******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/worm/fasta/RankLinear2.0_40/lin-54.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrIII:1534582-1534662 1.0000 80 chrI:12492548-12492628 1.0000 80 chrIV:379740-379820 1.0000 80 chrIII:8985644-8985724 1.0000 80 chrIII:1429429-1429509 1.0000 80 chrI:13338276-13338356 1.0000 80 chrIV:807262-807342 1.0000 80 chrIII:5047898-5047978 1.0000 80 chrI:3608352-3608432 1.0000 80 chrV:16356946-16357026 1.0000 80 chrII:1130376-1130456 1.0000 80 chrIV:4176844-4176924 1.0000 80 chrI:2010549-2010629 1.0000 80 chrIII:1428594-1428674 1.0000 80 chrIV:2783367-2783447 1.0000 80 chrIII:2111512-2111592 1.0000 80 chrIV:842235-842315 1.0000 80 chrI:12491137-12491217 1.0000 80 chrV:6793130-6793210 1.0000 80 chrII:8891192-8891272 1.0000 80 chrII:5456033-5456113 1.0000 80 chrIII:5503804-5503884 1.0000 80 chrII:10948802-10948882 1.0000 80 chrIV:3132358-3132438 1.0000 80 chrV:969139-969219 1.0000 80 chrII:11573091-11573171 1.0000 80 chrII:14234522-14234602 1.0000 80 chrIV:9067811-9067891 1.0000 80 chrI:5300547-5300627 1.0000 80 chrV:2089938-2090018 1.0000 80 chrIII:1831249-1831329 1.0000 80 chrV:4963827-4963907 1.0000 80 chrIII:4792705-4792785 1.0000 80 chrI:12489266-12489346 1.0000 80 chrI:9287216-9287296 1.0000 80 chrII:1306710-1306790 1.0000 80 chrII:9647606-9647686 1.0000 80 chrI:6660246-6660326 1.0000 80 chrI:12806922-12807002 1.0000 80 chrII:9938983-9939063 1.0000 80 chrIII:12819322-12819402 1.0000 80 chrV:19645750-19645830 1.0000 80 chrIII:7085067-7085147 1.0000 80 chrII:14247370-14247450 1.0000 80 chrIII:11524242-11524322 1.0000 80 chrIII:3726618-3726698 1.0000 80 chrII:7863885-7863965 1.0000 80 chrII:12284221-12284301 1.0000 80 chrIV:9589249-9589329 1.0000 80 chrII:15025266-15025346 1.0000 80 chrIII:2858503-2858583 1.0000 80 chrI:3368662-3368742 1.0000 80 chrIII:13755860-13755940 1.0000 80 chrIV:13247914-13247994 1.0000 80 chrII:7353206-7353286 1.0000 80 chrIII:8370326-8370406 1.0000 80 chrII:13156247-13156327 1.0000 80 chrI:11580308-11580388 1.0000 80 chrV:4376336-4376416 1.0000 80 chrIII:8446196-8446276 1.0000 80 chrI:519976-520056 1.0000 80 chrI:5619281-5619361 1.0000 80 chrIV:4760841-4760921 1.0000 80 chrI:9518931-9519011 1.0000 80 chrIII:5719954-5720034 1.0000 80 chrIV:2677847-2677927 1.0000 80 chrI:14163351-14163431 1.0000 80 chrV:10018426-10018506 1.0000 80 chrIII:4095599-4095679 1.0000 80 chrII:14245036-14245116 1.0000 80 chrIII:9001629-9001709 1.0000 80 chrIII:9776085-9776165 1.0000 80 chrIII:4098276-4098356 1.0000 80 chrIV:14780685-14780765 1.0000 80 chrIII:12426727-12426807 1.0000 80 chrV:18086417-18086497 1.0000 80 chrIV:3212088-3212168 1.0000 80 chrI:3866586-3866666 1.0000 80 chrII:4471110-4471190 1.0000 80 chrIII:3723905-3723985 1.0000 80 chrII:14480016-14480096 1.0000 80 chrV:14133128-14133208 1.0000 80 chrV:11279712-11279792 1.0000 80 chrII:11968422-11968502 1.0000 80 chrII:3554808-3554888 1.0000 80 chrI:12507888-12507968 1.0000 80 chrIII:11290027-11290107 1.0000 80 chrI:3198991-3199071 1.0000 80 chrI:5138046-5138126 1.0000 80 chrIII:3390307-3390387 1.0000 80 chrIV:9403951-9404031 1.0000 80 chrV:1152880-1152960 1.0000 80 chrV:9382689-9382769 1.0000 80 chrIV:12154429-12154509 1.0000 80 chrII:1369487-1369567 1.0000 80 chrIV:10697740-10697820 1.0000 80 chrII:15208324-15208404 1.0000 80 chrIV:13154768-13154848 1.0000 80 chrIV:9778194-9778274 1.0000 80 chrIII:10442726-10442806 1.0000 80 chrI:14734795-14734875 1.0000 80 chrII:7664000-7664080 1.0000 80 chrI:11970066-11970146 1.0000 80 chrIII:7104197-7104277 1.0000 80 chrV:6043445-6043525 1.0000 80 chrI:12513593-12513673 1.0000 80 chrI:506300-506380 1.0000 80 chrI:5791992-5792072 1.0000 80 chrI:6513885-6513965 1.0000 80 chrI:13310795-13310875 1.0000 80 chrIII:9745694-9745774 1.0000 80 chrI:6467657-6467737 1.0000 80 chrI:128312-128392 1.0000 80 chrII:14410935-14411015 1.0000 80 chrIII:4313204-4313284 1.0000 80 chrIII:7060849-7060929 1.0000 80 chrIII:3331946-3332026 1.0000 80 chrIV:8538782-8538862 1.0000 80 chrV:14457231-14457311 1.0000 80 chrV:3578948-3579028 1.0000 80 chrIV:5666800-5666880 1.0000 80 chrIII:5663676-5663756 1.0000 80 chrV:4175773-4175853 1.0000 80 chrI:4765585-4765665 1.0000 80 chrIII:12225436-12225516 1.0000 80 chrIV:12390137-12390217 1.0000 80 chrV:8413768-8413848 1.0000 80 chrI:3409496-3409576 1.0000 80 chrIII:5727932-5728012 1.0000 80 chrIII:3309888-3309968 1.0000 80 chrIV:2311724-2311804 1.0000 80 chrI:2754827-2754907 1.0000 80 chrII:10884561-10884641 1.0000 80 chrIV:829850-829930 1.0000 80 chrIV:7796859-7796939 1.0000 80 chrIV:17273872-17273952 1.0000 80 chrI:7554741-7554821 1.0000 80 chrII:8270174-8270254 1.0000 80 chrI:5274307-5274387 1.0000 80 chrIII:12575481-12575561 1.0000 80 chrIII:10877688-10877768 1.0000 80 chrIII:4984853-4984933 1.0000 80 chrIII:5483884-5483964 1.0000 80 chrIV:2275728-2275808 1.0000 80 chrIII:3311782-3311862 1.0000 80 chrIII:10093252-10093332 1.0000 80 chrV:5717393-5717473 1.0000 80 chrI:9988370-9988450 1.0000 80 chrIII:3171569-3171649 1.0000 80 chrII:13732383-13732463 1.0000 80 chrII:11578016-11578096 1.0000 80 chrIII:2134087-2134167 1.0000 80 chrII:7880555-7880635 1.0000 80 chrII:11125254-11125334 1.0000 80 chrI:12903619-12903699 1.0000 80 chrIII:9848744-9848824 1.0000 80 chrII:13722930-13723010 1.0000 80 chrI:4583779-4583859 1.0000 80 chrII:10935501-10935581 1.0000 80 chrV:11917341-11917421 1.0000 80 chrIV:13512343-13512423 1.0000 80 chrII:13260691-13260771 1.0000 80 chrV:20480904-20480984 1.0000 80 chrI:12509901-12509981 1.0000 80 chrI:4185235-4185315 1.0000 80 chrI:13487571-13487651 1.0000 80 chrIII:12457400-12457480 1.0000 80 chrI:8664220-8664300 1.0000 80 chrIII:12977759-12977839 1.0000 80 chrIV:11337176-11337256 1.0000 80 chrII:7599104-7599184 1.0000 80 chrIII:11565752-11565832 1.0000 80 chrV:5996257-5996337 1.0000 80 chrIV:5469908-5469988 1.0000 80 chrII:11050812-11050892 1.0000 80 chrIV:7477857-7477937 1.0000 80 chrIII:10721205-10721285 1.0000 80 chrIII:4176356-4176436 1.0000 80 chrIV:6905590-6905670 1.0000 80 chrIII:4476939-4477019 1.0000 80 chrI:4586246-4586326 1.0000 80 chrI:9585234-9585314 1.0000 80 chrI:347321-347401 1.0000 80 chrV:5596553-5596633 1.0000 80 chrIV:4447528-4447608 1.0000 80 chrV:7199238-7199318 1.0000 80 chrV:11554437-11554517 1.0000 80 chrIV:1420790-1420870 1.0000 80 chrII:6198653-6198733 1.0000 80 chrIV:13029138-13029218 1.0000 80 chrII:12880568-12880648 1.0000 80 chrIV:1660116-1660196 1.0000 80 chrI:364263-364343 1.0000 80 chrI:6369865-6369945 1.0000 80 chrIII:9054582-9054662 1.0000 80 chrII:4222674-4222754 1.0000 80 chrIV:7312840-7312920 1.0000 80 chrV:6593853-6593933 1.0000 80 chrIV:7548374-7548454 1.0000 80 chrIV:7764465-7764545 1.0000 80 chrIV:2642233-2642313 1.0000 80 chrII:11726615-11726695 1.0000 80 chrIV:9368018-9368098 1.0000 80 chrV:4890123-4890203 1.0000 80 chrV:19673470-19673550 1.0000 80 chrIV:7509040-7509120 1.0000 80 chrIV:6421339-6421419 1.0000 80 chrIV:1177817-1177897 1.0000 80 chrIII:11580676-11580756 1.0000 80 chrIV:2902120-2902200 1.0000 80 chrII:8276225-8276305 1.0000 80 chrIV:12194860-12194940 1.0000 80 chrII:5377597-5377677 1.0000 80 chrII:12739475-12739555 1.0000 80 chrI:7056621-7056701 1.0000 80 chrIII:6946622-6946702 1.0000 80 chrIII:10562051-10562131 1.0000 80 chrV:17859214-17859294 1.0000 80 chrIII:4489077-4489157 1.0000 80 chrII:11782676-11782756 1.0000 80 chrI:5113903-5113983 1.0000 80 chrV:6496761-6496841 1.0000 80 chrV:3204620-3204700 1.0000 80 chrIV:12831777-12831857 1.0000 80 chrIV:992122-992202 1.0000 80 chrI:12733014-12733094 1.0000 80 chrV:4370287-4370367 1.0000 80 chrII:14125939-14126019 1.0000 80 chrI:1872613-1872693 1.0000 80 chrI:6317315-6317395 1.0000 80 chrI:2156755-2156835 1.0000 80 chrI:3931885-3931965 1.0000 80 chrIII:9794109-9794189 1.0000 80 chrV:15395477-15395557 1.0000 80 chrIII:8763264-8763344 1.0000 80 chrI:8309283-8309363 1.0000 80 chrV:775193-775273 1.0000 80 chrIV:11953031-11953111 1.0000 80 chrV:4754223-4754303 1.0000 80 chrII:1131296-1131376 1.0000 80 chrIII:3459373-3459453 1.0000 80 chrII:8940714-8940794 1.0000 80 chrI:9730425-9730505 1.0000 80 chrIV:280648-280728 1.0000 80 chrIII:12377440-12377520 1.0000 80 chrIII:8675134-8675214 1.0000 80 chrIII:9617089-9617169 1.0000 80 chrV:12184475-12184555 1.0000 80 chrI:534292-534372 1.0000 80 chrIV:6777408-6777488 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/worm/inference_raw/MEME/RankLinear2.0_40_lin-54/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/worm/fasta/RankLinear2.0_40/lin-54.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.285 C 0.211 G 0.215 T 0.29 Background letter frequencies (from file dataset with add-one prior applied): A 0.285 C 0.211 G 0.215 T 0.29 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GCGCSWWT MEME-1 width = 8 sites = 181 llr = 1199 E-value = 8.9e-097 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCGCSWWT MEME-1 Description -------------------------------------------------------------------------------- Simplified A ::::1453 pos.-specific C 1a:841:1 probability G 9:a26111 matrix T :::::446 bits 2.2 ** 2.0 ** 1.8 *** 1.6 **** Relative 1.3 **** Entropy 1.1 **** (9.6 bits) 0.9 ***** 0.7 ***** 0.4 ***** * 0.2 ******** 0.0 -------- Multilevel GCGCGAAT consensus GCTTA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCSWWT MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIV:7477857-7477937 73 1.04e-05 CAAATTTTAG GCGCGAAT chrIV:5469908-5469988 61 1.04e-05 TCATTTTAAG GCGCGAAT TTTTGCCTAA chrV:5996257-5996337 71 1.04e-05 AGCGCGTATC GCGCGAAT TT chrIV:17273872-17273952 70 1.04e-05 CAAAATTCTA GCGCGAAT TTA chrII:11968422-11968502 60 1.04e-05 GAGGTAAATG GCGCGAAT TTCGCTCATT chrIII:3171569-3171649 65 2.10e-05 TCCGTTTCTA GCGCGATT TATGAATT chrIII:5727932-5728012 49 2.10e-05 AATTTTCAAG GCGCGATT ATGATTTTCG chrI:13310795-13310875 56 2.10e-05 TATCAGTGGA GCGCGATT GCATTTAGAA chrII:12284221-12284301 58 2.10e-05 TTGCGCGCGC GCGCGATT TTTCCGATTT chrI:12491137-12491217 48 2.10e-05 TGTCGTTGGA GCGCGATT GCAGCAGGAT chrII:13722930-13723010 62 3.16e-05 CAAGCTAGAC GCGCGTAT TTCAAAATTT chrIII:12377440-12377520 13 4.24e-05 GTTCAATGGA GCGCGTTT GCCTAGCAAG chrI:12733014-12733094 8 4.24e-05 CATTGGA GCGCGTTT GCATCGAAAT chrIV:2902120-2902200 47 4.24e-05 GTCCAATGGA GCGCGTTT GCGCAACTCC chrI:13487571-13487651 44 4.24e-05 TGCCAATGGA GCGCGTTT GCACTATTTT chrIII:3309888-3309968 35 4.24e-05 tggctataga gcgcgttt gcaacaattc chrV:9382689-9382769 39 4.24e-05 aaataagttg gcgcgttt ttttgctggc chrIV:9403951-9404031 15 4.24e-05 GTGCGGTGGA GCGCGTTT GCACCGGAGA chrIII:3723905-3723985 50 4.24e-05 GTCCTGTGGA GCGCGTTT GCATTTGTAa chrIV:14780685-14780765 2 4.24e-05 A GCGCGTTT GCTTTTCGAA chrIII:4095599-4095679 43 4.24e-05 AAATTTTGGC GCGCGTTT TGAAAGAAAT chrIV:13247914-13247994 70 4.24e-05 tgtctctggc gcgcgttt gaa chrII:9938983-9939063 45 4.24e-05 ATTTGTGCGC GCGCGTTT AAAAAAAAAC chrI:5300547-5300627 60 4.24e-05 GACAACGCCC GCGCGTTT AAAAACATTT chrI:13338276-13338356 8 4.24e-05 TGAATTT GCGCGTTT TTGTCAaatg chrV:6043445-6043525 19 5.27e-05 ATTTGAACAC GCGCCAAT TTGAGGTCAA chrII:14234522-14234602 67 5.27e-05 CAATTCACCG GCGCCAAT TCGAAT chrV:4754223-4754303 2 6.31e-05 C GCGCCATT TCGCATTCGG chrII:11782676-11782756 62 8.37e-05 AAATCGAAAC GCGCGAAA AAATTAATTT chrV:4890123-4890203 50 8.37e-05 CTCGCAAAAC GCGCGAAA AAGTGAATTT chrIV:13029138-13029218 26 8.37e-05 TGGCCGCAAT GCGCGAAA CAAAAATTTT chrI:9585234-9585314 42 8.37e-05 ACTTTCAAGC GCGCGAAA ATAGTAATTT chrI:7554741-7554821 73 8.37e-05 CACTTTTTTC GCGCGAAA chrIV:7796859-7796939 63 8.37e-05 CGCCGCGGAG GCGCGAAA TTTTGATTTT chrV:3578948-3579028 62 8.37e-05 GGTGTTGTTG GCGCGAAA ATTTTGTTTT chrI:14734795-14734875 36 8.37e-05 tacatttgtg gcgcgaaa tatctcctag chrIV:9778194-9778274 72 8.37e-05 CCGTAATCGG GCGCGAAA G chrI:5138046-5138126 65 8.37e-05 TCCAGGGAGC GCGCGAAA CACATGCA chrI:519976-520056 66 8.37e-05 ATTTTTGCGC GCGCGAAA TTCAAAt chrIII:12819322-12819402 6 8.37e-05 tgaaa gcgcgaaa caattttcaa chrIV:842235-842315 24 8.37e-05 AAACACCGTC GCGCGAAA ATGCACAGTC chrI:3608352-3608432 55 8.37e-05 AACTGCGAGC GCGCGAAA TTTTTATTTG chrV:3204620-3204700 41 1.05e-04 TTTGAGATCC GCGCCTTT TTACTACGGT chrIII:10562051-10562131 70 1.05e-04 TGAGACCCGT GCGCCTTT AAA chrIV:9368018-9368098 43 1.05e-04 aggtctcgac gcgccttt cttctaaaca chrV:7199238-7199318 71 1.05e-04 AAATTGCAAT GCGCCTTT AA chrIII:12457400-12457480 71 1.05e-04 ATTAAGCTGT GCGCCTTT AA chrII:7880555-7880635 22 1.05e-04 ATGCAGCCAT GCGCCTTT AATACCGTAT chrIV:829850-829930 39 1.05e-04 AATGAGCTAT GCGCCTTT AAGTTCTACA chrIII:12225436-12225516 62 1.05e-04 TTCGAACCCT GCGCCTTT AAATTTACCG chrIV:5666800-5666880 44 1.05e-04 TATTACGCAT GCGCCTTT AAACGCAGAG chrV:14457231-14457311 52 1.05e-04 TTTGATGTGT GCGCCTTT AAAGAAGTAG chrIII:10442726-10442806 38 1.05e-04 TTTAATGTCT GCGCCTTT AAAGAATACC chrIV:12154429-12154509 