******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/worm/fasta/RankLinear2.0_40/lir-3.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrIII:10225213-10225293 1.0000 80 chrI:2571226-2571306 1.0000 80 chrIV:8975082-8975162 1.0000 80 chrII:2991859-2991939 1.0000 80 chrIV:13487168-13487248 1.0000 80 chrIV:5188196-5188276 1.0000 80 chrV:4730247-4730327 1.0000 80 chrV:10441259-10441339 1.0000 80 chrV:1060400-1060480 1.0000 80 chrII:2992472-2992552 1.0000 80 chrIV:8019949-8020029 1.0000 80 chrIII:4862110-4862190 1.0000 80 chrIII:5190327-5190407 1.0000 80 chrX:2857610-2857690 1.0000 80 chrIII:7858663-7858743 1.0000 80 chrIV:11592970-11593050 1.0000 80 chrIV:9797518-9797598 1.0000 80 chrIII:13439572-13439652 1.0000 80 chrIII:3857113-3857193 1.0000 80 chrX:6741177-6741257 1.0000 80 chrIII:13474648-13474728 1.0000 80 chrII:7211445-7211525 1.0000 80 chrV:19488318-19488398 1.0000 80 chrV:13409234-13409314 1.0000 80 chrX:3108719-3108799 1.0000 80 chrV:4694829-4694909 1.0000 80 chrX:6741670-6741750 1.0000 80 chrIV:9777707-9777787 1.0000 80 chrIV:11636471-11636551 1.0000 80 chrIII:13064387-13064467 1.0000 80 chrII:10714386-10714466 1.0000 80 chrV:9097310-9097390 1.0000 80 chrI:5118930-5119010 1.0000 80 chrIV:13783691-13783771 1.0000 80 chrX:15600174-15600254 1.0000 80 chrI:4792577-4792657 1.0000 80 chrII:15212664-15212744 1.0000 80 chrI:4215784-4215864 1.0000 80 chrII:5819827-5819907 1.0000 80 chrII:14563968-14564048 1.0000 80 chrIII:4283276-4283356 1.0000 80 chrV:12635374-12635454 1.0000 80 chrII:6197060-6197140 1.0000 80 chrIII:4986993-4987073 1.0000 80 chrII:15205463-15205543 1.0000 80 chrX:2802973-2803053 1.0000 80 chrX:7798499-7798579 1.0000 80 chrI:4840985-4841065 1.0000 80 chrI:5281816-5281896 1.0000 80 chrIII:4343289-4343369 1.0000 80 chrIV:257258-257338 1.0000 80 chrIV:11071073-11071153 1.0000 80 chrI:5072321-5072401 1.0000 80 chrII:10558519-10558599 1.0000 80 chrIV:6369659-6369739 1.0000 80 chrX:11689258-11689338 1.0000 80 chrII:11464066-11464146 1.0000 80 chrII:7182720-7182800 1.0000 80 chrX:3379214-3379294 1.0000 80 chrII:7187143-7187223 1.0000 80 chrX:12914441-12914521 1.0000 80 chrIII:3855011-3855091 1.0000 80 chrV:2603161-2603241 1.0000 80 chrX:1853748-1853828 1.0000 80 chrIV:6393398-6393478 1.0000 80 chrIV:1761729-1761809 1.0000 80 chrI:8369820-8369900 1.0000 80 chrV:10465607-10465687 1.0000 80 chrIV:11068440-11068520 1.0000 80 chrI:4767838-4767918 1.0000 80 chrIV:6747853-6747933 1.0000 80 chrII:9931169-9931249 1.0000 80 chrX:3115967-3116047 1.0000 80 chrV:16022782-16022862 1.0000 80 chrI:8511427-8511507 1.0000 80 chrIV:7816582-7816662 1.0000 80 chrII:7272657-7272737 1.0000 80 chrV:9536689-9536769 1.0000 80 chrI:9445882-9445962 1.0000 80 chrV:13551775-13551855 1.0000 80 chrV:10736893-10736973 1.0000 80 chrV:10953723-10953803 1.0000 80 chrV:12636172-12636252 1.0000 80 chrII:12914846-12914926 1.0000 80 chrM:5142-5222 1.0000 80 chrIII:9798642-9798722 1.0000 80 chrIII:8700733-8700813 1.0000 80 chrI:2710578-2710658 1.0000 80 chrV:20710329-20710409 1.0000 80 chrI:5540787-5540867 1.0000 80 chrX:13337382-13337462 1.0000 80 chrIV:4475987-4476067 1.0000 80 chrV:20424927-20425007 1.0000 80 chrII:8741413-8741493 1.0000 80 chrI:7147824-7147904 1.0000 80 chrIV:12653242-12653322 1.0000 80 chrX:11693208-11693288 1.0000 80 chrII:15255867-15255947 1.0000 80 chrIV:13289498-13289578 1.0000 80 chrI:14756440-14756520 1.0000 80 chrIII:10120250-10120330 1.0000 80 chrV:729333-729413 1.0000 80 chrIV:8813754-8813834 1.0000 80 chrII:7323475-7323555 1.0000 80 chrI:10192952-10193032 1.0000 80 chrII:7380528-7380608 1.0000 80 chrII:10446428-10446508 1.0000 80 chrI:8787769-8787849 1.0000 80 chrI:13422878-13422958 1.0000 80 chrV:10320318-10320398 1.0000 80 chrIV:11315041-11315121 1.0000 80 chrI:4941254-4941334 1.0000 80 chrI:7159334-7159414 1.0000 80 chrI:9080117-9080197 1.0000 80 chrIV:4712653-4712733 1.0000 80 chrIV:6555605-6555685 1.0000 80 chrI:5659132-5659212 1.0000 80 chrII:7281958-7282038 1.0000 80 chrIII:385286-385366 1.0000 80 chrIII:10064322-10064402 1.0000 80 chrII:8041819-8041899 1.0000 80 chrII:6891985-6892065 1.0000 80 chrII:7240423-7240503 1.0000 80 chrII:7090238-7090318 1.0000 80 chrI:10161997-10162077 1.0000 80 chrII:7537809-7537889 1.0000 80 chrV:12819392-12819472 1.0000 80 chrIII:3695550-3695630 1.0000 80 chrI:6760296-6760376 1.0000 80 chrI:8255166-8255246 1.0000 80 chrII:8813782-8813862 1.0000 80 chrII:8746031-8746111 1.0000 80 chrX:17385239-17385319 1.0000 80 chrIV:10242885-10242965 1.0000 80 chrIV:1623835-1623915 1.0000 80 chrII:7374331-7374411 1.0000 80 chrIII:9191184-9191264 1.0000 80 chrIII:10325461-10325541 1.0000 80 chrV:10031951-10032031 1.0000 80 chrIII:10719207-10719287 1.0000 80 chrI:5997624-5997704 1.0000 80 chrIII:8265826-8265906 1.0000 80 chrII:10300530-10300610 1.0000 80 chrIII:11112901-11112981 1.0000 80 chrIV:5548978-5549058 1.0000 80 chrV:10714267-10714347 1.0000 80 chrII:12346783-12346863 1.0000 80 chrI:3636657-3636737 1.0000 80 chrX:5209606-5209686 1.0000 80 chrII:7623295-7623375 1.0000 80 chrII:6097620-6097700 1.0000 80 chrIII:8085542-8085622 1.0000 80 chrIII:5550987-5551067 1.0000 80 chrIV:15901215-15901295 1.0000 80 chrI:4012387-4012467 1.0000 80 chrIII:6402457-6402537 1.0000 80 chrI:14787913-14787993 1.0000 80 chrV:12301122-12301202 1.0000 80 chrII:8012231-8012311 1.0000 80 chrII:7283252-7283332 1.0000 80 chrV:728070-728150 1.0000 80 chrV:11798549-11798629 1.0000 80 chrV:13757531-13757611 1.0000 80 chrIII:13779721-13779801 1.0000 80 chrII:7382741-7382821 1.0000 80 chrX:4853143-4853223 1.0000 80 chrIII:8288764-8288844 1.0000 80 chrIII:5108939-5109019 1.0000 80 chrI:7759186-7759266 1.0000 80 chrII:8745166-8745246 1.0000 80 chrX:12759715-12759795 1.0000 80 chrII:6189076-6189156 1.0000 80 chrX:4957457-4957537 1.0000 80 chrIII:8967788-8967868 1.0000 80 chrIII:9742167-9742247 1.0000 80 chrX:600832-600912 1.0000 80 chrV:13788155-13788235 1.0000 80 chrIII:8268416-8268496 1.0000 80 chrII:8068416-8068496 1.0000 80 chrI:1280217-1280297 1.0000 80 chrIII:8665021-8665101 1.0000 80 chrX:14894556-14894636 1.0000 80 chrI:10176315-10176395 1.0000 80 chrII:8743700-8743780 1.0000 80 chrII:9601842-9601922 1.0000 80 chrV:12649721-12649801 1.0000 80 chrI:7084875-7084955 1.0000 80 chrII:8927389-8927469 1.0000 80 chrV:6107626-6107706 1.0000 80 chrIII:8983852-8983932 1.0000 80 chrIII:4912482-4912562 1.0000 80 chrM:1729-1809 1.0000 80 chrI:9393790-9393870 1.0000 80 chrI:5106145-5106225 1.0000 80 chrIV:5089190-5089270 1.0000 80 chrIII:5102787-5102867 1.0000 80 chrI:13418742-13418822 1.0000 80 chrII:4676350-4676430 1.0000 80 chrII:7318293-7318373 1.0000 80 chrI:9701951-9702031 1.0000 80 chrI:14769051-14769131 1.0000 80 chrIII:4905511-4905591 1.0000 80 chrII:6197736-6197816 1.0000 