013 55_[+3]_17 chrI:9342747-9342827 0.00013 15_[+3]_57 chrIII:4891167-4891247 0.00014 3_[+3]_69 chrV:6450274-6450354 0.00014 39_[+3]_33 chrIV:11176905-11176985 0.00017 11_[+3]_61 chrI:3212690-3212770 0.00017 5_[+3]_67 chrIII:5701634-5701714 0.00017 6_[+3]_66 chrV:4552535-4552615 0.00017 19_[+3]_53 chrV:11083128-11083208 0.00017 51_[+3]_21 chrI:8425813-8425893 0.00018 68_[+3]_4 chrV:10969055-10969135 0.00018 9_[+3]_63 chrI:10634409-10634489 0.00022 72_[+3] chrV:9703716-9703796 0.00022 33_[+3]_39 chrV:16921699-16921779 0.00022 21_[+3]_51 chrIV:11298306-11298386 0.00023 68_[+3]_4 chrIV:7121489-7121569 0.00024 45_[+3]_27 chrV:185277-185357 0.00026 45_[+3]_27 chrV:5666494-5666574 0.00026 42_[+3]_30 chrIV:16401580-16401660 0.00027 63_[+3]_9 chrV:1701745-1701825 0.00028 27_[+3]_45 chrIII:10083385-10083465 0.0003 31_[+3]_41 chrI:10808364-10808444 0.0003 42_[+3]_30 chrI:2980500-2980580 0.0003 27_[+3]_45 chrI:10235796-10235876 0.00034 19_[+3]_53 chrII:3546677-3546757 0.00045 66_[+3]_6 chrIII:9832717-9832797 0.00045 57_[+3]_15 chrV:8178436-8178516 0.00045 68_[+3]_4 chrI:5573037-5573117 0.00046 67_[+3]_5 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCGYBGCG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TCGYBGCG width=8 seqs=83 chrV:18137849-18137929 ( 8) TCGCGGCG 1 chrIII:10330826-10330906 ( 51) TCGCCGCG 1 chrII:5906411-5906491 ( 31) TCGCTGCG 1 chrII:6860199-6860279 ( 39) TCGCTGCG 1 chrII:6597682-6597762 ( 30) TCGCCGCG 1 chrIII:8492111-8492191 ( 26) TCGCCGCG 1 chrIII:7893373-7893453 ( 50) TCGCTGCG 1 chrI:3817379-3817459 ( 32) TCGTGGCG 1 chrIII:11508984-11509064 ( 17) TCGTGGCG 1 chrIII:3471143-3471223 ( 25) TCGTTGCG 1 chrV:6268136-6268216 ( 55) TCGTCGCG 1 chrIII:13561408-13561488 ( 2) TCGCGACG 1 chrII:4320608-4320688 ( 41) TCGTTGCG 1 chrII:3934242-3934322 ( 44) TCGTTGCG 1 chrIII:4932448-4932528 ( 49) TCGTTGCG 1 chrIV:10546761-10546841 ( 51) TCGCGACG 1 chrI:4824585-4824665 ( 26) TCGCGACG 1 chrIII:8831511-8831591 ( 9) TCGTTGCG 1 chrV:14090751-14090831 ( 14) TCGTTGCG 1 chrV:4195437-4195517 ( 48) TCGTTGCG 1 chrV:14597484-14597564 ( 25) TCGTTGCG 1 chrI:6063100-6063180 ( 20) TCGTTGCG 1 chrI:7588562-7588642 ( 39) TCGTTGCG 1 chrI:5411763-5411843 ( 16) TCGCGTCG 1 chrIV:13513200-13513280 ( 71) TCGCGTCG 1 chrII:14968427-14968507 ( 73) TCGCGTCG 1 chrIV:11498338-11498418 ( 10) TCGCGTCG 1 chrI:9583553-9583633 ( 31) TCGCCACG 1 chrI:9853452-9853532 ( 5) TCGCCACG 1 chrV:16916839-16916919 ( 22) TCGCTACG 1 chrIV:11022036-11022116 ( 5) TCGCCACG 1 chrI:5563747-5563827 ( 59) TCGCCACG 1 chrV:7064471-7064551 ( 39) TCGCTACG 1 chrV:102324-102404 ( 55) TCGCTACG 1 chrI:5511849-5511929 ( 57) TCGCTACG 1 chrI:3870454-3870534 ( 53) TCGCTACG 1 chrIII:13173845-13173925 ( 41) TCGCCACG 1 chrII:11261335-11261415 ( 37) GCGCTGCG 1 chrI:8918864-8918944 ( 15) GCGCTGCG 1 chrI:8412612-8412692 ( 11) GCGCTGCG 1 chrV:16405517-16405597 ( 61) GCGCCGCG 1 chrI:2905770-2905850 ( 51) TCGCTTCG 1 chrI:12901961-12902041 ( 29) TCGCTTCG 1 chrIII:12353332-12353412 ( 72) TCGCTTCG 1 chrIII:5047911-5047991 ( 60) TCGCAGCG 1 chrIV:10285491-10285571 ( 23) TCGCAGCG 1 chrIII:4856262-4856342 ( 46) TCGCAGCG 1 chrV:11917332-11917412 ( 71) GCGTGGCG 1 chrIII:11974275-11974355 ( 57) GCGTGGCG 1 chrI:9985689-9985769 ( 34) GCGTGGCG 1 chrI:509593-509673 ( 70) TCGTGTCG 1 chrV:12286455-12286535 ( 18) TCGTGTCG 1 chrIII:5151680-5151760 ( 46) TCGTGTCG 1 chrIV:12804866-12804946 ( 73) TCGTGTCG 1 chrIV:14786518-14786598 ( 53) TCGTGTCG 1 chrIV:4751984-4752064 ( 56) TCGTCACG 1 chrI:9342747-9342827 ( 16) TCGTCACG 1 chrIII:4891167-4891247 ( 4) GCGTTGCG 1 chrV:6450274-6450354 ( 40) GCGTTGCG 1 chrIV:11176905-11176985 ( 12) TCGTTTCG 1 chrI:3212690-3212770 ( 6) TCGCGCCG 1 chrIII:5701634-5701714 ( 7) TCTCGGCG 1 chrV:4552535-4552615 ( 20) TCGTTTCG 1 chrV:11083128-11083208 ( 52) TCTCGGCG 1 chrI:8425813-8425893 ( 69) TCGTAGCG 