52 1.05e-04 TTCATGCCAT GCGCCTTT GAAACTACAG chrV:1152880-1152960 22 1.05e-04 TTTCCTCTAT GCGCCTTT GACTGTATGT chrIII:3390307-3390387 13 1.05e-04 TATTGTGTAT GCGCCTTT AAATTTACAG chrIII:11290027-11290107 64 1.05e-04 AAAAATGTGT GCGCCTTT AAACGATTA chrIII:12426727-12426807 26 1.05e-04 CTTTAGGCAT GCGCCTTT AAACCAACCG chrII:14245036-14245116 70 1.05e-04 TTTTGCGTAT GCGCCTTT AAA chrI:11580308-11580388 65 1.05e-04 ATAAAAGCGT GCGCCTTT AAAGAACT chrIV:9589249-9589329 51 1.05e-04 AGTCTCTCAT GCGCCTTT AAAGGGGTAC chrII:14247370-14247450 6 1.05e-04 TTCAT GCGCCTTT AGTTAATCGC chrII:9647606-9647686 56 1.05e-04 TTTTAGTACT GCGCCTTT AAATTACTGT chrV:969139-969219 7 1.05e-04 TTGTAT GCGCCTTT AAGAAAAGTT chrIV:2783367-2783447 51 1.05e-04 TTCCTCATAT GCGCCTTT AAAGCTTACT chrIV:379740-379820 70 1.05e-04 GTAAAGTGAC GCGCCTTT AAT chrIV:7548374-7548454 40 1.23e-04 cgtgGCGCGC GCGCGCAT TACAAAAGTC chrIII:11565752-11565832 59 1.23e-04 TATCGGTGGA GCGCGCAT GCTTTTTTCG chrI:4765585-4765665 26 1.23e-04 CCAATGCACA GCGCGTAA TATTGAATTT chrI:3198991-3199071 31 1.23e-04 TATCGACTTC GCGCGTAA ATCGATAACG chrIII:13755860-13755940 15 1.23e-04 TTTTCAAGGC GCGCGCAT TGAAACCTGC chrIII:9617089-9617169 15 1.41e-04 TCGCGCTTCC GCGCGCTT TGAAAAACTA chrIV:4447528-4447608 16 1.41e-04 CGCAACACCC GCGCGCTT TTTGCGCAAC chrIII:4176356-4176436 62 1.41e-04 TAACAATAGA GCGCGCTT GCATTGTGAT chrV:2089938-2090018 65 1.41e-04 gttcgatgga gcgcgctt gcacgttt chrI:2754827-2754907 59 1.51e-04 agtgtttttg gcgccaaa atcgaaaaaA chrIII:5503804-5503884 17 1.51e-04 TTTTGAATTA GCGCCAAA ATAAAAAGGA chrI:534292-534372 55 1.72e-04 GCGTACCTCG GCGGGAAT TTAAAGAGAA chrIV:280648-280728 55 1.72e-04 ccaaaaattg gcgggaat tcaaatttct chrV:6593853-6593933 71 1.72e-04 ATCACCACGC GCGGGAAT CC chrIII:3311782-3311862 45 1.72e-04 GCGCTGGGCG GCGGGAAT TTGAATTTTT chrI:12513593-12513673 71 1.72e-04 GTTCGGCAAA GCGGGAAT TT chrIII:9001629-9001709 47 1.72e-04 tgTTTTTCAA GCGGGAAT TCAAAGACAA chrIV:2677847-2677927 62 1.72e-04 GAGTTTTTTG GCGGGAAT TCAAAATTTA chrII:7353206-7353286 54 1.72e-04 AATGCGGCAC GCGGGAAT TCAAACAAGC chrII:15025266-15025346 65 1.72e-04 GTAGTCCTTG GCGGGAAT TTGAAATT chrV:6793130-6793210 54 1.72e-04 CACAGTGAAC GCGGGAAT TTAAATTTTG chrIII:1428594-1428674 23 1.72e-04 acgcctggaa gcgggaat tcaaatttct chrV:16356946-16357026 55 1.72e-04 AATTTGCGGA GCGGGAAT TTGAATCTAG chrIII:9794109-9794189 15 2.01e-04 CACAGTTTTC GCGCCTAA TTTGTCTGCG chrII:7599104-7599184 52 2.01e-04 GAATTGTTGA GCGGGATT TTTTGTTTTT chrIII:2134087-2134167 54 2.01e-04 TGCGTACCCG GCGCCTAA CCTGACGAGC chrIII:2858503-2858583 63 2.01e-04 TTGCGTACCC GCGGGATT TTTTGATTTT chrII:8276225-8276305 47 2.38e-04 TTTAAATCAC GCGCCCTT TTTTTCGCAT chrIV:6421339-6421419 21 2.38e-04 ACGTCGAAAT GCGCCTTA AAATTCTACA chrIII:6946622-6946702 73 2.80e-04 ACAAAAATTA GCGCGAGT chrI:6513885-6513965 54 2.80e-04 AATCTTTTGC GCGCGAGT TTCTGAGTTT chrII:4471110-4471190 40 2.80e-04 TGTAGATCAG GCGGGTTT TGTCAGAATT chrI:3368662-3368742 33 2.80e-04 TCAAATTTTC GCGCGCAA ATTTGAAAAA chrII:10948802-10948882 12 2.80e-04 ACACACGCGC GCGCGCAA TGTCGCGCTC chrI:5113903-5113983 52 3.13e-04 AGACATTCGC GCGCGAAG AATTAATTTC chrII:12880568-12880648 15 3.13e-04 AAATCATCTG GCGCGCTA CCGTACCTTA chrII:6198653-6198733 26 3.13e-04 AGCATTGTGC GCGCGCTA CTTTTAAAAA chrV:5596553-5596633 47 3.13e-04 CCTCATTTCG GCGGCAAT TCAAATATGA chrI:347321-347401 65 3.13e-04 GATACGGTAG GCGCGAAG TACGGTAG chrIII:9776085-9776165 39 3.13e-04 CTCTTCCGTG GCGGCAAT TTGAACTTTT chrI:5619281-5619361 17 3.13e-04 TTGAAACACC GCGCGAAG TTAGATGTGC chrII:13156247-13156327 56 3.13e-04 agttcaattg gcggcaat tcaaatagga chrII:14410935-14411015 14 3.47e-04 GAAGGGACCT GCGCGATG TTTTATGCTG chrIV:13512343-13512423 64 3.92e-04 TGTCGACGCT GCGCCGAT GGGTCTCGC chrIV:2311724-2311804 8 3.92e-04 TTGGTCG GCGGGAAA ATTGAAAAGA chrIII:5663676-5663756 66 3.92e-04 ctatcgcatg gcgggaaa ttttttt chrII:7664000-7664080 39 3.92e-04 AGTTAGATCG GCGGGAAA AAACAATTTC chrIII:7085067-7085147 39 3.92e-04 TACCAACTGC GCGGGAAA ACTTTACGTT chrIII:1429429-1429509 66 3.92e-04 GGTTTTTATG GCGGGAAA TTCGAAT chrIII:1534582-1534662 64 3.92e-04 TGGACTAGTG GCGGGAAA TTCGAATTT chrI:6369865-6369945 43 4.66e-04 CGGTAAGCGA GCGCCAAC GCCACGCATT chrIV:3212088-3212168 45 4.66e-04 gcgcgcgcgc gcgcCGTT TTCAGTCGCT chrV:17859214-17859294 37 5.39e-04 GCGATTTTTC GCGCGGAA AACGAGGAAT chrIII:7060849-7060929 71 5.39e-04 GACCCTCACG CCGCGAAT TT chrI:6467657-6467737 50 5.39e-04 TAGGAAACTT GCGCGGAA GTTTGAATAA chrII:1369487-1369567 9 5.39e-04 TCATTGGA GCGCAATT GCGCATTGTG chrII:1130376-1130456 53 5.39e-04 TGTCATTAGA GCGCAATT GCAGCATGCG chrIV:1177817-1177897 53 6.71e-04 TTGAACTCCC GCGCATTT GAATTAACGA chrII:11726615-11726695 64 6.71e-04 AAAATTCAAC GCGCCTTC AAATGCGCG chrI:12509901-12509981 43 6.71e-04 TTACATTGGA GCGCATTT GCAGTGGCGG chrII:10884561-10884641 51 6.71e-04 ATTTGTCTAC GCGCCTTC TGTGGATACG chrIII:5719954-5720034 57 6.71e-04 TCGATATCTA GCGCATTT CTCGATAACC chrI:6660246-6660326 22 6.71e-04 CGTGCGATTG GCGCATTT CACGCGCAGG chrI:6317315-6317395 39 7.19e-04 ATTTGAACAT CCGCGTTT TTGTCTATGT chrI:4583779-4583859 19 7.19e-04 CGTCTTCGAG GCGGCATA TCTTACTTAA chrI:5274307-5274387 1 7.19e-04 . CCGCGTTT TATTTACGAA chrIV:13154768-13154848 67 7.19e-04 AAATCGGTAT GCGCCTTG TAGTTA chrIII:3459373-3459453 26 7.67e-04 aataatgcaa gcgcgctc tattgaacaa chrV:4370287-4370367 1 7.67e-04 . gcgcgctc caacgaacga chrII:12739475-12739555 14 7.67e-04 ATTTTTTTGC GCGCGCTC ACAAGCCATT chrI:128312-128392 61 7.67e-04 CATTTTTTCG GCGCCGAA AATTTTCAAT chrI:3866586-3866666 50 8.38e-04 CCGCGCCCCC GCGCAAAA AATTTTGAAC chrV:4175773-4175853 72 9.04e-04 TAGCTTCGAA CCGCGAAA T chrIII:4098276-4098356 35 9.04e-04 GAAATTAATG GCGGGAGT TTTTCAGAAA chrIII:1831249-1831329 18 9.04e-04 tttaaatttc ccgccTAT TTTAACGCAA chrI:4185235-4185315 64 9.91e-04 CACCGCGGTG GCGGGAAG AAAAGAAGG chrIII:10877688-10877768 7 9.91e-04 TGTTTG GCGGGCTA CGGTAGTTTT chrV:20480904-20480984 40 1.08e-03 GAACAATACT GCGCCCAG TACTGCCCGT chrI:506300-506380 58 1.08e-03 GACCACTGCG CCGCGCAT CTGATTTCTC chrII:3554808-3554888 49 1.08e-03 TCTCAGTGGA GCGCACTT ACACCTCACT chrII:14125939-14126019 40 1.23e-03 TTTAAATTTC CCGCCaaa ttcgaatttt chrIII:11580676-11580756 54 1.23e-03 AATATTGATG GCGGCAGT TTAAATACTG chrIII:10721205-10721285 11 1.23e-03 AAAAGTGCGT GCGGCAGT GTTGCAACCA chrIII:11524242-11524322 44 1.23e-03 GGGTACGGTA GCGCGGTG GGTCTCGCCA chrIV:9067811-9067891 47 1.23e-03 atttgaattc ccgccaaa atgttttcaa chrIII:8985644-8985724 47 1.23e-03 ACCTATTTTG GCGGAAAT TCAAATTTAC chrI:12492548-12492628 18 1.23e-03 ATTCAAATTC CCGCCAAA AAATCCATAG chrI:364263-364343 16 1.30e-03 AAATTTCAAG GCGCGTGC ATCAAACTTT chrII:5456033-5456113 29 1.30e-03 TTTTGAATTG GCGCGTGC AGTACGGTAG chrIV:2642233-2642313 59 1.41e-03 TGCTGTTTTT CCGCCTAA AAAAATAAAT chrV:12184475-12184555 50 1.54e-03 GTCGTAAGTG GCGGATTT TCAAATAAAT chrIII:4489077-4489157 37 1.54e-03 CACGCGAAAC GCGCCAGC AACAATTTTT chrII:14480016-14480096 42 1.54e-03 TATCAGTGGA GCGCAGTT TCACCACGGA chrII:7863885-7863965 73 1.54e-03 cgcattctcc gcgccgag chrIII:9745694-9745774 23 1.65e-03 GATGTCACCT CCGCGGTT TGCAAGCAAT chrIII:4984853-4984933 42 1.74e-03 CACCAATTTG GCGGCGAA CCAGGTGAAA chrIII:12977759-12977839 44 1.84e-03 ATGAGAACTG GCGCCTGG CTGGACCCGG chrII:13732383-13732463 42 1.84e-03 TCAATATCAA GCGGAAAA TCAGTAAAAA chrII:1131296-1131376 12 1.91e-03 TTCAAATTTC CCGCCGAT TTAATGTTGC chrIV:11337176-11337256 37 1.91e-03 ATTTTTTCGC GCGCGCGC GCCGTGAATA chrII:10935501-10935581 5 1.91e-03 gggc ccgcgttc caagcgagac chrI:12489266-12489346 19 2.05e-03 TTCAAATTTT CCGCCAAC CGCATGTCGC chrIV:807262-807342 43 2.05e-03 ACACGCGCCT GCGGATAA TCGGAGTGTC chrII:15208324-15208404 48 2.18e-03 TTCGGTGCTT GCGGACTT GCATACCGTA chrV:15395477-15395557 59 2.28e-03 CAAATACACC CCGCGAGA CCCACCAAGA chrI:7056621-7056701 30 2.36e-03 atctttaaag gcgcacac ctttctgcTT chrV:11917341-11917421 32 2.36e-03 AATCCTAAAG GCGCACAC ACAAAAAGGT chrI:9988370-9988450 64 2.36e-03 TTGCATGGAA GCGGGAGG ACAATTGAA chrV:19645750-19645830 6 2.36e-03 atttc ccgcctag aactgacttt chrIII:2111512-2111592 23 2.36e-03 tttgaatttc ccggcaaa aaatattcga chrIII:8446196-8446276 44 2.43e-03 AGAGTTCAAT CCGGCATA TTGAATAGCT chrV:18086417-18086497 11 2.50e-03 TCAAAATGCG CCGCCGAA TTCGAAAAAA chrIII:3726618-3726698 22 2.63e-03 GTGGTTTTTC GCGGCGAG ACCTACACAT chrIV:3132358-3132438 13 2.63e-03 TGTTCGCGCC GCGGCGAG TACGGTGTGC chrI:12507888-12507968 10 3.15e-03 GATTTAAAG GCGCATGC CTAAATATTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCSWWT MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:7477857-7477937 1e-05 72_[+1] chrIV:5469908-5469988 1e-05 60_[+1]_12 chrV:5996257-5996337 1e-05 70_[+1]_2 chrIV:17273872-17273952 1e-05 69_[+1]_3 chrII:11968422-11968502 1e-05 59_[+1]_13 chrIII:3171569-3171649 2.1e-05 64_[+1]_8 chrIII:5727932-5728012 2.1e-05 48_[+1]_24 chrI:13310795-13310875 2.1e-05 55_[+1]_17 chrII:12284221-12284301 2.1e-05 57_[+1]_15 chrI:12491137-12491217 2.1e-05 47_[+1]_25 chrII:13722930-13723010 3.2e-05 61_[+1]_11 chrIII:12377440-12377520 4.2e-05 12_[+1]_60 chrI:12733014-12733094 4.2e-05 7_[+1]_65 chrIV:2902120-2902200 4.2e-05 46_[+1]_26 chrI:13487571-13487651 4.2e-05 43_[+1]_29 chrIII:3309888-3309968 4.2e-05 34_[+1]_38 chrV:9382689-9382769 4.2e-05 38_[+1]_34 chrIV:9403951-9404031 4.2e-05 14_[+1]_58 chrIII:3723905-3723985 4.2e-05 49_[+1]_23 chrIV:14780685-14780765 4.2e-05 1_[+1]_71 chrIII:4095599-4095679 4.2e-05 42_[+1]_30 chrIV:13247914-13247994 4.2e-05 69_[+1]_3 chrII:9938983-9939063 4.2e-05 44_[+1]_28 chrI:5300547-5300627 4.2e-05 59_[+1]_13 chrI:13338276-13338356 4.2e-05 7_[+1]_65 chrV:6043445-6043525 5.3e-05 18_[+1]_54 chrII:14234522-14234602 5.3e-05 66_[+1]_6 chrV:4754223-4754303 6.3e-05 1_[+1]_71 chrII:11782676-11782756 8.4e-05 61_[+1]_11 chrV:4890123-4890203 8.4e-05 49_[+1]_23 chrIV:13029138-13029218 8.4e-05 25_[+1]_47 chrI:9585234-9585314 8.4e-05 41_[+1]_31 chrI:7554741-7554821 8.4e-05 72_[+1] chrIV:7796859-7796939 8.4e-05 62_[+1]_10 chrV:3578948-3579028 8.4e-05 61_[+1]_11 chrI:14734795-14734875 8.4e-05 35_[+1]_37 chrIV:9778194-9778274 8.4e-05 71_[+1]_1 chrI:5138046-5138126 8.4e-05 64_[+1]_8 chrI:519976-520056 8.4e-05 65_[+1]_7 chrIII:12819322-12819402 8.4e-05 5_[+1]_67 chrIV:842235-842315 8.4e-05 23_[+1]_49 chrI:3608352-3608432 8.4e-05 54_[+1]_18 chrV:3204620-3204700 0.0001 40_[+1]_32 chrIII:10562051-10562131 0.0001 69_[+1]_3 chrIV:9368018-9368098 0.0001 42_[+1]_30 chrV:7199238-7199318 0.0001 70_[+1]_2 chrIII:12457400-12457480 0.0001 70_[+1]_2 chrII:7880555-7880635 0.0001 21_[+1]_51 chrIV:829850-829930 0.0001 38_[+1]_34 chrIII:12225436-12225516 0.0001 61_[+1]_11 chrIV:5666800-5666880 0.0001 43_[+1]_29 chrV:14457231-14457311 0.0001 51_[+1]_21 chrIII:10442726-10442806 0.0001 37_[+1]_35 chrIV:12154429-12154509 0.0001 51_[+1]_21 chrV:1152880-1152960 0.0001 21_[+1]_51 chrIII:3390307-3390387 0.0001 12_[+1]_60 chrIII:11290027-11290107 0.0001 63_[+1]_9 chrIII:12426727-12426807 0.0001 25_[+1]_47 chrII:14245036-14245116 0.0001 69_[+1]_3 chrI:11580308-11580388 0.0001 64_[+1]_8 chrIV:9589249-9589329 0.0001 50_[+1]_22 chrII:14247370-14247450 0.0001 5_[+1]_67 chrII:9647606-9647686 0.0001 55_[+1]_17 chrV:969139-969219 0.0001 6_[+1]_66 chrIV:2783367-2783447 0.0001 50_[+1]_22 chrIV:379740-379820 0.0001 69_[+1]_3 chrIV:7548374-7548454 0.00012 39_[+1]_33 chrIII:11565752-11565832 0.00012 58_[+1]_14 chrI:4765585-4765665 0.00012 25_[+1]_47 chrI:3198991-3199071 0.00012 30_[+1]_42 chrIII:13755860-13755940 0.00012 14_[+1]_58 chrIII:9617089-9617169 0.00014 14_[+1]_58 chrIV:4447528-4447608 0.00014 15_[+1]_57 chrIII:4176356-4176436 0.00014 61_[+1]_11 chrV:2089938-2090018 0.00014 64_[+1]_8 chrI:2754827-2754907 0.00015 58_[+1]_14 chrIII:5503804-5503884 0.00015 16_[+1]_56 chrI:534292-534372 0.00017 54_[+1]_18 chrIV:280648-280728 0.00017 54_[+1]_18 chrV:6593853-6593933 0.00017 70_[+1]_2 chrIII:3311782-3311862 0.00017 44_[+1]_28 chrI:12513593-12513673 0.00017 70_[+1]_2 chrIII:9001629-9001709 0.00017 46_[+1]_26 chrIV:2677847-2677927 0.00017 61_[+1]_11 chrII:7353206-7353286 0.00017 53_[+1]_19 chrII:15025266-15025346 0.00017 64_[+1]_8 chrV:6793130-6793210 0.00017 53_[+1]_19 chrIII:1428594-1428674 0.00017 22_[+1]_50 chrV:16356946-16357026 0.00017 54_[+1]_18 chrIII:9794109-9794189 0.0002 14_[+1]_58 chrII:7599104-7599184 0.0002 51_[+1]_21 chrIII:2134087-2134167 0.0002 53_[+1]_19 chrIII:2858503-2858583 0.0002 62_[+1]_10 chrII:8276225-8276305 0.00024 46_[+1]_26 chrIV:6421339-6421419 0.00024 20_[+1]_52 chrIII:6946622-6946702 0.00028 72_[+1] chrI:6513885-6513965 0.00028 53_[+1]_19 chrII:4471110-4471190 0.00028 39_[+1]_33 chrI:3368662-3368742 0.00028 32_[+1]_40 chrII:10948802-10948882 0.00028 11_[+1]_61 chrI:5113903-5113983 0.00031 51_[+1]_21 chrII:12880568-12880648 0.00031 14_[+1]_58 chrII:6198653-6198733 0.00031 25_[+1]_47 chrV:5596553-5596633 0.00031 46_[+1]_26 chrI:347321-347401 0.00031 64_[+1]_8 chrIII:9776085-9776165 0.00031 38_[+1]_34 chrI:5619281-5619361 0.00031 