80 chrIII:5047441-5047521 1.0000 80 chrII:5511966-5512046 1.0000 80 chrX:10772864-10772944 1.0000 80 chrII:15089573-15089653 1.0000 80 chrIV:8498899-8498979 1.0000 80 chrII:8820467-8820547 1.0000 80 chrII:10200908-10200988 1.0000 80 chrII:7836716-7836796 1.0000 80 chrX:2840444-2840524 1.0000 80 chrX:16902017-16902097 1.0000 80 chrIII:6625435-6625515 1.0000 80 chrV:13908388-13908468 1.0000 80 chrIII:7359187-7359267 1.0000 80 chrIII:4187048-4187128 1.0000 80 chrII:11578475-11578555 1.0000 80 chrX:11974834-11974914 1.0000 80 chrX:7569796-7569876 1.0000 80 chrIII:13187905-13187985 1.0000 80 chrIV:5160322-5160402 1.0000 80 chrX:6743016-6743096 1.0000 80 chrII:9669105-9669185 1.0000 80 chrII:9263936-9264016 1.0000 80 chrV:7089352-7089432 1.0000 80 chrV:15432225-15432305 1.0000 80 chrIII:8529069-8529149 1.0000 80 chrIII:13064872-13064952 1.0000 80 chrX:2316300-2316380 1.0000 80 chrI:13349209-13349289 1.0000 80 chrIV:3803431-3803511 1.0000 80 chrIII:9465590-9465670 1.0000 80 chrI:3785544-3785624 1.0000 80 chrIV:4477310-4477390 1.0000 80 chrV:14423487-14423567 1.0000 80 chrIV:9858245-9858325 1.0000 80 chrII:10395528-10395608 1.0000 80 chrI:7479422-7479502 1.0000 80 chrI:8759887-8759967 1.0000 80 chrV:11889253-11889333 1.0000 80 chrIII:12110771-12110851 1.0000 80 chrII:6908918-6908998 1.0000 80 chrII:506200-506280 1.0000 80 chrI:13528260-13528340 1.0000 80 chrIII:8155329-8155409 1.0000 80 chrII:13829746-13829826 1.0000 80 chrII:11713686-11713766 1.0000 80 chrI:10754559-10754639 1.0000 80 chrI:9955974-9956054 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/worm/inference_raw/MEME/RankLinear2.0_40_lir-3/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/worm/fasta/RankLinear2.0_40/lir-3.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.288 C 0.211 G 0.211 T 0.29 Background letter frequencies (from file dataset with add-one prior applied): A 0.288 C 0.211 G 0.211 T 0.29 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF YGGCCKHG MEME-1 width = 8 sites = 59 llr = 541 E-value = 1.4e-048 ******************************************************************************** -------------------------------------------------------------------------------- Motif YGGCCKHG MEME-1 Description -------------------------------------------------------------------------------- Simplified A :::::24: pos.-specific C 4::aa:2: probability G :aa::6:a matrix T 6::::34: bits 2.2 **** * 2.0 **** * 1.8 **** * 1.6 **** * Relative 1.3 **** * Entropy 1.1 **** * (13.2 bits) 0.9 ***** * 0.7 ****** * 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TGGCCGAG consensus C TT sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGGCCKHG MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrII:10395528-10395608 42 1.08e-05 AGAAAAACTT CGGCCGTG TAGTCCTCTC chrII:15089573-15089653 46 1.08e-05 CTAGGCCACG CGGCCGTG TAGTCCTCCT chrI:5106145-5106225 65 1.08e-05 TTGTATTTCT CGGCCGTG GCCGAACT chrIII:4912482-4912562 47 1.08e-05 TTCGGATTCT CGGCCGTG GCCTAGAATA chrII:6097620-6097700 22 1.08e-05 GAGGAGTACA CGGCCGAG CATGCTCCGC chrIV:11315041-11315121 46 1.08e-05 GAATTTCGTG CGGCCGTG GCTGAGTTTT chrII:12914846-12914926 55 1.08e-05 GGCGGATTCT CGGCCGTG TACTCCACTC chrIV:6369659-6369739 22 1.08e-05 GAGGAGTACA CGGCCGAG TATCACACAA chrIV:257258-257338 51 1.08e-05 GAGGAGTACA CGGCCGTG TGGTCTAGAA chrV:13409234-13409314 24 1.08e-05 GAGGAGTACA CGGCCGAG AATCACAAAA chrIII:5190327-5190407 67 1.08e-05 CTGTAGTTCT CGGCCGTG TACTCC chrIV:5188196-5188276 48 1.08e-05 TTGTGAAACT CGGCCGTG TACTCCACTC chrV:14423487-14423567 67 2.56e-05 GTTTGAAAGA TGGCCGAG TTGCTG chrII:11578475-11578555 72 2.56e-05 GGTGTAAGCG TGGCCGAG A chrII:10200908-10200988 35 2.56e-05 TGGTGGCCGA TGGCCGTG GCCTAGGAAA chrIII:5047441-5047521 8 2.56e-05 GAATTGG TGGCCGTG GAAGAGAAAT chrII:8927389-8927469 23 2.56e-05 TTCTAACTGG TGGCCGAG AAATTCGCTG chrIII:5108939-5109019 52 2.56e-05 TTGGAAACGA TGGCCGAG TCTGAATGGC chrX:5209606-5209686 68 2.56e-05 GGTAGTGAGT TGGCCGTG CGGCT chrI:6760296-6760376 23 2.56e-05 AGTTTCCACA TGGCCGAG CTATCTCGTG chrI:10161997-10162077 3 2.56e-05 AG TGGCCGTG GCCGAACGCG chrIII:10064322-10064402 4 2.56e-05 AGG TGGCCGTG GCCTAGAAGT chrIV:12653242-12653322 46 2.56e-05 CTGGGTCTCG TGGCCGAG ATTCCGACAC chrX:11689258-11689338 3 2.56e-05 AA TGGCCGTG GCCGAACTTT chrX:7798499-7798579 24 2.56e-05 ATGGAGGGTG TGGCCGTG TAAGAGGGGG chrIII:13439572-13439652 22 2.56e-05 GGTGGCCTAG TGGCCGTG GAAGAAAAAA chrX:7569796-7569876 42 2.95e-05 GAGTACTTCA CGGCCGCG TGGCCTAGTT chrX:4853143-4853223 57 2.95e-05 GTCGTATCTT CGGCCGCG GCCACGACCA chrIV:13289498-13289578 51 2.95e-05 AGAATCTGCA CGGCCGCG CGCGCGTGCA chrIII:8967788-8967868 32 3.49e-05 TCGAAAATGG TGGCCGCG TGGCCGAACT chrIV:10242885-10242965 47 3.49e-05 GAAAACACAA TGGCCGCG AAAGTTTTCA chrV:16022782-16022862 29 3.49e-05 GGTGGCCGCG TGGCCGCG GACTAAGTGA chrV:10441259-10441339 22 3.49e-05 TCAAGTTTTA TGGCCGCG GCCTAGAATC chrIII:10120250-10120330 11 4.97e-05 ACGAACATTG CGGCCTTG CAGGGCAGAG chrIII:9798642-9798722 49 4.97e-05 GTATGGGCTG CGGCCTAG TTTCATTGAC chrIII:9465590-9465670 43 7.00e-05 ACGAGCGCGT TGGCCTAG AAAACGCATG chrIII:8529069-8529149 23 7.00e-05 GAATCGTCGC TGGCCTAG TTTTCTCTTT chrI:9393790-9393870 31 7.00e-05 CACGACATGC TGGCCTAG AAACCTCTGC chrV:6107626-6107706 44 7.00e-05 AACCGGGACG TGGCCTAG CGTTCCGCGA chrV:10031951-10032031 8 7.00e-05 GGCCGTG TGGCCTAG AAACTTCTTG chrI:8255166-8255246 41 7.00e-05 AAACTGACGG TGGCCTAG AATCCGACAA chrI:5659132-5659212 13 7.00e-05 AACGAAAATA TGGCCTAG AAATATTCGC chrV:20424927-20425007 47 7.00e-05 TTCCCAATGG TGGCCTAG AAAACCCCGA chrV:10736893-10736973 20 7.00e-05 AAACTTGAAT TGGCCTAG AAACCTTTCC chrV:9536689-9536769 30 7.00e-05 CACCCAAACG TGGCCTAG CAATACCCAA chrIV:7816582-7816662 8 7.00e-05 CACCGTG TGGCCTAG GAAACTCTTG chrII:11464066-11464146 36 7.00e-05 AAATCTACAC TGGCCTAG AACATGTTAG chrIV:13783691-13783771 24 7.00e-05 TCAAAAACCT TGGCCTTG GCCGAAAAAC chrI:5118930-5119010 1 7.00e-05 . TGGCCTAG AATTTCAACT chrIV:9797518-9797598 18 7.00e-05 ACAAACGCCT TGGCCTAG AACTTTCACA chrV:10320318-10320398 54 9.75e-05 CGCGTTCTCT CGGCCATG TACTCCTCTC chrI:14756440-14756520 36 9.75e-05 ACCTCGGTCA CGGCCATG CCACTTTTTT chrV:2603161-2603241 53 9.75e-05 TCCTCGTCCA CGGCCATG CGAAATGCGC chrIV:11592970-11593050 34 9.75e-05 TGCTAGTCCG CGGCCATG ACTAATCAGA chrIII:4187048-4187128 28 1.23e-04 GCATCGACCG CGGCCACG TCAACTTTCC chrIV:8498899-8498979 22 1.23e-04 TTCTCGGCCA CGGCCACG AAGTATTAAC chrI:9080117-9080197 22 1.23e-04 TGATGTTTTT CGGCCACG GCCACCGCAA chrI:5281816-5281896 27 1.23e-04 ACGAATTTCT CGGCCACG GCCATCAGTT chrII:14563968-14564048 22 1.23e-04 GCAGCTCTCG CGGCCACG TTAGCTTTGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGGCCKHG MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:10395528-10395608 1.1e-05 41_[+1]_31 chrII:15089573-15089653 1.1e-05 45_[+1]_27 