1 chrV:10969055-10969135 ( 10) TCGTAGCG 1 chrI:10634409-10634489 ( 73) TCTCCGCG 1 chrV:9703716-9703796 ( 34) TCGCCCCG 1 chrV:16921699-16921779 ( 22) TCTCTGCG 1 chrIV:11298306-11298386 ( 69) TCGCAACG 1 chrIV:7121489-7121569 ( 46) GCGTGACG 1 chrV:185277-185357 ( 46) TCGTGCCG 1 chrV:5666494-5666574 ( 43) TCTTGGCG 1 chrIV:16401580-16401660 ( 64) CCGCCGCG 1 chrV:1701745-1701825 ( 28) GCGTGTCG 1 chrIII:10083385-10083465 ( 32) TCGCGGTG 1 chrI:10808364-10808444 ( 43) TCGCGGTG 1 chrI:2980500-2980580 ( 28) TCGCGGTG 1 chrI:10235796-10235876 ( 20) CCGTGGCG 1 chrII:3546677-3546757 ( 67) TCTCCACG 1 chrIII:9832717-9832797 ( 58) TCTCCACG 1 chrV:8178436-8178516 ( 69) TCTCCACG 1 chrI:5573037-5573117 ( 68) TGGCGGCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCGYBGCG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 7.25135 E= 5.2e-045 -1302 -303 -58 148 -1302 233 -404 -1302 -1302 -1302 219 -165 -1302 159 -1302 44 -206 14 86 21 -33 -244 145 -74 -1302 229 -1302 -306 -1302 -1302 233 -1302 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCGYBGCG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 83 E= 5.2e-045 0.000000 0.024096 0.132530 0.843373 0.000000 0.987952 0.012048 0.000000 0.000000 0.000000 0.903614 0.096386 0.000000 0.590361 0.000000 0.409639 0.072289 0.216867 0.361446 0.349398 0.240964 0.036145 0.542169 0.180723 0.000000 0.963855 0.000000 0.036145 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCGYBGCG MEME-3 regular expression -------------------------------------------------------------------------------- TCG[CT][GTC][GA]CG -------------------------------------------------------------------------------- Time 13.18 secs. ******************************************************************************** ******************************************************************************** MOTIF CTACAGTA MEME-4 width = 8 sites = 25 llr = 250 E-value = 2.0e-012 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTACAGTA MEME-4 Description -------------------------------------------------------------------------------- Simplified A :1a:8::a pos.-specific C a::a:::: probability G ::::1a:: matrix T :9::1:a: bits 2.3 * * * 2.1 * * * 1.9 * * * 1.6 * ** *** Relative 1.4 **** *** Entropy 1.2 **** *** (14.4 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CTACAGTA consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTACAGTA MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrII:3806079-3806159 26 1.95e-05 gtatcgaaaa ctacagta atcctttaaa chrI:11841749-11841829 44 1.95e-05 AACTTGATAG CTACAGTA CCCCCGAGTA chrII:8713733-8713813 11 1.95e-05 gtagcgaaac ctacagta attctttaaa chrII:11343150-11343230 35 1.95e-05 aagtttgaaa ctacagta ctacagtact chrV:7064471-7064551 6 1.95e-05 aagct ctacagta gtcattcaaa chrI:4142972-4143052 3 1.95e-05 aa ctacagta aatctttaaa chrV:102324-102404 22 1.95e-05 ggcaaaagca ctacagta gccatttaaa chrI:5511849-5511929 8 1.95e-05 AGTGTTT CTACAGTA TCCTATTTAA chrV:6510781-6510861 24 1.95e-05 TTTAGACACA CTACAGTA GAAGGCTACT chrIII:6283160-6283240 15 1.95e-05 aagtttgaaa ctacagta ctatttTTAC chrIII:12444530-12444610 1 1.95e-05 . ctacagta atcctttaaa chrII:11958969-11959049 6 1.95e-05 TTCAA CTACAGTA CCCTCGGGGT chrIV:5210777-5210857 43 1.95e-05 gacacaagcg ctacagta gtcatttaaa chrV:10969055-10969135 22 1.95e-05 gtagcgaaaa ctacagta attatttaaa chrII:13122658-13122738 34 1.95e-05 TCCTCAAAAA CTACAGTA GACGAACTAC chrIII:13505669-13505749 10 1.95e-05 tagcgaata ctacagta attctgtaaa chrIII:7893373-7893453 17 1.95e-05 gacaccagct ctacagta gtcattgaaa chrI:3870454-3870534 20 1.95e-05 gatacaagcg ctacagta gtcatttaaa chrII:12036225-12036305 11 3.24e-05 cgcgccaaaa ctacggta cctagggtct chrV:18081916-18081996 26 3.24e-05 TTGCGCCGTA CTACGGTA GACAGAACAC chrI:4185999-4186079 31 3.24e-05 TCTCTTGAGA CTACGGTA CACAATTGCG chrII:11690137-11690217 1 5.20e-05 . CTACTGTA TTTTTTTTCA chrIV:14786518-14786598 71 5.20e-05 agacctgcag ctactgta tt chrI:8637426-8637506 53 7.15e-05 ATTCAAGAGG CAACAGTA CCGGGTCCCA chrIV:12804866-12804946 32 7.15e-05 aagtttgaaa caacagta tcctttaaag -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTACAGTA MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:3806079-3806159 2e-05 25_[+4]_47 chrI:11841749-11841829 2e-05 43_[+4]_29 chrII:8713733-8713813 2e-05 10_[+4]_62 chrII:11343150-11343230 2e-05 34_[+4]_38 chrV:7064471-7064551 2e-05 5_[+4]_67 chrI:4142972-4143052 2e-05 2_[+4]_70 chrV:102324-102404 2e-05 21_[+4]_51 chrI:5511849-5511929 2e-05 7_[+4]_65 chrV:6510781-6510861 2e-05 23_[+4]_49 chrIII:6283160-6283240 2e-05 14_[+4]_58 chrIII:12444530-12444610 2e-05 [+4]_72 chrII:11958969-11959049 2e-05 5_[+4]_67 chrIV:5210777-5210857 2e-05 42_[+4]_30 chrV:10969055-10969135 2e-05 21_[+4]_51 chrII:13122658-13122738 2e-05 33_[+4]_39 chrIII:13505669-13505749 2e-05 9_[+4]_63 chrIII:7893373-7893453 2e-05 16_[+4]_56 chrI:3870454-3870534 2e-05 19_[+4]_53 chrII:12036225-12036305 3.2e-05 10_[+4]_62 chrV:18081916-18081996 3.2e-05 25_[+4]_47 chrI:4185999-4186079 3.2e-05 30_[+4]_42 chrII:11690137-11690217 5.2e-05 [+4]_72 chrIV:14786518-14786598 5.2e-05 70_[+4]_2 chrI:8637426-8637506 7.1e-05 52_[+4]_20 chrIV:12804866-12804946 7.1e-05 31_[+4]_41 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTACAGTA MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTACAGTA width=8 seqs=25 chrII:3806079-3806159 ( 26) CTACAGTA 1 chrI:11841749-11841829 ( 44) CTACAGTA 1 chrII:8713733-8713813 ( 11) CTACAGTA 1 chrII:11343150-11343230 ( 35) CTACAGTA 1 chrV:7064471-7064551 ( 6) CTACAGTA 1 chrI:4142972-4143052 ( 3) CTACAGTA 1 chrV:102324-102404 ( 22) CTACAGTA 1 chrI:5511849-5511929 ( 8) CTACAGTA 1 chrV:6510781-6510861 ( 24) CTACAGTA 1 chrIII:6283160-6283240 ( 15) CTACAGTA 1 chrIII:12444530-12444610 ( 1) CTACAGTA 1 chrII:11958969-11959049 ( 6) CTACAGTA 1 chrIV:5210777-5210857 ( 43) CTACAGTA 1 chrV:10969055-10969135 ( 22) CTACAGTA 1 chrII:13122658-13122738 ( 34) CTACAGTA 1 chrIII:13505669-13505749 ( 10) CTACAGTA 1 chrIII:7893373-7893453 ( 17) CTACAGTA 1 chrI:3870454-3870534 ( 20) CTACAGTA 1 chrII:12036225-12036305 ( 11) CTACGGTA 1 chrV:18081916-18081996 ( 26) CTACGGTA 1 chrI:4185999-4186079 ( 31) CTACGGTA 1 chrII:11690137-11690217 ( 1) CTACTGTA 1 chrIV:14786518-14786598 ( 71) CTACTGTA 1 chrI:8637426-8637506 ( 53) CAACAGTA 1 chrIV:12804866-12804946 ( 32) CAACAGTA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTACAGTA MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.0004 E= 2.0e-012 -1129 235 -1129 -1129 -192 -1129 -1129 160 173 -1129 -1129 -1129 -1129 235 -1129 -1129 140 -1129 -73 -192 -1129 -1129 233 -1129 -1129 -1129 -1129 172 173 -1129 -1129 -1129 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTACAGTA MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 25 E= 2.0e-012 0.000000 1.000000 0.000000 0.000000 0.080000 0.000000 0.000000 0.920000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.800000 0.000000 0.120000 0.080000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTACAGTA MEME-4 regular expression -------------------------------------------------------------------------------- CTACAGTA -------------------------------------------------------------------------------- Time 16.09 secs. ******************************************************************************** ******************************************************************************** MOTIF GTACGCAA MEME-5 width = 8 sites = 24 llr = 231 E-value = 2.1e-007 ******************************************************************************** -------------------------------------------------------------------------------- Motif GTACGCAA MEME-5 Description -------------------------------------------------------------------------------- Simplified A 1:9:::a6 pos.