16_[+1]_56 chrII:13156247-13156327 0.00031 55_[+1]_17 chrII:14410935-14411015 0.00035 13_[+1]_59 chrIV:13512343-13512423 0.00039 63_[+1]_9 chrIV:2311724-2311804 0.00039 7_[+1]_65 chrIII:5663676-5663756 0.00039 65_[+1]_7 chrII:7664000-7664080 0.00039 38_[+1]_34 chrIII:7085067-7085147 0.00039 38_[+1]_34 chrIII:1429429-1429509 0.00039 65_[+1]_7 chrIII:1534582-1534662 0.00039 63_[+1]_9 chrI:6369865-6369945 0.00047 42_[+1]_30 chrIV:3212088-3212168 0.00047 44_[+1]_28 chrV:17859214-17859294 0.00054 36_[+1]_36 chrIII:7060849-7060929 0.00054 70_[+1]_2 chrI:6467657-6467737 0.00054 49_[+1]_23 chrII:1369487-1369567 0.00054 8_[+1]_64 chrII:1130376-1130456 0.00054 52_[+1]_20 chrIV:1177817-1177897 0.00067 52_[+1]_20 chrII:11726615-11726695 0.00067 63_[+1]_9 chrI:12509901-12509981 0.00067 42_[+1]_30 chrII:10884561-10884641 0.00067 50_[+1]_22 chrIII:5719954-5720034 0.00067 56_[+1]_16 chrI:6660246-6660326 0.00067 21_[+1]_51 chrI:6317315-6317395 0.00072 38_[+1]_34 chrI:4583779-4583859 0.00072 18_[+1]_54 chrI:5274307-5274387 0.00072 [+1]_72 chrIV:13154768-13154848 0.00072 66_[+1]_6 chrIII:3459373-3459453 0.00077 25_[+1]_47 chrV:4370287-4370367 0.00077 [+1]_72 chrII:12739475-12739555 0.00077 13_[+1]_59 chrI:128312-128392 0.00077 60_[+1]_12 chrI:3866586-3866666 0.00084 49_[+1]_23 chrV:4175773-4175853 0.0009 71_[+1]_1 chrIII:4098276-4098356 0.0009 34_[+1]_38 chrIII:1831249-1831329 0.0009 17_[+1]_55 chrI:4185235-4185315 0.00099 63_[+1]_9 chrIII:10877688-10877768 0.00099 6_[+1]_66 chrV:20480904-20480984 0.0011 39_[+1]_33 chrI:506300-506380 0.0011 57_[+1]_15 chrII:3554808-3554888 0.0011 48_[+1]_24 chrII:14125939-14126019 0.0012 39_[+1]_33 chrIII:11580676-11580756 0.0012 53_[+1]_19 chrIII:10721205-10721285 0.0012 10_[+1]_62 chrIII:11524242-11524322 0.0012 43_[+1]_29 chrIV:9067811-9067891 0.0012 46_[+1]_26 chrIII:8985644-8985724 0.0012 46_[+1]_26 chrI:12492548-12492628 0.0012 17_[+1]_55 chrI:364263-364343 0.0013 15_[+1]_57 chrII:5456033-5456113 0.0013 28_[+1]_44 chrIV:2642233-2642313 0.0014 58_[+1]_14 chrV:12184475-12184555 0.0015 49_[+1]_23 chrIII:4489077-4489157 0.0015 36_[+1]_36 chrII:14480016-14480096 0.0015 41_[+1]_31 chrII:7863885-7863965 0.0015 72_[+1] chrIII:9745694-9745774 0.0017 22_[+1]_50 chrIII:4984853-4984933 0.0017 41_[+1]_31 chrIII:12977759-12977839 0.0018 43_[+1]_29 chrII:13732383-13732463 0.0018 41_[+1]_31 chrII:1131296-1131376 0.0019 11_[+1]_61 chrIV:11337176-11337256 0.0019 36_[+1]_36 chrII:10935501-10935581 0.0019 4_[+1]_68 chrI:12489266-12489346 0.002 18_[+1]_54 chrIV:807262-807342 0.002 42_[+1]_30 chrII:15208324-15208404 0.0022 47_[+1]_25 chrV:15395477-15395557 0.0023 58_[+1]_14 chrI:7056621-7056701 0.0024 29_[+1]_43 chrV:11917341-11917421 0.0024 31_[+1]_41 chrI:9988370-9988450 0.0024 63_[+1]_9 chrV:19645750-19645830 0.0024 5_[+1]_67 chrIII:2111512-2111592 0.0024 22_[+1]_50 chrIII:8446196-8446276 0.0024 43_[+1]_29 chrV:18086417-18086497 0.0025 10_[+1]_62 chrIII:3726618-3726698 0.0026 21_[+1]_51 chrIV:3132358-3132438 0.0026 12_[+1]_60 chrI:12507888-12507968 0.0032 9_[+1]_63 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCSWWT MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCGCSWWT width=8 seqs=181 chrIV:7477857-7477937 ( 73) GCGCGAAT 1 chrIV:5469908-5469988 ( 61) GCGCGAAT 1 chrV:5996257-5996337 ( 71) GCGCGAAT 1 chrIV:17273872-17273952 ( 70) GCGCGAAT 1 chrII:11968422-11968502 ( 60) GCGCGAAT 1 chrIII:3171569-3171649 ( 65) GCGCGATT 1 chrIII:5727932-5728012 ( 49) GCGCGATT 1 chrI:13310795-13310875 ( 56) GCGCGATT 1 chrII:12284221-12284301 ( 58) GCGCGATT 1 chrI:12491137-12491217 ( 48) GCGCGATT 1 chrII:13722930-13723010 ( 62) GCGCGTAT 1 chrIII:12377440-12377520 ( 13) GCGCGTTT 1 chrI:12733014-12733094 ( 8) GCGCGTTT 1 chrIV:2902120-2902200 ( 47) GCGCGTTT 1 chrI:13487571-13487651 ( 44) GCGCGTTT 1 chrIII:3309888-3309968 ( 35) GCGCGTTT 1 chrV:9382689-9382769 ( 39) GCGCGTTT 1 chrIV:9403951-9404031 ( 15) GCGCGTTT 1 chrIII:3723905-3723985 ( 50) GCGCGTTT 1 chrIV:14780685-14780765 ( 2) GCGCGTTT 1 chrIII:4095599-4095679 ( 43) GCGCGTTT 1 chrIV:13247914-13247994 ( 70) GCGCGTTT 1 chrII:9938983-9939063 ( 45) GCGCGTTT 1 chrI:5300547-5300627 ( 60) GCGCGTTT 1 chrI:13338276-13338356 ( 8) GCGCGTTT 1 chrV:6043445-6043525 ( 19) GCGCCAAT 1 chrII:14234522-14234602 ( 67) GCGCCAAT 1 chrV:4754223-4754303 ( 2) GCGCCATT 1 chrII:11782676-11782756 ( 62) GCGCGAAA 1 chrV:4890123-4890203 ( 50) GCGCGAAA 1 chrIV:13029138-13029218 ( 26) GCGCGAAA 1 chrI:9585234-9585314 ( 42) GCGCGAAA 1 chrI:7554741-7554821 ( 73) GCGCGAAA 1 chrIV:7796859-7796939 ( 63) GCGCGAAA 1 chrV:3578948-3579028 ( 62) GCGCGAAA 1 chrI:14734795-14734875 ( 36) GCGCGAAA 1 chrIV:9778194-9778274 ( 72) GCGCGAAA 1 chrI:5138046-5138126 ( 65) GCGCGAAA 1 chrI:519976-520056 ( 66) GCGCGAAA 1 chrIII:12819322-12819402 ( 6) GCGCGAAA 1 chrIV:842235-842315 ( 24) GCGCGAAA 1 chrI:3608352-3608432 ( 55) GCGCGAAA 1 chrV:3204620-3204700 ( 41) GCGCCTTT 1 chrIII:10562051-10562131 ( 70) GCGCCTTT 1 chrIV:9368018-9368098 ( 43) GCGCCTTT 1 chrV:7199238-7199318 ( 71) GCGCCTTT 1 chrIII:12457400-12457480 ( 71) GCGCCTTT 1 chrII:7880555-7880635 ( 22) GCGCCTTT 1 chrIV:829850-829930 ( 39) GCGCCTTT 1 chrIII:12225436-12225516 ( 62) GCGCCTTT 1 chrIV:5666800-5666880 ( 44) GCGCCTTT 1 chrV:14457231-14457311 ( 52) GCGCCTTT 1 chrIII:10442726-10442806 ( 38) GCGCCTTT 1 chrIV:12154429-12154509 ( 52) GCGCCTTT 1 chrV:1152880-1152960 ( 22) GCGCCTTT 1 chrIII:3390307-3390387 ( 13) GCGCCTTT 1 chrIII:11290027-11290107 ( 64) GCGCCTTT 1 chrIII:12426727-12426807 ( 26) GCGCCTTT 1 chrII:14245036-14245116 ( 70) GCGCCTTT 1 chrI:11580308-11580388 ( 65) GCGCCTTT 1 chrIV:9589249-9589329 ( 51) GCGCCTTT 1 chrII:14247370-14247450 ( 6) GCGCCTTT 1 chrII:9647606-9647686 ( 56) GCGCCTTT 1 chrV:969139-969219 ( 7) GCGCCTTT 1 chrIV:2783367-2783447 ( 51) GCGCCTTT 1 chrIV:379740-379820 ( 70) GCGCCTTT 1 chrIV:7548374-7548454 ( 40) GCGCGCAT 1 chrIII:11565752-11565832 ( 59) GCGCGCAT 1 chrI:4765585-4765665 ( 26) GCGCGTAA 1 chrI:3198991-3199071 ( 31) GCGCGTAA 1 chrIII:13755860-13755940 ( 15) GCGCGCAT 1 chrIII:9617089-9617169 ( 15) GCGCGCTT 1 chrIV:4447528-4447608 ( 16) GCGCGCTT 1 chrIII:4176356-4176436 ( 62) GCGCGCTT 1 chrV:2089938-2090018 ( 65) GCGCGCTT 1 chrI:2754827-2754907 ( 59) GCGCCAAA 1 chrIII:5503804-5503884 ( 17) GCGCCAAA 1 chrI:534292-534372 ( 55) GCGGGAAT 1 chrIV:280648-280728 ( 55) GCGGGAAT 1 chrV:6593853-6593933 ( 71) GCGGGAAT 1 chrIII:3311782-3311862 ( 45) GCGGGAAT 1 chrI:12513593-12513673 ( 71) GCGGGAAT 1 chrIII:9001629-9001709 ( 47) GCGGGAAT 1 chrIV:2677847-2677927 ( 62) GCGGGAAT 1 chrII:7353206-7353286 ( 54) GCGGGAAT 1 chrII:15025266-15025346 ( 65) GCGGGAAT 1 chrV:6793130-6793210 ( 54) GCGGGAAT 1 chrIII:1428594-1428674 ( 23) GCGGGAAT 1 chrV:16356946-16357026 ( 55) GCGGGAAT 1 chrIII:9794109-9794189 ( 15) GCGCCTAA 1 chrII:7599104-7599184 ( 52) GCGGGATT 1 chrIII:2134087-2134167 ( 54) GCGCCTAA 1 chrIII:2858503-2858583 ( 63) GCGGGATT 1 chrII:8276225-8276305 ( 47) GCGCCCTT 1 chrIV:6421339-6421419 ( 21) GCGCCTTA 1 chrIII:6946622-6946702 ( 73) GCGCGAGT 1 chrI:6513885-6513965 ( 54) GCGCGAGT 1 chrII:4471110-4471190 ( 40) GCGGGTTT 1 chrI:3368662-3368742 ( 33) GCGCGCAA 1 chrII:10948802-10948882 ( 12) GCGCGCAA 1 chrI:5113903-5113983 ( 52) GCGCGAAG 1 chrII:12880568-12880648 ( 15) GCGCGCTA 1 chrII:6198653-6198733 ( 26) GCGCGCTA 1 chrV:5596553-5596633 ( 47) GCGGCAAT 1 chrI:347321-347401 ( 65) GCGCGAAG 1 chrIII:9776085-9776165 ( 39) GCGGCAAT 1 chrI:5619281-5619361 ( 17) GCGCGAAG 1 chrII:13156247-13156327 ( 56) GCGGCAAT 1 chrII:14410935-14411015 ( 14) GCGCGATG 1 chrIV:13512343-13512423 ( 64) GCGCCGAT 1 chrIV:2311724-2311804 ( 8) GCGGGAAA 1 chrIII:5663676-5663756 ( 66) GCGGGAAA 1 chrII:7664000-7664080 ( 39) GCGGGAAA 1 chrIII:7085067-7085147 ( 39) GCGGGAAA 1 chrIII:1429429-1429509 ( 66) GCGGGAAA 1 chrIII:1534582-1534662 ( 64) GCGGGAAA 1 chrI:6369865-6369945 ( 43) GCGCCAAC 1 chrIV:3212088-3212168 ( 45) GCGCCGTT 1 chrV:17859214-17859294 ( 37) GCGCGGAA 1 chrIII:7060849-7060929 ( 71) CCGCGAAT 1 chrI:6467657-6467737 ( 50) GCGCGGAA 1 chrII:1369487-1369567 ( 9) GCGCAATT 1 chrII:1130376-1130456 ( 53) GCGCAATT 1 chrIV:1177817-1177897 ( 53) GCGCATTT 1 chrII:11726615-11726695 ( 64) GCGCCTTC 1 chrI:12509901-12509981 ( 43) GCGCATTT 1 chrII:10884561-10884641 ( 51) GCGCCTTC 1 chrIII:5719954-5720034 ( 57) GCGCATTT 1 chrI:6660246-6660326 ( 22) GCGCATTT 1 chrI:6317315-6317395 ( 39) CCGCGTTT 1 chrI:4583779-4583859 ( 19) GCGGCATA 1 chrI:5274307-5274387 ( 1) CCGCGTTT 1 chrIV:13154768-13154848 ( 67) GCGCCTTG 1 chrIII:3459373-3459453 ( 26) GCGCGCTC 1 chrV:4370287-4370367 ( 1) GCGCGCTC 1 chrII:12739475-12739555 ( 14) GCGCGCTC 1 chrI:128312-128392 ( 61) GCGCCGAA 1 chrI:3866586-3866666 ( 50) GCGCAAAA 1 chrV:4175773-4175853 ( 72) CCGCGAAA 1 chrIII:4098276-4098356 ( 35) GCGGGAGT 1 chrIII:1831249-1831329 ( 18) CCGCCTAT 1 chrI:4185235-4185315 ( 64) GCGGGAAG 1 chrIII:10877688-10877768 ( 7) GCGGGCTA 1 chrV:20480904-20480984 ( 40) GCGCCCAG 1 chrI:506300-506380 ( 58) CCGCGCAT 1 chrII:3554808-3554888 ( 49) GCGCACTT 1 chrII:14125939-14126019 ( 40) CCGCCAAA 1 chrIII:11580676-11580756 ( 54) GCGGCAGT 1 chrIII:10721205-10721285 ( 11) GCGGCAGT 1 chrIII:11524242-11524322 ( 44) GCGCGGTG 1 chrIV:9067811-9067891 ( 47) CCGCCAAA 1 chrIII:8985644-8985724 ( 47) GCGGAAAT 1 chrI:12492548-12492628 ( 18) CCGCCAAA 1 chrI:364263-364343 ( 16) GCGCGTGC 1 chrII:5456033-5456113 ( 29) GCGCGTGC 1 chrIV:2642233-2642313 ( 59) CCGCCTAA 1 chrV:12184475-12184555 ( 50) GCGGATTT 1 chrIII:4489077-4489157 ( 37) GCGCCAGC 1 chrII:14480016-14480096 ( 42) GCGCAGTT 1 chrII:7863885-7863965 ( 73) GCGCCGAG 1 chrIII:9745694-9745774 ( 23) CCGCGGTT 1 chrIII:4984853-4984933 ( 42) GCGGCGAA 1 chrIII:12977759-12977839 ( 44) GCGCCTGG 1 chrII:13732383-13732463 ( 42) GCGGAAAA 1 chrII:1131296-1131376 ( 12) CCGCCGAT 1 chrIV:11337176-11337256 ( 37) GCGCGCGC 1 chrII:10935501-10935581 ( 5) CCGCGTTC 1 chrI:12489266-12489346 ( 19) CCGCCAAC 1 chrIV:807262-807342 ( 43) GCGGATAA 1 chrII:15208324-15208404 ( 48) GCGGACTT 1 chrV:15395477-15395557 ( 59) CCGCGAGA 1 chrI:7056621-7056701 ( 30) GCGCACAC 1 chrV:11917341-11917421 ( 32) GCGCACAC 1 chrI:9988370-9988450 ( 64) GCGGGAGG 1 chrV:19645750-19645830 ( 6) CCGCCTAG 1 chrIII:2111512-2111592 ( 23) CCGGCAAA 1 chrIII:8446196-8446276 ( 44) CCGGCATA 1 chrV:18086417-18086497 ( 11) CCGCCGAA 1 chrIII:3726618-3726698 ( 22) GCGGCGAG 1 chrIV:3132358-3132438 ( 13) GCGGCGAG 1 chrI:12507888-12507968 ( 10) GCGCATGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCSWWT MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 7.69912 E= 8.9e-097 -1414 -100 206 -1414 -1414 225 -1414 -1414 -1414 -1414 222 -1414 -1414 188 8 -1414 -160 75 136 -1414 63 -73 -147 29 75 -1414 -158 63 -7 -135 -147 97 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCSWWT MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 181 E= 8.9e-097 0.000000 0.104972 0.895028 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.773481 0.226519 0.000000 0.093923 0.353591 0.552486 0.000000 0.441989 0.127072 0.077348 0.353591 0.480663 0.000000 0.071823 0.447514 0.270718 0.082873 0.077348 0.569061 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCSWWT MEME-1 regular expression -------------------------------------------------------------------------------- GCG[CG][GC][AT][AT][TA] -------------------------------------------------------------------------------- Time 9.45 secs. ******************************************************************************** ******************************************************************************** MOTIF TACNGTAR MEME-2 width = 8 sites = 84 llr = 656 E-value = 6.7e-042 ******************************************************************************** -------------------------------------------------------------------------------- Motif TACNGTAR MEME-2 Description -------------------------------------------------------------------------------- Simplified A :a:2::a2 pos.