chrI:5106145-5106225 1.1e-05 64_[+1]_8 chrIII:4912482-4912562 1.1e-05 46_[+1]_26 chrII:6097620-6097700 1.1e-05 21_[+1]_51 chrIV:11315041-11315121 1.1e-05 45_[+1]_27 chrII:12914846-12914926 1.1e-05 54_[+1]_18 chrIV:6369659-6369739 1.1e-05 21_[+1]_51 chrIV:257258-257338 1.1e-05 50_[+1]_22 chrV:13409234-13409314 1.1e-05 23_[+1]_49 chrIII:5190327-5190407 1.1e-05 66_[+1]_6 chrIV:5188196-5188276 1.1e-05 47_[+1]_25 chrV:14423487-14423567 2.6e-05 66_[+1]_6 chrII:11578475-11578555 2.6e-05 71_[+1]_1 chrII:10200908-10200988 2.6e-05 34_[+1]_38 chrIII:5047441-5047521 2.6e-05 7_[+1]_65 chrII:8927389-8927469 2.6e-05 22_[+1]_50 chrIII:5108939-5109019 2.6e-05 51_[+1]_21 chrX:5209606-5209686 2.6e-05 67_[+1]_5 chrI:6760296-6760376 2.6e-05 22_[+1]_50 chrI:10161997-10162077 2.6e-05 2_[+1]_70 chrIII:10064322-10064402 2.6e-05 3_[+1]_69 chrIV:12653242-12653322 2.6e-05 45_[+1]_27 chrX:11689258-11689338 2.6e-05 2_[+1]_70 chrX:7798499-7798579 2.6e-05 23_[+1]_49 chrIII:13439572-13439652 2.6e-05 21_[+1]_51 chrX:7569796-7569876 2.9e-05 41_[+1]_31 chrX:4853143-4853223 2.9e-05 56_[+1]_16 chrIV:13289498-13289578 2.9e-05 50_[+1]_22 chrIII:8967788-8967868 3.5e-05 31_[+1]_41 chrIV:10242885-10242965 3.5e-05 46_[+1]_26 chrV:16022782-16022862 3.5e-05 28_[+1]_44 chrV:10441259-10441339 3.5e-05 21_[+1]_51 chrIII:10120250-10120330 5e-05 10_[+1]_62 chrIII:9798642-9798722 5e-05 48_[+1]_24 chrIII:9465590-9465670 7e-05 42_[+1]_30 chrIII:8529069-8529149 7e-05 22_[+1]_50 chrI:9393790-9393870 7e-05 30_[+1]_42 chrV:6107626-6107706 7e-05 43_[+1]_29 chrV:10031951-10032031 7e-05 7_[+1]_65 chrI:8255166-8255246 7e-05 40_[+1]_32 chrI:5659132-5659212 7e-05 12_[+1]_60 chrV:20424927-20425007 7e-05 46_[+1]_26 chrV:10736893-10736973 7e-05 19_[+1]_53 chrV:9536689-9536769 7e-05 29_[+1]_43 chrIV:7816582-7816662 7e-05 7_[+1]_65 chrII:11464066-11464146 7e-05 35_[+1]_37 chrIV:13783691-13783771 7e-05 23_[+1]_49 chrI:5118930-5119010 7e-05 [+1]_72 chrIV:9797518-9797598 7e-05 17_[+1]_55 chrV:10320318-10320398 9.8e-05 53_[+1]_19 chrI:14756440-14756520 9.8e-05 35_[+1]_37 chrV:2603161-2603241 9.8e-05 52_[+1]_20 chrIV:11592970-11593050 9.8e-05 33_[+1]_39 chrIII:4187048-4187128 0.00012 27_[+1]_45 chrIV:8498899-8498979 0.00012 21_[+1]_51 chrI:9080117-9080197 0.00012 21_[+1]_51 chrI:5281816-5281896 0.00012 26_[+1]_46 chrII:14563968-14564048 0.00012 21_[+1]_51 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGGCCKHG MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF YGGCCKHG width=8 seqs=59 chrII:10395528-10395608 ( 42) CGGCCGTG 1 chrII:15089573-15089653 ( 46) CGGCCGTG 1 chrI:5106145-5106225 ( 65) CGGCCGTG 1 chrIII:4912482-4912562 ( 47) CGGCCGTG 1 chrII:6097620-6097700 ( 22) CGGCCGAG 1 chrIV:11315041-11315121 ( 46) CGGCCGTG 1 chrII:12914846-12914926 ( 55) CGGCCGTG 1 chrIV:6369659-6369739 ( 22) CGGCCGAG 1 chrIV:257258-257338 ( 51) CGGCCGTG 1 chrV:13409234-13409314 ( 24) CGGCCGAG 1 chrIII:5190327-5190407 ( 67) CGGCCGTG 1 chrIV:5188196-5188276 ( 48) CGGCCGTG 1 chrV:14423487-14423567 ( 67) TGGCCGAG 1 chrII:11578475-11578555 ( 72) TGGCCGAG 1 chrII:10200908-10200988 ( 35) TGGCCGTG 1 chrIII:5047441-5047521 ( 8) TGGCCGTG 1 chrII:8927389-8927469 ( 23) TGGCCGAG 1 chrIII:5108939-5109019 ( 52) TGGCCGAG 1 chrX:5209606-5209686 ( 68) TGGCCGTG 1 chrI:6760296-6760376 ( 23) TGGCCGAG 1 chrI:10161997-10162077 ( 3) TGGCCGTG 1 chrIII:10064322-10064402 ( 4) TGGCCGTG 1 chrIV:12653242-12653322 ( 46) TGGCCGAG 1 chrX:11689258-11689338 ( 3) TGGCCGTG 1 chrX:7798499-7798579 ( 24) TGGCCGTG 1 chrIII:13439572-13439652 ( 22) TGGCCGTG 1 chrX:7569796-7569876 ( 42) CGGCCGCG 1 chrX:4853143-4853223 ( 57) CGGCCGCG 1 chrIV:13289498-13289578 ( 51) CGGCCGCG 1 chrIII:8967788-8967868 ( 32) TGGCCGCG 1 chrIV:10242885-10242965 ( 47) TGGCCGCG 1 chrV:16022782-16022862 ( 29) TGGCCGCG 1 chrV:10441259-10441339 ( 22) TGGCCGCG 1 chrIII:10120250-10120330 ( 11) CGGCCTTG 1 chrIII:9798642-9798722 ( 49) CGGCCTAG 1 chrIII:9465590-9465670 ( 43) TGGCCTAG 1 chrIII:8529069-8529149 ( 23) TGGCCTAG 1 chrI:9393790-9393870 ( 31) TGGCCTAG 1 chrV:6107626-6107706 ( 44) TGGCCTAG 1 chrV:10031951-10032031 ( 8) TGGCCTAG 1 chrI:8255166-8255246 ( 41) TGGCCTAG 1 chrI:5659132-5659212 ( 13) TGGCCTAG 1 chrV:20424927-20425007 ( 47) TGGCCTAG 1 chrV:10736893-10736973 ( 20) TGGCCTAG 1 chrV:9536689-9536769 ( 30) TGGCCTAG 1 chrIV:7816582-7816662 ( 8) TGGCCTAG 1 chrII:11464066-11464146 ( 36) TGGCCTAG 1 chrIV:13783691-13783771 ( 24) TGGCCTTG 1 chrI:5118930-5119010 ( 1) TGGCCTAG 1 chrIV:9797518-9797598 ( 18) TGGCCTAG 1 chrV:10320318-10320398 ( 54) CGGCCATG 1 chrI:14756440-14756520 ( 36) CGGCCATG 1 chrV:2603161-2603241 ( 53) CGGCCATG 1 chrIV:11592970-11593050 ( 34) CGGCCATG 1 chrIII:4187048-4187128 ( 28) CGGCCACG 1 chrIV:8498899-8498979 ( 22) CGGCCACG 1 chrI:9080117-9080197 ( 22) CGGCCACG 1 chrI:5281816-5281896 ( 27) CGGCCACG 1 chrII:14563968-14564048 ( 22) CGGCCACG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGGCCKHG MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.53308 E= 1.4e-048 -1253 106 -1253 95 -1253 -1253 225 -1253 -1253 -1253 225 -1253 -1253 224 -1253 -1253 -1253 224 -1253 -1253 -92 -1253 141 -1 50 -6 -1253 43 -1253 -1253 225 -1253 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGGCCKHG MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 59 E= 1.4e-048 0.000000 0.440678 0.000000 0.559322 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.152542 0.000000 0.559322 0.288136 0.406780 0.203390 0.000000 0.389831 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGGCCKHG MEME-1 regular expression -------------------------------------------------------------------------------- [TC]GGCC[GT][ATC]G -------------------------------------------------------------------------------- Time 5.15 secs. ******************************************************************************** ******************************************************************************** MOTIF CTMGGCCA MEME-2 width = 8 sites = 34 llr = 316 E-value = 6.1e-016 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTMGGCCA MEME-2 Description -------------------------------------------------------------------------------- Simplified A ::4::2:a pos.