-specific C ::1a:a:: probability G 9:::a::3 matrix T :a:::::1 bits 2.3 *** 2.1 *** 1.9 *** 1.6 ** *** Relative 1.4 ** **** Entropy 1.2 ******* (13.9 bits) 0.9 ******* 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GTACGCAA consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTACGCAA MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrV:13560201-13560281 11 1.28e-05 cggtaaaaaa gtacgcaa acaccaaacg chrI:12907868-12907948 63 1.28e-05 AGTTCTCAAT GTACGCAA GTTGCGCACA chrII:13758101-13758181 64 1.28e-05 TCCTTCTCAA GTACGCAA ACACCACAT chrIII:1423656-1423736 56 1.28e-05 agttctaaaa gtacgcaa acacttggcg chrV:17658993-17659073 6 1.28e-05 GCCAA GTACGCAA GTGTGCCCCG chrIII:9473532-9473612 36 1.28e-05 GTAAGGAGTC GTACGCAA ACACGTAGCG chrV:17656740-17656820 39 1.28e-05 AGTCTGTCGT GTACGCAA TGACAAGTGT chrV:18125480-18125560 42 1.28e-05 AGACGGCAGA GTACGCAA TGGCAAGTGT chrV:17658312-17658392 13 1.28e-05 AAAATGCCGA GTACGCAA ACACTAGTCA chrIV:14755079-14755159 23 2.13e-05 TAAATGCCAG GTACGCAG TTGTGTATTG chrII:12133089-12133169 46 2.13e-05 AGATGGCGGA GTACGCAG AGGTTTTTGC chrIII:9832717-9832797 19 2.13e-05 ATGGTGTATT GTACGCAG AGTTCTTCGA chrIV:8174424-8174504 40 2.13e-05 AGTGTTTGTT GTACGCAG ATGCATTAAA chrII:3345078-3345158 23 2.13e-05 TAAATGCCAG GTACGCAG TTGTGTATTG chrV:14698164-14698244 72 2.13e-05 AGATTGCGAA GTACGCAG A chrII:3449931-3450011 20 2.96e-05 GAAGCGCAAA GTCCGCAA ACACGTTGCG chrII:3452513-3452593 20 2.96e-05 CAGGTGCATA GTCCGCAA ACACGTTACG chrV:16921699-16921779 12 2.96e-05 AGAGGGTGCG GTCCGCAA ATTCTCTGCG chrII:3808814-3808894 36 4.80e-05 AAAATGCAAA GTACGCAT TTAATTTTTA chrII:6923959-6924039 48 4.80e-05 GTGGTGCCCC GTACGCAT TCTGTGCAAT chrI:10750652-10750732 16 6.75e-05 ATGGCGCCGC ATACGCAA ACACCTTGCA chrV:18134569-18134649 40 6.75e-05 AGATTTCGAA ATACGCAA GGTGGTTGCG chrIII:1427378-1427458 66 8.03e-05 AGTTTTCAAA ATACGCAG TACACCA chrIII:4551626-4551706 43 8.88e-05 GACGAGGCAA GTACGCGA ACACCGTCAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTACGCAA MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:13560201-13560281 1.3e-05 10_[+5]_62 chrI:12907868-12907948 1.3e-05 62_[+5]_10 chrII:13758101-13758181 1.3e-05 63_[+5]_9 chrIII:1423656-1423736 1.3e-05 55_[+5]_17 chrV:17658993-17659073 1.3e-05 5_[+5]_67 chrIII:9473532-9473612 1.3e-05 35_[+5]_37 chrV:17656740-17656820 1.3e-05 38_[+5]_34 chrV:18125480-18125560 1.3e-05 41_[+5]_31 chrV:17658312-17658392 1.3e-05 12_[+5]_60 chrIV:14755079-14755159 2.1e-05 22_[+5]_50 chrII:12133089-12133169 2.1e-05 45_[+5]_27 chrIII:9832717-9832797 2.1e-05 18_[+5]_54 chrIV:8174424-8174504 2.1e-05 39_[+5]_33 chrII:3345078-3345158 2.1e-05 22_[+5]_50 chrV:14698164-14698244 2.1e-05 71_[+5]_1 chrII:3449931-3450011 3e-05 19_[+5]_53 chrII:3452513-3452593 3e-05 19_[+5]_53 chrV:16921699-16921779 3e-05 11_[+5]_61 chrII:3808814-3808894 4.8e-05 35_[+5]_37 chrII:6923959-6924039 4.8e-05 47_[+5]_25 chrI:10750652-10750732 6.7e-05 15_[+5]_57 chrV:18134569-18134649 6.7e-05 39_[+5]_33 chrIII:1427378-1427458 8e-05 65_[+5]_7 chrIII:4551626-4551706 8.9e-05 42_[+5]_30 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTACGCAA MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GTACGCAA width=8 seqs=24 chrV:13560201-13560281 ( 11) GTACGCAA 1 chrI:12907868-12907948 ( 63) GTACGCAA 1 chrII:13758101-13758181 ( 64) GTACGCAA 1 chrIII:1423656-1423736 ( 56) GTACGCAA 1 chrV:17658993-17659073 ( 6) GTACGCAA 1 chrIII:9473532-9473612 ( 36) GTACGCAA 1 chrV:17656740-17656820 ( 39) GTACGCAA 1 chrV:18125480-18125560 ( 42) GTACGCAA 1 chrV:17658312-17658392 ( 13) GTACGCAA 1 chrIV:14755079-14755159 ( 23) GTACGCAG 1 chrII:12133089-12133169 ( 46) GTACGCAG 1 chrIII:9832717-9832797 ( 19) GTACGCAG 1 chrIV:8174424-8174504 ( 40) GTACGCAG 1 chrII:3345078-3345158 ( 23) GTACGCAG 1 chrV:14698164-14698244 ( 72) GTACGCAG 1 