-specific C 1:a3:::2 probability G :::2a::4 matrix T 9::2:a:2 bits 2.2 * * 2.0 * * 1.8 ** *** 1.6 ** *** Relative 1.3 ** *** Entropy 1.1 *** *** (11.3 bits) 0.9 *** *** 0.7 *** *** 0.4 *** *** 0.2 *** **** 0.0 -------- Multilevel TACCGTAG consensus G A sequence T C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TACNGTAR MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIV:7509040-7509120 1 1.41e-05 . TACCGTAG TCTCGTTTCG chrII:14410935-14411015 66 1.41e-05 AAATGGCTGT TACCGTAG TTGTTTA chrI:13310795-13310875 5 1.41e-05 ACTC TACCGTAG CCCGGTTACT chrI:11970066-11970146 3 1.41e-05 AC TACCGTAG TTAGCTTTTT chrI:14734795-14734875 61 1.41e-05 tagcgaTGTC TACCGTAG TATTGAATAA chrII:11968422-11968502 15 1.41e-05 TCACCACGAC TACCGTAG CCCGTGGAGC chrII:15025266-15025346 51 1.41e-05 AAACGACTGC TACCGTAG TCCTTGGCGG chrIII:3726618-3726698 53 1.41e-05 AAATGGGTGT TACCGTAG TTTAAAAAAA chrI:347321-347401 73 2.84e-05 AGGCGCGAAG TACGGTAG chrV:5996257-5996337 55 2.84e-05 GCCTTCAGAT TACGGTAG CGCGTATCGC chrII:10884561-10884641 65 2.84e-05 CTTCTGTGGA TACGGTAG CGCACATA chrI:506300-506380 27 2.84e-05 GCCTTTAAGG TACGGTAG CTCTTCGTGG chrI:519976-520056 41 2.84e-05 CGCGCCGAAG TACGGTAG GTCCCGCATT chrII:14247370-14247450 66 2.84e-05 TCCGGGGGTA TACGGTAG TAGCACT chrII:5456033-5456113 39 2.84e-05 GCGCGTGCAG TACGGTAG CTGATGTTGA chrI:3608352-3608432 21 2.84e-05 GTCGTATGGG TACGGTAG ACAAACCTGC chrI:3931885-3931965 32 6.15e-05 CATTATCTTT TACCGTAC CTTTGATCTT chrIV:12831777-12831857 36 6.15e-05 CACACAAAAG TACTGTAG CTGGTGAATT chrI:5113903-5113983 28 6.15e-05 GTTTCGGGAA TACTGTAG TCGAAGAGAC chrII:11782676-11782756 7 6.15e-05 TCCAAT TACCGTAC CCAGTTAGCG chrII:12739475-12739555 58 6.15e-05 TTTTCCTGGC TACTGTAG TTCACAAAAT chrV:4890123-4890203 2 6.15e-05 C TACCGTAC CCAGTCAGTG chrIV:13512343-13512423 32 6.15e-05 CGAAATAAAG TACTGTAG AATTTAAAGG chrIII:2134087-2134167 11 6.15e-05 TATTCTGGGG TACTGTAG TTCGCATTTT chrII:11578016-11578096 10 6.15e-05 CGAGAGGAC TACTGTAG TTTTTAAAGG chrV:3578948-3579028 40 6.15e-05 CGTACTCGCC TACCGTAC CCTCGGTGTT chrIV:8538782-8538862 64 6.15e-05 CGAGGAGGGT TACTGTAG CGAGAATGT chrIII:7060849-7060929 41 6.15e-05 TATTTTGTGG TACTGTAG TACTCGTTTC chrI:128312-128392 25 6.15e-05 AAATGAGTGA TACCGTAC TCTCTCTGTT chrIV:13154768-13154848 23 6.15e-05 ataattgaat taCTGTAG TGATCGTTGC chrI:3198991-3199071 65 6.15e-05 ACAAAAGTCT TACTGTAG GTTTTAAA chrIV:3212088-3212168 14 6.15e-05 TGTTCCAATC TACCGTAC CCCTAGTCTC chrI:9518931-9519011 59 6.15e-05 CAACGCAAAT TACCGTAC TTCAAAAATT chrIV:4760841-4760921 25 6.15e-05 TTCTCAAGAC TACCGTAC TCTTTAAAGA chrI:5619281-5619361 47 6.15e-05 GTTACCGGGT TACTGTAG TACGGGACCC chrIII:2858503-2858583 25 6.15e-05 AAATGAGGGT TACTGTAG AAGTACACCG chrI:9287216-9287296 37 6.15e-05 CTTTTATGGG TACTGTAG TGGGGGTGTG chrII:11573091-11573171 38 6.15e-05 AACTGTGGGT TACTGTAG TCGTTGCGAG chrII:10935501-10935581 52 9.91e-05 acccaaatgg taccgtaa tccgtttaaa chrII:15208324-15208404 59 9.91e-05 CGGACTTGCA TACCGTAA CCCACGCGCA chrIII:3390307-3390387 26 9.91e-05 CCTTTAAATT TACAGTAG GAAAATTAGA chrIII:5663676-5663756 32 1.13e-04 AACAGATGGG TACGGTAC GCATtcgcgg chrIII:8675134-8675214 8 1.51e-04 TGAAAAT TACCGTAT ACTCCTACAA chrI:8309283-8309363 64 1.51e-04 TTTAATTTAC TACGGTAA TTACTGTTA chrIII:8763264-8763344 29 1.51e-04 TTTTAAAAAT TACCGTAT CCACCTCAAA chrII:11726615-11726695 22 1.51e-04 TAAAGTTGGG TACGGTAA TCGTGGCGAG chrI:6369865-6369945 31 1.51e-04 CGCCGCGAGA TACGGTAA GCGAGCGCCA chrI:364263-364343 63 1.51e-04 ATGTAACAAG TACGGTAA GAGTGCGCGC chrII:7880555-7880635 32 1.51e-04 GCGCCTTTAA TACCGTAT CCTCTTCACT chrI:5300547-5300627 32 1.70e-04 GTGTTGGATG TACTGTAC GCAAACACAT chrIV:2783367-2783447 65 1.70e-04 CTTTAAAGCT TACTGTAC ATTCCATT chrIV:6421339-6421419 35 2.14e-04 CTTAAAATTC TACAGTAC TTTATTTCAT chrIV:11337176-11337256 65 2.14e-04 ACAAACGTGG TACTGTAA TCGTTGCG chrIII:5727932-5728012 22 2.14e-04 TCGCAACGAT TACAGTAC CCCACTGAAA chrI:6513885-6513965 17 2.14e-04 GTTCGTCCTC TACAGTAC TCCCGCGCGG chrIII:4792705-4792785 40 2.14e-04 TTCGAAAGGT TACTGTAA CAGTCATTTG chrIII:1831249-1831329 63 2.14e-04 CTTTTCAAGC TACAGTAC CCTCCGGATT chrII:8940714-8940794 44 2.34e-04 TTTGGAGGTG TACGGTAT TCCACTTGAG chrV:3204620-3204700 53 2.34e-04 GCCTTTTTAC TACGGTAT TGCTAGTTTT chrV:14457231-14457311 70 2.34e-04 AAAGAAGTAG TACGGTAT GCA chrI:3866586-3866666 20 2.34e-04 GTATCAAGTG TACGGTAT TCGTGGTGAG chrV:969139-969219 24 2.34e-04 TAAGAAAAGT TACGGTAT CATTTTTTAG chrV:6496761-6496841 66 2.69e-04 GCTCCTTTGT TACAGTAA CCGGTGG chrV:11917341-11917421 16 2.69e-04 GAAAATTATC TACAGTAA TCCTAAAGGC chrV:5717393-5717473 65 2.69e-04 TGCAGGTTCT TACAGTAA CCCGTTGT chrIV:829850-829930 53 2.69e-04 CTTTAAGTTC TACAGTAA CTTTTTCATG chrI:5791992-5792072 55 2.69e-04 GAACATGTGC TACAGTAA TTCTTTCGTA chrIV:12154429-12154509 65 2.69e-04 CCTTTGAAAC TACAGTAA CCATTAAA chrV:11279712-11279792 7 2.69e-04 AATTTC TACAGTAA CCATTCAAAG chrIV:5666800-5666880 64 2.95e-04 ACGCAGAGAT TACTGTAT TTGGAAAGt chrIII:4313204-4313284 17 2.95e-04 TAGTGTGAGA TACTGTAT TAAAGGAGCA chrI:7056621-7056701 12 3.31e-04 ACTCCCCaag tacagtat atctttaaag chrIII:4476939-4477019 64 3.31e-04 CAAGCTGGCG CACGGTAG AACAAGATG chrV:4376336-4376416 32 3.31e-04 TGCAGCCAGC TACAGTAT CTCAAAATCT chrIII:12575481-12575561 9 3.55e-04 TTAAAGGA CACCGTAC TATTTTTCAA chrIV:3132358-3132438 67 3.55e-04 CACCGTTGCG CACCGTAC CCGCGC chrI:2156755-2156835 55 3.83e-04 TTTCTGTTTC CACCGTAA TCTTTCAAAG chrIV:9778194-9778274 60 3.83e-04 ACAAATTGTA CACCGTAA TCGGGCGCGA chrIV:4447528-4447608 39 4.20e-04 GCAACCCTCG CACGGTAA AAAACGCGCG chrIII:3171569-3171649 48 4.20e-04 CGAAATCCGC CACCGTAT CCGTTTCTAG chrIV:7764465-7764545 20 4.80e-04 CTTCAAAACA AACCGTAG CCACGTCGTG chrV:4963827-4963907 56 4.80e-04 CTTAATCATC AACCGTAG TTCAGATCGT chrIV:6777408-6777488 21 5.13e-04 CAGACTCGTA CACAGTAA GCACTACATT chrIII:4489077-4489157 61 5.56e-04 TTTTCGCAGC GACCGTAG CTAATTTTAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TACNGTAR MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:7509040-7509120 1.4e-05 [+2]_72 chrII:14410935-14411015 1.4e-05 65_[+2]_7 chrI:13310795-13310875 1.4e-05 4_[+2]_68 chrI:11970066-11970146 1.4e-05 2_[+2]_70 chrI:14734795-14734875 1.4e-05 60_[+2]_12 chrII:11968422-11968502 1.4e-05 14_[+2]_58 chrII:15025266-15025346 1.4e-05 50_[+2]_22 chrIII:3726618-3726698 1.4e-05 52_[+2]_20 chrI:347321-347401 2.8e-05 72_[+2] chrV:5996257-5996337 2.8e-05 54_[+2]_18 chrII:10884561-10884641 2.8e-05 64_[+2]_8 chrI:506300-506380 2.8e-05 26_[+2]_46 chrI:519976-520056 2.8e-05 40_[+2]_32 chrII:14247370-14247450 2.8e-05 65_[+2]_7 chrII:5456033-5456113 2.8e-05 38_[+2]_34 chrI:3608352-3608432 2.8e-05 20_[+2]_52 chrI:3931885-3931965 6.2e-05 31_[+2]_41 chrIV:12831777-12831857 6.2e-05 35_[+2]_37 chrI:5113903-5113983 6.2e-05 27_[+2]_45 chrII:11782676-11782756 6.2e-05 6_[+2]_66 chrII:12739475-12739555 6.2e-05 57_[+2]_15 chrV:4890123-4890203 6.2e-05 1_[+2]_71 chrIV:13512343-13512423 6.2e-05 31_[+2]_41 chrIII:2134087-2134167 6.2e-05 10_[+2]_62 chrII:11578016-11578096 6.2e-05 9_[+2]_63 chrV:3578948-3579028 6.2e-05 39_[+2]_33 chrIV:8538782-8538862 6.2e-05 63_[+2]_9 chrIII:7060849-7060929 6.2e-05 40_[+2]_32 chrI:128312-128392 6.2e-05 24_[+2]_48 chrIV:13154768-13154848 6.2e-05 22_[+2]_50 chrI:3198991-3199071 6.2e-05 64_[+2]_8 chrIV:3212088-3212168 6.2e-05 13_[+2]_59 chrI:9518931-9519011 6.2e-05 58_[+2]_14 chrIV:4760841-4760921 6.2e-05 24_[+2]_48 chrI:5619281-5619361 6.2e-05 46_[+2]_26 chrIII:2858503-2858583 6.2e-05 24_[+2]_48 chrI:9287216-9287296 6.2e-05 36_[+2]_36 chrII:11573091-11573171 6.2e-05 37_[+2]_35 chrII:10935501-10935581 9.9e-05 51_[+2]_21 chrII:15208324-15208404 9.9e-05 58_[+2]_14 chrIII:3390307-3390387 9.9e-05 25_[+2]_47 chrIII:5663676-5663756 0.00011 31_[+2]_41 chrIII:8675134-8675214 0.00015 7_[+2]_65 chrI:8309283-8309363 0.00015 63_[+2]_9 chrIII:8763264-8763344 0.00015 28_[+2]_44 chrII:11726615-11726695 0.00015 21_[+2]_51 chrI:6369865-6369945 0.00015 30_[+2]_42 chrI:364263-364343 0.00015 62_[+2]_10 chrII:7880555-7880635 0.00015 31_[+2]_41 chrI:5300547-5300627 0.00017 31_[+2]_41 chrIV:2783367-2783447 0.00017 64_[+2]_8 chrIV:6421339-6421419 0.00021 34_[+2]_38 chrIV:11337176-11337256 0.00021 64_[+2]_8 chrIII:5727932-5728012 0.00021 21_[+2]_51 chrI:6513885-6513965 0.00021 16_[+2]_56 chrIII:4792705-4792785 0.00021 39_[+2]_33 chrIII:1831249-1831329 0.00021 62_[+2]_10 chrII:8940714-8940794 0.00023 43_[+2]_29 chrV:3204620-3204700 0.00023 52_[+2]_20 chrV:14457231-14457311 0.00023 69_[+2]_3 chrI:3866586-3866666 0.00023 19_[+2]_53 chrV:969139-969219 0.00023 23_[+2]_49 chrV:6496761-6496841 0.00027 65_[+2]_7 chrV:11917341-11917421 0.00027 15_[+2]_57 chrV:5717393-5717473 0.00027 64_[+2]_8 chrIV:829850-829930 0.00027 52_[+2]_20 chrI:5791992-5792072 0.00027 54_[+2]_18 chrIV:12154429-12154509 0.00027 64_[+2]_8 chrV:11279712-11279792 0.00027 6_[+2]_66 chrIV:5666800-5666880 0.0003 63_[+2]_9 chrIII:4313204-4313284 0.0003 16_[+2]_56 chrI:7056621-7056701 0.00033 11_[+2]_61 chrIII:4476939-4477019 0.00033 63_[+2]_9 chrV:4376336-4376416 0.00033 31_[+2]_41 chrIII:12575481-12575561 0.00036 8_[+2]_64 chrIV:3132358-3132438 0.00036 66_[+2]_6 chrI:2156755-2156835 0.00038 54_[+2]_18 chrIV:9778194-9778274 0.00038 59_[+2]_13 chrIV:4447528-4447608 0.00042 38_[+2]_34 chrIII:3171569-3171649 0.00042 47_[+2]_25 chrIV:7764465-7764545 0.00048 19_[+2]_53 chrV:4963827-4963907 0.00048 55_[+2]_17 chrIV:6777408-6777488 0.00051 20_[+2]_52 chrIII:4489077-4489157 0.00056 60_[+2]_12 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TACNGTAR MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TACNGTAR width=8 seqs=84 chrIV:7509040-7509120 ( 1) TACCGTAG 1 chrII:14410935-14411015 ( 66) TACCGTAG 1 chrI:13310795-13310875 ( 5) TACCGTAG 1 chrI:11970066-11970146 ( 3) TACCGTAG 1 chrI:14734795-14734875 ( 61) TACCGTAG 1 chrII:11968422-11968502 ( 15) TACCGTAG 1 chrII:15025266-15025346 ( 51) TACCGTAG 1 chrIII:3726618-3726698 ( 53) TACCGTAG 1 chrI:347321-347401 ( 73) TACGGTAG 1 chrV:5996257-5996337 ( 55) TACGGTAG 1 chrII:10884561-10884641 ( 65) TACGGTAG 1 chrI:506300-506380 ( 27) TACGGTAG 1 chrI:519976-520056 ( 41) TACGGTAG 1 chrII:14247370-14247450 ( 66) TACGGTAG 1 chrII:5456033-5456113 ( 39) TACGGTAG 1 chrI:3608352-3608432 ( 21) TACGGTAG 1 chrI:3931885-3931965 ( 32) TACCGTAC 1 chrIV:12831777-12831857 ( 36) TACTGTAG 1 chrI:5113903-5113983 ( 28) TACTGTAG 1 chrII:11782676-11782756 ( 7) TACCGTAC 1 chrII:12739475-12739555 ( 58) TACTGTAG 1 chrV:4890123-4890203 ( 2) TACCGTAC 1 chrIV:13512343-13512423 ( 32) TACTGTAG 1 chrIII:2134087-2134167 ( 11) TACTGTAG 1 chrII:11578016-11578096 ( 10) TACTGTAG 1 chrV:3578948-3579028 ( 40) TACCGTAC 1 chrIV:8538782-8538862 ( 64) TACTGTAG 1 chrIII:7060849-7060929 ( 41) TACTGTAG 1 chrI:128312-128392 ( 25) TACCGTAC 1 chrIV:13154768-13154848 ( 23) TACTGTAG 1 chrI:3198991-3199071 ( 65) TACTGTAG 1 chrIV:3212088-3212168 ( 14) TACCGTAC 1 chrI:9518931-9519011 ( 59) TACCGTAC 1 chrIV:4760841-4760921 ( 25) TACCGTAC 1 chrI:5619281-5619361 ( 47) TACTGTAG 1 chrIII:2858503-2858583 ( 25) TACTGTAG 1 chrI:9287216-9287296 ( 37) TACTGTAG 1 chrII:11573091-11573171 ( 38) TACTGTAG 1 chrII:10935501-10935581 ( 52) TACCGTAA 1 chrII:15208324-15208404 ( 59) TACCGTAA 1 chrIII:3390307-3390387 ( 26) TACAGTAG 1 chrIII:5663676-5663756 ( 32) TACGGTAC 1 chrIII:8675134-8675214 ( 8) TACCGTAT 1 chrI:8309283-8309363 ( 64) TACGGTAA 1 chrIII:8763264-8763344 ( 29) TACCGTAT 1 chrII:11726615-11726695 ( 22) TACGGTAA 1 chrI:6369865-6369945 ( 31) TACGGTAA 1 chrI:364263-364343 ( 63) TACGGTAA 1 chrII:7880555-7880635 ( 32) TACCGTAT 1 chrI:5300547-5300627 ( 32) TACTGTAC 1 chrIV:2783367-2783447 ( 65) TACTGTAC 1 chrIV:6421339-6421419 ( 35) TACAGTAC 1 chrIV:11337176-11337256 ( 65) TACTGTAA 1 chrIII:5727932-5728012 ( 22) TACAGTAC 1 chrI:6513885-6513965 ( 17) TACAGTAC 1 chrIII:4792705-4792785 ( 40) TACTGTAA 1 chrIII:1831249-1831329 ( 63) TACAGTAC 1 chrII:8940714-8940794 ( 44) TACGGTAT 1 chrV:3204620-3204700 ( 53) TACGGTAT 1 chrV:14457231-14457311 ( 70) TACGGTAT 1 chrI:3866586-3866666 ( 20) TACGGTAT 1 chrV:969139-969219 ( 24) TACGGTAT 1 chrV:6496761-6496841 ( 66) TACAGTAA 1 chrV:11917341-11917421 ( 16) TACAGTAA 1 chrV:5717393-5717473 ( 65) TACAGTAA 1 chrIV:829850-829930 ( 53) TACAGTAA 1 chrI:5791992-5792072 ( 55) TACAGTAA 1 chrIV:12154429-12154509 ( 65) TACAGTAA 1 chrV:11279712-11279792 ( 7) TACAGTAA 1 chrIV:5666800-5666880 ( 64) TACTGTAT 1 chrIII:4313204-4313284 ( 17) TACTGTAT 1 chrI:7056621-7056701 ( 12) TACAGTAT 1 chrIII:4476939-4477019 ( 64) CACGGTAG 1 chrV:4376336-4376416 ( 32) TACAGTAT 1 chrIII:12575481-12575561 ( 9) CACCGTAC 1 chrIV:3132358-3132438 ( 67) CACCGTAC 1 chrI:2156755-2156835 ( 55) CACCGTAA 1 chrIV:9778194-9778274 ( 60) CACCGTAA 1 chrIV:4447528-4447608 ( 39) CACGGTAA 1 chrIII:3171569-3171649 ( 48) CACCGTAT 1 chrIV:7764465-7764545 ( 20) AACCGTAG 1 chrV:4963827-4963907 ( 56) AACCGTAG 1 chrIV:6777408-6777488 ( 21) CACAGTAA 1 chrIII:4489077-4489157 ( 61) GACCGTAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TACNGTAR MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.06276 E= 6.7e-042 -358 -114 -417 158 181 -1304 -1304 -1304 -1304 225 -1304 -1304 -67 71 15 -28 -1304 -1304 222 -1304 -1304 -1304 -1304 179 181 -1304 -1304 -1304 -33 -6 96 -91 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TACNGTAR MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 84 E= 6.7e-042 0.023810 0.095238 0.011905 0.869048 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.178571 0.345238 0.238095 0.238095 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.226190 0.202381 0.416667 0.154762 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TACNGTAR MEME-2 regular expression -------------------------------------------------------------------------------- TAC[CGT]GTA[GAC] -------------------------------------------------------------------------------- Time 12.86 secs. ******************************************************************************** ******************************************************************************** MOTIF AWTTTVAA MEME-3 width = 8 sites = 162 llr = 1024 E-value = 9.0e-050 ******************************************************************************** -------------------------------------------------------------------------------- Motif AWTTTVAA MEME-3 Description -------------------------------------------------------------------------------- Simplified A 761::4aa pos.