-specific C 9:6::8a: probability G :::a9::: matrix T 1a::1::: bits 2.2 * * 2.0 * * 1.8 * ** 1.6 ** ** ** Relative 1.3 ** ** ** Entropy 1.1 ******** (13.4 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CTCGGCCA consensus A A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTMGGCCA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIII:8529069-8529149 43 7.37e-06 TTCTCTTTTA CTCGGCCA TGGCATACAT chrIV:8498899-8498979 14 7.37e-06 ATCGAGTTTT CTCGGCCA CGGCCACGAA chrIII:8967788-8967868 61 7.37e-06 GGCTGGAGTT CTCGGCCA TAATGATATT chrII:6097620-6097700 54 7.37e-06 GAGGGCATTC CTCGGCCA TATTACGATA chrIV:13783691-13783771 44 7.37e-06 CGAAAAACTT CTCGGCCA TGAACATGTG chrIV:8019949-8020029 9 7.37e-06 TGAGATTT CTCGGCCA CAGTATCGCA chrIII:9465590-9465670 71 1.74e-05 TCAGCATTTT CTAGGCCA TT chrII:15089573-15089653 36 1.74e-05 CATTTGGTTC CTAGGCCA CGCGGCCGTG chrI:3636657-3636737 15 1.74e-05 GATGGGAAAC CTAGGCCA CGGCCATCGA chrI:5659132-5659212 41 1.74e-05 TTGTCGGTTC CTAGGCCA CCACCTCGTT chrV:10320318-10320398 30 1.74e-05 GTTCCTAGAA CTAGGCCA CGGCCACGCG chrI:8511427-8511507 30 1.74e-05 ACGGAGAAAG CTAGGCCA TAAGTGGGAT chrV:16022782-16022862 52 1.74e-05 AGTGACGCCG CTAGGCCA TTTGGCGAAA chrI:5118930-5119010 40 1.74e-05 CATCAGAAAA CTAGGCCA TTTTTTCACA chrIV:9777707-9777787 23 1.74e-05 ATGGAGTTTT CTAGGCCA CATGAACACA chrIV:9797518-9797598 46 1.74e-05 AAGGAGACTT CTAGGCCA TATTTGATGA chrIV:3803431-3803511 51 2.75e-05 GTGTACTCCT CTCGGACA AGGGATTAAT chrIII:10064322-10064402 37 2.75e-05 GTGTACTCCA CTCGGACA ACATTTTCTT chrI:7159334-7159414 47 2.75e-05 GTGTACTCCA CTCGGACA ACATTGTTTC chrII:12914846-12914926 70 2.75e-05 GTGTACTCCA CTCGGACA ATC chrV:13551775-13551855 70 2.75e-05 GTGTACTCCT CTCGGACA ACT chrX:7798499-7798579 69 2.75e-05 CCGTAGTACA CTCGGACA AGTC chrIV:5188196-5188276 63 2.75e-05 GTGTACTCCA CTCGGACA ATGAAGTAAT chrIV:5548978-5549058 64 3.76e-05 TTTGAAACAA TTCGGCCA TCAAAGTGT chrI:8759887-8759967 35 6.15e-05 TTTTCTAGGC CTCGTCCA CTTGTGTTGG chrX:13337382-13337462 6 6.15e-05 CGTTT CTCGTCCA ATGAATCACT chrV:2603161-2603241 45 6.15e-05 CCCGCACTTC CTCGTCCA CGGCCATGCG chrIII:8268416-8268496 55 7.53e-05 CAAAAATACA TTAGGCCA CGGCCACCAC chrIII:3695550-3695630 32 7.53e-05 TTCCTAGGCT TTAGGCCA CACGGCCTCC chrX:1853748-1853828 19 7.53e-05 CAATGAGATC TTAGGCCA CCACATGTGT chrII:11464066-11464146 50 7.53e-05 CTAGAACATG TTAGGCCA TGGCCTAGAA chrI:9955974-9956054 35 8.91e-05 TGTGCGAGAC CTAGTCCA CGGCCATCCG chrIII:9191184-9191264 42 9.45e-05 TGTCGTTTTT CCCGGCCA CAAATTTTGG chrI:14756440-14756520 28 1.05e-04 CAGGTGAAAC CTCGGTCA CGGCCATGCC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTMGGCCA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:8529069-8529149 7.4e-06 42_[+2]_30 chrIV:8498899-8498979 7.4e-06 13_[+2]_59 chrIII:8967788-8967868 7.4e-06 60_[+2]_12 chrII:6097620-6097700 7.4e-06 53_[+2]_19 chrIV:13783691-13783771 7.4e-06 43_[+2]_29 chrIV:8019949-8020029 7.4e-06 8_[+2]_64 chrIII:9465590-9465670 1.7e-05 70_[+2]_2 chrII:15089573-15089653 1.7e-05 35_[+2]_37 chrI:3636657-3636737 1.7e-05 14_[+2]_58 chrI:5659132-5659212 1.7e-05 40_[+2]_32 chrV:10320318-10320398 1.7e-05 29_[+2]_43 chrI:8511427-8511507 1.7e-05 29_[+2]_43 chrV:16022782-16022862 1.7e-05 51_[+2]_21 chrI:5118930-5119010 1.7e-05 39_[+2]_33 chrIV:9777707-9777787 1.7e-05 22_[+2]_50 chrIV:9797518-9797598 1.7e-05 45_[+2]_27 chrIV:3803431-3803511 2.7e-05 50_[+2]_22 chrIII:10064322-10064402 2.7e-05 36_[+2]_36 chrI:7159334-7159414 2.7e-05 46_[+2]_26 chrII:12914846-12914926 2.7e-05 69_[+2]_3 chrV:13551775-13551855 2.7e-05 69_[+2]_3 chrX:7798499-7798579 2.7e-05 68_[+2]_4 chrIV:5188196-5188276 2.7e-05 62_[+2]_10 chrIV:5548978-5549058 3.8e-05 63_[+2]_9 chrI:8759887-8759967 6.1e-05 34_[+2]_38 chrX:13337382-13337462 6.1e-05 5_[+2]_67 chrV:2603161-2603241 6.1e-05 44_[+2]_28 chrIII:8268416-8268496 7.5e-05 54_[+2]_18 chrIII:3695550-3695630 7.5e-05 31_[+2]_41 chrX:1853748-1853828 7.5e-05 18_[+2]_54 chrII:11464066-11464146 7.5e-05 49_[+2]_23 chrI:9955974-9956054 8.9e-05 34_[+2]_38 chrIII:9191184-9191264 9.4e-05 41_[+2]_31 chrI:14756440-14756520 0.0001 27_[+2]_45 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTMGGCCA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTMGGCCA width=8 seqs=34 chrIII:8529069-8529149 ( 43) CTCGGCCA 1 chrIV:8498899-8498979 ( 14) CTCGGCCA 1 chrIII:8967788-8967868 ( 61) CTCGGCCA 1 chrII:6097620-6097700 ( 54) CTCGGCCA 1 chrIV:13783691-13783771 ( 44) CTCGGCCA 1 chrIV:8019949-8020029 ( 9) CTCGGCCA 1 chrIII:9465590-9465670 ( 71) CTAGGCCA 1 chrII:15089573-15089653 ( 36) CTAGGCCA 1 chrI:3636657-3636737 ( 15) CTAGGCCA 1 chrI:5659132-5659212 ( 41) CTAGGCCA 1 chrV:10320318-10320398 ( 30) CTAGGCCA 1 chrI:8511427-8511507 ( 30) CTAGGCCA 1 chrV:16022782-16022862 ( 52) CTAGGCCA 1 chrI:5118930-5119010 ( 40) CTAGGCCA 1 chrIV:9777707-9777787 ( 23) CTAGGCCA 1 chrIV:9797518-9797598 ( 46) CTAGGCCA 1 chrIV:3803431-3803511 ( 51) CTCGGACA 1 chrIII:10064322-10064402 ( 37) CTCGGACA 1 chrI:7159334-7159414 ( 47) CTCGGACA 1 chrII:12914846-12914926 ( 70) CTCGGACA 1 chrV:13551775-13551855 ( 70) CTCGGACA 1 chrX:7798499-7798579 ( 69) CTCGGACA 1 chrIV:5188196-5188276 ( 63) CTCGGACA 1 chrIV:5548978-5549058 ( 64) TTCGGCCA 1 chrI:8759887-8759967 ( 35) CTCGTCCA 1 chrX:13337382-13337462 ( 6) CTCGTCCA 1 chrV:2603161-2603241 ( 45) CTCGTCCA 1 chrIII:8268416-8268496 ( 55) TTAGGCCA 1 chrIII:3695550-3695630 ( 32) TTAGGCCA 1 chrX:1853748-1853828 ( 19) TTAGGCCA 1 chrII:11464066-11464146 ( 50) TTAGGCCA 1 chrI:9955974-9956054 ( 35) CTAGTCCA 1 chrIII:9191184-9191264 ( 42) CCCGGCCA 1 chrI:14756440-14756520 ( 28) CTCGGTCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTMGGCCA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.4321 E= 6.1e-016 -1173 201 -1173 -98 -1173 -284 -1173 174 62 140 -1173 -1173 -1173 -1173 225 -1173 -1173 -1173 207 -130 -48 185 -1173 -330 -1173 224 -1173 -1173 180 -1173 -1173 -1173 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTMGGCCA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 34 E= 6.1e-016 0.000000 0.852941 0.000000 0.147059 0.000000 0.029412 0.000000 0.970588 0.441176 0.558824 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.882353 0.117647 0.205882 0.764706 0.000000 0.029412 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTMGGCCA MEME-2 regular expression -------------------------------------------------------------------------------- CT[CA]GG[CA]CA -------------------------------------------------------------------------------- Time 8.82 secs. ******************************************************************************** ******************************************************************************** MOTIF MMGAGARA MEME-3 width = 8 sites = 50 llr = 388 E-value = 5.9e-004 ******************************************************************************** -------------------------------------------------------------------------------- Motif MMGAGARA MEME-3 Description -------------------------------------------------------------------------------- Simplified A 45:a:a57 pos.