chrII:3449931-3450011 ( 20) GTCCGCAA 1 chrII:3452513-3452593 ( 20) GTCCGCAA 1 chrV:16921699-16921779 ( 12) GTCCGCAA 1 chrII:3808814-3808894 ( 36) GTACGCAT 1 chrII:6923959-6924039 ( 48) GTACGCAT 1 chrI:10750652-10750732 ( 16) ATACGCAA 1 chrV:18134569-18134649 ( 40) ATACGCAA 1 chrIII:1427378-1427458 ( 66) ATACGCAG 1 chrIII:4551626-4551706 ( 43) GTACGCGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTACGCAA MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.0167 E= 2.1e-007 -127 -1123 214 -1123 -1123 -1123 -1123 172 153 -65 -1123 -1123 -1123 235 -1123 -1123 -1123 -1123 233 -1123 -1123 235 -1123 -1123 166 -1123 -225 -1123 105 -1123 55 -186 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTACGCAA MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 24 E= 2.1e-007 0.125000 0.000000 0.875000 0.000000 0.000000 0.000000 0.000000 1.000000 0.875000 0.125000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.958333 0.000000 0.041667 0.000000 0.625000 0.000000 0.291667 0.083333 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTACGCAA MEME-5 regular expression -------------------------------------------------------------------------------- GTACGCA[AG] -------------------------------------------------------------------------------- Time 18.97 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:4895798-4895878 9.97e-01 80 chrIII:13173845-13173925 7.76e-03 40_[+3(5.97e-05)]_32 chrII:14311111-14311191 9.48e-01 80 chrI:3870454-3870534 9.78e-06 19_[+4(1.95e-05)]_14_[+1(4.57e-05)]_\ 3_[+3(5.97e-05)]_20 chrV:17985990-17986070 3.35e-04 16_[+1(2.59e-05)]_56 chrII:3350044-3350124 5.82e-06 3_[+1(1.29e-05)]_61_[+1(1.29e-05)] chrII:4523403-4523483 1.63e-01 60_[+2(3.52e-05)]_12 chrII:9974777-9974857 6.24e-03 80 chrIII:7893373-7893453 6.86e-07 16_[+4(1.95e-05)]_14_[+1(4.57e-05)]_\ 3_[+3(1.28e-05)]_23 chrII:1922848-1922928 5.57e-04 50_[+1(1.29e-05)]_22 chrI:4185999-4186079 4.87e-05 30_[+4(3.24e-05)]_16_[+1(4.57e-05)]_\ 18 chrV:18134569-18134649 1.93e-05 23_[+1(4.57e-05)]_8_[+5(6.75e-05)]_\ 33 chrII:2032122-2032202 5.57e-04 50_[+1(1.29e-05)]_22 chrI:3684148-3684228 2.87e-01 80 chrV:16405517-16405597 2.24e-05 37_[+1(4.57e-05)]_15_[+3(6.57e-05)]_\ 12 chrV:10436815-10436895 1.10e-02 80 chrI:7504113-7504193 9.73e-01 80 chrV:6782395-6782475 8.49e-01 80 chrI:2307213-2307293 3.83e-02 80 chrI:9985689-9985769 6.42e-03 33_[+3(9.72e-05)]_6_[+2(9.34e-05)]_\ 25 chrII:5188114-5188194 3.95e-02 80 chrV:17658312-17658392 1.81e-06 12_[+5(1.28e-05)]_26_[+4(1.95e-05)]_\ 26 chrIII:13505669-13505749 6.52e-04 9_[+4(1.95e-05)]_14_[+1(4.57e-05)]_\ 41 chrII:13122658-13122738 3.51e-05 33_[+4(1.95e-05)]_7_[+1(2.59e-05)]_\ 24 chrIII:8793479-8793559 1.58e-03 20_[+1(4.57e-05)]_52 chrV:15867434-15867514 2.53e-04 9_[+1(2.59e-05)]_63 chrV:10969055-10969135 2.06e-04 21_[+4(1.95e-05)]_14_[+1(4.57e-05)]_\ 29 chrV:18081916-18081996 6.33e-05 26_[+1(2.59e-05)]_34_[+1(1.29e-05)]_\ 4 chrV:16921699-16921779 5.75e-06 11_[+5(2.96e-05)]_22_[+1(7.81e-05)]_\ 31 chrV:11083128-11083208 2.40e-03 26_[+2(3.52e-05)]_46 chrI:7588562-7588642 2.84e-05 30_[+1(2.59e-05)]_[+3(3.79e-05)]_34 chrV:15060738-15060818 7.09e-04 8_[+1(7.81e-05)]_64 chrIII:3127317-3127397 1.00e+00 80 chrV:4552535-4552615 1.06e-03 80 chrV:18125480-18125560 4.36e-06 25_[+1(2.59e-05)]_8_[+5(1.28e-05)]_\ 31 chrI:13368280-13368360 6.84e-01 80 chrIII:7853689-7853769 9.32e-04 66_[+2(1.39e-05)]_6 chrIV:14786518-14786598 1.08e-05 2_[+4(1.95e-05)]_60_[+4(5.20e-05)]_\ 2 chrIII:11974275-11974355 9.38e-06 30_[+1(2.59e-05)]_18_[+3(9.72e-05)]_\ 16 chrV:8521202-8521282 5.63e-02 80 chrIV:11124822-11124902 3.51e-01 80 chrIV:5210777-5210857 1.85e-03 42_[+4(1.95e-05)]_14_[+1(4.57e-05)]_\ 8 chrIII:4551626-4551706 2.12e-05 25_[+1(2.59e-05)]_9_[+5(8.88e-05)]_\ 30 chrI:6063100-6063180 3.81e-05 19_[+3(3.79e-05)]_16_[+1(2.59e-05)]_\ 29 chrI:4703852-4703932 