-specific C 1:::32:: probability G 11:::4:: matrix T 239a7::: bits 2.2 2.0 1.8 * * 1.6 * ** Relative 1.3 ** ** Entropy 1.1 *** ** (9.1 bits) 0.9 *** ** 0.7 **** ** 0.4 ***** ** 0.2 ******** 0.0 -------- Multilevel AATTTAAA consensus T CG sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AWTTTVAA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrII:8940714-8940794 22 3.46e-05 TTCAATGTTG AATTTGAA ATGTTTTGGA chrIII:3459373-3459453 58 3.46e-05 tcttggcggt aatttgaa tatgaaACTG chrI:6317315-6317395 28 3.46e-05 TTCACTCGCT AATTTGAA CATCCGCGTT chrI:12733014-12733094 48 3.46e-05 tttcgcgcga aatttgaa ttttcctgtg chrIV:2902120-2902200 13 3.46e-05 TGAAAATTCG AATTTGAA CACCCGCCGA chrI:9585234-9585314 55 3.46e-05 CGAAAATAGT AATTTGAA ATTGAATACG chrII:7599104-7599184 37 3.46e-05 GAAAAAAAAC AATTTGAA TTGTTGAGCG chrIII:9848744-9848824 42 3.46e-05 TCGTTTATCT AATTTGAA TTTCGCGCTA chrI:3409496-3409576 30 3.46e-05 TATCCTTTGG AATTTGAA TTCCCTCGGT chrV:6043445-6043525 8 3.46e-05 AAACTCG AATTTGAA CACGCGCCAA chrIII:7104197-7104277 11 3.46e-05 acaaaacaaa aATTTGAA TTTTCCCGCC chrII:3554808-3554888 27 3.46e-05 ATTTTACGAA AATTTGAA TATTTCTCAG chrIV:14780685-14780765 35 3.46e-05 CGGGCGCATT AATTTGAA ATCTGTTTTC chrIII:4098276-4098356 20 3.46e-05 TGCAGATCGT AATTTGAA ATTAATGGCG chrIII:13755860-13755940 58 3.46e-05 GATCTACAGA AATTTGAA TTTCAATCAC chrI:6660246-6660326 68 3.46e-05 AAAAAGCTCG AATTTGAA TTACC chrV:2089938-2090018 29 3.46e-05 cccgaactgc aatttgaa ttaccgccaa chrIV:9067811-9067891 36 3.46e-05 caaatattaa aatttgaa ttcccgccaa chrIII:2111512-2111592 42 3.46e-05 aatattcgaa aatttgaa tttacgTGGC chrI:2010549-2010629 71 3.46e-05 AATGGAGGGA AATTTGAA TT chrII:1130376-1130456 33 3.46e-05 AACGCGCTCC AATTTGAA TTTGTCATTA chrIII:1534582-1534662 12 3.46e-05 atcacctaaa aatttgaa ttcccgccga chrII:14125939-14126019 28 8.05e-05 TGTTTTTGAA AATTTAAA TTTCCCGCCa chrIV:13512343-13512423 40 8.05e-05 AGTACTGTAG AATTTAAA GGCGCATGTC chrV:1152880-1152960 60 8.05e-05 CATTTTTTCT AATTTAAA ATTTTGCGGC chrV:14133128-14133208 7 8.05e-05 AAAATT AATTTAAA AAAATGAGAT chrIII:3723905-3723985 68 8.05e-05 GCATTTGTAa aatttaaa tacat chrV:4376336-4376416 10 8.05e-05 AAAAATTCA AATTTAAA AGTTTGCAGC chrIII:4792705-4792785 19 8.05e-05 TATAAAAACT AATTTAAA TCTTTCGAAA chrIV:11953031-11953111 43 1.14e-04 TAACTTAAAT AATTTCAA ACTGCCGCTG chrV:15395477-15395557 44 1.14e-04 AACGGGGGGC AATTTCAA ATACACCCCG chrI:364263-364343 7 1.14e-04 TGCTTA AATTTCAA GGCGCGTGCA chrI:347321-347401 32 1.14e-04 CAATGGGTTA AATTTCAA GACTTTCCCA chrI:6513885-6513965 37 1.14e-04 CCGCGCGGCA AATTTCAA ATCTTTTGCG chrIII:3390307-3390387 65 1.14e-04 TTGAAAGTTT AATTTCAA AAAACTAA chrIII:7085067-7085147 59 1.14e-04 TTTACGTTTG AATTTCAA CCAGTGATTT chrI:9287216-9287296 59 1.14e-04 GGTGTGTTCA AATTTCAA ATCAATTCGA chrII:11573091-11573171 22 1.14e-04 GTTTTATTTA AATTTCAA CTGTGGGTTA chrI:12491137-12491217 73 1.14e-04 GATCGGCGGG AATTTCAA chrV:6593853-6593933 54 1.50e-04 GAAGGTTTCA ATTTTGAA TCACCACGCG chrII:15208324-15208404 18 1.50e-04 AAAAAATCAA ATTTTGAA CACGCGCCGG chrI:3866586-3866666 59 1.50e-04 CGCGCAAAAA ATTTTGAA CTTTTGCGGA chrIII:5719954-5720034 8 1.50e-04 CTAAAGA ATTTTGAA TTGCCTCCAA chrIII:5503804-5503884 6 1.50e-04 TAACT ATTTTGAA TTAGCGCCAA chrII:5456033-5456113 18 1.50e-04 TTGAAATTGT ATTTTGAA TTGGCGCGTG chrV:6793130-6793210 66 1.50e-04 GGGAATTTAA ATTTTGAA AGTTACA chrV:19673470-19673550 65 2.21e-04 TTTTTTTCAA ATTTTAAA TTTATTTC chrV:7199238-7199318 7 2.21e-04 GTAGTG ATTTTAAA GGGGATATTT chrII:13732383-13732463 24 2.21e-04 AAAAATCTCG ATTTTAAA TCAATATCAA chrIII:3331946-3332026 23 2.21e-04 AAATTCCAga aattcgaa tttttcagtg chrV:19645750-19645830 46 2.21e-04 ggtgaaagga aattcgaa tatcccaaaa chrV:969139-969219 58 2.21e-04 AATTTTTTTA ATTTTAAA CAGCTTCAGT chrIII:12377440-12377520 42 2.55e-04 TTTTCGCGGC AATTCAAA TTAGAATTTT chrV:4370287-4370367 33 2.55e-04 aattggcggt aattcaaa taggaattag chrIV:992122-992202 31 2.55e-04 AAAAAAACTA AATTCAAA CTTCCCTCCG chrI:12509901-12509981 71 2.55e-04 GGAATTCAAA AATTCAAA TT chrII:11125254-11125334 68 2.55e-04 GGATTTTTTA AATTCAAA TTTGC chrIII:10093252-10093332 64 2.55e-04 TTTGCGAGGC AATTCAAA AATGATTTT chrI:5274307-5274387 18 2.55e-04 TTATTTACGA AATTCAAA AAATGGCGGC chrIV:12154429-12154509 28 2.55e-04 ACAGCGAAGC AATTCAAA TTACAATTCA chrI:5138046-5138126 18 2.55e-04 TTATTATTCA AATTCAAA TTTGCCGCCA chrIII:4095599-4095679 28 2.55e-04 CAATTGTTCG AATTCAAA TTTTGGCGCG chrI:14163351-14163431 4 2.55e-04 TCA AATTCAAA TCTCGCACCA chrI:9518931-9519011 73 2.55e-04 GTACTTCAAA AATTCAAA chrI:519976-520056 6 2.55e-04 ACTAA AATTCAAA TGCACAACGT chrIII:8370326-8370406 16 2.55e-04 ATCACTTTCA AATTCAAA CTCGCGCCCC chrI:12489266-12489346 7 2.55e-04 CCCAAA AATTCAAA TTTTCCGCCA chrII:10948802-10948882 68 2.55e-04 AATTATTTTA AATTCAAA TAAAA chrI:13338276-13338356 68 2.55e-04 aaaacgcgga aattcaaa tcgga chrIII:1429429-1429509 3 2.55e-04 AA AATTCAAA TTCCCGCGCT chrI:12492548-12492628 7 2.55e-04 CTCAAA AATTCAAA TTCCCGCCAA chrV:775193-775273 62 2.89e-04 ccccaaaacc attttcaa acgcgcgcca chrIII:8763264-8763344 46 2.89e-04 TCCACCTCAA ATTTTCAA ATAATAATTA chrIII:5727932-5728012 40 2.89e-04 CCCACTGAAA ATTTTCAA GGCGCGATTA chrI:128312-128392 70 2.89e-04 GGCGCCGAAA ATTTTCAA TTT chrII:14480016-14480096 6 2.89e-04 TTACA ATTTTCAA ACTCCCGCTT chrIII:9776085-9776165 1 2.89e-04 . ATTTTCAA AGTTATTCAT chrIII:12819322-12819402 16 2.89e-04 gcgcgaaaca attttcaa actcgcgcca chrIII:3309888-3309968 48 3.14e-04 cgtttgcaac aattccaa attttttctg chrIV:12390137-12390217 47 3.14e-04 TTGAAAAATT AATTCCAA CTACAATCTA chrIII:12225436-12225516 50 3.40e-04 GAGAAATTAA ATTTCGAA CCCTGCGCCT chrIII:11565752-11565832 24 3.74e-04 CAAAACCCCC ATTTCAAA CTCCCGCGCT chrIV:2275728-2275808 31 3.74e-04 CGTACTACAC ATTTCAAA TGGAGGGAGT chrII:7664000-7664080 1 3.74e-04 . ATTTCAAA ATTTAGCGCG chrII:8276225-8276305 35 4.81e-04 AAAAAAAAGA TATTTAAA TCACGCGCCC chrIV:8538782-8538862 42 4.81e-04 GCTCAATATT TATTTAAA TAGGCGAGGA chrII:8891192-8891272 32 5.06e-04 AGCCTTGTTG CATTTGAA TTGCCGCCAC chrII:4222674-4222754 49 5.75e-04 AGCTTAAAAG CATTTAAA CCCAAAATTA chrII:13260691-13260771 19 5.75e-04 CCGTAATCCA CATTTAAA GGAGCACGCA chrV:5596553-5596633 66 6.37e-04 CAAATATGAA TTTTTGAA TAATTTT chrII:4471110-4471190 5 6.37e-04 TGCA TTTTTGAA TTATTTTATT chrI:12806922-12807002 64 6.37e-04 CGCTTCGAAT TTTTTGAA TATTTTTTG chrI:2156755-2156835 13 8.04e-04 AACTGAATTT TATTCGAA GAATTAATTG chrIII:10562051-10562131 23 8.04e-04 TCTTACGGTG TTTTTAAA GGCGCAAGTT chrV:11554437-11554517 53 8.04e-04 CGGCGCTCGA TTTTTAAA CATATCTTTA chrII:11050812-11050892 22 8.04e-04 TCGTAACTTC AGTTTAAA GGCGCACGCT chrIV:5469908-5469988 40 8.04e-04 CCGGCGGGAG AAATTGAA TTTTCATTTT chrII:11578016-11578096 18 8.04e-04 ACTACTGTAG TTTTTAAA GGCACATAGG chrI:2754827-2754907 9 8.04e-04 cgcacacc tttttaaa ttttacaaaa chrIV:2311724-2311804 26 8.04e-04 ATTGAAAAGA AAATTGAA AAAAACACAT chrI:12513593-12513673 52 8.04e-04 AATTGTGGAC GATTTGAA GGTTCGGCAA chrI:11970066-11970146 16 8.04e-04 CGTAGTTAGC TTTTTAAA ACTACTTTTG chrIV:9403951-9404031 45 8.04e-04 AGCGGAGGGA AGTTTAAA TTTAGTTTTT chrIII:1831249-1831329 6 8.04e-04 tgaat tttttaaa tttcccgccT chrIV:842235-842315 56 8.04e-04 ATACGCGCGA GATTTGAA TTTTGTTTTT chrI:9730425-9730505 68 9.43e-04 TTTCTTTTTG AAATTAAA AAAAA chrIII:4313204-4313284 65 9.43e-04 GTCTCGCCGA GATTTAAA TGTTTCAA chrIV:13154768-13154848 1 9.43e-04 . aaattaaa gaaaataatt chrI:12507888-12507968 1 9.43e-04 . GATTTAAA GGCGCATGCC chrIII:2858503-2858583 10 9.43e-04 AATCTTTAA AAATTAAA TGAGGGTTAC chrIII:5047898-5047978 7 9.43e-04 TAATAA TATTCAAA TTCACTTCGC chrIV:379740-379820 11 9.43e-04 TAAACAAGAA TATTCAAA CTGCCGCCAC chrV:18086417-18086497 68 9.69e-04 GTACTGCGTA CTTTTGAA AAAAC chrIV:7509040-7509120 45 1.13e-03 CTTTTGGAGG TTTTTCAA AAAATCTATC chrV:4890123-4890203 63 1.13e-03 CGAAAAAGTG AATTTTAA GAATTCGCGC chrII:6198653-6198733 34 1.13e-03 GCGCGCGCTA CTTTTAAA AATTTTTCAT chrIV:1420790-1420870 29 1.13e-03 GTTTCAGTTA AGTTTCAA ACTTTGTCAA chrIII:12457400-12457480 17 1.13e-03 ATAAACCGCG TTTTTCAA AAATCTGTAA chrI:4185235-4185315 31 1.13e-03 TTGGTCAATA AGTTTCAA TTTGACCTAC chrV:11917341-11917421 51 1.13e-03 CAAAAAGGTT TTTTTCAA AAcgcgtggc chrIII:3171569-3171649 6 1.13e-03 AGGCG CATTCGAA AAGATATTGC chrIII:12575481-12575561 19 1.13e-03 CACCGTACTA TTTTTCAA TTAATATTTG chrII:8270174-8270254 5 1.13e-03 AAAC AATTTTAA TCGGCTATAT chrI:4765585-4765665 39 1.13e-03 CGTAATATTG AATTTTAA TTTTTGCCCG chrIV:10697740-10697820 60 1.13e-03 TTTTTCGCGG TTTTTCAA ATTTGACCGT chrIII:11290027-11290107 4 1.13e-03 AGC CTTTTAAA GACGCACGCC chrIII:9001629-9001709 39 1.13e-03 cgcggcaatg TTTTTCAA GCGGGAATTC chrII:11726615-11726695 55 1.24e-03 CGCAATAGAA AAATTCAA CGCGCCTTCA chrV:8413768-8413848 60 1.24e-03 TCTATTGCGA AAATTCAA GTTTTTTTTT chrI:5791992-5792072 73 1.24e-03 TTCTTTCGTA AAATTCAA chrV:11279712-11279792 16 1.24e-03 CTACAGTAAC CATTCAAA GGCACATACG chrIV:6777408-6777488 61 1.34e-03 GGGTCAAACT TTTTCGAA ATGCCATTCG chrIV:2642233-2642313 24 1.34e-03 AAATGGCGGT TTTTCGAA TTTTTTTTGT chrIV:13029138-13029218 59 1.34e-03 TTCGCCCAAT TTTTCGAA ACGTTTTTCT chrII:12284221-12284301 20 1.34e-03 TCGCAGCGAC TTTTCGAA AATCTTCAGA chrII:11782676-11782756 52 1.55e-03 TTGCGCGCAA AAATCGAA ACGCGCGAAA chrIII:4176356-4176436 24 1.55e-03 GCGGTACAAA AGTTCAAA TCGTGGCGCC chrII:7880555-7880635 62 1.55e-03 CGGGAAATCT GTTTTAAA AATGTTTGCC chrIII:10877688-10877768 20 1.55e-03 GGCTACGGTA GTTTTAAA GGCGCATGGC chrI:3198991-3199071 73 1.55e-03 CTTACTGTAG GTTTTAAA chrII:15025266-15025346 19 1.55e-03 ttcccgccga aaatCGAA TCAAAACACA chrIV:807262-807342 68 1.55e-03 GTCGTTTAAA AGTTCAAA TTTTG chrV:4175773-4175853 18 1.63e-03 AAAGGCGCAC AAATCAAA ACAAGCTCTT chrIII:6946622-6946702 10 1.70e-03 TCTTTCAAT ATTTTTAA CTGTTTCTTC chrV:20480904-20480984 25 1.70e-03 CGGTATTTAA CTTTCGAA CAATACTGCG chrII:5377597-5377677 6 1.86e-03 CGGTA GTTTTCAA AATACGCGGT chrIV:12194860-12194940 63 1.86e-03 AATTAAAATT GTTTTCAA GCATTTTTCG chrIV:6905590-6905670 5 1.86e-03 ATGG GTTTTCAA AACGATTAGA chrIII:10442726-10442806 55 1.86e-03 TAAAGAATAC CTTTCAAA GAGGGTTACG chrII:1306710-1306790 67 1.86e-03 CTTACTGTCG CTTTCAAA TTTTTT chrI:13487571-13487651 68 1.97e-03 TTTTTTTTTT AATTTgag ggggt chrIII:3311782-3311862 2 1.97e-03 A AATTTGAG GCAAACGCGC chrII:9938983-9939063 25 2.11e-03 TGCGTCATCG TGTTTGAA CTATTTGTGC chrI:5113903-5113983 64 2.33e-03 GCGAAGAATT AATTTCAG GAAGCCTAG chrII:13156247-13156327 12 2.33e-03 taaaattaat taattaaa ataatgcaag chrII:11968422-11968502 45 2.38e-03 GAAATTTTGG ATTTTGAG GTAAATGGCG chrI:5619281-5619361 4 2.38e-03 TTG CGTTTGAA ACACCGCGCG chrII:7863885-7863965 34 2.38e-03 GACGCGTCcc cgtttgaa ttgccgccca chrI:9988370-9988450 73 2.56e-03 AGCGGGAGGA CAATTGAA chrV:10018426-10018506 16 2.65e-03 AAACTCGCGG TAATTCAA GTCCGCAAAC chrIV:17273872-17273952 10 3.58e-03 CGCCGCTGA AAATTTAA TTTTCATTGT chrIV:2677847-2677927 73 3.58e-03 CGGGAATTCA AAATTTAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AWTTTVAA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:8940714-8940794 3.5e-05 21_[+3]_51 chrIII:3459373-3459453 3.5e-05 57_[+3]_15 chrI:6317315-6317395 3.5e-05 27_[+3]_45 chrI:12733014-12733094 3.5e-05 47_[+3]_25 chrIV:2902120-2902200 3.5e-05 12_[+3]_60 chrI:9585234-9585314 3.5e-05 54_[+3]_18 chrII:7599104-7599184 3.5e-05 36_[+3]_36 chrIII:9848744-9848824 3.5e-05 41_[+3]_31 chrI:3409496-3409576 3.5e-05 29_[+3]_43 chrV:6043445-6043525 3.5e-05 7_[+3]_65 chrIII:7104197-7104277 3.5e-05 10_[+3]_62 chrII:3554808-3554888 3.5e-05 26_[+3]_46 chrIV:14780685-14780765 3.5e-05 34_[+3]_38 chrIII:4098276-4098356 3.5e-05 19_[+3]_53 chrIII:13755860-13755940 3.5e-05 57_[+3]_15 chrI:6660246-6660326 3.5e-05 67_[+3]_5 chrV:2089938-2090018 3.5e-05 28_[+3]_44 chrIV:9067811-9067891 3.5e-05 35_[+3]_37 chrIII:2111512-2111592 3.5e-05 41_[+3]_31 chrI:2010549-2010629 3.5e-05 70_[+3]_2 chrII:1130376-1130456 3.5e-05 32_[+3]_40 chrIII:1534582-1534662 3.5e-05 11_[+3]_61 chrII:14125939-14126019 8e-05 27_[+3]_45 chrIV:13512343-13512423 8e-05 39_[+3]_33 chrV:1152880-1152960 8e-05 59_[+3]_13 chrV:14133128-14133208 8e-05 6_[+3]_66 chrIII:3723905-3723985 8e-05 67_[+3]_5 chrV:4376336-4376416 8e-05 9_[+3]_63 chrIII:4792705-4792785 8e-05 18_[+3]_54 chrIV:11953031-11953111 0.00011 42_[+3]_30 chrV:15395477-15395557 0.00011 43_[+3]_29 chrI:364263-364343 0.00011 6_[+3]_66 