-specific C 44:::::: probability G 2:a:a:53 matrix T :2:::::: bits 2.2 * * 2.0 * * 1.8 **** 1.6 **** Relative 1.3 **** Entropy 1.1 ****** (11.2 bits) 0.9 ****** 0.7 ****** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AAGAGAAA consensus CC GG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MMGAGARA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrI:13349209-13349289 26 2.36e-05 TACAGTTTCT CCGAGAGA TACGCAGACG chrIII:3695550-3695630 65 2.36e-05 GAGAAATGCG CAGAGAGA GCGCAGAG chrII:15255867-15255947 27 2.36e-05 CGGCTCTTCT CAGAGAGA CGTAGAGTAT chrX:2840444-2840524 17 8.81e-05 TATGTGATTT ACGAGAGA TAAAAAGCAA chrIII:8983852-8983932 50 8.81e-05 AGGCAATGAT AAGAGAGA TAGTGAGAGT chrI:4012387-4012467 7 8.81e-05 TAAAAA AAGAGAGA GAGAGACGTA chrIII:10120250-10120330 24 8.81e-05 CCTTGCAGGG CAGAGAAA ATCGATAATG chrX:11693208-11693288 27 8.81e-05 CAGATAGACG CAGAGAAA ACCAGCACCC chrIV:11068440-11068520 71 8.81e-05 TTCAATGTTG AAGAGAGA TA chrV:2603161-2603241 11 8.81e-05 ATGAATTTGA CCGAGAAA ATTGTCCGCT chrII:14563968-14564048 73 8.81e-05 TGTATATTTT CAGAGAAA chrV:4694829-4694909 1 8.81e-05 . ACGAGAGA TCAACTGAAA chrII:9669105-9669185 34 1.05e-04 CATACATTTT CCGAGAGG AGTACACAAA chrIV:5160322-5160402 31 1.05e-04 TGTGTGTTAC CCGAGAGG AGTCCACAAG chrIII:4912482-4912562 18 1.05e-04 CTTGTCTTGT CCGAGAGG AGTACACGAC chrI:5997624-5997704 36 1.05e-04 ACGAGTTGAA CAGAGAGG GAGAAGCTTT chrIV:6369659-6369739 8 1.05e-04 TAATTGT CCGAGAGG AGTACACGGC chrIV:257258-257338 37 1.05e-04 AATCCATTGT CCGAGAGG AGTACACGGC chrV:13409234-13409314 10 1.05e-04 ACTAATTGT CCGAGAGG AGTACACGGC chrI:7479422-7479502 42 1.49e-04 AGGAGAGTAG AAGAGAAA TGAAGATGAA chrII:10395528-10395608 29 1.49e-04 AAAAGTGCGG AAGAGAAA AACTTCGGCC chrIII:5047441-5047521 17 1.49e-04 GTGGCCGTGG AAGAGAAA TTGAAAAAAT chrIV:6555605-6555685 60 1.49e-04 TGCCCACGTG ACGAGAAA GCACGTGGAA chrII:7380528-7380608 18 1.49e-04 AATAAAAATT AAGAGAAA TGCCCCTCTT chrI:7147824-7147904 41 1.49e-04 aaaagggaga acgagaaa agTGCTACAG chrI:8369820-8369900 48 1.49e-04 AAGATCTGTG AAGAGAAA TCTTGAAATT chrII:11464066-11464146 9 1.49e-04 AATTATTT AAGAGAAA ATGTGCCGTA chrIV:8019949-8020029 54 1.49e-04 GGTCTCTCGC ACGAGAAA TTAGTACCCG chrI:9955974-9956054 12 1.97e-04 GAGACCTCCT CCGAGAAG GAAAATGTGC chrI:7759186-7759266 12 1.97e-04 CCTATTAAGC AAGAGAGG GAGACAATTC chrIV:1761729-1761809 56 1.97e-04 GAAAGATGAG CAGAGAAG ATATGGGATA chrII:10714386-10714466 30 1.97e-04 CGAGGTTTTG AAGAGAGG GGAAAACTCG chrV:7089352-7089432 22 2.20e-04 CTAGTGAGTT GCGAGAGA AAACTGGTTT chrV:728070-728150 45 2.20e-04 ATATCATTAG GAGAGAGA GACAATTGAT chrIII:10719207-10719287 64 2.20e-04 GTACGTGTGA GAGAGAGA GCTGAGGCC chrI:9445882-9445962 42 2.20e-04 TAAATagagt gagagaga cgcgagagaa chrIII:4986993-4987073 6 2.20e-04 CGTCC GCGAGAGA AAAAAGCGCG chrII:8741413-8741493 5 2.53e-04 GGTA AAGAGAAG ACTTCTCTCG chrIII:11112901-11112981 44 2.99e-04 caaaaaataa gcgagaaa aaaaacgcga chrII:7211445-7211525 22 2.99e-04 AGATGATTTT GAGAGAAA AAAGAATGAA chrII:9263936-9264016 50 3.53e-04 ACCGGAAGAG ATGAGAGA TGAGCACCTG chrI:1280217-1280297 25 3.53e-04 AACTTTTTAA CTGAGAAA ATCGGAACAT chrIII:13064387-13064467 4 3.53e-04 TCT CTGAGAAA GTCCATAGAT chrX:6741177-6741257 32 3.53e-04 TACCGTGTGT ATGAGAGA GTGTGACACA chrV:13788155-13788235 45 3.87e-04 CGAAATGGGT GAGAGAAG AATGGGATAT chrIII:9191184-9191264 24 3.87e-04 GACTCCATGG CTGAGAGG TGTCGTTTTT chrV:20710329-20710409 41 3.87e-04 CTCGTGAGCT GCGAGAAG GTTCTGACGT chrI:14769051-14769131 13 4.13e-04 GACAGACACA ATGAGAAA CTTTGTGCTC chrIV:8813754-8813834 14 4.13e-04 ATAAGAGATA ATGAGAAA TTCAGATATA chrV:12649721-12649801 3 4.40e-04 CT CTGAGAAG TGAAGGAAGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MMGAGARA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:13349209-13349289 2.4e-05 25_[+3]_47 chrIII:3695550-3695630 2.4e-05 64_[+3]_8 chrII:15255867-15255947 2.4e-05 26_[+3]_46 chrX:2840444-2840524 8.8e-05 16_[+3]_56 chrIII:8983852-8983932 8.8e-05 49_[+3]_23 chrI:4012387-4012467 8.8e-05 6_[+3]_66 chrIII:10120250-10120330 8.8e-05 23_[+3]_49 chrX:11693208-11693288 8.8e-05 26_[+3]_46 chrIV:11068440-11068520 8.8e-05 70_[+3]_2 chrV:2603161-2603241 8.8e-05 10_[+3]_62 chrII:14563968-14564048 8.8e-05 72_[+3] chrV:4694829-4694909 8.8e-05 [+3]_72 chrII:9669105-9669185 0.00011 33_[+3]_39 chrIV:5160322-5160402 0.00011 30_[+3]_42 chrIII:4912482-4912562 0.00011 17_[+3]_55 chrI:5997624-5997704 0.00011 35_[+3]_37 chrIV:6369659-6369739 0.00011 7_[+3]_65 chrIV:257258-257338 0.00011 36_[+3]_36 chrV:13409234-13409314 0.00011 9_[+3]_63 chrI:7479422-7479502 0.00015 41_[+3]_31 chrII:10395528-10395608 0.00015 28_[+3]_44 chrIII:5047441-5047521 0.00015 16_[+3]_56 chrIV:6555605-6555685 0.00015 59_[+3]_13 chrII:7380528-7380608 0.00015 17_[+3]_55 chrI:7147824-7147904 0.00015 40_[+3]_32 chrI:8369820-8369900 0.00015 47_[+3]_25 chrII:11464066-11464146 0.00015 8_[+3]_64 chrIV:8019949-8020029 0.00015 53_[+3]_19 chrI:9955974-9956054 0.0002 11_[+3]_61 chrI:7759186-7759266 0.0002 11_[+3]_61 chrIV:1761729-1761809 0.0002 55_[+3]_17 chrII:10714386-10714466 0.0002 29_[+3]_43 chrV:7089352-7089432 0.00022 21_[+3]_51 chrV:728070-728150 0.00022 44_[+3]_28 chrIII:10719207-10719287 0.00022 63_[+3]_9 chrI:9445882-9445962 0.00022 41_[+3]_31 chrIII:4986993-4987073 0.00022 5_[+3]_67 chrII:8741413-8741493 0.00025 4_[+3]_68 chrIII:11112901-11112981 0.0003 43_[+3]_29 chrII:7211445-7211525 0.0003 21_[+3]_51 chrII:9263936-9264016 0.00035 49_[+3]_23 chrI:1280217-1280297 0.00035 24_[+3]_48 chrIII:13064387-13064467 0.00035 3_[+3]_69 chrX:6741177-6741257 0.00035 31_[+3]_41 chrV:13788155-13788235 0.00039 44_[+3]_28 chrIII:9191184-9191264 0.00039 23_[+3]_49 chrV:20710329-20710409 0.00039 40_[+3]_32 chrI:14769051-14769131 0.00041 12_[+3]_60 chrIV:8813754-8813834 0.00041 13_[+3]_59 chrV:12649721-12649801 0.00044 2_[+3]_70 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MMGAGARA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF MMGAGARA width=8 seqs=50 chrI:13349209-13349289 ( 26) CCGAGAGA 1 chrIII:3695550-3695630 ( 65) CAGAGAGA 1 chrII:15255867-15255947 ( 27) CAGAGAGA 1 chrX:2840444-2840524 ( 17) ACGAGAGA 1 chrIII:8983852-8983932 ( 50) AAGAGAGA 1 chrI:4012387-4012467 ( 7) AAGAGAGA 1 chrIII:10120250-10120330 ( 24) CAGAGAAA 1 chrX:11693208-11693288 ( 27) CAGAGAAA 1 chrIV:11068440-11068520 ( 71) AAGAGAGA 1 chrV:2603161-2603241 ( 11) CCGAGAAA 1 chrII:14563968-14564048 ( 73) CAGAGAAA 1 chrV:4694829-4694909 ( 1) ACGAGAGA 1 chrII:9669105-9669185 ( 34) CCGAGAGG 1 chrIV:5160322-5160402 ( 31) CCGAGAGG 1 chrIII:4912482-4912562 ( 18) CCGAGAGG 1 chrI:5997624-5997704 ( 36) CAGAGAGG 1 chrIV:6369659-6369739 ( 8) CCGAGAGG 1 chrIV:257258-257338 ( 37) CCGAGAGG 1 chrV:13409234-13409314 ( 10) CCGAGAGG 1 chrI:7479422-7479502 ( 42) AAGAGAAA 1 chrII:10395528-10395608 ( 29) AAGAGAAA 1 chrIII:5047441-5047521 ( 17) AAGAGAAA 1 chrIV:6555605-6555685 ( 60) ACGAGAAA 1 chrII:7380528-7380608 ( 18) AAGAGAAA 1 chrI:7147824-7147904 ( 41) ACGAGAAA 1 chrI:8369820-8369900 ( 48) AAGAGAAA 1 chrII:11464066-11464146 ( 9) AAGAGAAA 1 chrIV:8019949-8020029 ( 54) ACGAGAAA 1 chrI:9955974-9956054 ( 12) CCGAGAAG 1 chrI:7759186-7759266 ( 12) AAGAGAGG 1 chrIV:1761729-1761809 ( 56) CAGAGAAG 1 chrII:10714386-10714466 ( 30) AAGAGAGG 1 chrV:7089352-7089432 ( 22) GCGAGAGA 1 chrV:728070-728150 ( 45) GAGAGAGA 1 chrIII:10719207-10719287 ( 64) GAGAGAGA 1 chrI:9445882-9445962 ( 42) GAGAGAGA 1 chrIII:4986993-4987073 ( 6) GCGAGAGA 1 chrII:8741413-8741493 ( 5) AAGAGAAG 1 chrIII:11112901-11112981 ( 44) GCGAGAAA 1 chrII:7211445-7211525 ( 22) GAGAGAAA 1 chrII:9263936-9264016 ( 50) ATGAGAGA 1 chrI:1280217-1280297 ( 25) CTGAGAAA 1 chrIII:13064387-13064467 ( 4) CTGAGAAA 1 chrX:6741177-6741257 ( 32) ATGAGAGA 1 chrV:13788155-13788235 ( 45) GAGAGAAG 1 chrIII:9191184-9191264 ( 24) CTGAGAGG 1 chrV:20710329-20710409 ( 41) GCGAGAAG 1 chrI:14769051-14769131 ( 13) ATGAGAAA 1 chrIV:8813754-8813834 ( 14) ATGAGAAA 1 chrV:12649721-12649801 ( 3) CTGAGAAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MMGAGARA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.4321 E= 5.9e-004 55 92 -23 -1229 74 77 -1229 -86 -1229 -1229 225 -1229 180 -1229 -1229 -1229 -1229 -1229 225 -1229 180 -1229 -1229 -1229 80 -1229 125 -1229 124 -1229 60 -1229 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MMGAGARA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 50 E= 5.9e-004 0.420000 0.400000 0.180000 0.000000 0.480000 0.360000 0.000000 0.160000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.500000 0.000000 0.500000 0.000000 0.680000 0.000000 0.320000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MMGAGARA MEME-3 regular expression -------------------------------------------------------------------------------- [AC][AC]GAGA[AG][AG] -------------------------------------------------------------------------------- Time 12.42 secs. ******************************************************************************** ******************************************************************************** MOTIF GCCTAGAA MEME-4 width = 8 sites = 8 llr = 90 E-value = 4.2e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCCTAGAA MEME-4 Description -------------------------------------------------------------------------------- Simplified A ::::a:aa pos.-specific C :aa::::: probability G a::::a:: matrix T :::a:::: bits 2.2 *** * 2.0 *** * 1.8 ******** 1.6 ******** Relative 1.3 ******** Entropy 1.1 ******** (16.2 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GCCTAGAA consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCTAGAA MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIII:4912482-4912562 55 1.37e-05 CTCGGCCGTG GCCTAGAA TATTAGTCAA chrIV:5548978-5549058 39 1.37e-05 AACACCGGCA GCCTAGAA AAATCCATTT chrIV:10242885-10242965 32 1.37e-05 CAAACGCGGG GCCTAGAA AACACAATGG chrIII:10064322-10064402 12 1.37e-05 GGTGGCCGTG GCCTAGAA GTGGCGCGTG chrIV:13289498-13289578 37 1.37e-05 TTGAACGGTG GCCTAGAA TCTGCACGGC chrV:13551775-13551855 22 1.37e-05 GCCAAAAAGT GCCTAGAA AAACACAAAT chrII:11464066-11464146 60 1.37e-05 TTAGGCCATG GCCTAGAA AAGAAGCtgt chrV:10441259-10441339 30 1.37e-05 TATGGCCGCG GCCTAGAA TCCGACAACC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCTAGAA MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:4912482-4912562 1.4e-05 54_[+4]_18 chrIV:5548978-5549058 1.4e-05 38_[+4]_34 chrIV:10242885-10242965 1.4e-05 31_[+4]_41 chrIII:10064322-10064402 1.4e-05 11_[+4]_61 chrIV:13289498-13289578 1.4e-05 36_[+4]_36 chrV:13551775-13551855 1.4e-05 21_[+4]_51 chrII:11464066-11464146 1.4e-05 59_[+4]_13 chrV:10441259-10441339 1.4e-05 29_[+4]_43 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCTAGAA MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCCTAGAA width=8 seqs=8 chrIII:4912482-4912562 ( 55) GCCTAGAA 1 chrIV:5548978-5549058 ( 39) GCCTAGAA 1 chrIV:10242885-10242965 ( 32) GCCTAGAA 1 chrIII:10064322-10064402 ( 12) GCCTAGAA 1 chrIV:13289498-13289578 ( 37) GCCTAGAA 1 chrV:13551775-13551855 ( 22) GCCTAGAA 1 chrII:11464066-11464146 ( 60) GCCTAGAA 1 chrV:10441259-10441339 ( 30) GCCTAGAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCTAGAA MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.155 E= 4.2e+001 -965 -965 225 -965 -965 224 -965 -965 -965 224 -965 -965 -965 -965 -965 178 180 -965 -965 -965 -965 -965 225 -965 180 -965 -965 -965 180 -965 -965 -965 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCTAGAA MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 8 E= 4.2e+001 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCTAGAA MEME-4 regular expression -------------------------------------------------------------------------------- GCCTAGAA -------------------------------------------------------------------------------- Time 15.91 secs. ******************************************************************************** ******************************************************************************** MOTIF CGTSTACT MEME-5 width = 8 sites = 17 llr = 163 E-value = 3.9e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif CGTSTACT MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::7:: pos.-specific C a::4::a: probability G :a:61::: matrix T ::a:93:a bits 2.2 ** * 2.0 ** * 1.8 *** ** 1.6 *** ** Relative 1.3 ***** ** Entropy 1.1 ***** ** (13.8 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CGTGTACT consensus C T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGTSTACT MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIII:9465590-9465670 25 1.39e-05 TTTTTGTCCT CGTGTACT ACGAGCGCGT chrIV:3803431-3803511 40 1.39e-05 GCCACACGAC CGTGTACT CCTCTCGGAC chrIII:13187905-13187985 66 1.39e-05 GGTCACCACC CGTGTACT ACACGTG chrI:6760296-6760376 37 1.39e-05 CGAGCTATCT CGTGTACT CCTCTCGAAC chrIII:10064322-10064402 26 1.39e-05 AGAAGTGGCG CGTGTACT CCACTCGGAC chrI:7159334-7159414 36 1.39e-05 AAAGTTAGTC CGTGTACT CCACTCGGAC chrV:13551775-13551855 59 1.39e-05 ACCCAAAACT CGTGTACT CCTCTCGGAC chrX:11689258-11689338 25 1.39e-05 AACTTTGCCG CGTGTACT CCTCTCGGAT chrV:10441259-10441339 47 1.39e-05 ATCCGACAAC CGTGTACT CCTCCTAGAC chrI:10176315-10176395 58 2.78e-05 TTTCCCGTTT CGTCTACT TGCTTCCCTT chrI:14769051-14769131 46 5.59e-05 ACGTCTGCGT CGTCTTCT CACAAAAAAA chrIII:13779721-13779801 22 5.59e-05 tctattacta cgtcttct ctattagaat chrI:5540787-5540867 50 5.59e-05 TTTTCTACAA CGTCTTCT TCTCTTCTAT chrII:7182720-7182800 56 5.59e-05 CCGTCATTTT CGTCTTCT TTTTCCTTTT chrII:15212664-15212744 23 5.59e-05 GTCACAGTTT CGTCTTCT AACATTAGGT chrI:9393790-9393870 12 6.60e-05 TGATAGTCCG CGTGGACT ACACGACATG chrI:10161997-10162077 54 6.60e-05 ATGTACTCCT CGTGGACT AATCCATTAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGTSTACT MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:9465590-9465670 1.4e-05 24_[+5]_48 chrIV:3803431-3803511 1.4e-05 39_[+5]_33 chrIII:13187905-13187985 1.4e-05 65_[+5]_7 chrI:6760296-6760376 1.4e-05 36_[+5]_36 chrIII:10064322-10064402 1.4e-05 25_[+5]_47 chrI:7159334-7159414 1.4e-05 35_[+5]_37 chrV:13551775-13551855 1.4e-05 