9.89e-01 80 chrI:14711549-14711629 2.94e-01 80 chrII:11958969-11959049 7.48e-04 5_[+4(1.95e-05)]_9_[+1(2.59e-05)]_\ 50 chrIII:8128947-8129027 1.93e-03 46_[+4(1.95e-05)]_26 chrIV:1708078-1708158 6.12e-02 80 chrIII:10351046-10351126 9.99e-01 80 chrV:14597484-14597564 2.48e-03 24_[+3(3.79e-05)]_48 chrIII:4987810-4987890 6.89e-03 80 chrIII:12444530-12444610 9.43e-04 [+4(1.95e-05)]_14_[+1(4.57e-05)]_50 chrV:17656740-17656820 5.51e-05 22_[+1(6.54e-05)]_8_[+5(1.28e-05)]_\ 34 chrIII:11508984-11509064 2.15e-05 16_[+3(1.83e-05)]_16_[+1(4.57e-05)]_\ 32 chrV:14698164-14698244 1.60e-06 55_[+1(2.59e-05)]_8_[+5(2.13e-05)]_\ 1 chrII:1926110-1926190 7.20e-05 36_[+2(3.52e-05)]_25_[+1(1.29e-05)]_\ 3 chrI:6758746-6758826 4.15e-03 8_[+4(1.95e-05)]_64 chrIV:2893597-2893677 9.02e-05 13_[+2(3.52e-05)]_40_[+1(2.59e-05)]_\ 11 chrIII:9106245-9106325 7.56e-01 80 chrV:18131232-18131312 1.52e-07 16_[+5(1.28e-05)]_22_[+4(1.95e-05)]_\ 26 chrII:3345078-3345158 3.48e-06 22_[+5(2.13e-05)]_24_[+1(1.29e-05)]_\ 18 chrII:3452513-3452593 3.12e-05 19_[+5(2.96e-05)]_53 chrV:4195437-4195517 1.97e-01 47_[+3(3.79e-05)]_25 chrII:3448939-3449019 2.91e-05 52_[+1(1.29e-05)]_20 chrV:18137849-18137929 5.18e-05 7_[+3(3.63e-06)]_65 chrIV:12804866-12804946 6.60e-05 31_[+4(7.15e-05)]_8_[+2(1.39e-05)]_\ 25 chrII:7690549-7690629 3.68e-02 80 chrIV:12454435-12454515 2.08e-05 44_[+4(1.95e-05)]_7_[+2(1.39e-05)]_\ 13 chrI:8412612-8412692 1.44e-04 10_[+3(6.57e-05)]_62 chrII:3445496-3445576 1.94e-05 62_[+1(1.29e-05)]_10 chrV:7803720-7803800 9.91e-03 20_[+2(3.52e-05)]_52 chrIII:6283160-6283240 4.21e-04 14_[+4(1.95e-05)]_34_[+1(4.57e-05)]_\ 16 chrI:10398234-10398314 6.81e-01 80 chrII:6923959-6924039 5.37e-03 47_[+5(4.80e-05)]_25 chrV:687340-687420 2.19e-03 57_[+1(1.29e-05)]_15 chrIV:11498338-11498418 5.09e-06 9_[+3(4.58e-05)]_42_[+4(3.24e-05)]_\ 13 chrII:8593988-8594068 2.10e-04 55_[+2(7.20e-05)]_7_[+1(4.57e-05)]_\ 2 chrIV:13356893-13356973 9.31e-03 4_[+1(4.57e-05)]_68 chrV:14090751-14090831 3.63e-03 13_[+3(3.79e-05)]_23_[+2(7.20e-05)]_\ 28 chrIII:9473532-9473612 2.32e-04 35_[+5(1.28e-05)]_37 chrI:7218195-7218275 3.22e-05 69_[+1(1.29e-05)]_3 chrIII:12353332-12353412 7.65e-07 21_[+4(1.95e-05)]_8_[+2(1.39e-05)]_\ 26_[+3(8.80e-05)]_1 chrIII:8831511-8831591 2.16e-04 8_[+3(3.79e-05)]_64 chrIII:9488189-9488269 1.94e-02 80 chrV:17658993-17659073 3.21e-06 5_[+5(1.28e-05)]_29_[+4(1.95e-05)]_\ 30 chrV:6510781-6510861 9.45e-04 23_[+4(1.95e-05)]_6_[+1(4.57e-05)]_\ 35 chrI:12901961-12902041 3.09e-03 28_[+3(8.80e-05)]_44 chrIII:4856262-4856342 1.44e-04 45_[+3(9.36e-05)]_16_[+1(4.57e-05)]_\ 3 chrIII:1423656-1423736 2.72e-06 39_[+1(4.57e-05)]_8_[+5(1.28e-05)]_\ 17 chrI:5511849-5511929 1.70e-06 7_[+4(1.95e-05)]_10_[+2(3.52e-05)]_\ 23_[+3(5.97e-05)]_16 chrI:10235796-10235876 1.98e-05 48_[+1(1.29e-05)]_24 chrI:4824585-4824665 5.13e-05 14_[+1(4.57e-05)]_3_[+3(3.79e-05)]_\ 47 chrV:11845661-11845741 3.37e-02 80 chrIV:10285491-10285571 1.54e-03 5_[+1(4.57e-05)]_9_[+3(9.36e-05)]_\ 50 chrII:14813279-14813359 6.49e-03 80 chrIII:5543867-5543947 9.91e-01 80 chrIV:4046741-4046821 4.73e-03 27_[+4(1.95e-05)]_45 chrIII:8492111-8492191 1.64e-02 25_[+3(1.28e-05)]_47 chrII:2059430-2059510 9.83e-01 80 chrII:13758101-13758181 2.91e-07 27_[+4(1.95e-05)]_8_[+2(1.39e-05)]_\ 12_[+5(1.28e-05)]_9 chrV:102324-102404 8.09e-07 21_[+4(1.95e-05)]_14_[+1(4.57e-05)]_\ 3_[+3(5.97e-05)]_18 chrI:8918864-8918944 1.69e-06 14_[+3(6.57e-05)]_34_[+4(1.95e-05)]_\ 16 chrII:14968427-14968507 5.66e-07 30_[+4(1.95e-05)]_8_[+2(1.39e-05)]_\ 18_[+3(4.58e-05)] chrIV:8205801-8205881 7.08e-04 30_[+2(7.20e-05)]_7_[+1(2.59e-05)]_\ 27 chrII:9842287-9842367 3.41e-03 49_[+1(4.57e-05)]_23 chrI:2980500-2980580 2.32e-05 15_[+1(9.10e-05)]_57 chrI:12907868-12907948 1.04e-07 46_[+1(2.59e-05)]_8_[+5(1.28e-05)]_\ 1_[+2(7.20e-05)]_1 chrV:4736060-4736140 5.54e-01 80 