chrI:347321-347401 0.00011 31_[+3]_41 chrI:6513885-6513965 0.00011 36_[+3]_36 chrIII:3390307-3390387 0.00011 64_[+3]_8 chrIII:7085067-7085147 0.00011 58_[+3]_14 chrI:9287216-9287296 0.00011 58_[+3]_14 chrII:11573091-11573171 0.00011 21_[+3]_51 chrI:12491137-12491217 0.00011 72_[+3] chrV:6593853-6593933 0.00015 53_[+3]_19 chrII:15208324-15208404 0.00015 17_[+3]_55 chrI:3866586-3866666 0.00015 58_[+3]_14 chrIII:5719954-5720034 0.00015 7_[+3]_65 chrIII:5503804-5503884 0.00015 5_[+3]_67 chrII:5456033-5456113 0.00015 17_[+3]_55 chrV:6793130-6793210 0.00015 65_[+3]_7 chrV:19673470-19673550 0.00022 64_[+3]_8 chrV:7199238-7199318 0.00022 6_[+3]_66 chrII:13732383-13732463 0.00022 23_[+3]_49 chrIII:3331946-3332026 0.00022 22_[+3]_50 chrV:19645750-19645830 0.00022 45_[+3]_27 chrV:969139-969219 0.00022 57_[+3]_15 chrIII:12377440-12377520 0.00025 41_[+3]_31 chrV:4370287-4370367 0.00025 32_[+3]_40 chrIV:992122-992202 0.00025 30_[+3]_42 chrI:12509901-12509981 0.00025 70_[+3]_2 chrII:11125254-11125334 0.00025 67_[+3]_5 chrIII:10093252-10093332 0.00025 63_[+3]_9 chrI:5274307-5274387 0.00025 17_[+3]_55 chrIV:12154429-12154509 0.00025 27_[+3]_45 chrI:5138046-5138126 0.00025 17_[+3]_55 chrIII:4095599-4095679 0.00025 27_[+3]_45 chrI:14163351-14163431 0.00025 3_[+3]_69 chrI:9518931-9519011 0.00025 72_[+3] chrI:519976-520056 0.00025 5_[+3]_67 chrIII:8370326-8370406 0.00025 15_[+3]_57 chrI:12489266-12489346 0.00025 6_[+3]_66 chrII:10948802-10948882 0.00025 67_[+3]_5 chrI:13338276-13338356 0.00025 67_[+3]_5 chrIII:1429429-1429509 0.00025 2_[+3]_70 chrI:12492548-12492628 0.00025 6_[+3]_66 chrV:775193-775273 0.00029 61_[+3]_11 chrIII:8763264-8763344 0.00029 45_[+3]_27 chrIII:5727932-5728012 0.00029 39_[+3]_33 chrI:128312-128392 0.00029 69_[+3]_3 chrII:14480016-14480096 0.00029 5_[+3]_67 chrIII:9776085-9776165 0.00029 [+3]_72 chrIII:12819322-12819402 0.00029 15_[+3]_57 chrIII:3309888-3309968 0.00031 47_[+3]_25 chrIV:12390137-12390217 0.00031 46_[+3]_26 chrIII:12225436-12225516 0.00034 49_[+3]_23 chrIII:11565752-11565832 0.00037 23_[+3]_49 chrIV:2275728-2275808 0.00037 30_[+3]_42 chrII:7664000-7664080 0.00037 [+3]_72 chrII:8276225-8276305 0.00048 34_[+3]_38 chrIV:8538782-8538862 0.00048 41_[+3]_31 chrII:8891192-8891272 0.00051 31_[+3]_41 chrII:4222674-4222754 0.00057 48_[+3]_24 chrII:13260691-13260771 0.00057 18_[+3]_54 chrV:5596553-5596633 0.00064 65_[+3]_7 chrII:4471110-4471190 0.00064 4_[+3]_68 chrI:12806922-12807002 0.00064 63_[+3]_9 chrI:2156755-2156835 0.0008 12_[+3]_60 chrIII:10562051-10562131 0.0008 22_[+3]_50 chrV:11554437-11554517 0.0008 52_[+3]_20 chrII:11050812-11050892 0.0008 21_[+3]_51 chrIV:5469908-5469988 0.0008 39_[+3]_33 chrII:11578016-11578096 0.0008 17_[+3]_55 chrI:2754827-2754907 0.0008 8_[+3]_64 chrIV:2311724-2311804 0.0008 25_[+3]_47 chrI:12513593-12513673 0.0008 51_[+3]_21 chrI:11970066-11970146 0.0008 15_[+3]_57 chrIV:9403951-9404031 0.0008 44_[+3]_28 chrIII:1831249-1831329 0.0008 5_[+3]_67 chrIV:842235-842315 0.0008 55_[+3]_17 chrI:9730425-9730505 0.00094 67_[+3]_5 chrIII:4313204-4313284 0.00094 64_[+3]_8 chrIV:13154768-13154848 0.00094 [+3]_72 chrI:12507888-12507968 0.00094 [+3]_72 chrIII:2858503-2858583 0.00094 9_[+3]_63 chrIII:5047898-5047978 0.00094 6_[+3]_66 chrIV:379740-379820 0.00094 10_[+3]_62 chrV:18086417-18086497 0.00097 67_[+3]_5 chrIV:7509040-7509120 0.0011 44_[+3]_28 chrV:4890123-4890203 0.0011 62_[+3]_10 chrII:6198653-6198733 0.0011 33_[+3]_39 chrIV:1420790-1420870 0.0011 28_[+3]_44 chrIII:12457400-12457480 0.0011 16_[+3]_56 chrI:4185235-4185315 0.0011 30_[+3]_42 chrV:11917341-11917421 0.0011 50_[+3]_22 chrIII:3171569-3171649 0.0011 5_[+3]_67 chrIII:12575481-12575561 0.0011 18_[+3]_54 chrII:8270174-8270254 0.0011 4_[+3]_68 chrI:4765585-4765665 0.0011 38_[+3]_34 chrIV:10697740-10697820 0.0011 59_[+3]_13 chrIII:11290027-11290107 0.0011 3_[+3]_69 chrIII:9001629-9001709 0.0011 38_[+3]_34 chrII:11726615-11726695 0.0012 54_[+3]_18 chrV:8413768-8413848 0.0012 59_[+3]_13 chrI:5791992-5792072 0.0012 72_[+3] chrV:11279712-11279792 0.0012 15_[+3]_57 chrIV:6777408-6777488 0.0013 60_[+3]_12 chrIV:2642233-2642313 0.0013 23_[+3]_49 chrIV:13029138-13029218 0.0013 58_[+3]_14 chrII:12284221-12284301 0.0013 19_[+3]_53 chrII:11782676-11782756 0.0016 51_[+3]_21 chrIII:4176356-4176436 0.0016 23_[+3]_49 chrII:7880555-7880635 0.0016 61_[+3]_11 chrIII:10877688-10877768 0.0016 19_[+3]_53 chrI:3198991-3199071 0.0016 72_[+3] chrII:15025266-15025346 0.0016 18_[+3]_54 chrIV:807262-807342 0.0016 67_[+3]_5 chrV:4175773-4175853 0.0016 17_[+3]_55 chrIII:6946622-6946702 0.0017 9_[+3]_63 chrV:20480904-20480984 0.0017 24_[+3]_48 chrII:5377597-5377677 0.0019 5_[+3]_67 chrIV:12194860-12194940 0.0019 62_[+3]_10 chrIV:6905590-6905670 0.0019 4_[+3]_68 chrIII:10442726-10442806 0.0019 54_[+3]_18 chrII:1306710-1306790 0.0019 66_[+3]_6 chrI:13487571-13487651 0.002 67_[+3]_5 chrIII:3311782-3311862 0.002 1_[+3]_71 chrII:9938983-9939063 0.0021 24_[+3]_48 chrI:5113903-5113983 0.0023 63_[+3]_9 chrII:13156247-13156327 0.0023 11_[+3]_61 chrII:11968422-11968502 0.0024 44_[+3]_28 chrI:5619281-5619361 0.0024 3_[+3]_69 chrII:7863885-7863965 0.0024 33_[+3]_39 chrI:9988370-9988450 0.0026 72_[+3] chrV:10018426-10018506 0.0026 15_[+3]_57 chrIV:17273872-17273952 0.0036 9_[+3]_63 chrIV:2677847-2677927 0.0036 72_[+3] -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AWTTTVAA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AWTTTVAA width=8 seqs=162 chrII:8940714-8940794 ( 22) AATTTGAA 1 chrIII:3459373-3459453 ( 58) AATTTGAA 1 chrI:6317315-6317395 ( 28) AATTTGAA 1 chrI:12733014-12733094 ( 48) AATTTGAA 1 chrIV:2902120-2902200 ( 13) AATTTGAA 1 chrI:9585234-9585314 ( 55) AATTTGAA 1 chrII:7599104-7599184 ( 37) AATTTGAA 1 chrIII:9848744-9848824 ( 42) AATTTGAA 1 chrI:3409496-3409576 ( 30) AATTTGAA 1 chrV:6043445-6043525 ( 8) AATTTGAA 1 chrIII:7104197-7104277 ( 11) AATTTGAA 1 chrII:3554808-3554888 ( 27) AATTTGAA 1 chrIV:14780685-14780765 ( 35) AATTTGAA 1 chrIII:4098276-4098356 ( 20) AATTTGAA 1 chrIII:13755860-13755940 ( 58) AATTTGAA 1 chrI:6660246-6660326 ( 68) AATTTGAA 1 chrV:2089938-2090018 ( 29) AATTTGAA 1 chrIV:9067811-9067891 ( 36) AATTTGAA 1 chrIII:2111512-2111592 ( 42) AATTTGAA 1 chrI:2010549-2010629 ( 71) AATTTGAA 1 chrII:1130376-1130456 ( 33) AATTTGAA 1 chrIII:1534582-1534662 ( 12) AATTTGAA 1 chrII:14125939-14126019 ( 28) AATTTAAA 1 chrIV:13512343-13512423 ( 40) AATTTAAA 1 chrV:1152880-1152960 ( 60) AATTTAAA 1 chrV:14133128-14133208 ( 7) AATTTAAA 1 chrIII:3723905-3723985 ( 68) AATTTAAA 1 chrV:4376336-4376416 ( 10) AATTTAAA 1 chrIII:4792705-4792785 ( 19) AATTTAAA 1 chrIV:11953031-11953111 ( 43) AATTTCAA 1 chrV:15395477-15395557 ( 44) AATTTCAA 1 chrI:364263-364343 ( 7) AATTTCAA 1 chrI:347321-347401 ( 32) AATTTCAA 1 chrI:6513885-6513965 ( 37) AATTTCAA 1 chrIII:3390307-3390387 ( 65) AATTTCAA 1 chrIII:7085067-7085147 ( 59) AATTTCAA 1 chrI:9287216-9287296 ( 59) AATTTCAA 1 chrII:11573091-11573171 ( 22) AATTTCAA 1 chrI:12491137-12491217 ( 73) AATTTCAA 1 chrV:6593853-6593933 ( 54) ATTTTGAA 1 chrII:15208324-15208404 ( 18) ATTTTGAA 1 chrI:3866586-3866666 ( 59) ATTTTGAA 1 chrIII:5719954-5720034 ( 8) ATTTTGAA 1 chrIII:5503804-5503884 ( 6) ATTTTGAA 1 chrII:5456033-5456113 ( 18) ATTTTGAA 1 chrV:6793130-6793210 ( 66) ATTTTGAA 1 chrV:19673470-19673550 ( 65) ATTTTAAA 1 chrV:7199238-7199318 ( 7) ATTTTAAA 1 chrII:13732383-13732463 ( 24) ATTTTAAA 1 chrIII:3331946-3332026 ( 23) AATTCGAA 1 chrV:19645750-19645830 ( 46) AATTCGAA 1 chrV:969139-969219 ( 58) ATTTTAAA 1 chrIII:12377440-12377520 ( 42) AATTCAAA 1 chrV:4370287-4370367 ( 33) AATTCAAA 1 chrIV:992122-992202 ( 31) AATTCAAA 1 chrI:12509901-12509981 ( 71) AATTCAAA 1 chrII:11125254-11125334 ( 68) AATTCAAA 1 chrIII:10093252-10093332 ( 64) AATTCAAA 1 chrI:5274307-5274387 ( 18) AATTCAAA 1 chrIV:12154429-12154509 ( 28) AATTCAAA 1 chrI:5138046-5138126 ( 18) AATTCAAA 1 chrIII:4095599-4095679 ( 28) AATTCAAA 1 chrI:14163351-14163431 ( 4) AATTCAAA 1 chrI:9518931-9519011 ( 73) AATTCAAA 1 chrI:519976-520056 ( 6) AATTCAAA 1 chrIII:8370326-8370406 ( 16) AATTCAAA 1 chrI:12489266-12489346 ( 7) AATTCAAA 1 chrII:10948802-10948882 ( 68) AATTCAAA 1 chrI:13338276-13338356 ( 68) AATTCAAA 1 chrIII:1429429-1429509 ( 3) AATTCAAA 1 chrI:12492548-12492628 ( 7) AATTCAAA 1 chrV:775193-775273 ( 62) ATTTTCAA 1 chrIII:8763264-8763344 ( 46) ATTTTCAA 1 chrIII:5727932-5728012 ( 40) ATTTTCAA 1 chrI:128312-128392 ( 70) ATTTTCAA 1 chrII:14480016-14480096 ( 6) ATTTTCAA 1 chrIII:9776085-9776165 ( 1) ATTTTCAA 1 chrIII:12819322-12819402 ( 16) ATTTTCAA 1 chrIII:3309888-3309968 ( 48) AATTCCAA 1 chrIV:12390137-12390217 ( 47) AATTCCAA 1 chrIII:12225436-12225516 ( 50) ATTTCGAA 1 chrIII:11565752-11565832 ( 24) ATTTCAAA 1 chrIV:2275728-2275808 ( 31) ATTTCAAA 1 chrII:7664000-7664080 ( 1) ATTTCAAA 1 chrII:8276225-8276305 ( 35) TATTTAAA 1 chrIV:8538782-8538862 ( 42) TATTTAAA 1 chrII:8891192-8891272 ( 32) CATTTGAA 1 chrII:4222674-4222754 ( 49) CATTTAAA 1 chrII:13260691-13260771 ( 19) CATTTAAA 1 chrV:5596553-5596633 ( 66) TTTTTGAA 1 chrII:4471110-4471190 ( 5) TTTTTGAA 1 chrI:12806922-12807002 ( 64) TTTTTGAA 1 chrI:2156755-2156835 ( 13) TATTCGAA 1 chrIII:10562051-10562131 ( 23) TTTTTAAA 1 chrV:11554437-11554517 ( 53) TTTTTAAA 1 chrII:11050812-11050892 ( 22) AGTTTAAA 1 chrIV:5469908-5469988 ( 40) AAATTGAA 1 chrII:11578016-11578096 ( 18) TTTTTAAA 1 chrI:2754827-2754907 ( 9) TTTTTAAA 1 chrIV:2311724-2311804 ( 26) AAATTGAA 1 chrI:12513593-12513673 ( 52) GATTTGAA 1 chrI:11970066-11970146 ( 16) TTTTTAAA 1 chrIV:9403951-9404031 ( 45) AGTTTAAA 1 chrIII:1831249-1831329 ( 6) TTTTTAAA 1 chrIV:842235-842315 ( 56) GATTTGAA 1 chrI:9730425-9730505 ( 68) AAATTAAA 1 chrIII:4313204-4313284 ( 65) GATTTAAA 1 chrIV:13154768-13154848 ( 1) AAATTAAA 1 chrI:12507888-12507968 ( 1) GATTTAAA 1 chrIII:2858503-2858583 ( 10) AAATTAAA 1 chrIII:5047898-5047978 ( 7) TATTCAAA 1 chrIV:379740-379820 ( 11) TATTCAAA 1 chrV:18086417-18086497 ( 68) CTTTTGAA 1 chrIV:7509040-7509120 ( 45) TTTTTCAA 1 chrV:4890123-4890203 ( 63) AATTTTAA 1 chrII:6198653-6198733 ( 34) CTTTTAAA 1 chrIV:1420790-1420870 ( 29) AGTTTCAA 1 chrIII:12457400-12457480 ( 17) TTTTTCAA 1 chrI:4185235-4185315 ( 31) AGTTTCAA 1 chrV:11917341-11917421 ( 51) TTTTTCAA 1 chrIII:3171569-3171649 ( 6) CATTCGAA 1 chrIII:12575481-12575561 ( 19) TTTTTCAA 1 chrII:8270174-8270254 ( 5) AATTTTAA 1 chrI:4765585-4765665 ( 39) AATTTTAA 1 chrIV:10697740-10697820 ( 60) TTTTTCAA 1 chrIII:11290027-11290107 ( 4) CTTTTAAA 1 chrIII:9001629-9001709 ( 39) TTTTTCAA 1 chrII:11726615-11726695 ( 55) AAATTCAA 1 chrV:8413768-8413848 ( 60) AAATTCAA 1 chrI:5791992-5792072 ( 73) AAATTCAA 1 chrV:11279712-11279792 ( 16) CATTCAAA 1 chrIV:6777408-6777488 ( 61) TTTTCGAA 1 chrIV:2642233-2642313 ( 24) TTTTCGAA 1 chrIV:13029138-13029218 ( 59) TTTTCGAA 1 chrII:12284221-12284301 ( 20) TTTTCGAA 1 chrII:11782676-11782756 ( 52) AAATCGAA 1 chrIII:4176356-4176436 ( 24) AGTTCAAA 1 chrII:7880555-7880635 ( 62) GTTTTAAA 1 chrIII:10877688-10877768 ( 20) GTTTTAAA 1 chrI:3198991-3199071 ( 73) GTTTTAAA 1 chrII:15025266-15025346 ( 19) AAATCGAA 1 chrIV:807262-807342 ( 68) AGTTCAAA 1 chrV:4175773-4175853 ( 18) AAATCAAA 1 chrIII:6946622-6946702 ( 10) ATTTTTAA 1 chrV:20480904-20480984 ( 25) CTTTCGAA 1 chrII:5377597-5377677 ( 6) GTTTTCAA 1 chrIV:12194860-12194940 ( 63) GTTTTCAA 1 chrIV:6905590-6905670 ( 5) GTTTTCAA 1 chrIII:10442726-10442806 ( 55) CTTTCAAA 1 chrII:1306710-1306790 ( 67) CTTTCAAA 1 chrI:13487571-13487651 ( 68) AATTTGAG 1 chrIII:3311782-3311862 ( 2) AATTTGAG 1 chrII:9938983-9939063 ( 25) TGTTTGAA 1 chrI:5113903-5113983 ( 64) AATTTCAG 1 chrII:13156247-13156327 ( 12) TAATTAAA 1 chrII:11968422-11968502 ( 45) ATTTTGAG 1 chrI:5619281-5619361 ( 4) CGTTTGAA 1 chrII:7863885-7863965 ( 34) CGTTTGAA 1 chrI:9988370-9988450 ( 73) CAATTGAA 1 chrV:10018426-10018506 ( 16) TAATTCAA 1 chrIV:17273872-17273952 ( 10) AAATTTAA 1 chrIV:2677847-2677927 ( 73) AAATTTAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AWTTTVAA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 7.76355 E= 9.0e-050 127 -128 -180 -80 109 -1398 -195 23 -153 -1398 -1398 164 -1398 -1398 -1398 179 -1398 37 -1398 133 47 4 71 -297 181 -1398 -1398 -1398 178 -1398 -312 -1398 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AWTTTVAA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 162 E= 9.0e-050 0.685185 0.086420 0.061728 0.166667 0.604938 0.000000 0.055556 0.339506 0.098765 0.000000 0.000000 0.901235 0.000000 0.000000 0.000000 1.000000 0.000000 0.271605 0.000000 0.728395 0.395062 0.216049 0.351852 0.037037 1.000000 0.000000 0.000000 0.000000 0.975309 0.000000 0.024691 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AWTTTVAA MEME-3 regular expression -------------------------------------------------------------------------------- A[AT]TT[TC][AGC]AA -------------------------------------------------------------------------------- Time 16.06 secs. ******************************************************************************** ******************************************************************************** MOTIF GCGAGACC MEME-4 width = 8 sites = 31 llr = 317 E-value = 1.1e-025 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCGAGACC MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::9:a:: pos.