58_[+5]_14 chrX:11689258-11689338 1.4e-05 24_[+5]_48 chrV:10441259-10441339 1.4e-05 46_[+5]_26 chrI:10176315-10176395 2.8e-05 57_[+5]_15 chrI:14769051-14769131 5.6e-05 45_[+5]_27 chrIII:13779721-13779801 5.6e-05 21_[+5]_51 chrI:5540787-5540867 5.6e-05 49_[+5]_23 chrII:7182720-7182800 5.6e-05 55_[+5]_17 chrII:15212664-15212744 5.6e-05 22_[+5]_50 chrI:9393790-9393870 6.6e-05 11_[+5]_61 chrI:10161997-10162077 6.6e-05 53_[+5]_19 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGTSTACT MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CGTSTACT width=8 seqs=17 chrIII:9465590-9465670 ( 25) CGTGTACT 1 chrIV:3803431-3803511 ( 40) CGTGTACT 1 chrIII:13187905-13187985 ( 66) CGTGTACT 1 chrI:6760296-6760376 ( 37) CGTGTACT 1 chrIII:10064322-10064402 ( 26) CGTGTACT 1 chrI:7159334-7159414 ( 36) CGTGTACT 1 chrV:13551775-13551855 ( 59) CGTGTACT 1 chrX:11689258-11689338 ( 25) CGTGTACT 1 chrV:10441259-10441339 ( 47) CGTGTACT 1 chrI:10176315-10176395 ( 58) CGTCTACT 1 chrI:14769051-14769131 ( 46) CGTCTTCT 1 chrIII:13779721-13779801 ( 22) CGTCTTCT 1 chrI:5540787-5540867 ( 50) CGTCTTCT 1 chrII:7182720-7182800 ( 56) CGTCTTCT 1 chrII:15212664-15212744 ( 23) CGTCTTCT 1 chrI:9393790-9393870 ( 12) CGTGGACT 1 chrI:10161997-10162077 ( 54) CGTGGACT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGTSTACT MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.8621 E= 3.9e+001 -1073 224 -1073 -1073 -1073 -1073 225 -1073 -1073 -1073 -1073 178 -1073 74 162 -1073 -1073 -1073 -84 160 129 -1073 -1073 2 -1073 224 -1073 -1073 -1073 -1073 -1073 178 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGTSTACT MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 17 E= 3.9e+001 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.352941 0.647059 0.000000 0.000000 0.000000 0.117647 0.882353 0.705882 0.000000 0.000000 0.294118 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGTSTACT MEME-5 regular expression -------------------------------------------------------------------------------- CGT[GC]T[AT]CT -------------------------------------------------------------------------------- Time 19.27 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:10225213-10225293 8.17e-01 80 chrI:2571226-2571306 8.20e-01 80 chrIV:8975082-8975162 9.71e-01 80 chrII:2991859-2991939 4.90e-01 80 chrIV:13487168-13487248 4.39e-01 80 chrIV:5188196-5188276 4.53e-06 47_[+1(1.08e-05)]_7_[+2(2.75e-05)]_\ 10 chrV:4730247-4730327 4.76e-01 80 chrV:10441259-10441339 7.42e-06 21_[+1(3.49e-05)]_[+4(1.37e-05)]_9_\ [+5(1.39e-05)]_26 chrV:1060400-1060480 7.57e-01 80 chrII:2992472-2992552 9.85e-01 80 chrIV:8019949-8020029 3.75e-04 8_[+2(7.37e-06)]_64 chrIII:4862110-4862190 7.37e-01 80 chrIII:5190327-5190407 2.40e-05 66_[+1(1.08e-05)]_6 chrX:2857610-2857690 1.84e-01 80 chrIII:7858663-7858743 9.60e-01 80 chrIV:11592970-11593050 9.85e-04 33_[+1(9.75e-05)]_39 chrIV:9797518-9797598 1.69e-05 19_[+4(1.37e-05)]_18_[+2(1.74e-05)]_\ 13_[+2(3.76e-05)]_6 chrIII:13439572-13439652 1.01e-02 13_[+1(7.00e-05)]_[+1(2.56e-05)]_51 chrIII:3857113-3857193 7.64e-01 80 chrX:6741177-6741257 1.13e-01 80 chrIII:13474648-13474728 9.89e-01 80 chrII:7211445-7211525 2.31e-01 80 chrV:19488318-19488398 3.56e-01 80 chrV:13409234-13409314 9.74e-05 23_[+1(1.08e-05)]_49 chrX:3108719-3108799 1.88e-01 80 chrV:4694829-4694909 3.35e-01 [+3(8.81e-05)]_72 chrX:6741670-6741750 9.91e-01 80 chrIV:9777707-9777787 3.08e-02 22_[+2(1.74e-05)]_50 chrIV:11636471-11636551 2.90e-01 80 chrIII:13064387-13064467 4.56e-02 80 chrII:10714386-10714466 1.56e-02 80 chrV:9097310-9097390 9.69e-01 80 chrI:5118930-5119010 1.37e-05 2_[+4(1.37e-05)]_29_[+2(1.74e-05)]_\ 33 chrIV:13783691-13783771 8.87e-05 23_[+1(7.00e-05)]_12_[+2(7.37e-06)]_\ 29 chrX:15600174-15600254 9.93e-01 80 chrI:4792577-4792657 3.50e-01 80 chrII:15212664-15212744 1.08e-01 22_[+5(5.59e-05)]_50 chrI:4215784-4215864 2.47e-01 80 chrII:5819827-5819907 5.91e-02 80 chrII:14563968-14564048 3.84e-04 72_[+3(8.81e-05)] chrIII:4283276-4283356 8.69e-01 80 chrV:12635374-12635454 8.09e-01 80 chrII:6197060-6197140 9.47e-01 80 chrIII:4986993-4987073 1.15e-01 80 chrII:15205463-15205543 7.47e-01 80 chrX:2802973-2803053 8.99e-01 80 chrX:7798499-7798579 2.62e-04 23_[+1(2.56e-05)]_37_[+2(2.75e-05)]_\ 4 chrI:4840985-4841065 8.06e-01 80 chrI:5281816-5281896 4.53e-03 24_[+2(7.37e-06)]_48 chrIII:4343289-4343369 3.84e-02 80 chrIV:257258-257338 3.56e-05 50_[+1(1.08e-05)]_22 chrIV:11071073-11071153 7.03e-01 80 chrI:5072321-5072401 5.43e-01 80 chrII:10558519-10558599 7.18e-02 80 chrIV:6369659-6369739 4.92e-04 21_[+1(1.08e-05)]_51 chrX:11689258-11689338 3.08e-04 2_[+1(2.56e-05)]_14_[+5(1.39e-05)]_\ 48 chrII:11464066-11464146 2.11e-06 37_[+4(1.37e-05)]_4_[+2(7.53e-05)]_\ 2_[+4(1.37e-05)]_13 chrII:7182720-7182800 1.83e-01 55_[+5(5.59e-05)]_17 chrX:3379214-3379294 1.57e-01 80 chrII:7187143-7187223 2.99e-01 80 chrX:12914441-12914521 8.26e-01 80 chrIII:3855011-3855091 5.78e-01 80 chrV:2603161-2603241 6.47e-05 10_[+3(8.81e-05)]_26_[+2(6.15e-05)]_\ [+1(9.75e-05)]_20 chrX:1853748-1853828 6.31e-02 18_[+2(7.53e-05)]_54 chrIV:6393398-6393478 9.93e-01 80 chrIV:1761729-1761809 2.66e-01 80 chrI:8369820-8369900 8.31e-02 80 chrV:10465607-10465687 9.92e-01 80 chrIV:11068440-11068520 2.52e-01 70_[+3(8.81e-05)]_2 chrI:4767838-4767918 5.51e-01 80 chrIV:6747853-6747933 2.81e-01 80 chrII:9931169-9931249 8.02e-02 80 chrX:3115967-3116047 9.97e-02 80 chrV:16022782-16022862 2.37e-04 20_[+1(3.49e-05)]_[+1(3.49e-05)]_15_\ [+2(1.74e-05)]_21 chrI:8511427-8511507 1.29e-02 29_[+2(1.74e-05)]_43 chrIV:7816582-7816662 3.66e-03 7_[+1(7.00e-05)]_65 chrII:7272657-7272737 7.91e-01 80 chrV:9536689-9536769 6.66e-04 29_[+1(7.00e-05)]_43 chrI:9445882-9445962 2.75e-01 80 chrV:13551775-13551855 1.08e-06 21_[+4(1.37e-05)]_29_[+5(1.39e-05)]_\ 3_[+2(2.75e-05)]_3 chrV:10736893-10736973 1.18e-04 21_[+4(1.37e-05)]_51 chrV:10953723-10953803 9.95e-01 80 chrV:12636172-12636252 9.26e-01 80 chrII:12914846-12914926 4.81e-06 54_[+1(1.08e-05)]_7_[+2(2.75e-05)]_\ 3 chrM:5142-5222 6.60e-01 80 chrIII:9798642-9798722 1.41e-03 48_[+1(4.97e-05)]_9_[+1(9.75e-05)]_\ 7 chrIII:8700733-8700813 6.78e-01 80 chrI:2710578-2710658 9.11e-01 80 chrV:20710329-20710409 1.13e-01 80 chrI:5540787-5540867 2.87e-01 49_[+5(5.59e-05)]_23 chrX:13337382-13337462 1.25e-01 5_[+2(6.15e-05)]_67 chrIV:4475987-4476067 9.92e-01 80 chrV:20424927-20425007 9.75e-04 48_[+4(1.37e-05)]_24 chrII:8741413-8741493 8.50e-02 80 chrI:7147824-7147904 1.28e-01 80 chrIV:12653242-12653322 6.51e-03 45_[+1(2.56e-05)]_27 chrX:11693208-11693288 1.50e-01 26_[+3(8.81e-05)]_46 chrII:15255867-15255947 5.93e-02 26_[+3(2.36e-05)]_46 chrIV:13289498-13289578 9.17e-04 36_[+4(1.37e-05)]_6_[+1(2.95e-05)]_\ 22 chrI:14756440-14756520 1.91e-02 35_[+1(9.75e-05)]_37 chrIII:10120250-10120330 