chrI:9658051-9658131 1.85e-03 57_[+1(2.59e-05)]_15 chrI:6089457-6089537 3.13e-03 15_[+2(3.52e-05)]_57 chrII:3342151-3342231 7.19e-02 80 chrI:6340799-6340879 1.05e-04 50_[+2(1.39e-05)]_22 chrIII:8080482-8080562 7.33e-01 80 chrI:398507-398587 2.15e-03 80 chrI:4142972-4143052 1.24e-03 2_[+4(1.95e-05)]_14_[+1(4.57e-05)]_\ 48 chrI:1445871-1445951 9.42e-01 80 chrII:3451169-3451249 8.91e-05 52_[+1(1.29e-05)]_20 chrIV:2223266-2223346 3.75e-05 [+2(7.20e-05)]_47_[+2(7.20e-05)]_6_\ [+4(3.24e-05)]_3 chrIV:13513200-13513280 1.43e-06 17_[+1(6.54e-05)]_11_[+2(1.39e-05)]_\ 26_[+3(4.58e-05)]_2 chrV:9703716-9703796 1.72e-02 59_[+2(7.20e-05)]_13 chrV:1701745-1701825 3.28e-03 1_[+2(1.39e-05)]_71 chrIII:5215693-5215773 3.55e-02 80 chrV:16789207-16789287 6.44e-04 12_[+1(2.59e-05)]_60 chrV:6450274-6450354 3.38e-03 80 chrIII:2782017-2782097 7.51e-01 80 chrI:10808364-10808444 6.60e-05 23_[+4(1.95e-05)]_49 chrIV:10546761-10546841 1.41e-06 23_[+2(3.52e-05)]_19_[+3(3.79e-05)]_\ 22 chrIII:10083385-10083465 7.31e-03 80 chrI:8425813-8425893 3.36e-04 80 chrV:7064471-7064551 1.03e-06 5_[+4(1.95e-05)]_14_[+1(4.57e-05)]_\ 3_[+3(5.97e-05)]_7_[+2(9.34e-05)]_19 chrIV:10357350-10357430 1.16e-02 80 chrIII:2101448-2101528 9.71e-01 80 chrV:19126761-19126841 8.02e-04 10_[+2(7.20e-05)]_62 chrI:5563747-5563827 6.95e-03 28_[+2(3.52e-05)]_22_[+3(5.97e-05)]_\ 14 chrII:3449931-3450011 1.75e-06 19_[+5(2.96e-05)]_22_[+1(1.29e-05)]_\ 23 chrV:13560201-13560281 6.81e-04 10_[+5(1.28e-05)]_31_[+1(7.81e-05)]_\ 23 chrV:15066039-15066119 7.20e-01 80 chrIV:9734052-9734132 2.76e-02 26_[+1(4.57e-05)]_46 chrI:5411763-5411843 8.29e-04 15_[+3(4.58e-05)]_57 chrIII:4932448-4932528 3.62e-06 24_[+2(3.52e-05)]_16_[+3(3.79e-05)]_\ 13_[+1(1.29e-05)]_3 chrII:3934242-3934322 6.65e-02 43_[+3(3.79e-05)]_29 chrIV:7121489-7121569 1.35e-01 80 chrII:4566384-4566464 6.19e-04 35_[+1(1.29e-05)]_7_[+2(3.52e-05)]_\ 22 chrV:5661145-5661225 1.59e-03 80 chrI:9127822-9127902 3.17e-01 80 chrIV:4743753-4743833 1.05e-05 40_[+2(1.39e-05)]_32 chrIV:13880506-13880586 7.74e-02 80 chrII:10953366-10953446 1.53e-03 48_[+1(4.57e-05)]_24 chrIII:3534326-3534406 1.52e-03 19_[+1(7.81e-05)]_11_[+2(3.52e-05)]_\ 34 chrII:9274609-9274689 2.56e-02 80 chrV:5666494-5666574 2.58e-03 17_[+2(1.39e-05)]_55 chrIV:6419301-6419381 9.51e-01 80 chrIII:5151680-5151760 3.34e-05 11_[+2(1.39e-05)]_61 chrV:8178436-8178516 1.78e-04 41_[+2(3.52e-05)]_31 chrI:318360-318440 2.82e-01 80 chrIII:9862624-9862704 9.22e-04 51_[+1(7.81e-05)]_21 chrII:2045788-2045868 8.76e-04 35_[+1(1.29e-05)]_37 chrV:185277-185357 1.19e-02 8_[+2(1.39e-05)]_64 chrIII:4891167-4891247 2.70e-03 80 chrII:6597682-6597762 5.15e-03 29_[+3(1.28e-05)]_43 chrII:6860199-6860279 6.89e-06 15_[+1(7.81e-05)]_15_[+3(1.28e-05)]_\ 34 chrIII:13715072-13715152 8.74e-01 80 chrIV:8174424-8174504 6.59e-05 23_[+1(4.57e-05)]_8_[+5(2.13e-05)]_\ 33 chrIV:1420733-1420813 8.18e-01 80 chrII:3808814-3808894 6.32e-03 35_[+5(4.80e-05)]_14_[+2(7.20e-05)]_\ 15 chrIII:9832717-9832797 6.72e-04 18_[+5(2.13e-05)]_54 chrIV:11022036-11022116 5.31e-05 4_[+3(5.97e-05)]_43_[+1(4.57e-05)]_\ 17 chrII:11650198-11650278 5.05e-01 80 chrII:4320608-4320688 9.45e-02 40_[+3(3.79e-05)]_32 chrIII:1427378-1427458 1.08e-04 49_[+1(2.59e-05)]_8_[+5(8.03e-05)]_\ 7 chrII:12036225-12036305 4.98e-05 10_[+4(3.24e-05)]_54_[+1(4.57e-05)] chrI:2905770-2905850 6.90e-06 26_[+2(1.39e-05)]_16_[+3(8.80e-05)]_\ 22 chrII:4888612-4888692 5.21e-01 80 chrIV:11298306-11298386 2.02e-03 22_[+1(9.10e-05)]_50 chrI:11612634-11612714 7.68e-03 67_[+4(1.95e-05)]_5 chrII:11343150-11343230 3.77e-05 34_[+4(1.95e-05)]_[+4(1.95e-05)]_8_\ [+2(1.39e-05)]_14 chrIV:13107052-13107132 1.11e-03 10_[+1(4.57e-05)]_62 chrII:5906411-5906491 2.44e-04 14_[+1(1.29e-05)]_8_[+3(1.28e-05)]_\ 42 chrI:9544482-9544562 6.97e-01 80 chrIV:16401580-16401660 6.55e-05 34_[+4(3.24e-05)]_38 chrII:2815180-2815260 