-specific C :8::::aa probability G 8:a1a::: matrix T 22:::::: bits 2.2 ** 2.0 * * ** 1.8 * **** 1.6 ******* Relative 1.3 ******** Entropy 1.1 ******** (14.8 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GCGAGACC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGAGACC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrI:8309283-8309363 22 7.58e-06 GCAAGTCGCT GCGAGACC CAGGTGAAAA chrI:1872613-1872693 39 7.58e-06 TGTTATCGTG GCGAGACC TATGCCACCC chrV:6496761-6496841 31 7.58e-06 CAAAATCGTT GCGAGACC CTGGTGGGAT chrII:11726615-11726695 35 7.58e-06 GGTAATCGTG GCGAGACC CACGCAATAG chrIV:7764465-7764545 38 7.58e-06 CCACGTCGTG GCGAGACC TCCGCACAAA chrIV:1420790-1420870 73 7.58e-06 GTATTTCGTT GCGAGACC chrV:5996257-5996337 17 7.58e-06 GGTAATCGTG GCGAGACC AAACCGCGAT chrV:11917341-11917421 67 7.58e-06 AAAAcgcgtg gcgagacc attttg chrII:10935501-10935581 37 7.58e-06 atggttcgag gcgagacc caaatggtac chrI:12903619-12903699 61 7.58e-06 CAGAATCGTG GCGAGACC CACAAAAACC chrII:8270174-8270254 34 7.58e-06 TAAAATCGTG GCGAGACC CTCTAAAAAT chrIII:5663676-5663756 49 7.58e-06 CGCATtcgcg gcgagacc tatcgcatgg chrII:14247370-14247450 25 7.58e-06 GTTAATCGCG GCGAGACC CGCCACACTT chrII:9647606-9647686 29 7.58e-06 ATATAGCGTG GCGAGACC CGTTCAAACT chrII:11573091-11573171 51 7.58e-06 TGTAGTCGTT GCGAGACC CCACCGAATG chrIV:379740-379820 45 7.58e-06 GCGTATCGTG GCGAGACC CTTTCAAGTA chrV:3204620-3204700 12 1.78e-05 TAAAGTCGCG TCGAGACC CTTCACACTT chrIII:9054582-9054662 4 1.78e-05 GTC TCGAGACC CGAGGCTGTG chrIII:12457400-12457480 43 1.78e-05 AAAATTCGTT TCGAGACC CGAGGAACAA chrI:2754827-2754907 37 1.78e-05 atttgtcgtg tcgagacc aggcagtgtt chrIII:7060849-7060929 57 1.78e-05 AGTACTCGTT TCGAGACC CTCACGCCGC chrIV:2783367-2783447 22 1.78e-05 AATTTTCCAG TCGAGACC CGCTGCACAA chrIII:10562051-10562131 59 2.82e-05 TTGTGTCGTG GTGAGACC CGTGCGCCTT chrII:13732383-13732463 72 2.82e-05 TTCTTTCGTG GTGAGACC C chrI:506300-506380 44 2.82e-05 GCTCTTCGTG GTGAGACC ACTGCGCCGC chrI:3866586-3866666 33 2.82e-05 GGTATTCGTG GTGAGACC CGCGCCCCCG chrIV:9589249-9589329 22 2.82e-05 CCGCGGAGTG GTGAGACC CAATTGGTAG chrI:6317315-6317395 64 3.40e-05 TGTGTTCGTC GCGGGACC CATCTGAAA chrIV:13154768-13154848 39 3.40e-05 AGTGATCGTT GCGGGACC CGATGAACCG chrIV:829850-829930 11 6.81e-05 TAAAGGCGTG GCGAAACC CAAACGAAGA chrV:4175773-4175853 41 6.81e-05 CTCTTTCGTG GCAAGACC CATGTGTGCC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGAGACC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:8309283-8309363 7.6e-06 21_[+4]_51 chrI:1872613-1872693 7.6e-06 38_[+4]_34 chrV:6496761-6496841 7.6e-06 30_[+4]_42 chrII:11726615-11726695 7.6e-06 34_[+4]_38 chrIV:7764465-7764545 7.6e-06 37_[+4]_35 chrIV:1420790-1420870 7.6e-06 72_[+4] chrV:5996257-5996337 7.6e-06 16_[+4]_56 chrV:11917341-11917421 7.6e-06 66_[+4]_6 chrII:10935501-10935581 7.6e-06 36_[+4]_36 chrI:12903619-12903699 7.6e-06 60_[+4]_12 chrII:8270174-8270254 7.6e-06 33_[+4]_39 chrIII:5663676-5663756 7.6e-06 48_[+4]_24 chrII:14247370-14247450 7.6e-06 24_[+4]_48 chrII:9647606-9647686 7.6e-06 28_[+4]_44 chrII:11573091-11573171 7.6e-06 50_[+4]_22 chrIV:379740-379820 7.6e-06 44_[+4]_28 chrV:3204620-3204700 1.8e-05 11_[+4]_61 chrIII:9054582-9054662 1.8e-05 3_[+4]_69 chrIII:12457400-12457480 1.8e-05 42_[+4]_30 chrI:2754827-2754907 1.8e-05 36_[+4]_36 chrIII:7060849-7060929 1.8e-05 56_[+4]_16 chrIV:2783367-2783447 1.8e-05 21_[+4]_51 chrIII:10562051-10562131 2.8e-05 58_[+4]_14 chrII:13732383-13732463 2.8e-05 71_[+4]_1 chrI:506300-506380 2.8e-05 43_[+4]_29 chrI:3866586-3866666 2.8e-05 32_[+4]_40 chrIV:9589249-9589329 2.8e-05 21_[+4]_51 chrI:6317315-6317395 3.4e-05 63_[+4]_9 chrIV:13154768-13154848 3.4e-05 38_[+4]_34 chrIV:829850-829930 6.8e-05 10_[+4]_62 chrV:4175773-4175853 6.8e-05 40_[+4]_32 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGAGACC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCGAGACC width=8 seqs=31 chrI:8309283-8309363 ( 22) GCGAGACC 1 chrI:1872613-1872693 ( 39) GCGAGACC 1 chrV:6496761-6496841 ( 31) GCGAGACC 1 chrII:11726615-11726695 ( 35) GCGAGACC 1 chrIV:7764465-7764545 ( 38) GCGAGACC 1 chrIV:1420790-1420870 ( 73) GCGAGACC 1 chrV:5996257-5996337 ( 17) GCGAGACC 1 chrV:11917341-11917421 ( 67) GCGAGACC 1 chrII:10935501-10935581 ( 37) GCGAGACC 1 chrI:12903619-12903699 ( 61) GCGAGACC 1 chrII:8270174-8270254 ( 34) GCGAGACC 1 chrIII:5663676-5663756 ( 49) GCGAGACC 1 chrII:14247370-14247450 ( 25) GCGAGACC 1 chrII:9647606-9647686 ( 29) GCGAGACC 1 chrII:11573091-11573171 ( 51) GCGAGACC 1 chrIV:379740-379820 ( 45) GCGAGACC 1 chrV:3204620-3204700 ( 12) TCGAGACC 1 chrIII:9054582-9054662 ( 4) TCGAGACC 1 chrIII:12457400-12457480 ( 43) TCGAGACC 1 chrI:2754827-2754907 ( 37) TCGAGACC 1 chrIII:7060849-7060929 ( 57) TCGAGACC 1 chrIV:2783367-2783447 ( 22) TCGAGACC 1 chrIII:10562051-10562131 ( 59) GTGAGACC 1 chrII:13732383-13732463 ( 72) GTGAGACC 1 chrI:506300-506380 ( 44) GTGAGACC 1 chrI:3866586-3866666 ( 33) GTGAGACC 1 chrIV:9589249-9589329 ( 22) GTGAGACC 1 chrI:6317315-6317395 ( 64) GCGGGACC 1 chrIV:13154768-13154848 ( 39) GCGGGACC 1 chrIV:829850-829930 ( 11) GCGAAACC 1 chrV:4175773-4175853 ( 41) GCAAGACC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGAGACC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.90618 E= 1.1e-025 -1160 -1160 191 -58 -1160 199 -1160 -85 -314 -1160 217 -1160 172 -1160 -173 -1160 -314 -1160 217 -1160 181 -1160 -1160 -1160 -1160 225 -1160 -1160 -1160 225 -1160 -1160 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGAGACC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 31 E= 1.1e-025 0.000000 0.000000 0.806452 0.193548 0.000000 0.838710 0.000000 0.161290 0.032258 0.000000 0.967742 0.000000 0.935484 0.000000 0.064516 0.000000 0.032258 0.000000 0.967742 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGAGACC MEME-4 regular expression -------------------------------------------------------------------------------- GCGAGACC -------------------------------------------------------------------------------- Time 18.99 secs. ******************************************************************************** ******************************************************************************** MOTIF GGTCTCGC MEME-5 width = 8 sites = 32 llr = 314 E-value = 1.2e-021 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGTCTCGC MEME-5 Description -------------------------------------------------------------------------------- Simplified A ::::::22 pos.-specific C :::91a:8 probability G aa::::8: matrix T ::a19::: bits 2.2 * 2.0 ** * 1.8 **** * 1.6 ****** Relative 1.3 ******** Entropy 1.1 ******** (14.2 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GGTCTCGC consensus A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTCTCGC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIV:12194860-12194940 14 7.85e-06 TCTTGCGTGT GGTCTCGC CACGATTTCC chrI:6369865-6369945 16 7.85e-06 ACAGTGCATG GGTCTCGC CGCGAGATAC chrII:12880568-12880648 60 7.85e-06 TAGTGGAGTG GGTCTCGC AGCGAAAAAC chrIII:12977759-12977839 8 7.85e-06 TGGGCTG GGTCTCGC TCCGCAGAAG chrIV:13512343-13512423 73 7.85e-06 TGCGCCGATG GGTCTCGC chrIII:12225436-12225516 22 7.85e-06 AGGCCCGTAG GGTCTCGC CACGAAGCAC chrIII:4313204-4313284 54 7.85e-06 GGAACAAACG GGTCTCGC CGAGATTTAA chrII:14410935-14411015 32 7.85e-06 TTTTATGCTG GGTCTCGC AACGCGCACA chrII:12284221-12284301 6 7.85e-06 CCATG GGTCTCGC AGCGACTTTT chrIII:11524242-11524322 52 7.85e-06 TAGCGCGGTG GGTCTCGC CACGACATTT chrI:12806922-12807002 23 7.85e-06 CCCTTCCGCA GGTCTCGC CACGATTACA chrII:1306710-1306790 34 7.85e-06 TTCACTGTTG GGTCTCGC CACGCTCAGG chrI:9287216-9287296 14 7.85e-06 TTGTCATATG GGTCTCGC CACGACTTTT chrIII:5047898-5047978 69 7.85e-06 TATTGATTGA GGTCTCGC AGCG chrIII:8763264-8763344 5 1.83e-05 CGCG GGTCTCAC CACGTCTTTT chrI:364263-364343 40 1.83e-05 CTTTTGTTTG GGTCTCAC ACCGAATGTA chrIV:12154429-12154509 12 1.83e-05 TCGCGGTGAG GGTCTCAC AGCGAAGCAA chrII:11968422-11968502 1 1.83e-05 . GGTCTCAC CACGACTACC chrI:9518931-9519011 42 1.83e-05 ATCTTCACGA GGTCTCAC AACGCAAATT chrIV:4760841-4760921 63 1.83e-05 TTTTCACATG GGTCTCAC CACGACTTGT chrIV:9368018-9368098 34 2.89e-05 agcggtgcca ggtctcga cgcgcctttc chrIII:3171569-3171649 28 2.89e-05 TATTGCAGCG GGTCTCGA CGCGAAATCC chrIII:9001629-9001709 21 2.89e-05 ttaatggatg ggtctcga cgcggcaatg chrII:7353206-7353286 29 2.89e-05 TTGGACATCG GGTCTCGA CACGAGGAAT chrIII:13755860-13755940 37 2.89e-05 ACCTGCGACA GGTCTCGA CACGATCTAC chrV:11279712-11279792 46 3.46e-05 TTTTTTGATG GGTCCCGC AGCGATTGTT chrIII:5727932-5728012 8 4.54e-05 TCTTGCG GGTTTCGC AACGATTACA chrIII:4095599-4095679 8 4.54e-05 CAATAGA GGTTTCGC GCCAATTGTT chrII:13260691-13260771 49 5.34e-05 TCTACTGAAT GGTCTCGG CACGCTAACG chrII:13722930-13723010 38 7.51e-05 ATGCAAATGC GCTCTCGC GCGCGCCAAG chrI:7554741-7554821 27 8.59e-05 GTTACGAGTG GGTCTTGC AGCGAAAGCT chrV:7199238-7199318 40 9.35e-05 TATTCGGGTG GGTCCCAC CACAAGACTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTCTCGC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:12194860-12194940 7.9e-06 13_[+5]_59 chrI:6369865-6369945 7.9e-06 15_[+5]_57 chrII:12880568-12880648 7.9e-06 59_[+5]_13 chrIII:12977759-12977839 7.9e-06 7_[+5]_65 chrIV:13512343-13512423 7.9e-06 72_[+5] chrIII:12225436-12225516 7.9e-06 21_[+5]_51 chrIII:4313204-4313284 7.9e-06 53_[+5]_19 chrII:14410935-14411015 7.9e-06 31_[+5]_41 chrII:12284221-12284301 7.9e-06 5_[+5]_67 chrIII:11524242-11524322 7.9e-06 51_[+5]_21 chrI:12806922-12807002 7.9e-06 22_[+5]_50 chrII:1306710-1306790 7.9e-06 33_[+5]_39 chrI:9287216-9287296 7.9e-06 13_[+5]_59 chrIII:5047898-5047978 7.9e-06 68_[+5]_4 chrIII:8763264-8763344 1.8e-05 4_[+5]_68 chrI:364263-364343 1.8e-05 39_[+5]_33 chrIV:12154429-12154509 1.8e-05 11_[+5]_61 chrII:11968422-11968502 1.8e-05 [+5]_72 chrI:9518931-9519011 1.8e-05 41_[+5]_31 chrIV:4760841-4760921 1.8e-05 62_[+5]_10 chrIV:9368018-9368098 2.9e-05 33_[+5]_39 chrIII:3171569-3171649 2.9e-05 27_[+5]_45 chrIII:9001629-9001709 2.9e-05 20_[+5]_52 chrII:7353206-7353286 2.9e-05 28_[+5]_44 chrIII:13755860-13755940 2.9e-05 36_[+5]_36 chrV:11279712-11279792 3.5e-05 45_[+5]_27 chrIII:5727932-5728012 4.5e-05 7_[+5]_65 chrIII:4095599-4095679 4.5e-05 7_[+5]_65 chrII:13260691-13260771 5.3e-05 48_[+5]_24 chrII:13722930-13723010 7.5e-05 37_[+5]_35 chrI:7554741-7554821 8.6e-05 26_[+5]_46 chrV:7199238-7199318 9.3e-05 39_[+5]_33 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTCTCGC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGTCTCGC width=8 seqs=32 chrIV:12194860-12194940 ( 14) GGTCTCGC 1 chrI:6369865-6369945 ( 16) GGTCTCGC 1 chrII:12880568-12880648 ( 60) GGTCTCGC 1 chrIII:12977759-12977839 ( 8) GGTCTCGC 1 chrIV:13512343-13512423 ( 73) GGTCTCGC 1 chrIII:12225436-12225516 ( 22) GGTCTCGC 1 chrIII:4313204-4313284 ( 54) GGTCTCGC 1 chrII:14410935-14411015 ( 32) GGTCTCGC 1 chrII:12284221-12284301 ( 6) GGTCTCGC 1 chrIII:11524242-11524322 ( 52) GGTCTCGC 1 chrI:12806922-12807002 ( 23) GGTCTCGC 1 chrII:1306710-1306790 ( 34) GGTCTCGC 1 chrI:9287216-9287296 ( 14) GGTCTCGC 1 chrIII:5047898-5047978 ( 69) GGTCTCGC 1 chrIII:8763264-8763344 ( 5) GGTCTCAC 1 chrI:364263-364343 ( 40) GGTCTCAC 1 chrIV:12154429-12154509 ( 12) GGTCTCAC 1 chrII:11968422-11968502 ( 1) GGTCTCAC 1 chrI:9518931-9519011 ( 42) GGTCTCAC 1 chrIV:4760841-4760921 ( 63) GGTCTCAC 1 chrIV:9368018-9368098 ( 34) GGTCTCGA 1 chrIII:3171569-3171649 ( 28) GGTCTCGA 1 chrIII:9001629-9001709 ( 21) GGTCTCGA 1 chrII:7353206-7353286 ( 29) GGTCTCGA 1 chrIII:13755860-13755940 ( 37) GGTCTCGA 1 chrV:11279712-11279792 ( 46) GGTCCCGC 1 chrIII:5727932-5728012 ( 8) GGTTTCGC 1 chrIII:4095599-4095679 ( 8) GGTTTCGC 1 chrII:13260691-13260771 ( 49) GGTCTCGG 1 chrII:13722930-13723010 ( 38) GCTCTCGC 1 chrI:7554741-7554821 ( 27) GGTCTTGC 1 chrV:7199238-7199318 ( 40) GGTCCCAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTCTCGC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.15308 E= 1.2e-021 -1164 -1164 222 -1164 -1164 -275 217 -1164 -1164 -1164 -1164 179 -1164 215 -1164 -221 -1164 -175 -1164 169 -1164 220 -1164 -321 -38 -1164 186 -1164 -87 195 -278 -1164 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTCTCGC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 32 E= 1.2e-021 0.000000 0.000000 1.000000 0.000000 0.000000 0.031250 0.968750 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.937500 0.000000 0.062500 0.000000 0.062500 0.000000 0.937500 0.000000 0.968750 0.000000 