4.77e-05 10_[+1(4.97e-05)]_5_[+3(8.81e-05)]_\ 49 chrV:729333-729413 7.26e-01 80 chrIV:8813754-8813834 6.40e-01 80 chrII:7323475-7323555 6.30e-01 80 chrI:10192952-10193032 9.97e-01 80 chrII:7380528-7380608 3.75e-01 80 chrII:10446428-10446508 6.34e-01 80 chrI:8787769-8787849 2.19e-01 80 chrI:13422878-13422958 4.16e-01 80 chrV:10320318-10320398 1.51e-05 29_[+2(1.74e-05)]_14_[+2(7.37e-06)]_\ 9_[+2(2.75e-05)]_4 chrIV:11315041-11315121 1.58e-03 45_[+1(1.08e-05)]_27 chrI:4941254-4941334 3.57e-01 80 chrI:7159334-7159414 8.61e-06 35_[+5(1.39e-05)]_3_[+2(2.75e-05)]_\ 26 chrI:9080117-9080197 1.20e-02 19_[+2(3.76e-05)]_53 chrIV:4712653-4712733 5.10e-01 80 chrIV:6555605-6555685 7.47e-02 80 chrI:5659132-5659212 8.29e-06 14_[+4(1.37e-05)]_18_[+2(1.74e-05)]_\ 32 chrII:7281958-7282038 2.45e-01 80 chrIII:385286-385366 9.65e-01 80 chrIII:10064322-10064402 2.93e-08 3_[+1(2.56e-05)]_[+4(1.37e-05)]_6_\ [+5(1.39e-05)]_3_[+2(2.75e-05)]_36 chrII:8041819-8041899 7.40e-01 80 chrII:6891985-6892065 4.71e-01 80 chrII:7240423-7240503 9.17e-01 80 chrII:7090238-7090318 3.75e-01 80 chrI:10161997-10162077 2.22e-03 2_[+1(2.56e-05)]_43_[+5(6.60e-05)]_\ 19 chrII:7537809-7537889 7.64e-01 80 chrV:12819392-12819472 3.07e-01 80 chrIII:3695550-3695630 1.07e-03 31_[+2(7.53e-05)]_25_[+3(2.36e-05)]_\ 8 chrI:6760296-6760376 1.13e-04 4_[+5(6.60e-05)]_10_[+1(2.56e-05)]_\ 6_[+5(1.39e-05)]_36 chrI:8255166-8255246 1.89e-04 42_[+4(1.37e-05)]_30 chrII:8813782-8813862 8.38e-01 80 chrII:8746031-8746111 3.96e-01 80 chrX:17385239-17385319 7.19e-01 80 chrIV:10242885-10242965 4.03e-04 31_[+4(1.37e-05)]_7_[+1(3.49e-05)]_\ 26 chrIV:1623835-1623915 9.84e-01 80 chrII:7374331-7374411 7.73e-01 80 chrIII:9191184-9191264 5.15e-03 41_[+2(9.45e-05)]_31 chrIII:10325461-10325541 9.99e-01 80 chrV:10031951-10032031 1.06e-03 9_[+4(1.37e-05)]_63 chrIII:10719207-10719287 2.14e-01 80 chrI:5997624-5997704 1.63e-01 80 chrIII:8265826-8265906 5.85e-01 80 chrII:10300530-10300610 5.29e-01 80 chrIII:11112901-11112981 2.60e-02 80 chrIV:5548978-5549058 1.75e-04 38_[+4(1.37e-05)]_17_[+2(3.76e-05)]_\ 9 chrV:10714267-10714347 8.73e-01 80 chrII:12346783-12346863 6.61e-01 80 chrI:3636657-3636737 5.01e-03 14_[+2(1.74e-05)]_58 chrX:5209606-5209686 9.95e-02 67_[+1(2.56e-05)]_5 chrII:7623295-7623375 7.05e-01 80 chrII:6097620-6097700 5.08e-05 21_[+1(1.08e-05)]_24_[+2(7.37e-06)]_\ 19 chrIII:8085542-8085622 9.53e-01 80 chrIII:5550987-5551067 9.87e-01 80 chrIV:15901215-15901295 7.22e-01 80 chrI:4012387-4012467 1.00e-02 6_[+3(8.81e-05)]_66 chrIII:6402457-6402537 7.42e-01 80 chrI:14787913-14787993 2.24e-01 80 chrV:12301122-12301202 5.62e-01 80 chrII:8012231-8012311 4.42e-01 80 chrII:7283252-7283332 3.18e-01 80 chrV:728070-728150 1.39e-01 80 chrV:11798549-11798629 9.98e-01 80 chrV:13757531-13757611 9.71e-01 80 chrIII:13779721-13779801 6.79e-02 21_[+5(5.59e-05)]_51 chrII:7382741-7382821 9.35e-01 80 chrX:4853143-4853223 6.29e-03 56_[+1(2.95e-05)]_16 chrIII:8288764-8288844 4.24e-01 80 chrIII:5108939-5109019 2.87e-02 51_[+1(2.56e-05)]_6_[+1(7.00e-05)]_\ 7 chrI:7759186-7759266 4.79e-01 80 chrII:8745166-8745246 9.98e-01 80 chrX:12759715-12759795 3.25e-02 80 chrII:6189076-6189156 6.11e-01 80 chrX:4957457-4957537 4.19e-01 80 chrIII:8967788-8967868 3.38e-04 31_[+1(3.49e-05)]_21_[+2(7.37e-06)]_\ 12 chrIII:9742167-9742247 6.98e-01 80 chrX:600832-600912 9.42e-01 80 chrV:13788155-13788235 1.93e-01 80 chrIII:8268416-8268496 1.01e-01 54_[+2(7.53e-05)]_18 chrII:8068416-8068496 8.47e-01 80 chrI:1280217-1280297 2.64e-01 80 chrIII:8665021-8665101 8.17e-01 80 chrX:14894556-14894636 9.50e-01 80 chrI:10176315-10176395 9.20e-02 57_[+5(2.78e-05)]_15 chrII:8743700-8743780 9.65e-01 80 chrII:9601842-9601922 6.37e-01 80 chrV:12649721-12649801 1.93e-01 80 chrI:7084875-7084955 8.16e-01 80 chrII:8927389-8927469 2.18e-04 22_[+1(2.56e-05)]_50 chrV:6107626-6107706 1.57e-03 43_[+1(7.00e-05)]_29 chrIII:8983852-8983932 2.12e-01 49_[+3(8.81e-05)]_23 chrIII:4912482-4912562 3.47e-07 46_[+1(1.08e-05)]_[+4(1.37e-05)]_18 chrM:1729-1809 1.00e+00 80 chrI:9393790-9393870 1.44e-05 11_[+5(6.60e-05)]_13_[+4(1.37e-05)]_\ 40 chrI:5106145-5106225 3.50e-03 64_[+1(1.08e-05)]_8 chrIV:5089190-5089270 5.15e-01 80 chrIII:5102787-5102867 4.39e-01 80 chrI:13418742-13418822 2.26e-01 80 chrII:4676350-4676430 9.19e-01 80 chrII:7318293-7318373 7.56e-01 80 chrI:9701951-9702031 5.03e-01 80 chrI:14769051-14769131 3.08e-02 45_[+5(5.59e-05)]_27 chrIII:4905511-4905591 1.00e+00 80 chrII:6197736-6197816 9.63e-01 80 chrIII:5047441-5047521 8.29e-04 7_[+1(2.56e-05)]_40_[+1(9.75e-05)]_\ 17 chrII:5511966-5512046 7.98e-01 80 chrX:10772864-10772944 8.62e-01 80 chrII:15089573-15089653 4.92e-05 35_[+2(1.74e-05)]_2_[+1(1.08e-05)]_\ 27 chrIV:8498899-8498979 4.04e-04 13_[+2(7.37e-06)]_59 chrII:8820467-8820547 7.34e-01 80 chrII:10200908-10200988 4.58e-04 34_[+1(2.56e-05)]_38 chrII:7836716-7836796 6.48e-01 80 chrX:2840444-2840524 3.83e-01 16_[+3(8.81e-05)]_56 chrX:16902017-16902097 1.91e-01 80 chrIII:6625435-6625515 1.93e-01 80 chrV:13908388-13908468 3.91e-01 80 chrIII:7359187-7359267 7.42e-01 80 chrIII:4187048-4187128 2.46e-04 80 chrII:11578475-11578555 5.03e-03 54_[+1(7.00e-05)]_9_[+1(2.56e-05)]_\ 1 chrX:11974834-11974914 4.55e-01 80 chrX:7569796-7569876 6.53e-04 41_[+1(2.95e-05)]_[+1(7.00e-05)]_23 chrIII:13187905-13187985 2.86e-03 65_[+5(1.39e-05)]_7 chrIV:5160322-5160402 1.89e-01 80 chrX:6743016-6743096 3.84e-01 80 chrII:9669105-9669185 2.09e-01 80 chrII:9263936-9264016 3.95e-01 80 chrV:7089352-7089432 5.44e-02 80 chrV:15432225-15432305 9.03e-01 80 chrIII:8529069-8529149 9.66e-05 22_[+1(7.00e-05)]_12_[+2(7.37e-06)]_\ 30 chrIII:13064872-13064952 9.31e-01 80 chrX:2316300-2316380 2.17e-01 80 chrI:13349209-13349289 5.62e-02 25_[+3(2.36e-05)]_47 chrIV:3803431-3803511 1.33e-04 25_[+2(7.53e-05)]_6_[+5(1.39e-05)]_\ 3_[+2(2.75e-05)]_22 chrIII:9465590-9465670 3.30e-08 24_[+5(1.39e-05)]_12_[+4(1.37e-05)]_\ 18_[+2(1.74e-05)]_2 chrI:3785544-3785624 6.30e-01 80 chrIV:4477310-4477390 2.27e-01 80 chrV:14423487-14423567 7.45e-02 66_[+1(2.56e-05)]_6 chrIV:9858245-9858325 1.80e-01 80 chrII:10395528-10395608 4.36e-05 41_[+1(1.08e-05)]_31 chrI:7479422-7479502 2.70e-01 80 chrI:8759887-8759967 1.62e-03 34_[+2(6.15e-05)]_38 chrV:11889253-11889333 9.11e-01 80 chrIII:12110771-12110851 5.32e-01 80 chrII:6908918-6908998 5.01e-01 80 chrII:506200-506280 2.63e-01 13_[+5(9.65e-05)]_25_[+5(9.65e-05)]_\ 26 chrI:13528260-13528340 7.71e-01 80 chrIII:8155329-8155409 8.97e-01 80 chrII:13829746-13829826 9.87e-01 80 chrII:11713686-11713766 8.28e-01 80 chrI:10754559-10754639 9.31e-01 80 chrI:9955974-9956054 2.86e-03 34_[+2(8.91e-05)]_38 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n08.farnam.hpc.yale.internal ********************************************************************************