2.38e-05 51_[+4(1.95e-05)]_21 chrII:12133089-12133169 1.43e-06 29_[+1(2.59e-05)]_8_[+5(2.13e-05)]_\ 27 chrIII:2134084-2134164 8.26e-05 13_[+1(4.57e-05)]_59 chrIII:13561408-13561488 2.21e-05 1_[+3(3.79e-05)]_24_[+2(7.20e-05)]_\ 8_[+1(4.57e-05)]_23 chrI:6858306-6858386 4.94e-04 33_[+1(2.59e-05)]_39 chrIII:7377248-7377328 2.32e-04 4_[+1(4.57e-05)]_68 chrIV:183697-183777 7.71e-04 10_[+4(5.20e-05)]_62 chrIII:9566135-9566215 2.03e-05 2_[+1(4.57e-05)]_37_[+2(7.20e-05)]_\ 25 chrV:13593770-13593850 1.15e-02 59_[+4(5.20e-05)]_13 chrII:11536639-11536719 1.18e-03 30_[+2(1.39e-05)]_42 chrIV:7954158-7954238 9.63e-01 80 chrI:2586768-2586848 9.42e-02 80 chrI:7984813-7984893 3.76e-02 80 chrI:9518926-9519006 1.44e-02 63_[+1(7.81e-05)]_9 chrII:11261335-11261415 4.88e-03 36_[+3(6.57e-05)]_36 chrV:16916839-16916919 1.24e-04 10_[+1(4.57e-05)]_3_[+3(5.97e-05)]_\ 32_[+1(1.29e-05)]_11 chrV:11483756-11483836 2.08e-03 12_[+2(7.20e-05)]_60 chrV:12286455-12286535 1.68e-04 6_[+1(4.57e-05)]_66 chrIII:5701634-5701714 1.01e-04 80 chrII:12945860-12945940 2.83e-03 66_[+2(3.52e-05)]_6 chrI:10588075-10588155 4.83e-04 44_[+2(1.39e-05)]_28 chrI:10750652-10750732 3.85e-05 15_[+5(6.75e-05)]_57 chrIV:8133097-8133177 3.86e-02 80 chrII:1916511-1916591 2.02e-04 51_[+1(1.29e-05)]_21 chrI:3212690-3212770 2.86e-02 35_[+2(7.20e-05)]_37 chrIII:5963082-5963162 7.55e-03 80 chrV:11917332-11917412 6.67e-07 23_[+4(1.95e-05)]_7_[+2(1.39e-05)]_\ 24_[+3(9.72e-05)]_2 chrI:4653268-4653348 1.87e-06 35_[+2(7.20e-05)]_7_[+4(1.95e-05)]_\ 22 chrI:8637426-8637506 4.19e-02 52_[+4(7.15e-05)]_20 chrIV:13251517-13251597 1.26e-01 80 chrI:10634409-10634489 5.89e-04 39_[+1(2.59e-05)]_33 chrI:9342747-9342827 4.13e-05 47_[+2(7.20e-05)]_8_[+1(9.10e-05)]_\ 9 chrIV:4751984-4752064 2.19e-03 80 chrI:7352197-7352277 3.62e-04 18_[+1(7.81e-05)]_54 chrI:3817379-3817459 6.64e-03 31_[+3(1.83e-05)]_18_[+2(7.20e-05)]_\ 15 chrII:6091457-6091537 1.23e-04 80 chrIII:7776177-7776257 1.03e-04 29_[+1(1.29e-05)]_43 chrV:6268136-6268216 1.79e-06 9_[+4(1.95e-05)]_37_[+3(3.79e-05)]_\ 18 chrII:11680365-11680445 1.46e-03 52_[+1(4.57e-05)]_20 chrII:8713733-8713813 1.38e-03 10_[+4(1.95e-05)]_14_[+1(2.59e-05)]_\ 40 chrV:17983634-17983714 1.88e-05 63_[+1(7.81e-05)]_9 chrII:4460484-4460564 1.03e-01 [+1(2.59e-05)]_72 chrIII:5047911-5047991 2.84e-02 59_[+3(9.36e-05)]_13 chrI:5573037-5573117 3.51e-02 80 chrII:3546677-3546757 6.55e-02 80 chrI:9853452-9853532 3.41e-04 4_[+3(5.97e-05)]_68 chrI:11841749-11841829 4.80e-03 43_[+4(1.95e-05)]_8_[+1(4.57e-05)]_\ 13 chrIV:14828374-14828454 3.95e-03 61_[+1(7.81e-05)]_11 chrI:9901106-9901186 4.41e-01 80 chrIII:10330826-10330906 3.83e-06 20_[+2(3.52e-05)]_22_[+3(1.28e-05)]_\ 6_[+1(4.57e-05)]_8 chrI:7527624-7527704 9.09e-01 80 chrI:9583553-9583633 5.40e-04 30_[+3(5.97e-05)]_42 chrIV:14755079-14755159 2.85e-06 22_[+5(2.13e-05)]_24_[+1(1.29e-05)]_\ 18 chrIV:12127230-12127310 4.16e-03 5_[+4(1.95e-05)]_67 chrII:13697030-13697110 9.41e-06 45_[+4(1.95e-05)]_16_[+2(1.39e-05)]_\ 3 chrII:3806079-3806159 2.96e-04 25_[+4(1.95e-05)]_14_[+1(4.57e-05)]_\ 25 chrIII:3471143-3471223 5.32e-02 24_[+3(3.79e-05)]_48 chrI:10798382-10798462 4.28e-04 71_[+1(2.59e-05)]_1 chrIV:10558400-10558480 6.71e-03 80 chrIII:10730678-10730758 2.27e-02 80 chrII:11974197-11974277 8.65e-03 80 chrIV:11176905-11176985 3.16e-01 80 chrII:14276569-14276649 7.05e-01 80 chrI:509593-509673 3.57e-07 11_[+4(1.95e-05)]_8_[+2(1.39e-05)]_\ 45 chrII:11690137-11690217 7.01e-04 [+4(5.20e-05)]_72 chrII:4474171-4474251 5.82e-04 5_[+2(7.20e-05)]_12_[+1(4.57e-05)]_\ 47 chrV:16747135-16747215 9.86e-01 80 chrIV:4514316-4514396 7.90e-04 66_[+1(4.57e-05)]_6 chrIII:8105241-8105321 1.11e-03 80 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n07.farnam.hpc.yale.internal ********************************************************************************