0.031250 0.218750 0.000000 0.781250 0.000000 0.156250 0.812500 0.031250 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTCTCGC MEME-5 regular expression -------------------------------------------------------------------------------- GGTCTC[GA]C -------------------------------------------------------------------------------- Time 21.91 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:1534582-1534662 1.89e-02 11_[+3(3.46e-05)]_61 chrI:12492548-12492628 1.42e-01 80 chrIV:379740-379820 4.20e-04 44_[+4(7.58e-06)]_28 chrIII:8985644-8985724 8.75e-02 80 chrIII:1429429-1429509 2.18e-02 80 chrI:13338276-13338356 1.03e-03 7_[+1(4.24e-05)]_65 chrIV:807262-807342 2.90e-01 80 chrIII:5047898-5047978 2.83e-03 68_[+5(7.85e-06)]_4 chrI:3608352-3608432 2.75e-03 20_[+2(2.84e-05)]_26_[+1(8.37e-05)]_\ 18 chrV:16356946-16357026 1.55e-02 59_[+3(3.46e-05)]_13 chrII:1130376-1130456 5.80e-03 32_[+3(3.46e-05)]_40 chrIV:4176844-4176924 9.04e-01 80 chrI:2010549-2010629 7.92e-02 70_[+3(3.46e-05)]_2 chrIII:1428594-1428674 1.36e-02 80 chrIV:2783367-2783447 8.13e-05 21_[+4(1.78e-05)]_51 chrIII:2111512-2111592 8.73e-02 10_[+3(3.46e-05)]_23_[+3(3.46e-05)]_\ 31 chrIV:842235-842315 7.35e-03 23_[+1(8.37e-05)]_49 chrI:12491137-12491217 2.06e-03 47_[+1(2.10e-05)]_25 chrV:6793130-6793210 5.27e-03 58_[+3(8.05e-05)]_14 chrII:8891192-8891272 3.07e-01 80 chrII:5456033-5456113 2.96e-03 38_[+2(2.84e-05)]_34 chrIII:5503804-5503884 6.86e-03 80 chrII:10948802-10948882 2.60e-02 80 chrIV:3132358-3132438 1.56e-01 80 chrV:969139-969219 2.34e-03 80 chrII:11573091-11573171 6.44e-05 37_[+2(6.15e-05)]_5_[+4(7.58e-06)]_\ 22 chrII:14234522-14234602 1.79e-02 66_[+1(5.27e-05)]_6 chrIV:9067811-9067891 8.26e-03 35_[+3(3.46e-05)]_28_[+3(3.46e-05)]_\ 1 chrI:5300547-5300627 3.64e-03 59_[+1(4.24e-05)]_13 chrV:2089938-2090018 6.46e-03 28_[+3(3.46e-05)]_44 chrIII:1831249-1831329 2.16e-02 80 chrV:4963827-4963907 5.61e-01 80 chrIII:4792705-4792785 1.82e-02 18_[+3(8.05e-05)]_54 chrI:12489266-12489346 1.62e-01 80 chrI:9287216-9287296 7.25e-05 13_[+5(7.85e-06)]_15_[+2(6.15e-05)]_\ 36 chrII:1306710-1306790 3.69e-03 33_[+5(7.85e-06)]_39 chrII:9647606-9647686 6.16e-04 28_[+4(7.58e-06)]_44 chrI:6660246-6660326 1.22e-02 67_[+3(3.46e-05)]_5 chrI:12806922-12807002 2.78e-03 22_[+5(7.85e-06)]_50 chrII:9938983-9939063 7.35e-02 44_[+1(4.24e-05)]_28 chrIII:12819322-12819402 1.14e-02 5_[+1(8.37e-05)]_67 chrV:19645750-19645830 1.86e-01 80 chrIII:7085067-7085147 3.08e-02 80 chrII:14247370-14247450 4.11e-05 24_[+4(7.58e-06)]_33_[+2(2.84e-05)]_\ 7 chrIII:11524242-11524322 1.69e-04 36_[+2(2.84e-05)]_7_[+5(7.85e-06)]_\ 21 chrIII:3726618-3726698 7.48e-06 24_[+4(7.58e-06)]_20_[+2(1.41e-05)]_\ 20 chrII:7863885-7863965 2.83e-01 80 chrII:12284221-12284301 2.71e-04 5_[+5(7.85e-06)]_44_[+1(2.10e-05)]_\ 15 chrIV:9589249-9589329 1.47e-03 21_[+4(2.82e-05)]_51 chrII:15025266-15025346 4.70e-05 50_[+2(1.41e-05)]_11_[+3(3.46e-05)]_\ 3 chrIII:2858503-2858583 3.16e-03 24_[+2(6.15e-05)]_48 chrI:3368662-3368742 1.59e-02 39_[+3(3.46e-05)]_33 chrIII:13755860-13755940 2.51e-06 36_[+5(2.89e-05)]_13_[+3(3.46e-05)]_\ 15 chrIV:13247914-13247994 5.24e-02 69_[+1(4.24e-05)]_3 chrII:7353206-7353286 6.21e-04 28_[+5(2.89e-05)]_44 chrIII:8370326-8370406 7.09e-02 80 chrII:13156247-13156327 7.90e-02 80 chrI:11580308-11580388 2.64e-02 80 chrV:4376336-4376416 2.27e-02 9_[+3(8.05e-05)]_63 chrIII:8446196-8446276 3.47e-01 80 chrI:519976-520056 2.02e-06 40_[+2(2.84e-05)]_17_[+1(8.37e-05)]_\ 7 chrI:5619281-5619361 1.75e-03 46_[+2(6.15e-05)]_26 chrIV:4760841-4760921 4.38e-04 24_[+2(6.15e-05)]_30_[+5(1.83e-05)]_\ 10 chrI:9518931-9519011 1.30e-04 41_[+5(1.83e-05)]_9_[+2(6.15e-05)]_\ 14 chrIII:5719954-5720034 6.59e-02 80 chrIV:2677847-2677927 3.91e-02 80 chrI:14163351-14163431 1.26e-01 80 chrV:10018426-10018506 1.87e-01 80 chrIII:4095599-4095679 4.85e-04 7_[+5(4.54e-05)]_27_[+1(4.24e-05)]_\ 30 chrII:14245036-14245116 1.29e-02 80 chrIII:9001629-9001709 3.61e-04 20_[+5(2.89e-05)]_52 chrIII:9776085-9776165 1.19e-02 43_[+3(3.46e-05)]_29 chrIII:4098276-4098356 3.18e-02 19_[+3(3.46e-05)]_53 chrIV:14780685-14780765 4.06e-04 1_[+1(4.24e-05)]_25_[+3(3.46e-05)]_\ 38 chrIII:12426727-12426807 2.19e-02 80 chrV:18086417-18086497 2.10e-01 80 chrIV:3212088-3212168 1.37e-03 13_[+2(6.15e-05)]_59 chrI:3866586-3866666 2.43e-05 32_[+4(2.82e-05)]_40 chrII:4471110-4471190 7.83e-02 80 chrIII:3723905-3723985 7.29e-03 49_[+1(4.24e-05)]_10_[+3(8.05e-05)]_\ 5 chrII:14480016-14480096 6.07e-02 80 chrV:14133128-14133208 6.70e-02 6_[+3(8.05e-05)]_66 chrV:11279712-11279792 2.02e-03 45_[+5(3.46e-05)]_27 chrII:11968422-11968502 1.35e-06 [+5(1.83e-05)]_6_[+2(1.41e-05)]_37_\ [+1(1.04e-05)]_13 chrII:3554808-3554888 3.40e-02 26_[+3(3.46e-05)]_46 chrI:12507888-12507968 3.15e-01 80 chrIII:11290027-11290107 2.79e-02 80 chrI:3198991-3199071 4.60e-04 64_[+2(6.15e-05)]_8 chrI:5138046-5138126 9.42e-03 64_[+1(8.37e-05)]_8 chrIII:3390307-3390387 9.42e-04 25_[+2(9.91e-05)]_47 chrIV:9403951-9404031 1.91e-02 14_[+1(4.24e-05)]_58 chrV:1152880-1152960 1.60e-03 59_[+3(8.05e-05)]_13 chrV:9382689-9382769 6.49e-02 38_[+1(4.24e-05)]_25_[+1(8.37e-05)]_\ 1 chrIV:12154429-12154509 8.79e-06 11_[+5(1.83e-05)]_61 chrII:1369487-1369567 2.65e-01 80 chrIV:10697740-10697820 2.15e-01 80 chrII:15208324-15208404 2.08e-03 58_[+2(9.91e-05)]_14 chrIV:13154768-13154848 4.37e-05 22_[+2(6.15e-05)]_8_[+4(3.40e-05)]_\ 34 chrIV:9778194-9778274 3.36e-02 71_[+1(8.37e-05)]_1 chrIII:10442726-10442806 4.53e-03 80 chrI:14734795-14734875 1.99e-03 35_[+1(8.37e-05)]_17_[+2(1.41e-05)]_\ 12 chrII:7664000-7664080 5.59e-03 80 chrI:11970066-11970146 1.16e-02 2_[+2(1.41e-05)]_29_[+2(2.84e-05)]_\ 33 chrIII:7104197-7104277 8.98e-02 10_[+3(3.46e-05)]_62 chrV:6043445-6043525 2.51e-03 7_[+3(3.46e-05)]_3_[+1(5.27e-05)]_\ 54 chrI:12513593-12513673 4.23e-02 80 chrI:506300-506380 5.85e-04 26_[+2(2.84e-05)]_9_[+4(2.82e-05)]_\ 29 chrI:5791992-5792072 1.44e-01 80 chrI:6513885-6513965 1.54e-03 80 chrI:13310795-13310875 1.24e-03 4_[+2(1.41e-05)]_6_[+2(6.15e-05)]_\ 29_[+1(2.10e-05)]_17 chrIII:9745694-9745774 8.16e-01 80 chrI:6467657-6467737 1.04e-01 80 chrI:128312-128392 7.20e-04 24_[+2(6.15e-05)]_48 chrII:14410935-14411015 3.80e-05 31_[+5(7.85e-06)]_26_[+2(1.41e-05)]_\ 7 chrIII:4313204-4313284 2.52e-04 53_[+5(7.85e-06)]_19 chrIII:7060849-7060929 8.45e-05 40_[+2(6.15e-05)]_8_[+4(1.78e-05)]_\ 16 chrIII:3331946-3332026 1.83e-01 80 chrIV:8538782-8538862 1.47e-02 63_[+2(6.15e-05)]_9 chrV:14457231-14457311 1.44e-02 80 chrV:3578948-3579028 6.66e-03 39_[+2(6.15e-05)]_14_[+1(8.37e-05)]_\ 11 chrIV:5666800-5666880 1.94e-02 80 chrIII:5663676-5663756 1.50e-04 48_[+4(7.58e-06)]_24 chrV:4175773-4175853 1.21e-02 40_[+4(6.81e-05)]_32 chrI:4765585-4765665 1.14e-01 80 chrIII:12225436-12225516 2.55e-05 21_[+5(7.85e-06)]_51 chrIV:12390137-12390217 4.95e-01 80 chrV:8413768-8413848 6.08e-01 80 chrI:3409496-3409576 1.20e-01 29_[+3(3.46e-05)]_43 chrIII:5727932-5728012 1.13e-05 7_[+5(4.54e-05)]_33_[+1(2.10e-05)]_\ 24 chrIII:3309888-3309968 2.33e-02 34_[+1(4.24e-05)]_38 chrIV:2311724-2311804 9.83e-02 80 chrI:2754827-2754907 1.14e-03 36_[+4(1.78e-05)]_36 chrII:10884561-10884641 1.25e-03 64_[+2(2.84e-05)]_8 chrIV:829850-829930 9.67e-04 10_[+4(6.81e-05)]_62 chrIV:7796859-7796939 2.00e-02 62_[+1(8.37e-05)]_10 chrIV:17273872-17273952 2.71e-02 69_[+1(1.04e-05)]_3 chrI:7554741-7554821 4.52e-03 26_[+5(8.59e-05)]_38_[+1(8.37e-05)] chrII:8270174-8270254 1.60e-02 33_[+4(7.58e-06)]_39 chrI:5274307-5274387 3.42e-02 80 chrIII:12575481-12575561 2.26e-01 80 chrIII:10877688-10877768 1.25e-03 12_[+2(2.84e-05)]_60 chrIII:4984853-4984933 5.34e-01 80 chrIII:5483884-5483964 4.88e-01 80 chrIV:2275728-2275808 5.58e-01 80 chrIII:3311782-3311862 1.47e-02 49_[+3(3.46e-05)]_23 chrIII:10093252-10093332 2.46e-01 80 chrV:5717393-5717473 2.45e-01 80 chrI:9988370-9988450 3.27e-01 80 chrIII:3171569-3171649 8.45e-06 27_[+5(2.89e-05)]_29_[+1(2.10e-05)]_\ 8 chrII:13732383-13732463 2.36e-03 71_[+4(2.82e-05)]_1 chrII:11578016-11578096 5.10e-03 9_[+2(6.15e-05)]_63 chrIII:2134087-2134167 1.97e-02 10_[+2(6.15e-05)]_62 chrII:7880555-7880635 2.42e-03 80 chrII:11125254-11125334 1.03e-01 80 chrI:12903619-12903699 2.05e-02 60_[+4(7.58e-06)]_12 chrIII:9848744-9848824 3.23e-02 41_[+3(3.46e-05)]_31 chrII:13722930-13723010 4.09e-04 37_[+5(7.51e-05)]_16_[+1(3.16e-05)]_\ 11 chrI:4583779-4583859 3.43e-01 80 chrII:10935501-10935581 5.46e-05 15_[+4(7.58e-06)]_13_[+4(7.58e-06)]_\ 7_[+2(9.91e-05)]_21 chrV:11917341-11917421 4.14e-04 66_[+4(7.58e-06)]_6 chrIV:13512343-13512423 1.49e-06 31_[+2(6.15e-05)]_[+3(8.05e-05)]_25_\ [+5(7.85e-06)] chrII:13260691-13260771 4.73e-03 48_[+5(5.34e-05)]_24 chrV:20480904-20480984 1.90e-01 80 chrI:12509901-12509981 1.04e-01 80 chrI:4185235-4185315 1.77e-01 80 chrI:13487571-13487651 3.49e-02 43_[+1(4.24e-05)]_29 chrIII:12457400-12457480 2.98e-04 42_[+4(1.78e-05)]_30 chrI:8664220-8664300 2.84e-01 80 chrIII:12977759-12977839 5.72e-03 7_[+5(7.85e-06)]_65 chrIV:11337176-11337256 5.81e-02 80 chrII:7599104-7599184 5.10e-03 36_[+3(3.46e-05)]_36 chrIII:11565752-11565832 1.88e-03 80 chrV:5996257-5996337 1.97e-06 16_[+4(7.58e-06)]_30_[+2(2.84e-05)]_\ 8_[+1(1.04e-05)]_2 chrIV:5469908-5469988 7.45e-03 60_[+1(1.04e-05)]_12 chrII:11050812-11050892 4.79e-02 80 chrIV:7477857-7477937 1.69e-03 72_[+1(1.04e-05)] chrIII:10721205-10721285 3.38e-01 80 chrIII:4176356-4176436 5.62e-02 80 chrIV:6905590-6905670 3.62e-01 80 chrIII:4476939-4477019 1.85e-01 80 chrI:4586246-4586326 3.00e-01 80 chrI:9585234-9585314 5.82e-03 41_[+1(8.37e-05)]_5_[+3(3.46e-05)]_\ 18 chrI:347321-347401 2.35e-04 56_[+2(2.84e-05)]_8_[+2(2.84e-05)] chrV:5596553-5596633 8.69e-02 80 chrIV:4447528-4447608 1.17e-02 80 chrV:7199238-7199318 3.60e-04 39_[+5(9.35e-05)]_33 chrV:11554437-11554517 1.70e-01 80 chrIV:1420790-1420870 7.97e-03 72_[+4(7.58e-06)] chrII:6198653-6198733 9.13e-02 80 chrIV:13029138-13029218 8.01e-03 25_[+1(8.37e-05)]_47 chrII:12880568-12880648 9.77e-05 20_[+2(6.15e-05)]_31_[+5(7.85e-06)]_\ 13 chrIV:1660116-1660196 8.27e-01 80 chrI:364263-364343 5.33e-05 39_[+5(1.83e-05)]_33 chrI:6369865-6369945 2.07e-04 15_[+5(7.85e-06)]_57 chrIII:9054582-9054662 4.16e-02 3_[+4(1.78e-05)]_69 chrII:4222674-4222754 3.82e-01 80 chrIV:7312840-7312920 7.75e-01 80 chrV:6593853-6593933 5.72e-04 80 chrIV:7548374-7548454 1.91e-01 80 chrIV:7764465-7764545 3.52e-03 37_[+4(7.58e-06)]_35 chrIV:2642233-2642313 2.95e-01 80 chrII:11726615-11726695 7.95e-05 34_[+4(7.58e-06)]_38 chrIV:9368018-9368098 8.27e-03 33_[+5(2.89e-05)]_39 chrV:4890123-4890203 5.74e-04 1_[+2(6.15e-05)]_40_[+1(8.37e-05)]_\ 23 chrV:19673470-19673550 2.70e-01 80 chrIV:7509040-7509120 3.65e-03 [+2(1.41e-05)]_72 chrIV:6421339-6421419 2.98e-02 80 chrIV:1177817-1177897 1.98e-02 80 chrIII:11580676-11580756 3.32e-01 80 chrIV:2902120-2902200 3.96e-03 12_[+3(3.46e-05)]_26_[+1(4.24e-05)]_\ 26 chrII:8276225-8276305 7.15e-02 80 chrIV:12194860-12194940 1.33e-02 13_[+5(7.85e-06)]_59 chrII:5377597-5377677 2.62e-01 80 chrII:12739475-12739555 1.83e-02 57_[+2(6.15e-05)]_15 chrI:7056621-7056701 9.78e-03 80 chrIII:6946622-6946702 1.69e-01 80 chrIII:10562051-10562131 4.67e-04 58_[+4(2.82e-05)]_14 chrV:17859214-17859294 4.94e-01 80 chrIII:4489077-4489157 9.28e-02 80 chrII:11782676-11782756 9.90e-04 6_[+2(6.15e-05)]_47_[+1(8.37e-05)]_\ 11 chrI:5113903-5113983 6.23e-04 27_[+2(6.15e-05)]_45 chrV:6496761-6496841 3.22e-03 30_[+4(7.58e-06)]_42 chrV:3204620-3204700 4.88e-05 11_[+4(1.78e-05)]_61 chrIV:12831777-12831857 1.28e-02 35_[+2(6.15e-05)]_37 chrIV:992122-992202 2.92e-01 80 chrI:12733014-12733094 2.39e-03 7_[+1(4.24e-05)]_32_[+3(3.46e-05)]_\ 25 chrV:4370287-4370367 5.45e-02 80 chrII:14125939-14126019 2.72e-02 27_[+3(8.05e-05)]_45 chrI:1872613-1872693 2.80e-02 38_[+4(7.58e-06)]_34 chrI:6317315-6317395 4.82e-04 27_[+3(3.46e-05)]_28_[+4(3.40e-05)]_\ 9 chrI:2156755-2156835 1.24e-01 80 chrI:3931885-3931965 1.50e-01 31_[+2(6.15e-05)]_41 chrIII:9794109-9794189 1.66e-01 80 chrV:15395477-15395557 1.40e-04 60_[+4(7.58e-06)]_12 chrIII:8763264-8763344 2.40e-04 4_[+5(1.83e-05)]_68 chrI:8309283-8309363 6.44e-03 21_[+4(7.58e-06)]_51 chrV:775193-775273 1.34e-01 80 chrIV:11953031-11953111 3.91e-01 80 chrV:4754223-4754303 1.02e-01 1_[+1(6.31e-05)]_71 chrII:1131296-1131376 6.67e-01 80 chrIII:3459373-3459453 2.41e-02 57_[+3(3.46e-05)]_15 chrII:8940714-8940794 1.54e-02 21_[+3(3.46e-05)]_51 chrI:9730425-9730505 6.59e-01 80 chrIV:280648-280728 4.10e-02 80 chrIII:12377440-12377520 1.10e-02 12_[+1(4.24e-05)]_60 chrIII:8675134-8675214 1.43e-01 80 chrIII:9617089-9617169 7.71e-02 80 chrV:12184475-12184555 2.26e-01 80 chrI:534292-534372 1.91e-02 59_[+3(8.05e-05)]_13 chrIV:6777408-6777488 2.37e-01 80 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n07.farnam.hpc.yale.internal ********************************************************************************